Ji Huang - Publications

New York University, New York, NY, United States 

20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Feng Z, Feng J, Zhang B, Fei Y, Zhang H, Huang J. PhasiHunter: a robust phased siRNA regulatory cascade mining tool based on multiple reference sequences. Bioinformatics (Oxford, England). 39. PMID 37950456 DOI: 10.1093/bioinformatics/btad676  0.329
2023 Huang J, Katari MS, Juang CL, Coruzzi GM, Brooks MD. Building High-Confidence Gene Regulatory Networks by Integrating Validated TF-Target Gene Interactions Using ConnecTF. Methods in Molecular Biology (Clifton, N.J.). 2698: 195-220. PMID 37682477 DOI: 10.1007/978-1-0716-3354-0_13  0.806
2023 Zhang B, Zhu X, Chen Z, Zhang H, Huang J, Huang J. RiceTFtarget: A Rice Transcription Factor-Target Prediction Server Based on Co-expression and Machine Learning. Plant Physiology. PMID 37294915 DOI: 10.1093/plphys/kiad332  0.308
2023 Xu M, Gu Z, Huang J, Guo B, Jiang L, Xu K, Ye Y, Li J. The Complete Mitochondrial Genome of (Mollusca: Bivalvia), Novel Gene Rearrangements, and the Phylogenetic Relationships of Mytilidae. Genes. 14. PMID 37107667 DOI: 10.3390/genes14040910  0.338
2022 Shanks CM, Huang J, Cheng CY, Shih HS, Brooks MD, Alvarez JM, Araus V, Swift J, Henry A, Coruzzi GM. Validation of a high-confidence regulatory network for gene-to-NUE phenotype in field-grown rice. Frontiers in Plant Science. 13: 1006044. PMID 36507422 DOI: 10.3389/fpls.2022.1006044  0.522
2021 Gao X, Zhang J, Li J, Wang Y, Zhang R, Du H, Yin J, Cai G, Wang R, Zhang B, Zhao Z, Zhang H, Huang J. The phosphoproteomic and interactomic landscape of qGL3/OsPPKL1-mediated brassinosteroid signaling in rice. The Plant Journal : For Cell and Molecular Biology. PMID 34839552 DOI: 10.1111/tpj.15613  0.315
2021 Cheng CY, Li Y, Varala K, Bubert J, Huang J, Kim GJ, Halim J, Arp J, Shih HS, Levinson G, Park SH, Cho HY, Moose SP, Coruzzi GM. Evolutionarily informed machine learning enhances the power of predictive gene-to-phenotype relationships. Nature Communications. 12: 5627. PMID 34561450 DOI: 10.1038/s41467-021-25893-w  0.718
2021 Brooks MD, Juang CL, Katari MS, Alvarez JM, Pasquino A, Shih HJ, Huang J, Shanks C, Cirrone J, Coruzzi GM. ConnecTF: A platform to integrate transcription factor-gene interactions and validate regulatory networks. Plant Physiology. 185: 49-66. PMID 33631799 DOI: 10.1093/plphys/kiaa012  0.664
2021 Fei Y, Feng J, Wang R, Zhang B, Zhang H, Huang J. PhasiRNAnalyzer: an integrated analyser for plant phased siRNAs. Rna Biology. 1-8. PMID 33541212 DOI: 10.1080/15476286.2021.1879543  0.37
2020 Vendramin S, Huang J, Crisp PA, Madzima TF, McGinnis KM. Epigenetic Regulation of ABA-Induced Transcriptional Responses in Maize. G3 (Bethesda, Md.). PMID 32179621 DOI: 10.1534/g3.119.400993  0.443
2019 Wang R, Cheng Y, Ke X, Zhang X, Zhang H, Huang J. Comparative analysis of salt responsive gene regulatory networks in rice and Arabidopsis. Computational Biology and Chemistry. 85: 107188. PMID 31954202 DOI: 10.1016/j.compbiolchem.2019.107188  0.53
2019 Ahmad F, Farman K, Waseem M, Rana RM, Nawaz MA, Rehman HM, Abbas T, Baloch FS, Akrem A, Huang J, Zhang H. Genome-wide identification, classification, expression profiling and DNA methylation (5mC) analysis of stress-responsive ZFP transcription factors in rice (Oryza sativa L.). Gene. 144018. PMID 31454543 DOI: 10.1016/j.gene.2019.144018  0.385
2018 Yuan X, Huang P, Wang R, Li H, Lv X, Duan M, Tang H, Zhang H, Huang J. A zinc finger transcriptional repressor confers pleiotropic effects on rice growth and drought tolerance by down-regulating stress-responsive genes. Plant & Cell Physiology. PMID 30020522 DOI: 10.1093/pcp/pcy133  0.379
2018 Huang J, Zheng J, Yuan H, McGinnis K. Distinct tissue-specific transcriptional regulation revealed by gene regulatory networks in maize. Bmc Plant Biology. 18: 111. PMID 29879919 DOI: 10.1186/s12870-018-1329-y  0.487
2017 Huang J, Vendramin S, Shi L, McGinnis KM. Construction and Optimization of a Large Gene Coexpression Network in Maize Using RNA-Seq Data. Plant Physiology. 175: 568-583. PMID 28768814 DOI: 10.1104/pp.17.00825  0.427
2017 Huang P, Yoshida H, Yano K, Kinoshita S, Kawai K, Koketsu E, Hattori M, Takehara S, Huang J, Hirano K, Ordonio RL, Matsuoka M, Ueguchi-Tanaka M. OsIDD2, a zinc finger and INDETERMINATE DOMAIN protein regulates secondary cell wall formation(FA). Journal of Integrative Plant Biology. PMID 28574161 DOI: 10.1111/jipb.12557  0.463
2014 Madzima TF, Huang J, McGinnis KM. Chromatin structure and gene expression changes associated with loss of MOP1 activity in Zea mays. Epigenetics. 9: 1047-59. PMID 24786611 DOI: 10.4161/epi.29022  0.361
2011 Chen X, Gu Z, Xin D, Hao L, Liu C, Huang J, Ma B, Zhang H. Identification and characterization of putative CIPK genes in maize. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 38: 77-87. PMID 21356527 DOI: 10.1016/j.jcg.2011.01.005  0.422
2008 Huang J, Wang MM, Bao YM, Sun SJ, Pan LJ, Zhang HS. SRWD: a novel WD40 protein subfamily regulated by salt stress in rice (OryzasativaL.). Gene. 424: 71-9. PMID 18755256 DOI: 10.1016/j.gene.2008.07.027  0.337
2005 Huang J, Zhang HS, Wang D, Cao YJ, Yang JS. [Serial analysis of gene expression]. Yi Chuan = Hereditas. 24: 203-6. PMID 16118144  0.34
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