| Year |
Citation |
Score |
| 2024 |
Caenepeel C, Deleu S, Vazquez Castellanos JF, Arnauts K, Braekeleire S, Machiels K, Baert F, Mana F, Pouillon L, Hindryckx P, Lobaton T, Louis E, Franchimont D, Verstockt B, Ferrante M, ... ... Raes J, et al. RIGOROUS DONOR SELECTION FOR FMT IN ACTIVE ULCERATIVE COLITIS: KEY LESSONS FROM A RANDOMIZED CONTROLLED TRIAL HALTED FOR FUTILITY. Clinical Gastroenterology and Hepatology : the Official Clinical Practice Journal of the American Gastroenterological Association. PMID 38788915 DOI: 10.1016/j.cgh.2024.05.017 |
0.563 |
|
| 2024 |
Tito RY, Verbandt S, Aguirre Vazquez M, Lahti L, Verspecht C, Lloréns-Rico V, Vieira-Silva S, Arts J, Falony G, Dekker E, Reumers J, Tejpar S, Raes J. Microbiome confounders and quantitative profiling challenge predicted microbial targets in colorectal cancer development. Nature Medicine. 30: 1339-1348. PMID 38689063 DOI: 10.1038/s41591-024-02963-2 |
0.587 |
|
| 2023 |
Caenepeel C, Falony G, Machiels K, Verstockt B, Goncalves PJ, Ferrante M, Sabino J, Raes J, Vieira-Silva S, Vermeire S. Dysbiosis and Associated Stool Features Improve Prediction of Response to Biological Therapy in Inflammatory Bowel Disease. Gastroenterology. PMID 38096956 DOI: 10.1053/j.gastro.2023.11.304 |
0.591 |
|
| 2023 |
Andrikopoulos P, Aron-Wisnewsky J, Chakaroun R, Myridakis A, Forslund SK, Nielsen T, Adriouch S, Holmes B, Chilloux J, Vieira-Silva S, Falony G, Salem JE, Andreelli F, Belda E, Kieswich J, ... ... Raes J, et al. Evidence of a causal and modifiable relationship between kidney function and circulating trimethylamine N-oxide. Nature Communications. 14: 5843. PMID 37730687 DOI: 10.1038/s41467-023-39824-4 |
0.783 |
|
| 2023 |
Poppe J, Vieira-Silva S, Raes J, Verbeke K, Falony G. Systematic optimization of fermentation conditions for fermentations with fecal inocula. Frontiers in Microbiology. 14: 1198903. PMID 37555071 DOI: 10.3389/fmicb.2023.1198903 |
0.604 |
|
| 2023 |
Fan Y, Støving RK, Berreira Ibraim S, Hyötyläinen T, Thirion F, Arora T, Lyu L, Stankevic E, Hansen TH, Déchelotte P, Sinioja T, Ragnarsdottir O, Pons N, Galleron N, Quinquis B, ... ... Raes J, et al. The gut microbiota contributes to the pathogenesis of anorexia nervosa in humans and mice. Nature Microbiology. 8: 787-802. PMID 37069399 DOI: 10.1038/s41564-023-01355-5 |
0.644 |
|
| 2023 |
Jansen D, Falony G, Vieira-Silva S, Simsek C, Marcelis T, Caenepeel C, Machiels K, Raes J, Vermeire S, Matthijnssens J. Community Types Of The Human Gut Virome Are Associated With Endoscopic Outcome In Ulcerative Colitis. Journal of Crohn's & Colitis. PMID 37052201 DOI: 10.1093/ecco-jcc/jjad061 |
0.615 |
|
| 2023 |
Goosen C, Proost S, Baumgartner J, Mallick K, Tito RY, Barnabas SL, Cotton MF, Zimmermann MB, Raes J, Blaauw R. Associations of HIV and iron status with gut microbiota composition, gut inflammation, and gut integrity in South African school-age children: A two-way factorial case-control study. Journal of Human Nutrition and Dietetics : the Official Journal of the British Dietetic Association. PMID 36992541 DOI: 10.1111/jhn.13171 |
0.64 |
|
| 2023 |
Devolder L, Pauwels A, Van Remoortel A, Falony G, Vieira-Silva S, Nagels G, De Keyser J, Raes J, D'Hooghe MB. Gut microbiome composition is associated with long-term disability worsening in multiple sclerosis. Gut Microbes. 15: 2180316. PMID 36803643 DOI: 10.1080/19490976.2023.2180316 |
0.579 |
|
| 2023 |
Kennedy KM, de Goffau MC, Perez-Muñoz ME, Arrieta MC, Bäckhed F, Bork P, Braun T, Bushman FD, Dore J, de Vos WM, Earl AM, Eisen JA, Elovitz MA, Ganal-Vonarburg SC, Gänzle MG, ... ... Raes J, et al. Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature. 613: 639-649. PMID 36697862 DOI: 10.1038/s41586-022-05546-8 |
0.576 |
|
| 2022 |
van de Velde CC, Joseph C, Biclot A, Huys GRB, Pinheiro VB, Bernaerts K, Raes J, Faust K. Fast quantification of gut bacterial species in cocultures using flow cytometry and supervised classification. Isme Communications. 2: 40. PMID 37938658 DOI: 10.1038/s43705-022-00123-6 |
0.55 |
|
| 2022 |
Si J, Vázquez-Castellanos JF, Gregory AC, Decommer L, Rymenans L, Proost S, Centelles Lodeiro J, Weger M, Notdurfter M, Leitner C, Santer P, Rungger G, Willeit J, Willeit P, Pechlaner R, ... ... Raes J, et al. Long-term life history predicts current gut microbiome in a population-based cohort study. Nature Aging. 2: 885-895. PMID 37118287 DOI: 10.1038/s43587-022-00286-w |
0.665 |
|
| 2022 |
van de Velde C, Joseph C, Simoens K, Raes J, Bernaerts K, Faust K. Technical versus biological variability in a synthetic human gut community. Gut Microbes. 15: 2155019. PMID 36580382 DOI: 10.1080/19490976.2022.2155019 |
0.561 |
|
| 2022 |
Suriano F, Vieira-Silva S, Falony G, de Wouters d'Oplinter A, Paone P, Delzenne NM, Everard A, Raes J, Van Hul M, Cani PD. Fat and not sugar as the determining factor for gut microbiota changes, obesity, and related metabolic disorders in mice. American Journal of Physiology. Endocrinology and Metabolism. 324: E85-E96. PMID 36516223 DOI: 10.1152/ajpendo.00141.2022 |
0.591 |
|
| 2022 |
Procházková N, Falony G, Dragsted LO, Licht TR, Raes J, Roager HM. Advancing human gut microbiota research by considering gut transit time. Gut. PMID 36171079 DOI: 10.1136/gutjnl-2022-328166 |
0.618 |
|
| 2022 |
Biclot A, Huys GRB, Bacigalupe R, D'hoe K, Vandeputte D, Falony G, Tito RY, Raes J. Effect of cryopreservation medium conditions on growth and isolation of gut anaerobes from human faecal samples. Microbiome. 10: 80. PMID 35644616 DOI: 10.1186/s40168-022-01267-2 |
0.601 |
|
| 2022 |
Beller L, Deboutte W, Vieira-Silva S, Falony G, Tito RY, Rymenans L, Yinda CK, Vanmechelen B, Van Espen L, Jansen D, Shi C, Zeller M, Maes P, Faust K, Van Ranst M, ... Raes J, et al. The virota and its transkingdom interactions in the healthy infant gut. Proceedings of the National Academy of Sciences of the United States of America. 119: e2114619119. PMID 35320047 DOI: 10.1073/pnas.2114619119 |
0.687 |
|
| 2022 |
Ebrahim Z, Proost S, Tito RY, Raes J, Glorieux G, Moosa MR, Blaauw R. The Effect of ß-Glucan Prebiotic on Kidney Function, Uremic Toxins and Gut Microbiome in Stage 3 to 5 Chronic Kidney Disease (CKD) Predialysis Participants: A Randomized Controlled Trial. Nutrients. 14. PMID 35215453 DOI: 10.3390/nu14040805 |
0.665 |
|
| 2022 |
Fromentin S, Forslund SK, Chechi K, Aron-Wisnewsky J, Chakaroun R, Nielsen T, Tremaroli V, Ji B, Prifti E, Myridakis A, Chilloux J, Andrikopoulos P, Fan Y, Olanipekun MT, Alves R, ... ... Raes J, et al. Microbiome and metabolome features of the cardiometabolic disease spectrum. Nature Medicine. PMID 35177860 DOI: 10.1038/s41591-022-01688-4 |
0.782 |
|
| 2022 |
Belda E, Voland L, Tremaroli V, Falony G, Adriouch S, Assmann KE, Prifiti E, Aron-Wisnewsky J, Debédat J, Le Roy T, Nielsen T, Amouyal C, André S, Andreelli F, Blüher M, ... ... Raes J, et al. Impairment of gut microbial biotin metabolism and host biotin status in severe obesity: effect of biotin and prebiotic supplementation on improved metabolism. Gut. PMID 35017197 DOI: 10.1136/gutjnl-2021-325753 |
0.788 |
|
| 2022 |
Goosen C, Proost S, Tito RY, Baumgartner J, Barnabas SL, Cotton MF, Zimmermann MB, Raes J, Blaauw R. The effect of oral iron supplementation on the gut microbiota, gut inflammation, and iron status in iron-depleted South African school-age children with virally suppressed HIV and without HIV. European Journal of Nutrition. PMID 34997267 DOI: 10.1007/s00394-021-02793-9 |
0.624 |
|
| 2021 |
Röttjers L, Vandeputte D, Raes J, Faust K. Null-model-based network comparison reveals core associations. Isme Communications. 1: 36. PMID 37938641 DOI: 10.1038/s43705-021-00036-w |
0.496 |
|
| 2021 |
Valles-Colomer M, Bacigalupe R, Vieira-Silva S, Suzuki S, Darzi Y, Tito RY, Yamada T, Segata N, Raes J, Falony G. Variation and transmission of the human gut microbiota across multiple familial generations. Nature Microbiology. PMID 34969979 DOI: 10.1038/s41564-021-01021-8 |
0.733 |
|
| 2021 |
Deutschmann IM, Lima-Mendez G, Krabberød AK, Raes J, Vallina SM, Faust K, Logares R. Correction to: Disentangling environmental effects in microbial association networks. Microbiome. 9: 245. PMID 34933691 DOI: 10.1186/s40168-021-01209-4 |
0.488 |
|
| 2021 |
Beller L, Deboutte W, Falony G, Vieira-Silva S, Tito RY, Valles-Colomer M, Rymenans L, Jansen D, Van Espen L, Papadaki MI, Shi C, Yinda CK, Zeller M, Faust K, Van Ranst M, ... Raes J, et al. Successional Stages in Infant Gut Microbiota Maturation. Mbio. 12: e0185721. PMID 34903050 DOI: 10.1128/mBio.01857-21 |
0.697 |
|
| 2021 |
Forslund SK, Chakaroun R, Zimmermann-Kogadeeva M, Markó L, Aron-Wisnewsky J, Nielsen T, Moitinho-Silva L, Schmidt TSB, Falony G, Vieira-Silva S, Adriouch S, Alves RJ, Assmann K, Bastard JP, Birkner T, ... ... Raes J, et al. Combinatorial, additive and dose-dependent drug-microbiome associations. Nature. 600: 500-505. PMID 34880489 DOI: 10.1038/s41586-021-04177-9 |
0.782 |
|
| 2021 |
Gryp T, Faust K, Van Biesen W, Huys GRB, Verbeke F, Speeckaert M, Raes J, Vaneechoutte M, Joossens M, Glorieux G. Gut Microbiome Profiling Uncovers a Lower Abundance of in Advanced Stages of Chronic Kidney Disease. Journal of Personalized Medicine. 11. PMID 34834470 DOI: 10.3390/jpm11111118 |
0.523 |
|
| 2021 |
Deutschmann IM, Lima-Mendez G, Krabberød AK, Raes J, Vallina SM, Faust K, Logares R. Disentangling environmental effects in microbial association networks. Microbiome. 9: 232. PMID 34823593 DOI: 10.1186/s40168-021-01141-7 |
0.517 |
|
| 2021 |
Vandeputte D, De Commer L, Tito RY, Kathagen G, Sabino J, Vermeire S, Faust K, Raes J. Temporal variability in quantitative human gut microbiome profiles and implications for clinical research. Nature Communications. 12: 6740. PMID 34795283 DOI: 10.1038/s41467-021-27098-7 |
0.557 |
|
| 2021 |
Mirzayi C, Renson A, Zohra F, Elsafoury S, Geistlinger L, Kasselman LJ, Eckenrode K, van de Wijgert J, Loughman A, Marques FZ, MacIntyre DA, Arumugam M, Azhar R, ... ... Raes J, et al. Reporting guidelines for human microbiome research: the STORMS checklist. Nature Medicine. PMID 34789871 DOI: 10.1038/s41591-021-01552-x |
0.73 |
|
| 2021 |
Steenackers N, Falony G, Augustijns P, Van der Schueren B, Vanuytsel T, Vieira-Silva S, Wauters L, Raes J, Matthys C. Specific contributions of segmental transit times to gut microbiota composition. Gut. PMID 34642242 DOI: 10.1136/gutjnl-2021-325916 |
0.577 |
|
| 2021 |
Pero-Gascon R, Hemeryck LY, Poma G, Falony G, Nawrot TS, Raes J, Vanhaecke L, De Boevre M, Covaci A, De Saeger S. FLEXiGUT: Rationale for exposomics associations with chronic low-grade gut inflammation. Environment International. 158: 106906. PMID 34607040 DOI: 10.1016/j.envint.2021.106906 |
0.602 |
|
| 2021 |
Suriano F, Vieira-Silva S, Falony G, Roumain M, Paquot A, Pelicaen R, Régnier M, Delzenne NM, Raes J, Muccioli GG, Van Hul M, Cani PD. Novel insights into the genetically obese (ob/ob) and diabetic (db/db) mice: two sides of the same coin. Microbiome. 9: 147. PMID 34183063 DOI: 10.1186/s40168-021-01097-8 |
0.704 |
|
| 2021 |
Lloréns-Rico V, Vieira-Silva S, Gonçalves PJ, Falony G, Raes J. Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases. Nature Communications. 12: 3562. PMID 34117246 DOI: 10.1038/s41467-021-23821-6 |
0.742 |
|
| 2021 |
Le Roy T, Moens de Hase E, Van Hul M, Paquot A, Pelicaen R, Régnier M, Depommier C, Druart C, Everard A, Maiter D, Delzenne NM, Bindels LB, de Barsy M, Loumaye A, Hermans MP, ... ... Raes J, et al. is a newly isolated human commensal bacterium preventing diet-induced obesity and metabolic disorders in mice. Gut. PMID 34108237 DOI: 10.1136/gutjnl-2020-323778 |
0.595 |
|
| 2021 |
Acinas SG, Sánchez P, Salazar G, Cornejo-Castillo FM, Sebastián M, Logares R, Royo-Llonch M, Paoli L, Sunagawa S, Hingamp P, Ogata H, Lima-Mendez G, Roux S, González JM, Arrieta JM, ... ... Raes J, et al. Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities. Communications Biology. 4: 604. PMID 34021239 DOI: 10.1038/s42003-021-02112-2 |
0.571 |
|
| 2021 |
Brial F, Chilloux J, Nielsen T, Vieira-Silva S, Falony G, Andrikopoulos P, Olanipekun M, Hoyles L, Djouadi F, Neves AL, Rodriguez-Martinez A, Mouawad GI, Pons N, Forslund S, Le-Chatelier E, ... ... Raes J, et al. Human and preclinical studies of the host-gut microbiome co-metabolite hippurate as a marker and mediator of metabolic health. Gut. PMID 33975870 DOI: 10.1136/gutjnl-2020-323314 |
0.785 |
|
| 2021 |
Kurilshikov A, Medina-Gomez C, Bacigalupe R, Radjabzadeh D, Wang J, Demirkan A, Le Roy CI, Raygoza Garay JA, Finnicum CT, Liu X, Zhernakova DV, Bonder MJ, Hansen TH, Frost F, Rühlemann MC, ... ... Raes J, et al. Large-scale association analyses identify host factors influencing human gut microbiome composition. Nature Genetics. PMID 33462485 DOI: 10.1038/s41588-020-00763-1 |
0.642 |
|
| 2021 |
Kurilshikov A, Medina-Gomez C, Bacigalupe R, Radjabzadeh D, Wang J, Demirkan A, Le Roy CI, Raygoza Garay JA, Finnicum CT, Liu X, Zhernakova DV, Bonder MJ, Hansen TH, Frost F, Rühlemann MC, ... ... Raes J, et al. Large-scale association analyses identify host factors influencing human gut microbiome composition. Nature Genetics. PMID 33462485 DOI: 10.1038/s41588-020-00763-1 |
0.642 |
|
| 2020 |
Molinaro A, Bel Lassen P, Henricsson M, Wu H, Adriouch S, Belda E, Chakaroun R, Nielsen T, Bergh PO, Rouault C, André S, Marquet F, Andreelli F, Salem JE, Assmann K, ... ... Raes J, et al. Author Correction: Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology. Nature Communications. 11: 6448. PMID 33349634 DOI: 10.1038/s41467-020-20412-9 |
0.774 |
|
| 2020 |
Molinaro A, Bel Lassen P, Henricsson M, Wu H, Adriouch S, Belda E, Chakaroun R, Nielsen T, Bergh PO, Rouault C, André S, Marquet F, Andreelli F, Salem JE, Assmann K, ... ... Raes J, et al. Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology. Nature Communications. 11: 5881. PMID 33208748 DOI: 10.1038/s41467-020-19589-w |
0.798 |
|
| 2020 |
Souffriau J, Timmermans S, Vanderhaeghen T, Wallaeys C, Van Looveren K, Aelbrecht L, Dewaele S, Vandewalle J, Goossens E, Verbanck S, Boyen F, Eggermont M, De Commer L, De Rycke R, De Bruyne M, ... ... Raes J, et al. Zinc inhibits lethal inflammatory shock by preventing microbe-induced interferon signature in intestinal epithelium. Embo Molecular Medicine. e11917. PMID 32914580 DOI: 10.15252/Emmm.201911917 |
0.315 |
|
| 2020 |
Hughes DA, Bacigalupe R, Wang J, Rühlemann MC, Tito RY, Falony G, Joossens M, Vieira-Silva S, Henckaerts L, Rymenans L, Verspecht C, Ring S, Franke A, Wade KH, Timpson NJ, ... Raes J, et al. Genome-wide associations of human gut microbiome variation and implications for causal inference analyses. Nature Microbiology. PMID 32572223 DOI: 10.1038/S41564-020-0743-8 |
0.655 |
|
| 2020 |
Vieira-Silva S, Falony G, Belda E, Nielsen T, Aron-Wisnewsky J, Chakaroun R, Forslund SK, Assmann K, Valles-Colomer M, Nguyen TTD, Proost S, Prifti E, Tremaroli V, Pons N, Le Chatelier E, ... ... Raes J, et al. Statin therapy is associated with lower prevalence of gut microbiota dysbiosis. Nature. 581: 310-315. PMID 32433607 DOI: 10.1038/S41586-020-2269-X |
0.78 |
|
| 2019 |
Park R, Dzialo MC, Spaepen S, Nsabimana D, Gielens K, Devriese H, Crauwels S, Tito RY, Raes J, Lievens B, Verstrepen KJ. Microbial communities of the house fly Musca domestica vary with geographical location and habitat. Microbiome. 7: 147. PMID 31699144 DOI: 10.1186/S40168-019-0748-9 |
0.412 |
|
| 2019 |
D'hoe K, Vet S, Faust K, Moens F, Falony G, Gonze D, Lloréns-Rico V, Gelens L, Danckaert J, De Vuyst L, Raes J. Correction: Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community. Elife. 8. PMID 31682225 DOI: 10.7554/Elife.53217 |
0.707 |
|
| 2019 |
Vrancken G, Gregory AC, Huys GRB, Faust K, Raes J. Synthetic ecology of the human gut microbiota. Nature Reviews. Microbiology. PMID 31578461 DOI: 10.1038/S41579-019-0264-8 |
0.624 |
|
| 2019 |
Le Roy CI, Wells PM, Si J, Raes J, Bell JT, Spector TD. Red Wine Consumption Associated With Increased Gut Microbiota α-diversity in 3 Independent Cohorts. Gastroenterology. PMID 31472153 DOI: 10.1053/J.Gastro.2019.08.024 |
0.304 |
|
| 2019 |
Vázquez-Castellanos JF, Biclot A, Vrancken G, Huys GR, Raes J. Design of synthetic microbial consortia for gut microbiota modulation. Current Opinion in Pharmacology. 49: 52-59. PMID 31430629 DOI: 10.1016/J.Coph.2019.07.005 |
0.383 |
|
| 2019 |
Aden K, Rehman A, Waschina S, Pan WH, Walker A, Lucio M, Nunez AM, Bharti R, Zimmerman J, Bethge J, Schulte B, Schulte D, Franke A, Nikolaus S, Schroeder JO, ... ... Raes J, et al. Metabolic Functions of Gut Microbes Associate With Efficacy of Tumor Necrosis Factor Antagonists in Patients with Inflammatory Bowel Diseases. Gastroenterology. PMID 31326413 DOI: 10.1053/J.Gastro.2019.07.025 |
0.334 |
|
| 2019 |
Depommier C, Everard A, Druart C, Plovier H, Van Hul M, Vieira-Silva S, Falony G, Raes J, Maiter D, Delzenne NM, de Barsy M, Loumaye A, Hermans MP, Thissen JP, de Vos WM, et al. Supplementation with Akkermansia muciniphila in overweight and obese human volunteers: a proof-of-concept exploratory study. Nature Medicine. PMID 31263284 DOI: 10.1038/S41591-019-0495-2 |
0.623 |
|
| 2019 |
Vieira-Silva S, Sabino J, Valles-Colomer M, Falony G, Kathagen G, Caenepeel C, Cleynen I, van der Merwe S, Vermeire S, Raes J. Quantitative microbiome profiling disentangles inflammation- and bile duct obstruction-associated microbiota alterations across PSC/IBD diagnoses. Nature Microbiology. PMID 31209308 DOI: 10.1038/S41564-019-0483-9 |
0.657 |
|
| 2019 |
Lloréns-Rico V, Raes J. Tracking humans and microbes. Nature. 569: 632-633. PMID 31142867 DOI: 10.1038/D41586-019-01591-Y |
0.309 |
|
| 2019 |
Falony G, Vandeputte D, Caenepeel C, Vieira-Silva S, Daryoush T, Vermeire S, Raes J. The human microbiome in health and disease: hype or hope. Acta Clinica Belgica. 1-12. PMID 30810508 DOI: 10.1080/17843286.2019.1583782 |
0.623 |
|
| 2019 |
Valles-Colomer M, Falony G, Darzi Y, Tigchelaar EF, Wang J, Tito RY, Schiweck C, Kurilshikov A, Joossens M, Wijmenga C, Claes S, Van Oudenhove L, Zhernakova A, Vieira-Silva S, Raes J. The neuroactive potential of the human gut microbiota in quality of life and depression. Nature Microbiology. PMID 30718848 DOI: 10.1038/S41564-018-0337-X |
0.644 |
|
| 2019 |
De Paepe K, Verspreet J, Rezaei MN, Hidalgo Martinez S, Meysman F, Van de Walle D, Dewettinck K, Raes J, Courtin C, Van de Wiele T. Isolation of wheat bran-colonizing and metabolizing species from the human fecal microbiota. Peerj. 7: e6293. PMID 30701133 DOI: 10.7717/Peerj.6293 |
0.37 |
|
| 2019 |
Valles-Colomer M, Falony G, Vieira-Silva S, Raes J. Practical guidelines for gut microbiome analysis in microbiota-gut-brain axis research Behavioral and Brain Sciences. 42. DOI: 10.1017/S0140525X18002881 |
0.619 |
|
| 2018 |
Joossens M, Faust K, Gryp T, Nguyen ATL, Wang J, Eloot S, Schepers E, Dhondt A, Pletinck A, Vieira-Silva S, Falony G, Vaneechoutte M, Vanholder R, Van Biesen W, Huys GRB, ... Raes J, et al. Gut microbiota dynamics and uraemic toxins: one size does not fit all. Gut. PMID 30464044 DOI: 10.1136/Gutjnl-2018-317561 |
0.745 |
|
| 2018 |
Hansen LBS, Roager HM, Søndertoft NB, Gøbel RJ, Kristensen M, Vallès-Colomer M, Vieira-Silva S, Ibrügger S, Lind MV, Mærkedahl RB, Bahl MI, Madsen ML, Havelund J, Falony G, Tetens I, ... ... Raes J, et al. A low-gluten diet induces changes in the intestinal microbiome of healthy Danish adults. Nature Communications. 9: 4630. PMID 30425247 DOI: 10.1038/S41467-018-07019-X |
0.596 |
|
| 2018 |
Boesmans L, Valles-Colomer M, Wang J, Eeckhaut V, Falony G, Ducatelle R, Van Immerseel F, Raes J, Verbeke K. Butyrate Producers as Potential Next-Generation Probiotics: Safety Assessment of the Administration of to Healthy Volunteers. Msystems. 3. PMID 30417112 DOI: 10.1128/mSystems.00094-18 |
0.596 |
|
| 2018 |
D'hoe K, Vet S, Faust K, Moens F, Falony G, Gonze D, Lloréns-Rico V, Gelens L, Danckaert J, De Vuyst L, Raes J. Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community. Elife. 7. PMID 30322445 DOI: 10.7554/Elife.37090 |
0.719 |
|
| 2018 |
He Y, Wu W, Wu S, Zheng HM, Li P, Sheng HF, Chen MX, Chen ZH, Ji GY, Zheng ZD, Mujagond P, Chen XJ, Rong ZH, Chen P, Lyu LY, ... ... Raes J, et al. Linking gut microbiota, metabolic syndrome and economic status based on a population-level analysis. Microbiome. 6: 172. PMID 30249275 DOI: 10.1186/S40168-018-0557-6 |
0.35 |
|
| 2018 |
Tito RY, Chaffron S, Caenepeel C, Lima-Mendez G, Wang J, Vieira-Silva S, Falony G, Hildebrand F, Darzi Y, Rymenans L, Verspecht C, Bork P, Vermeire S, Joossens M, Raes J. Population-level analysis of subtype prevalence and variation in the human gut microbiota. Gut. PMID 30171064 DOI: 10.1136/Gutjnl-2018-316106 |
0.787 |
|
| 2018 |
He Y, Wu W, Zheng HM, Li P, McDonald D, Sheng HF, Chen MX, Chen ZH, Ji GY, Zheng ZD, Mujagond P, Chen XJ, Rong ZH, Chen P, Lyu LY, ... ... Raes J, et al. Regional variation limits applications of healthy gut microbiome reference ranges and disease models. Nature Medicine. PMID 30150716 DOI: 10.1038/S41591-018-0164-X |
0.347 |
|
| 2018 |
De Paepe K, Verspreet J, Verbeke K, Raes J, Courtin CM, Van de Wiele T. Introducing insoluble wheat bran as a gut microbiota niche in an in vitro dynamic gut model stimulates propionate and butyrate production and induces colon region specific shifts in the luminal and mucosal microbial community. Environmental Microbiology. PMID 30126070 DOI: 10.1111/1462-2920.14381 |
0.405 |
|
| 2018 |
Huys GR, Raes J. Go with the flow or solitary confinement: a look inside the single-cell toolbox for isolation of rare and uncultured microbes. Current Opinion in Microbiology. 44: 1-8. PMID 29908491 DOI: 10.1016/J.Mib.2018.05.002 |
0.343 |
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| 2018 |
Wang J, Kurilshikov A, Radjabzadeh D, Turpin W, Croitoru K, Bonder MJ, Jackson MA, Medina-Gomez C, Frost F, Homuth G, Rühlemann M, Hughes D, Kim HN, Spector TD, ... ... Raes J, et al. Meta-analysis of human genome-microbiome association studies: the MiBioGen consortium initiative. Microbiome. 6: 101. PMID 29880062 DOI: 10.1186/S40168-018-0479-3 |
0.378 |
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| 2018 |
Falony G, Vieira-Silva S, Raes J. Richness and ecosystem development across faecal snapshots of the gut microbiota. Nature Microbiology. 3: 526-528. PMID 29693658 DOI: 10.1038/S41564-018-0143-5 |
0.661 |
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| 2018 |
Schmidt TSB, Raes J, Bork P. The Human Gut Microbiome: From Association to Modulation. Cell. 172: 1198-1215. PMID 29522742 DOI: 10.1016/J.Cell.2018.02.044 |
0.589 |
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| 2018 |
Costea PI, Hildebrand F, Arumugam M, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, ... ... Raes J, et al. Publisher Correction: Enterotypes in the landscape of gut microbial community composition. Nature Microbiology. PMID 29440750 DOI: 10.1038/S41564-018-0114-X |
0.782 |
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| 2018 |
D'hoe K, Conterno L, Fava F, Falony G, Vieira-Silva S, Vermeiren J, Tuohy K, Raes J. Prebiotic Wheat Bran Fractions Induce Specific Microbiota Changes. Frontiers in Microbiology. 9: 31. PMID 29416529 DOI: 10.3389/Fmicb.2018.00031 |
0.64 |
|
| 2018 |
Carradec Q, Pelletier E, Da Silva C, Alberti A, Seeleuthner Y, Blanc-Mathieu R, Lima-Mendez G, Rocha F, Tirichine L, Labadie K, Kirilovsky A, Bertrand A, Engelen S, Madoui MA, Méheust R, ... ... Raes J, et al. A global ocean atlas of eukaryotic genes. Nature Communications. 9: 373. PMID 29371626 DOI: 10.1038/S41467-017-02342-1 |
0.61 |
|
| 2018 |
Costea PI, Hildebrand F, Manimozhiyan A, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, ... ... Raes J, et al. Enterotypes in the landscape of gut microbial community composition. Nature Microbiology. 3: 8-16. PMID 29255284 DOI: 10.1038/S41564-017-0072-8 |
0.764 |
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| 2018 |
Caenepeel C, Vieira-Silva S, Sabino J, Machiels K, Falony G, Ferrante M, Van Assche G, Raes J, Vermeire S. P854 Quantitative microbiome profiling changes the described dysbiotic state in inflammatory bowel disease Journal of Crohn's and Colitis. 12: S548-S549. DOI: 10.1093/Ecco-Jcc/Jjx180.981 |
0.598 |
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| 2017 |
Vandeputte D, Kathagen G, D'hoe K, Vieira-Silva S, Valles-Colomer M, Sabino J, Wang J, Tito RY, De Commer L, Darzi Y, Vermeire S, Falony G, Raes J. Quantitative microbiome profiling links gut community variation to microbial load. Nature. PMID 29143816 DOI: 10.1038/Nature24460 |
0.694 |
|
| 2017 |
Raes J. Microbiology: Crowdsourcing Earth's microbes. Nature. PMID 29088699 DOI: 10.1038/Nature24756 |
0.304 |
|
| 2017 |
Vandeputte D, Tito RY, Vanleeuwen R, Falony G, Raes J. Practical considerations for large-scale gut microbiome studies. Fems Microbiology Reviews. 41: S154-S167. PMID 28830090 DOI: 10.1093/Femsre/Fux027 |
0.635 |
|
| 2017 |
Mamantopoulos M, Ronchi F, Van Hauwermeiren F, Vieira-Silva S, Yilmaz B, Martens L, Saeys Y, Drexler SK, Yazdi AS, Raes J, Lamkanfi M, McCoy KD, Wullaert A. Nlrp6- and ASC-Dependent Inflammasomes Do Not Shape the Commensal Gut Microbiota Composition. Immunity. PMID 28801232 DOI: 10.1016/J.Immuni.2017.07.011 |
0.365 |
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| 2017 |
Sommer F, Anderson JM, Bharti R, Raes J, Rosenstiel P. The resilience of the intestinal microbiota influences health and disease. Nature Reviews. Microbiology. PMID 28626231 DOI: 10.1038/Nrmicro.2017.58 |
0.404 |
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| 2017 |
Andersen V, Holmskov U, Sørensen SB, Jawhara M, Andersen KW, Bygum A, Hvid L, Grauslund J, Wied J, Glerup H, Fredberg U, Villadsen JA, Kjær SG, Fallingborg J, Moghadd SAGR, ... ... Raes J, et al. A Proposal for a Study on Treatment Selection and Lifestyle Recommendations in Chronic Inflammatory Diseases: A Danish Multidisciplinary Collaboration on Prognostic Factors and Personalised Medicine. Nutrients. 9. PMID 28505128 DOI: 10.3390/Nu9050499 |
0.301 |
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| 2017 |
Gonze D, Lahti L, Raes J, Faust K. Multi-stability and the origin of microbial community types. The Isme Journal. PMID 28475180 DOI: 10.1038/Ismej.2017.60 |
0.571 |
|
| 2017 |
Forslund K, Hildebrand F, Nielsen T, Falony G, Le Chatelier E, Sunagawa S, Prifti E, Vieira-Silva S, Gudmundsdottir V, Pedersen HK, Arumugam M, Kristiansen K, Voigt AY, Vestergaard H, Hercog R, ... ... Raes J, et al. Corrigendum: Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. Nature. 545: 116. PMID 28470190 DOI: 10.1038/Nature22318 |
0.764 |
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| 2017 |
Mysara M, Njima M, Leys N, Raes J, Monsieurs P. From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing data. Gigascience. 6: 1-10. PMID 28369460 DOI: 10.1093/Gigascience/Giw017 |
0.323 |
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| 2017 |
Mysara M, Vandamme P, Props R, Kerckhof FM, Leys N, Boon N, Raes J, Monsieurs P. Reconciliation between Operational Taxonomic Units and Species Boundaries. Fems Microbiology Ecology. PMID 28334218 DOI: 10.1093/Femsec/Fix029 |
0.33 |
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| 2017 |
Vandeputte D, Falony G, Vieira-Silva S, Wang J, Sailer M, Theis S, Verbeke K, Raes J. Prebiotic inulin-type fructans induce specific changes in the human gut microbiota. Gut. PMID 28213610 DOI: 10.1136/Gutjnl-2016-313271 |
0.656 |
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| 2017 |
Vandeputte D, Falony G, D'hoe K, Vieira-Silva S, Raes J. Water activity does not shape the microbiota in the human colon. Gut. PMID 28062523 DOI: 10.1136/Gutjnl-2016-313530 |
0.644 |
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| 2017 |
Vancamelbeke M, Sabino J, Deroover L, Vandermeulen G, Luypaerts A, Ferrante M, Falony G, Vieira-Silva S, Verbeke K, Raes J, Cleynen I, Vermeire S. P774 Metagenomics and metabolomics of patients with inflammatory bowel disease and their unaffected relatives Journal of Crohn's and Colitis. 11: S476-S477. DOI: 10.1093/Ecco-Jcc/Jjx002.895 |
0.6 |
|
| 2017 |
Sabino J, Vieira-Silva S, Machiels K, Joossens M, Falony G, Ferrante M, Van Assche G, Van Der Merwe S, Matthys C, Raes J, Vermeire S. P767 The FIT trial: anti-inflammatory dietary intervention effects on the intestinal microbiota Journal of Crohn's and Colitis. 11: S473-S473. DOI: 10.1093/Ecco-Jcc/Jjx002.888 |
0.621 |
|
| 2017 |
Vancamelbeke M, Sabino J, Deroover L, Vandermeulen G, Luypaerts A, Ferrante M, Falony G, Vieira-Silva S, Verbeke K, Raes J, Cleynen I, Vermeire S. Profiling of the Fecal Microbiota and Metabolome in Patients with Inflammatory Bowel Disease and their Unaffected Relatives Gastroenterology. 152: S991. DOI: 10.1016/S0016-5085(17)33359-0 |
0.622 |
|
| 2017 |
Sabino J, Vieira-Silva S, Machiels K, Joossens M, Falony G, Ferrante M, Van Assche GA, Van Der Merwe S, Matthys C, Raes J, Vermeire S. Therapeutic Manipulation of the Gut Microbiota Through Diet to Reduce Intestinal Inflammation: Results from the FIT Trial Gastroenterology. 152: S1. DOI: 10.1016/S0016-5085(17)30385-2 |
0.626 |
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| 2017 |
Wang H, Wei Z, Mei L, Gu J, Yin S, Faust K, Raes J, Deng Y, Wang Y, Shen Q, Yin S. Combined use of network inference tools identifies ecologically meaningful bacterial associations in a paddy soil Soil Biology and Biochemistry. 105: 227-235. DOI: 10.1016/J.Soilbio.2016.11.029 |
0.594 |
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| 2016 |
Pérez-Valera E, Goberna M, Faust K, Raes J, García C, Verdú M. Fire modifies the phylogenetic structure of soil bacterial co-occurrence networks. Environmental Microbiology. PMID 27871135 DOI: 10.1111/1462-2920.13609 |
0.586 |
|
| 2016 |
Faust K, Raes J. CoNet app: inference of biological association networks using Cytoscape. F1000research. 5: 1519. PMID 27853510 DOI: 10.12688/F1000Research.9050.2 |
0.583 |
|
| 2016 |
Eeckhaut V, Wang J, Van Parys A, Haesebrouck F, Joossens M, Falony G, Raes J, Ducatelle R, Van Immerseel F. The Probiotic Butyricicoccus pullicaecorum Reduces Feed Conversion and Protects from Potentially Harmful Intestinal Microorganisms and Necrotic Enteritis in Broilers. Frontiers in Microbiology. 7: 1416. PMID 27708624 DOI: 10.3389/Fmicb.2016.01416 |
0.611 |
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| 2016 |
Beaumont M, Goodrich JK, Jackson MA, Yet I, Davenport ER, Vieira-Silva S, Debelius J, Pallister T, Mangino M, Raes J, Knight R, Clark AG, Ley RE, Spector TD, Bell JT. Heritable components of the human fecal microbiome are associated with visceral fat. Genome Biology. 17: 189. PMID 27666579 DOI: 10.1186/S13059-016-1052-7 |
0.338 |
|
| 2016 |
Vieira-Silva S, Falony G, Darzi Y, Lima-Mendez G, Garcia Yunta R, Okuda S, Vandeputte D, Valles-Colomer M, Hildebrand F, Chaffron S, Raes J. Species-function relationships shape ecological properties of the human gut microbiome. Nature Microbiology. 1: 16088. PMID 27573110 DOI: 10.1038/Nmicrobiol.2016.88 |
0.753 |
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| 2016 |
Holvoet T, Joossens M, Wang J, Boelens J, Verhasselt B, Laukens D, van Vlierberghe H, Hindryckx P, De Vos M, De Looze D, Raes J. Assessment of faecal microbial transfer in irritable bowel syndrome with severe bloating. Gut. PMID 27511198 DOI: 10.1136/Gutjnl-2016-312513 |
0.326 |
|
| 2016 |
Pedersen HK, Gudmundsdottir V, Nielsen HB, Hyotylainen T, Nielsen T, Jensen BA, Forslund K, Hildebrand F, Prifti E, Falony G, Le Chatelier E, Levenez F, Doré J, Mattila I, Plichta DR, ... ... Raes J, et al. Human gut microbes impact host serum metabolome and insulin sensitivity. Nature. PMID 27409811 DOI: 10.1038/Nature18646 |
0.774 |
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| 2016 |
Darzi Y, Jiao Y, Hasegawa M, Moon H, Núñez G, Inohara N, Raes J. The Genomic Sequence of the Oral Pathobiont Strain NI1060 Reveals Unique Strategies for Bacterial Competition and Pathogenicity. Plos One. 11: e0158866. PMID 27409077 DOI: 10.1371/Journal.Pone.0158866 |
0.358 |
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| 2016 |
Tito RY, Cypers H, Joossens M, Varkas G, Van Praet L, Glorieus E, Van den Bosch F, De Vos M, Raes J, Elewaut D. Dialister as microbial marker of disease activity in spondyloarthritis. Arthritis & Rheumatology (Hoboken, N.J.). PMID 27390077 DOI: 10.1002/Art.39802 |
0.302 |
|
| 2016 |
Günther S, Faust K, Schumann J, Harms H, Raes J, Müller S. Species-sorting and mass-transfer paradigms control managed natural metacommunities. Environmental Microbiology. PMID 27338005 DOI: 10.1111/1462-2920.13402 |
0.585 |
|
| 2016 |
Faust K, Raes J. Host-microbe interaction: Rules of the game for microbiota. Nature. 534: 182-3. PMID 27279206 DOI: 10.1038/534182A |
0.589 |
|
| 2016 |
Sabino J, Vieira-Silva S, Machiels K, Joossens M, Falony G, Ballet V, Ferrante M, Van Assche G, Van der Merwe S, Vermeire S, Raes J. Primary sclerosing cholangitis is characterised by intestinal dysbiosis independent from IBD. Gut. PMID 27207975 DOI: 10.1136/Gutjnl-2015-311004 |
0.63 |
|
| 2016 |
Mattiello F, Verbist B, Faust K, Raes J, Shannon WD, Bijnens L, Thas O. A web application for sample size and power calculation in case-control microbiome studies. Bioinformatics (Oxford, England). PMID 27153704 DOI: 10.1093/Bioinformatics/Btw099 |
0.538 |
|
| 2016 |
Mysara M, Leys N, Raes J, Monsieurs P. IPED: a highly efficient denoising tool for Illumina MiSeq Paired-end 16S rRNA gene amplicon sequencing data. Bmc Bioinformatics. 17: 192. PMID 27130479 DOI: 10.1186/S12859-016-1061-2 |
0.312 |
|
| 2016 |
Zhernakova A, Kurilshikov A, Bonder MJ, Tigchelaar EF, Schirmer M, Vatanen T, Mujagic Z, Vila AV, Falony G, Vieira-Silva S, Wang J, Imhann F, Brandsma E, Jankipersadsing SA, Joossens M, ... ... Raes J, et al. Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity. Science (New York, N.Y.). 352: 565-9. PMID 27126040 DOI: 10.1126/Science.Aad3369 |
0.757 |
|
| 2016 |
Falony G, Joossens M, Vieira-Silva S, Wang J, Darzi Y, Faust K, Kurilshikov A, Bonder MJ, Valles-Colomer M, Vandeputte D, Tito RY, Chaffron S, Rymenans L, Verspecht C, De Sutter L, ... ... Raes J, et al. Population-level analysis of gut microbiome variation. Science (New York, N.Y.). 352: 560-4. PMID 27126039 DOI: 10.1126/Science.Aad3503 |
0.742 |
|
| 2016 |
Kolmeder CA, Salojärvi J, Ritari J, de Been M, Raes J, Falony G, Vieira-Silva S, Kekkonen RA, Corthals GL, Palva A, Salonen A, de Vos WM. Faecal Metaproteomic Analysis Reveals a Personalized and Stable Functional Microbiome and Limited Effects of a Probiotic Intervention in Adults. Plos One. 11: e0153294. PMID 27070903 DOI: 10.1371/Journal.Pone.0153294 |
0.674 |
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| 2016 |
Cornejo-Castillo FM, Cabello AM, Salazar G, Sánchez-Baracaldo P, Lima-Mendez G, Hingamp P, Alberti A, Sunagawa S, Bork P, de Vargas C, Raes J, Bowler C, Wincker P, Zehr JP, Gasol JM, et al. Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton. Nature Communications. 7: 11071. PMID 27002549 DOI: 10.1038/Ncomms11071 |
0.563 |
|
| 2016 |
Weiss S, Van Treuren W, Lozupone C, Faust K, Friedman J, Deng Y, Xia LC, Xu ZZ, Ursell L, Alm EJ, Birmingham A, Cram JA, Fuhrman JA, Raes J, Sun F, et al. Correlation detection strategies in microbial data sets vary widely in sensitivity and precision. The Isme Journal. PMID 26905627 DOI: 10.1038/Ismej.2015.235 |
0.597 |
|
| 2016 |
Guidi L, Chaffron S, Bittner L, Eveillard D, Larhlimi A, Roux S, Darzi Y, Audic S, Berline L, Brum J, Coelho LP, Espinoza JC, Malviya S, Sunagawa S, Dimier C, ... ... Raes J, et al. Plankton networks driving carbon export in the oligotrophic ocean. Nature. PMID 26863193 DOI: 10.1038/Nature16942 |
0.731 |
|
| 2016 |
Valles-Colomer M, Darzi Y, Vieira-Silva S, Falony G, Joossens M, Raes J. Meta-omics in IBD research: applications, challenges and guidelines. Journal of Crohn's & Colitis. PMID 26802086 DOI: 10.1093/Ecco-Jcc/Jjw024 |
0.627 |
|
| 2016 |
Sabino J, Vieira-Silva S, Cleynen I, Machiels K, Joossens M, Falony G, Wang J, Ballet V, Ferrante M, Van Assche G, Van Der Merwe S, Raes J, Vermeire S. Tu1713 Host-Microbiome Interactions in Primary Sclerosing Cholangitis Gastroenterology. 150: S927-S928. DOI: 10.1016/S0016-5085(16)33144-4 |
0.605 |
|
| 2016 |
Sabino J, Vieira-Silva S, Cleynen I, Nys K, Machiels K, Joossens M, Falony G, Wang J, Ballet V, Ferrante M, Van Assche G, Van Der Merwe S, Raes J, Vermeire S. Su1909 Genetic Risk for Crohn's Disease has Little Impact on Intestinal Microbiota Composition Gastroenterology. 150: S585-S586. DOI: 10.1016/S0016-5085(16)32008-X |
0.62 |
|
| 2015 |
Edwards RA, McNair K, Faust K, Raes J, Dutilh BE. Computational approaches to predict bacteriophage-host relationships. Fems Microbiology Reviews. PMID 26657537 DOI: 10.1093/Femsre/Fuv048 |
0.58 |
|
| 2015 |
Forslund K, Hildebrand F, Nielsen T, Falony G, Le Chatelier E, Sunagawa S, Prifti E, Vieira-Silva S, Gudmundsdottir V, Krogh Pedersen H, Arumugam M, Kristiansen K, Yvonne Voigt A, Vestergaard H, Hercog R, ... ... Raes J, et al. Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. Nature. PMID 26633628 DOI: 10.1038/Nature15766 |
0.811 |
|
| 2015 |
Darzi Y, Falony G, Vieira-Silva S, Raes J. Towards biome-specific analysis of meta-omics data. The Isme Journal. PMID 26623543 DOI: 10.1038/Ismej.2015.188 |
0.628 |
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| 2015 |
Forslund K, Hildebrand F, Nielsen T, Falony G, Le Chatelier E, Sunagawa S, Prifti E, Vieira-Silva S, Gudmundsdottir V, Krogh Pedersen H, Arumugam M, Kristiansen K, Yvonne Voigt A, Vestergaard H, Hercog R, ... ... Raes J, et al. Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. Nature. PMID 26618873 DOI: 10.1038/nature15766 |
0.78 |
|
| 2015 |
Faust K, Lima-Mendez G, Lerat JS, Sathirapongsasuti JF, Knight R, Huttenhower C, Lenaerts T, Raes J. Cross-biome comparison of microbial association networks. Frontiers in Microbiology. 6: 1200. PMID 26579106 DOI: 10.3389/Fmicb.2015.01200 |
0.589 |
|
| 2015 |
Vermeire S, Joossens M, Verbeke K, Wang J, Machiels K, Sabino J, Ferrante M, Van Assche G, Rutgeerts P, Raes J. Donor species richness determines fecal microbiota transplantation success in inflammatory bowel disease. Journal of Crohn's & Colitis. PMID 26519463 DOI: 10.1093/Ecco-Jcc/Jjv203 |
0.301 |
|
| 2015 |
Laukens D, Brinkman BM, Raes J, De Vos M, Vandenabeele P. Heterogeneity of the gut microbiome in mice: guidelines for optimizing experimental design. Fems Microbiology Reviews. PMID 26323480 DOI: 10.1093/Femsre/Fuv036 |
0.375 |
|
| 2015 |
Falony G, Vieira-Silva S, Raes J. Microbiology Meets Big Data: The Case of Gut Microbiota-Derived Trimethylamine. Annual Review of Microbiology. 69: 305-21. PMID 26274026 DOI: 10.1146/Annurev-Micro-091014-104422 |
0.67 |
|
| 2015 |
Verbeke KA, Boobis AR, Chiodini A, Edwards CA, Franck A, Kleerebezem M, Nauta A, Raes J, van Tol EA, Tuohy KM. Towards microbial fermentation metabolites as markers for health benefits of prebiotics. Nutrition Research Reviews. 28: 42-66. PMID 26156216 DOI: 10.1017/S0954422415000037 |
0.345 |
|
| 2015 |
Vandeputte D, Falony G, Vieira-Silva S, Tito RY, Joossens M, Raes J. Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates. Gut. PMID 26069274 DOI: 10.1136/Gutjnl-2015-309618 |
0.661 |
|
| 2015 |
Faust K, Lahti L, Gonze D, de Vos WM, Raes J. Metagenomics meets time series analysis: unraveling microbial community dynamics. Current Opinion in Microbiology. 25: 56-66. PMID 26005845 DOI: 10.1016/J.Mib.2015.04.004 |
0.6 |
|
| 2015 |
Lima-Mendez G, Faust K, Henry N, Decelle J, Colin S, Carcillo F, Chaffron S, Ignacio-Espinosa JC, Roux S, Vincent F, Bittner L, Darzi Y, Wang J, Audic S, Berline L, ... ... Raes J, et al. Ocean plankton. Determinants of community structure in the global plankton interactome. Science (New York, N.Y.). 348: 1262073. PMID 25999517 DOI: 10.1126/Science.1262073 |
0.695 |
|
| 2015 |
de Vargas C, Audic S, Henry N, Decelle J, Mahé F, Logares R, Lara E, Berney C, Le Bescot N, Probert I, Carmichael M, Poulain J, Romac S, Colin S, Aury JM, ... ... Raes J, et al. Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean. Science (New York, N.Y.). 348: 1261605. PMID 25999516 DOI: 10.1126/Science.1261605 |
0.594 |
|
| 2015 |
Sunagawa S, Coelho LP, Chaffron S, Kultima JR, Labadie K, Salazar G, Djahanschiri B, Zeller G, Mende DR, Alberti A, Cornejo-Castillo FM, Costea PI, Cruaud C, d'Ovidio F, Engelen S, ... ... Raes J, et al. Ocean plankton. Structure and function of the global ocean microbiome. Science (New York, N.Y.). 348: 1261359. PMID 25999513 DOI: 10.1126/Science.1261359 |
0.81 |
|
| 2015 |
Geirnaert A, Wang J, Tinck M, Steyaert A, Van den Abbeele P, Eeckhaut V, Vilchez-Vargas R, Falony G, Laukens D, De Vos M, Van Immerseel F, Raes J, Boon N, Van de Wiele T. Interindividual differences in response to treatment with butyrate-producing Butyricicoccus pullicaecorum 25-3T studied in an in vitro gut model. Fems Microbiology Ecology. 91. PMID 25999470 DOI: 10.1093/Femsec/Fiv054 |
0.652 |
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| 2015 |
Navarrete AA, Tsai SM, Mendes LW, Faust K, de Hollander M, Cassman NA, Raes J, van Veen JA, Kuramae EE. Soil microbiome responses to the short-term effects of Amazonian deforestation. Molecular Ecology. 24: 2433-48. PMID 25809788 DOI: 10.1111/Mec.13172 |
0.546 |
|
| 2015 |
Rajili?-Stojanovi? M, Jonkers DM, Salonen A, Hanevik K, Raes J, Jalanka J, de Vos WM, Manichanh C, Golic N, Enck P, Philippou E, Iraqi FA, Clarke G, Spiller RC, Penders J. Intestinal microbiota and diet in IBS: causes, consequences, or epiphenomena? The American Journal of Gastroenterology. 110: 278-87. PMID 25623659 DOI: 10.1038/Ajg.2014.427 |
0.34 |
|
| 2015 |
Nguyen TL, Vieira-Silva S, Liston A, Raes J. How informative is the mouse for human gut microbiota research? Disease Models & Mechanisms. 8: 1-16. PMID 25561744 DOI: 10.1242/Dmm.017400 |
0.379 |
|
| 2015 |
Mysara M, Saeys Y, Leys N, Raes J, Monsieurs P. CATCh, an ensemble classifier for chimera detection in 16S rRNA sequencing studies. Applied and Environmental Microbiology. 81: 1573-84. PMID 25527546 DOI: 10.1128/Aem.02896-14 |
0.322 |
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| 2015 |
Vandeputte D, Vanleeuwen R, Falony G, Joossens M, Raes J. Perspectives and pitfalls of microbiome research through home based fecal sampling: the Flemish Gut Flora Project experience Archives of Public Health. 73. DOI: 10.1186/2049-3258-73-S1-P33 |
0.612 |
|
| 2015 |
Sabino J, Vieira-Silva S, Machiels K, Joossens M, Falony G, Ballet V, Ferrante M, Van Assche GA, Van der Merwe S, Raes J, Vermeire S. 262 Intestinal Dysbiosis in Patients With Primary Sclerosing Cholangitis Gastroenterology. 148: S-60. DOI: 10.1016/S0016-5085(15)30207-9 |
0.59 |
|
| 2015 |
Marzorati M, Qin B, Hildebrand F, Klosterbuer A, Roughead Z, Roessle C, Rochat F, Raes J, Possemiers S. Addition of acacia gum to a FOS/inulin blend improves its fermentation profile in the Simulator of the Human Intestinal Microbial Ecosystem (SHIME®) Journal of Functional Foods. 16: 211-222. DOI: 10.1016/J.Jff.2015.04.039 |
0.576 |
|
| 2014 |
Hildebrand F, Tadeo R, Voigt AY, Bork P, Raes J. LotuS: an efficient and user-friendly OTU processing pipeline. Microbiome. 2: 30. PMID 27367037 DOI: 10.1186/2049-2618-2-30 |
0.696 |
|
| 2014 |
Nielsen HB, Almeida M, Juncker AS, Rasmussen S, Li J, Sunagawa S, Plichta DR, Gautier L, Pedersen AG, Le Chatelier E, Pelletier E, Bonde I, Nielsen T, Manichanh C, Arumugam M, ... ... Raes J, et al. Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. Nature Biotechnology. 32: 822-8. PMID 24997787 DOI: 10.1038/Nbt.2939 |
0.803 |
|
| 2014 |
Kubica M, Hildebrand F, Brinkman BM, Goossens D, Del Favero J, Vercammen K, Cornelis P, Schröder JM, Vandenabeele P, Raes J, Declercq W. The skin microbiome of caspase-14-deficient mice shows mild dysbiosis. Experimental Dermatology. 23: 561-7. PMID 24863253 DOI: 10.1111/Exd.12458 |
0.528 |
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| 2014 |
Ye L, Matthijs S, Bodilis J, Hildebrand F, Raes J, Cornelis P. Analysis of the draft genome of Pseudomonas fluorescens ATCC17400 indicates a capacity to take up iron from a wide range of sources, including different exogenous pyoverdines. Biometals : An International Journal On the Role of Metal Ions in Biology, Biochemistry, and Medicine. 27: 633-44. PMID 24756978 DOI: 10.1007/S10534-014-9734-7 |
0.519 |
|
| 2014 |
Logares R, Sunagawa S, Salazar G, Cornejo-Castillo FM, Ferrera I, Sarmento H, Hingamp P, Ogata H, de Vargas C, Lima-Mendez G, Raes J, Poulain J, Jaillon O, Wincker P, Kandels-Lewis S, et al. Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities. Environmental Microbiology. 16: 2659-71. PMID 24102695 DOI: 10.1111/1462-2920.12250 |
0.598 |
|
| 2014 |
Faust K, Raes J. Comparative analysis of biome-specific microbial association networks F1000research. 5. DOI: 10.7490/F1000Research.1094770.1 |
0.544 |
|
| 2014 |
Raes J. The gut microbiome - a new target for understanding, diagnosing and treating disease Archives of Public Health. 72. DOI: 10.1186/2049-3258-72-S1-K3 |
0.43 |
|
| 2014 |
Hildebrand F, Tito RY, Voigt AY, Bork P, Raes J. Correction to: LotuS: An efficient and user-friendly OTU processing pipeline [Microbiome, 2, (2014), 30] Microbiome. 2. DOI: 10.1186/2049-2618-2-37 |
0.629 |
|
| 2014 |
Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto J, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, et al. Addendum: Enterotypes of the human gut microbiome Nature. 506: 516-516. DOI: 10.1038/Nature13075 |
0.785 |
|
| 2014 |
Hildebrand F, Tadeo R, Voigt AY, Bork P, Raes J. LotuS: An efficient and user-friendly OTU processing pipeline Microbiome. 2. |
0.591 |
|
| 2013 |
Brinkman BM, Becker A, Ayiseh RB, Hildebrand F, Raes J, Huys G, Vandenabeele P. Gut microbiota affects sensitivity to acute DSS-induced colitis independently of host genotype. Inflammatory Bowel Diseases. 19: 2560-7. PMID 24105395 DOI: 10.1097/Mib.0B013E3182A8759A |
0.524 |
|
| 2013 |
Le Chatelier E, Nielsen T, Qin J, Prifti E, Hildebrand F, Falony G, Almeida M, Arumugam M, Batto JM, Kennedy S, Leonard P, Li J, Burgdorf K, Grarup N, Jørgensen T, ... ... Raes J, et al. Richness of human gut microbiome correlates with metabolic markers. Nature. 500: 541-6. PMID 23985870 DOI: 10.1038/Nature12506 |
0.794 |
|
| 2013 |
Ye L, Ballet S, Hildebrand F, Laus G, Guillemyn K, Raes J, Matthijs S, Martins J, Cornelis P. A combinatorial approach to the structure elucidation of a pyoverdine siderophore produced by a Pseudomonas putida isolate and the use of pyoverdine as a taxonomic marker for typing P. putida subspecies. Biometals : An International Journal On the Role of Metal Ions in Biology, Biochemistry, and Medicine. 26: 561-75. PMID 23877277 DOI: 10.1007/S10534-013-9653-Z |
0.508 |
|
| 2013 |
Hingamp P, Grimsley N, Acinas SG, Clerissi C, Subirana L, Poulain J, Ferrera I, Sarmento H, Villar E, Lima-Mendez G, Faust K, Sunagawa S, Claverie JM, Moreau H, Desdevises Y, ... ... Raes J, et al. Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes. The Isme Journal. 7: 1678-95. PMID 23575371 DOI: 10.1038/Ismej.2013.59 |
0.718 |
|
| 2013 |
Hildebrand F, Nguyen TL, Brinkman B, Yunta RG, Cauwe B, Vandenabeele P, Liston A, Raes J. Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice. Genome Biology. 14: R4. PMID 23347395 DOI: 10.1186/Gb-2013-14-1-R4 |
0.572 |
|
| 2013 |
Jacobsen UP, Nielsen HB, Hildebrand F, Raes J, Sicheritz-Ponten T, Kouskoumvekaki I, Panagiotou G. The chemical interactome space between the human host and the genetically defined gut metabotypes. The Isme Journal. 7: 730-42. PMID 23178670 DOI: 10.1038/Ismej.2012.141 |
0.622 |
|
| 2013 |
Lepage P, Leclerc MC, Joossens M, Mondot S, Blottière HM, Raes J, Ehrlich D, Doré J. A metagenomic insight into our gut's microbiome. Gut. 62: 146-58. PMID 22525886 DOI: 10.1136/Gutjnl-2011-301805 |
0.417 |
|
| 2012 |
Erickson AR, Cantarel BL, Lamendella R, Darzi Y, Mongodin EF, Pan C, Shah M, Halfvarson J, Tysk C, Henrissat B, Raes J, Verberkmoes NC, Fraser CM, Hettich RL, Jansson JK. Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease. Plos One. 7: e49138. PMID 23209564 DOI: 10.1371/Journal.Pone.0049138 |
0.366 |
|
| 2012 |
Qin J, Li Y, Cai Z, Li S, Zhu J, Zhang F, Liang S, Zhang W, Guan Y, Shen D, Peng Y, Zhang D, Jie Z, Wu W, Qin Y, ... ... Raes J, et al. A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature. 490: 55-60. PMID 23023125 DOI: 10.1038/Nature11450 |
0.652 |
|
| 2012 |
Hildebrand F, Ebersbach T, Nielsen HB, Li X, Sonne SB, Bertalan M, Dimitrov P, Madsen L, Qin J, Wang J, Raes J, Kristiansen K, Licht TR. A comparative analysis of the intestinal metagenomes present in guinea pigs (Cavia porcellus) and humans (Homo sapiens). Bmc Genomics. 13: 514. PMID 23020652 DOI: 10.1186/1471-2164-13-514 |
0.6 |
|
| 2012 |
Faust K, Sathirapongsasuti JF, Izard J, Segata N, Gevers D, Raes J, Huttenhower C. Microbial co-occurrence relationships in the human microbiome. Plos Computational Biology. 8: e1002606. PMID 22807668 DOI: 10.1371/Journal.Pcbi.1002606 |
0.748 |
|
| 2012 |
Faust K, Raes J. Microbial interactions: from networks to models. Nature Reviews. Microbiology. 10: 538-50. PMID 22796884 DOI: 10.1038/Nrmicro2832 |
0.571 |
|
| 2012 |
Lozupone C, Faust K, Raes J, Faith JJ, Frank DN, Zaneveld J, Gordon JI, Knight R. Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts. Genome Research. 22: 1974-84. PMID 22665442 DOI: 10.1101/Gr.138198.112 |
0.647 |
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| 2012 |
Yamada T, Waller AS, Raes J, Zelezniak A, Perchat N, Perret A, Salanoubat M, Patil KR, Weissenbach J, Bork P. Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours. Molecular Systems Biology. 8: 581. PMID 22569339 DOI: 10.1038/Msb.2012.13 |
0.739 |
|
| 2012 |
Mende DR, Waller AS, Sunagawa S, Järvelin AI, Chan MM, Arumugam M, Raes J, Bork P. Assessment of metagenomic assembly using simulated next generation sequencing data. Plos One. 7: e31386. PMID 22384016 DOI: 10.1371/Journal.Pone.0031386 |
0.793 |
|
| 2012 |
Zoetendal EG, Raes J, van den Bogert B, Arumugam M, Booijink CC, Troost FJ, Bork P, Wels M, de Vos WM, Kleerebezem M. The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates. The Isme Journal. 6: 1415-26. PMID 22258098 DOI: 10.1038/Ismej.2011.212 |
0.723 |
|
| 2012 |
Vermeire S, Joossens M, Verbeke K, Hildebrand F, Machiels K, Van den Broeck K, Van Assche G, Rutgeerts PJ, Raes J. Sa1922 Pilot Study on the Safety and Efficacy of Faecal Microbiota Transplantation in Refractory Crohn's Disease Gastroenterology. 142: S-360. DOI: 10.1016/S0016-5085(12)61356-0 |
0.499 |
|
| 2011 |
Karsenti E, Acinas SG, Bork P, Bowler C, De Vargas C, Raes J, Sullivan M, Arendt D, Benzoni F, Claverie JM, Follows M, Gorsky G, Hingamp P, Iudicone D, Jaillon O, et al. A holistic approach to marine eco-systems biology. Plos Biology. 9: e1001177. PMID 22028628 DOI: 10.1371/Journal.Pbio.1001177 |
0.555 |
|
| 2011 |
Brinkman BM, Hildebrand F, Kubica M, Goosens D, Del Favero J, Declercq W, Raes J, Vandenabeele P. Caspase deficiency alters the murine gut microbiome. Cell Death & Disease. 2: e220. PMID 22012254 DOI: 10.1038/Cddis.2011.101 |
0.543 |
|
| 2011 |
Creevey CJ, Doerks T, Fitzpatrick DA, Raes J, Bork P. Universally distributed single-copy genes indicate a constant rate of horizontal transfer. Plos One. 6: e22099. PMID 21850220 DOI: 10.1371/Journal.Pone.0022099 |
0.781 |
|
| 2011 |
Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, ... ... Raes J, et al. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology. 29: 415-20. PMID 21552244 DOI: 10.1038/Nbt.1823 |
0.759 |
|
| 2011 |
Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, et al. Enterotypes of the human gut microbiome. Nature. 473: 174-80. PMID 21508958 DOI: 10.1038/Nature09944 |
0.81 |
|
| 2011 |
Raes J, Letunic I, Yamada T, Jensen LJ, Bork P. Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data. Molecular Systems Biology. 7: 473. PMID 21407210 DOI: 10.1038/Msb.2011.6 |
0.8 |
|
| 2011 |
Arumugam M, Raes J, Pelletier E, Paslier DL, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, et al. Erratum: Enterotypes of the human gut microbiome (Nature (2011) 473 (174-180)) Nature. 474: 666-666. DOI: 10.1038/Nature10187 |
0.773 |
|
| 2010 |
Gilbert JA, Meyer F, Antonopoulos D, Balaji P, Brown CT, Brown CT, Desai N, Eisen JA, Evers D, Field D, Feng W, Huson D, Jansson J, Knight R, Knight J, ... ... Raes J, et al. Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project. Standards in Genomic Sciences. 3: 243-8. PMID 21304727 DOI: 10.4056/Sigs.1433550 |
0.322 |
|
| 2010 |
Harrington ED, Arumugam M, Raes J, Bork P, Relman DA. SmashCell: a software framework for the analysis of single-cell amplified genome sequences. Bioinformatics (Oxford, England). 26: 2979-80. PMID 20966005 DOI: 10.1093/Bioinformatics/Btq564 |
0.744 |
|
| 2010 |
Arumugam M, Harrington ED, Foerstner KU, Raes J, Bork P. SmashCommunity: a metagenomic annotation and analysis tool. Bioinformatics (Oxford, England). 26: 2977-8. PMID 20959381 DOI: 10.1093/Bioinformatics/Btq536 |
0.754 |
|
| 2010 |
Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, Nielsen T, Pons N, Levenez F, Yamada T, Mende DR, Li J, Xu J, Li S, Li D, et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature. 464: 59-65. PMID 20203603 DOI: 10.1038/Nature08821 |
0.812 |
|
| 2010 |
Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, ... ... Raes J, et al. The “Minimum Information about an ENvironmental Sequence” (MIENS) specification Nature Precedings. 5: 1-1. DOI: 10.1038/Npre.2010.5252.1 |
0.574 |
|
| 2009 |
Gianoulis TA, Raes J, Patel PV, Bjornson R, Korbel JO, Letunic I, Yamada T, Paccanaro A, Jensen LJ, Snyder M, Bork P, Gerstein MB. Quantifying environmental adaptation of metabolic pathways in metagenomics. Proceedings of the National Academy of Sciences of the United States of America. 106: 1374-9. PMID 19164758 DOI: 10.1073/Pnas.0808022106 |
0.796 |
|
| 2009 |
Singh AH, Doerks T, Letunic I, Raes J, Bork P. Discovering functional novelty in metagenomes: examples from light-mediated processes. Journal of Bacteriology. 191: 32-41. PMID 18849420 DOI: 10.1128/Jb.01084-08 |
0.783 |
|
| 2008 |
Foerstner KU, Doerks T, Muller J, Raes J, Bork P. A nitrile hydratase in the eukaryote Monosiga brevicollis. Plos One. 3: e3976. PMID 19096720 DOI: 10.1371/Journal.Pone.0003976 |
0.786 |
|
| 2008 |
Hooper SD, Raes J, Foerstner KU, Harrington ED, Dalevi D, Bork P. A molecular study of microbe transfer between distant environments. Plos One. 3: e2607. PMID 18612393 DOI: 10.1371/Journal.Pone.0002607 |
0.793 |
|
| 2008 |
Raes J, Bork P. Molecular eco-systems biology: towards an understanding of community function. Nature Reviews. Microbiology. 6: 693-9. PMID 18587409 DOI: 10.1038/Nrmicro1935 |
0.6 |
|
| 2008 |
Kunin V, Raes J, Harris JK, Spear JR, Walker JJ, Ivanova N, von Mering C, Bebout BM, Pace NR, Bork P, Hugenholtz P. Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat. Molecular Systems Biology. 4: 198. PMID 18523433 DOI: 10.1038/Msb.2008.35 |
0.696 |
|
| 2007 |
Raes J, Foerstner KU, Bork P. Get the most out of your metagenome: computational analysis of environmental sequence data. Current Opinion in Microbiology. 10: 490-8. PMID 17936679 DOI: 10.1016/J.Mib.2007.09.001 |
0.611 |
|
| 2007 |
Harrington ED, Singh AH, Doerks T, Letunic I, von Mering C, Jensen LJ, Raes J, Bork P. Quantitative assessment of protein function prediction from metagenomics shotgun sequences. Proceedings of the National Academy of Sciences of the United States of America. 104: 13913-8. PMID 17717083 DOI: 10.1073/Pnas.0702636104 |
0.788 |
|
| 2007 |
Raes J, Harrington ED, Singh AH, Bork P. Protein function space: viewing the limits or limited by our view? Current Opinion in Structural Biology. 17: 362-9. PMID 17574832 DOI: 10.1016/J.Sbi.2007.05.010 |
0.729 |
|
| 2007 |
von Mering C, Hugenholtz P, Raes J, Tringe SG, Doerks T, Jensen LJ, Ward N, Bork P. Quantitative phylogenetic assessment of microbial communities in diverse environments. Science (New York, N.Y.). 315: 1126-30. PMID 17272687 DOI: 10.1126/Science.1133420 |
0.803 |
|
| 2007 |
Raes J, Korbel JO, Lercher MJ, von Mering C, Bork P. Prediction of effective genome size in metagenomic samples. Genome Biology. 8: R10. PMID 17224063 DOI: 10.1186/Gb-2007-8-1-R10 |
0.766 |
|
| 2006 |
Rehwinkel J, Raes J, Izaurralde E. Nonsense-mediated mRNA decay: Target genes and functional diversification of effectors. Trends in Biochemical Sciences. 31: 639-46. PMID 17010613 DOI: 10.1016/J.Tibs.2006.09.005 |
0.323 |
|
| 2006 |
Baele G, Raes J, Van de Peer Y, Vansteelandt S. An improved statistical method for detecting heterotachy in nucleotide sequences. Molecular Biology and Evolution. 23: 1397-405. PMID 16672284 DOI: 10.1093/Molbev/Msl006 |
0.578 |
|
| 2006 |
Casneuf T, De Bodt S, Raes J, Maere S, Van de Peer Y. Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana. Genome Biology. 7: R13. PMID 16507168 DOI: 10.1186/Gb-2006-7-2-R13 |
0.602 |
|
| 2005 |
Rehwinkel J, Letunic I, Raes J, Bork P, Izaurralde E. Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets. Rna (New York, N.Y.). 11: 1530-44. PMID 16199763 DOI: 10.1261/Rna.2160905 |
0.715 |
|
| 2005 |
Beysen D, Raes J, Leroy BP, Lucassen A, Yates JR, Clayton-Smith J, Ilyina H, Brooks SS, Christin-Maitre S, Fellous M, Fryns JP, Kim JR, Lapunzina P, Lemyre E, Meire F, et al. Deletions involving long-range conserved nongenic sequences upstream and downstream of FOXL2 as a novel disease-causing mechanism in blepharophimosis syndrome. American Journal of Human Genetics. 77: 205-18. PMID 15962237 DOI: 10.1086/432083 |
0.61 |
|
| 2005 |
Raes J, Van de Peer Y. Functional divergence of proteins through frameshift mutations. Trends in Genetics : Tig. 21: 428-31. PMID 15951050 DOI: 10.1016/J.Tig.2005.05.013 |
0.58 |
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| 2005 |
Maere S, De Bodt S, Raes J, Casneuf T, Van Montagu M, Kuiper M, Van de Peer Y. Modeling gene and genome duplications in eukaryotes. Proceedings of the National Academy of Sciences of the United States of America. 102: 5454-9. PMID 15800040 DOI: 10.1073/Pnas.0501102102 |
0.618 |
|
| 2005 |
Aubourg S, Brunaud V, Bruyère C, Cock M, Cooke R, Cottet A, Couloux A, Déhais P, Deléage G, Duclert A, Echeverria M, Eschbach A, Falconet D, Filippi G, Gaspin C, ... ... Raes J, et al. GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts. Nucleic Acids Research. 33: D641-6. PMID 15608279 DOI: 10.1093/Nar/Gki115 |
0.309 |
|
| 2004 |
Taylor JS, Raes J. Duplication and divergence: the evolution of new genes and old ideas. Annual Review of Genetics. 38: 615-43. PMID 15568988 DOI: 10.1146/Annurev.Genet.38.072902.092831 |
0.318 |
|
| 2003 |
Raes J, Van de Peer Y. Gene duplication, the evolution of novel gene functions, and detecting functional divergence of duplicates in silico. Applied Bioinformatics. 2: 91-101. PMID 15130825 |
0.566 |
|
| 2003 |
Raes J, Rohde A, Christensen JH, Van de Peer Y, Boerjan W. Genome-wide characterization of the lignification toolbox in Arabidopsis. Plant Physiology. 133: 1051-71. PMID 14612585 DOI: 10.1104/Pp.103.026484 |
0.623 |
|
| 2003 |
De Bodt S, Raes J, Van de Peer Y, Theissen G. And then there were many: MADS goes genomic. Trends in Plant Science. 8: 475-83. PMID 14557044 DOI: 10.1016/J.Tplants.2003.09.006 |
0.613 |
|
| 2003 |
Raes J, Vandepoele K, Simillion C, Saeys Y, Van de Peer Y. Investigating ancient duplication events in the Arabidopsis genome. Journal of Structural and Functional Genomics. 3: 117-29. PMID 12836691 DOI: 10.1007/978-94-010-0263-9_12 |
0.709 |
|
| 2003 |
De Bodt S, Raes J, Florquin K, Rombauts S, Rouzé P, Theissen G, Van de Peer Y. Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants. Journal of Molecular Evolution. 56: 573-86. PMID 12698294 DOI: 10.1007/S00239-002-2426-X |
0.593 |
|
| 2002 |
Vandepoele K, Saeys Y, Simillion C, Raes J, Van De Peer Y. The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice. Genome Research. 12: 1792-801. PMID 12421767 DOI: 10.1101/Gr.400202 |
0.714 |
|
| 2002 |
Breyne P, Dreesen R, Vandepoele K, De Veylder L, Van Breusegem F, Callewaert L, Rombauts S, Raes J, Cannoot B, Engler G, Inzé D, Zabeau M. Transcriptome analysis during cell division in plants. Proceedings of the National Academy of Sciences of the United States of America. 99: 14825-30. PMID 12393816 DOI: 10.1073/Pnas.222561199 |
0.551 |
|
| 2002 |
Vandepoele K, Raes J, De Veylder L, Rouzé P, Rombauts S, Inzé D. Genome-wide analysis of core cell cycle genes in Arabidopsis. The Plant Cell. 14: 903-16. PMID 11971144 DOI: 10.1105/Tpc.010445 |
0.577 |
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