Chongyuan Luo, Ph.D. - Publications

Affiliations: 
2006-2012 Plant Biology Rutgers University, New Brunswick, United States 
 2012-2019 Genomic Analysis Laboratory Salk Institute for Biological Studies, La Jolla, CA, United States 
 2019- Human Genetics University of California Los Angeles School of Medicine 
Area:
Epigenomics, Neuroscience
Website:
https://luogenomics.github.io/

23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Lee DS, Luo C, Zhou J, Chandran S, Rivkin A, Bartlett A, Nery JR, Fitzpatrick C, O'Connor C, Dixon JR, Ecker JR. Simultaneous profiling of 3D genome structure and DNA methylation in single human cells. Nature Methods. PMID 31501549 DOI: 10.1038/s41592-019-0547-z  1
2019 Luo C, Lee QY, Wapinski O, Castanon R, Nery JR, Mall M, Kareta MS, Cullen SM, Goodell MA, Chang HY, Wernig M, Ecker JR. Global DNA methylation remodeling during direct reprogramming of fibroblasts to neurons. Elife. 8. PMID 30644360 DOI: 10.7554/eLife.40197  1
2018 Luo C, Hajkova P, Ecker JR. Dynamic DNA methylation: In the right place at the right time. Science (New York, N.Y.). 361: 1336-1340. PMID 30262495 DOI: 10.1126/science.aat6806  1
2018 Luo C, Rivkin A, Zhou J, Sandoval JP, Kurihara L, Lucero J, Castanon R, Nery JR, Pinto-Duarte A, Bui B, Fitzpatrick C, O'Connor C, Ruga S, Van Eden ME, Davis DA, et al. Robust single-cell DNA methylome profiling with snmC-seq2. Nature Communications. 9: 3824. PMID 30237449 DOI: 10.1038/s41467-018-06355-2  1
2018 Sabbagh MF, Heng JS, Luo C, Castanon RG, Nery JR, Rattner A, Goff LA, Ecker JR, Nathans J. Transcriptional and epigenomic landscapes of CNS and non-CNS vascular endothelial cells. Elife. 7. PMID 30188322 DOI: 10.7554/eLife.36187  1
2017 Luo C, Keown CL, Kurihara L, Zhou J, He Y, Li J, Castanon R, Lucero J, Nery JR, Sandoval JP, Bui B, Sejnowski TJ, Harkins TT, Mukamel EA, Behrens MM, et al. Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex. Science (New York, N.Y.). 357: 600-604. PMID 28798132 DOI: 10.1126/science.aan3351  1
2016 Luo C, Lancaster MA, Castanon R, Nery JR, Knoblich JA, Ecker JR. Cerebral Organoids Recapitulate Epigenomic Signatures of the Human Fetal Brain. Cell Reports. 17: 3369-3384. PMID 28009303 DOI: 10.1016/j.celrep.2016.12.001  1
2016 Chin CS, Peluso P, Sedlazeck FJ, Nattestad M, Concepcion GT, Clum A, Dunn C, O'Malley R, Figueroa-Balderas R, Morales-Cruz A, Cramer GR, Delledonne M, Luo C, Ecker JR, Cantu D, et al. Phased diploid genome assembly with single-molecule real-time sequencing. Nature Methods. PMID 27749838 DOI: 10.1038/nmeth.4035  1
2016 Mo A, Luo C, Davis FP, Mukamel EA, Henry GL, Nery JR, Urich MA, Picard S, Lister R, Eddy SR, Beer MA, Ecker JR, Nathans J. Epigenomic landscapes of retinal rods and cones. Elife. 5. PMID 26949250 DOI: 10.7554/eLife.11613  1
2015 Mo A, Mukamel EA, Davis FP, Luo C, Henry GL, Picard S, Urich MA, Nery JR, Sejnowski TJ, Lister R, Eddy SR, Ecker JR, Nathans J. Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain. Neuron. 86: 1369-84. PMID 26087164 DOI: 10.1016/j.neuron.2015.05.018  1
2015 Luo C, Ecker JR. Exceptional epigenetics in the brain Science. 348: 1094-1095. PMID 26045424 DOI: 10.1126/science.aac5832  1
2015 Wu J, Okamura D, Li M, Suzuki K, Luo C, Ma L, He Y, Li Z, Benner C, Tamura I, Krause MN, Nery JR, Du T, Zhang Z, Hishida T, et al. An alternative pluripotent state confers interspecies chimaeric competency. Nature. 521: 316-21. PMID 25945737 DOI: 10.1038/nature14413  1
2014 Luo C, Dong J, Zhang Y, Lam E. Decoding the role of chromatin architecture in development: coming closer to the end of the tunnel. Frontiers in Plant Science. 5: 374. PMID 25191327 DOI: 10.3389/fpls.2014.00374  1
2014 Widiez T, Symeonidi A, Luo C, Lam E, Lawton M, Rensing SA. The chromatin landscape of the moss Physcomitrella patens and its dynamics during development and drought stress. The Plant Journal : For Cell and Molecular Biology. 79: 67-81. PMID 24779858 DOI: 10.1111/tpj.12542  1
2014 Luo C, Lam E. Quantitatively profiling genome-wide patterns of histone modifications in Arabidopsis thaliana using ChIP-seq. Methods in Molecular Biology (Clifton, N.J.). 1112: 177-93. PMID 24478015 DOI: 10.1007/978-1-62703-773-0_12  1
2013 Luo C, Sidote DJ, Zhang Y, Kerstetter RA, Michael TP, Lam E. Integrative analysis of chromatin states in Arabidopsis identified potential regulatory mechanisms for natural antisense transcript production. The Plant Journal : For Cell and Molecular Biology. 73: 77-90. PMID 22962860 DOI: 10.1111/tpj.12017  1
2012 Vaquero-Sedas MI, Luo C, Vega-Palas MA. Analysis of the epigenetic status of telomeres by using ChIP-seq data. Nucleic Acids Research. 40: e163. PMID 22855559 DOI: 10.1093/nar/gks730  0.01
2011 Amini A, Luo C, Lam E. Chromatin beacons: global sampling of chromatin physical properties using chromatin charting lines. Methods in Molecular Biology (Clifton, N.J.). 701: 301-14. PMID 21181538 DOI: 10.1007/978-1-61737-957-4_17  1
2010 Luo C, Lam E. ANCORP: a high-resolution approach that generates distinct chromatin state models from multiple genome-wide datasets. The Plant Journal : For Cell and Molecular Biology. 63: 339-51. PMID 20444227 DOI: 10.1111/j.1365-313X.2010.04236.x  1
2009 Luo C, Durgin BG, Watanabe N, Lam E. Defining the functional network of epigenetic regulators in Arabidopsis thaliana. Molecular Plant. 2: 661-74. PMID 19825647 DOI: 10.1093/mp/ssp017  1
2009 Luo C, Lam E. Chromatin charting: global mapping of epigenetic effects. Methods in Molecular Biology (Clifton, N.J.). 553: 127-39. PMID 19588104 DOI: 10.1007/978-1-60327-563-7_7  1
2009 Lam E, Luo C, Watanabe N. Charting functional and physical properties of chromatin in living cells. Current Opinion in Genetics & Development. 19: 135-41. PMID 19327981 DOI: 10.1016/j.gde.2009.02.004  1
2007 Rotter D, Bharti AK, Li HM, Luo C, Bonos SA, Bughrara S, Jung G, Messing J, Meyer WA, Rudd S, Warnke SE, Belanger FC. Analysis of EST sequences suggests recent origin of allotetraploid colonial and creeping bentgrasses. Molecular Genetics and Genomics : Mgg. 278: 197-209. PMID 17497174 DOI: 10.1007/s00438-007-0240-2  1
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