| Year |
Citation |
Score |
| 2024 |
Heffel MG, Zhou J, Zhang Y, Lee DS, Hou K, Pastor-Alonso O, Abuhanna KD, Galasso J, Kern C, Tai CY, Garcia-Padilla C, Nafisi M, Zhou Y, Schmitt AD, Li T, ... ... Ecker JR, et al. Temporally distinct 3D multi-omic dynamics in the developing human brain. Nature. PMID 39385032 DOI: 10.1038/s41586-024-08030-7 |
0.743 |
|
| 2024 |
Denyer T, Wu PJ, Colt K, Abramson B, Pang Z, Solansky P, Mamerto A, Nobori T, Ecker J, Lam E, Michael TP, Timmermans MC. Streamlined spatial and environmental expression signatures characterize the minimalist duckweed . Genome Research. PMID 38951025 DOI: 10.1101/gr.279091.124 |
0.777 |
|
| 2024 |
Tian W, Ding W, Shen J, Li D, Wang T, Ecker JR. BAllC and BAllCools: Efficient formatting and operating for Single-Cell DNA methylation data. Bioinformatics (Oxford, England). PMID 38905499 DOI: 10.1093/bioinformatics/btae404 |
0.799 |
|
| 2024 |
Gonzalez S, Swift J, Yaaran A, Xu J, Miller C, Illouz-Eliaz N, Nery JR, Busch W, Zait Y, Ecker JR. transcriptome responses to low water potential using high-throughput plate assays. Elife. 12. PMID 38904663 DOI: 10.7554/eLife.84747 |
0.771 |
|
| 2024 |
Chien JF, Liu H, Wang BA, Luo C, Bartlett A, Castanon R, Johnson ND, Nery JR, Osteen J, Li J, Altshul J, Kenworthy M, Valadon C, Liem M, Claffey N, ... ... Ecker JR, et al. Cell-type-specific effects of age and sex on human cortical neurons. Neuron. PMID 38838671 DOI: 10.1016/j.neuron.2024.05.013 |
0.802 |
|
| 2024 |
Zhang S, Shu H, Zhou J, Rubin-Sigler J, Yang X, Liu Y, Cooper-Knock J, Monte E, Zhu C, Tu S, Li H, Tong M, Ecker J, Ichida J, Shen Y, et al. Deconvolution of polygenic risk score in single cells unravels cellular and molecular heterogeneity of complex human diseases. Biorxiv : the Preprint Server For Biology. PMID 38798507 DOI: 10.1101/2024.05.14.594252 |
0.729 |
|
| 2024 |
Zhou J, Luo C, Liu H, Heffel MG, Straub RE, Kleinman JE, Hyde TM, Ecker JR, Weinberger DR, Han S. scMeFormer: a transformer-based deep learning model for imputing DNA methylation states in single cells enhances the detection of epigenetic alterations in schizophrenia. Biorxiv : the Preprint Server For Biology. PMID 38328094 DOI: 10.1101/2024.01.25.577200 |
0.754 |
|
| 2024 |
Zemke NR, Armand EJ, Wang W, Lee S, Zhou J, Li YE, Liu H, Tian W, Nery JR, Castanon RG, Bartlett A, Osteen JK, Li D, Zhuo X, Xu V, ... ... Ecker JR, et al. Author Correction: Conserved and divergent gene regulatory programs of the mammalian neocortex. Nature. PMID 38200319 DOI: 10.1038/s41586-023-07013-4 |
0.781 |
|
| 2024 |
Cao M, Platre MP, Tsai HH, Zhang L, Nobori T, Armengot L, Chen Y, He W, Brent L, Coll NS, Ecker JR, Geldner N, Busch W. Spatial IMA1 regulation restricts root iron acquisition on MAMP perception. Nature. PMID 38200311 DOI: 10.1038/s41586-023-06891-y |
0.658 |
|
| 2023 |
Mukamel EA, Liu H, Behrens MM, Ecker JR. Cell type-specific enrichment of somatic aneuploidy in the mammalian brain. Biorxiv : the Preprint Server For Biology. PMID 38187559 DOI: 10.1101/2023.12.18.572285 |
0.548 |
|
| 2023 |
Zhou J, Zhang Z, Wu M, Liu H, Pang Y, Bartlett A, Peng Z, Ding W, Rivkin A, Lagos WN, Williams E, Lee CT, Miyazaki PA, Aldridge A, Zeng Q, ... ... Ecker JR, et al. Brain-wide correspondence of neuronal epigenomics and distant projections. Nature. 624: 355-365. PMID 38092919 DOI: 10.1038/s41586-023-06823-w |
0.785 |
|
| 2023 |
Zemke NR, Armand EJ, Wang W, Lee S, Zhou J, Li YE, Liu H, Tian W, Nery JR, Castanon RG, Bartlett A, Osteen JK, Li D, Zhuo X, Xu V, ... ... Ecker JR, et al. Conserved and divergent gene regulatory programs of the mammalian neocortex. Nature. 624: 390-402. PMID 38092918 DOI: 10.1038/s41586-023-06819-6 |
0.814 |
|
| 2023 |
Zu S, Li YE, Wang K, Armand EJ, Mamde S, Amaral ML, Wang Y, Chu A, Xie Y, Miller M, Xu J, Wang Z, Zhang K, Jia B, Hou X, ... ... Ecker JR, et al. Single-cell analysis of chromatin accessibility in the adult mouse brain. Nature. 624: 378-389. PMID 38092917 DOI: 10.1038/s41586-023-06824-9 |
0.808 |
|
| 2023 |
Liu H, Zeng Q, Zhou J, Bartlett A, Wang BA, Berube P, Tian W, Kenworthy M, Altshul J, Nery JR, Chen H, Castanon RG, Zu S, Li YE, Lucero J, ... ... Ecker JR, et al. Single-cell DNA methylome and 3D multi-omic atlas of the adult mouse brain. Nature. 624: 366-377. PMID 38092913 DOI: 10.1038/s41586-023-06805-y |
0.816 |
|
| 2023 |
Raikhel N, Ecker JR, Coruzzi G. Remembering Philip N. Benfey: A visionary pioneer in plant biology and mentor extraordinaire. Proceedings of the National Academy of Sciences of the United States of America. 120: e2317677120. PMID 37903253 DOI: 10.1073/pnas.2317677120 |
0.51 |
|
| 2023 |
Tian W, Zhou J, Bartlett A, Zeng Q, Liu H, Castanon RG, Kenworthy M, Altshul J, Valadon C, Aldridge A, Nery JR, Chen H, Xu J, Johnson ND, Lucero J, ... ... Ecker JR, et al. Single-cell DNA methylation and 3D genome architecture in the human brain. Science (New York, N.Y.). 382: eadf5357. PMID 37824674 DOI: 10.1126/science.adf5357 |
0.816 |
|
| 2023 |
Li YE, Preissl S, Miller M, Johnson ND, Wang Z, Jiao H, Zhu C, Wang Z, Xie Y, Poirion O, Kern C, Pinto-Duarte A, Tian W, Siletti K, Emerson N, ... ... Ecker JR, et al. A comparative atlas of single-cell chromatin accessibility in the human brain. Science (New York, N.Y.). 382: eadf7044. PMID 37824643 DOI: 10.1126/science.adf7044 |
0.754 |
|
| 2023 |
Tian W, Ding W, Ecker JR. BAllC and BAllCools: Efficient Formatting and Operating for Single-Cell DNA Methylation Data. Biorxiv : the Preprint Server For Biology. PMID 37808734 DOI: 10.1101/2023.09.22.559047 |
0.799 |
|
| 2023 |
Nobori T, Ecker JR. Yet uninfected? Resolving cell states of plants under pathogen attack. Cell Reports Methods. 3: 100538. PMID 37533641 DOI: 10.1016/j.crmeth.2023.100538 |
0.704 |
|
| 2023 |
Xie F, Armand EJ, Yao Z, Liu H, Bartlett A, Behrens MM, Li YE, Lucero JD, Luo C, Nery JR, Pinto-Duarte A, Poirion OB, Preissl S, Rivkin AC, Tasic B, ... ... Ecker JR, et al. Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes. Cell Genomics. 3: 100342. PMID 37492103 DOI: 10.1016/j.xgen.2023.100342 |
0.817 |
|
| 2023 |
Wang W, Hariharan M, Bartlett A, Barragan C, Castanon R, Rothenberg V, Song H, Nery J, Aldridge A, Altshul J, Kenworthy M, Ding W, Liu H, Tian W, Zhou J, ... ... Ecker JR, et al. Human Immune Cell Epigenomic Signatures in Response to Infectious Diseases and Chemical Exposures. Biorxiv : the Preprint Server For Biology. PMID 37425926 DOI: 10.1101/2023.06.29.546792 |
0.796 |
|
| 2023 |
Hawrylycz M, Martone ME, Ascoli GA, Bjaalie JG, Dong HW, Ghosh SS, Gillis J, Hertzano R, Haynor DR, Hof PR, Kim Y, Lein E, Liu Y, Miller JA, Mitra PP, ... ... Ecker JR, et al. A guide to the BRAIN Initiative Cell Census Network data ecosystem. Plos Biology. 21: e3002133. PMID 37390046 DOI: 10.1371/journal.pbio.3002133 |
0.516 |
|
| 2023 |
Nobori T, Oliva M, Lister R, Ecker JR. Multiplexed single-cell 3D spatial gene expression analysis in plant tissue using PHYTOMap. Nature Plants. PMID 37308583 DOI: 10.1038/s41477-023-01439-4 |
0.792 |
|
| 2023 |
Liu H, Zeng Q, Zhou J, Bartlett A, Wang BA, Berube P, Tian W, Kenworthy M, Altshul J, Nery JR, Chen H, Castanon RG, Zu S, Li YE, Lucero J, ... ... Ecker JR, et al. Single-cell DNA Methylome and 3D Multi-omic Atlas of the Adult Mouse Brain. Biorxiv : the Preprint Server For Biology. PMID 37131654 DOI: 10.1101/2023.04.16.536509 |
0.816 |
|
| 2023 |
Zemke NR, Armand EJ, Wang W, Lee S, Zhou J, Li YE, Liu H, Tian W, Nery JR, Castanon RG, Bartlett A, Osteen JK, Li D, Zhuo X, Xu V, ... ... Ecker JR, et al. Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate neocortex. Biorxiv : the Preprint Server For Biology. PMID 37066152 DOI: 10.1101/2023.04.08.536119 |
0.822 |
|
| 2023 |
Yin L, Zander M, Huang SC, Xie M, Song L, Guzm N JPS, Hann E, Shanbhag BK, Ng S, Jain S, Janssen BJ, Clark NM, Walley JW, Beddoe T, Bar-Joseph Z, ... ... Ecker JR, et al. Transcription Factor Dynamics in Cross-Regulation of Plant Hormone Signaling Pathways. Biorxiv : the Preprint Server For Biology. PMID 36945593 DOI: 10.1101/2023.03.07.531630 |
0.811 |
|
| 2023 |
Willige BC, Zander M, Yoo CY, Phan A, Garza RM, Wanamaker SA, He Y, Nery JR, Chen H, Chen M, Ecker JR, Chory J. Author Correction: PHYTOCHROME-INTERACTING FACTORs trigger environmentally responsive chromatin dynamics in plants. Nature Genetics. PMID 36690790 DOI: 10.1038/s41588-023-01299-w |
0.794 |
|
| 2023 |
Wanamaker SA, Garza RM, MacWilliams A, Nery JR, Bartlett A, Castanon R, Goubil A, Feeney J, O'Malley R, Huang SC, Zhang ZZ, Galli M, Ecker JR. Author Correction: CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Nature Methods. PMID 36690743 DOI: 10.1038/s41592-023-01768-4 |
0.761 |
|
| 2022 |
Procko C, Lee T, Borsuk A, Bargmann BOR, Dabi T, Nery JR, Estelle M, Baird L, O'Connor C, Brodersen C, Ecker JR, Chory J. Leaf cell-specific and single-cell transcriptional profiling reveals a role for the palisade layer in UV light protection. The Plant Cell. PMID 35666176 DOI: 10.1093/plcell/koac167 |
0.802 |
|
| 2022 |
Li J, Pinto-Duarte A, Zander M, Cuoco MS, Lai CY, Osteen J, Fang L, Luo C, Lucero JD, Gomez-Castanon R, Nery JR, Silva-Garcia I, Pang Y, Sejnowski TJ, Powell SB, ... Ecker JR, et al. knockout in excitatory neurons impairs postnatal synapse maturation and increases the repressive histone modification H3K27me3. Elife. 11. PMID 35604009 DOI: 10.7554/eLife.66909 |
0.811 |
|
| 2022 |
Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, Shen Y, ... ... Ecker JR, et al. Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature. PMID 35474001 DOI: 10.1038/s41586-021-04226-3 |
0.638 |
|
| 2022 |
Luo C, Liu H, Xie F, Armand EJ, Siletti K, Bakken TE, Fang R, Doyle WI, Stuart T, Hodge RD, Hu L, Wang BA, Zhang Z, Preissl S, Lee DS, ... ... Ecker JR, et al. Single nucleus multi-omics identifies human cortical cell regulatory genome diversity. Cell Genomics. 2. PMID 35419551 DOI: 10.1016/j.xgen.2022.100107 |
0.797 |
|
| 2022 |
Bakken TE, Jorstad NL, Hu Q, Lake BB, Tian W, Kalmbach BE, Crow M, Hodge RD, Krienen FM, Sorensen SA, Eggermont J, Yao Z, Aevermann BD, Aldridge AI, Bartlett A, ... ... Ecker JR, et al. Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse. Nature. PMID 35319013 DOI: 10.1038/s41586-022-04562-y |
0.761 |
|
| 2022 |
Potok ME, Zhong Z, Picard CL, Liu Q, Do T, Jacobsen CE, Sakr O, Naranbaatar B, Thilakaratne R, Khnkoyan Z, Purl M, Cheng H, Vervaet H, Feng S, Rayatpisheh S, ... ... Ecker JR, et al. The role of ATXR6 expression in modulating genome stability and transposable element repression in . Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35027454 DOI: 10.1073/pnas.2115570119 |
0.69 |
|
| 2021 |
Swift J, Greenham K, Ecker JR, Coruzzi GM, McClung CR. The biology of time: dynamic responses of cell types to developmental, circadian, and environmental cues. The Plant Journal : For Cell and Molecular Biology. PMID 34797944 DOI: 10.1111/tpj.15589 |
0.779 |
|
| 2021 |
Gouveia-Mageste BC, Martins LGC, Dal-Bianco M, Machado JPB, da Silva JCF, Kim AY, Yazaki J, Dos Santos AA, Ecker JR, Fontes EPB. A plant-specific syntaxin-6 protein contributes to the intracytoplasmic route for the begomovirus CabLCV. Plant Physiology. 187: 158-173. PMID 34618135 DOI: 10.1093/plphys/kiab252 |
0.679 |
|
| 2021 |
Li YE, Preissl S, Hou X, Zhang Z, Zhang K, Qiu Y, Poirion OB, Li B, Chiou J, Liu H, Pinto-Duarte A, Kubo N, Yang X, Fang R, Wang X, ... ... Ecker JR, et al. An atlas of gene regulatory elements in adult mouse cerebrum. Nature. 598: 129-136. PMID 34616068 DOI: 10.1038/s41586-021-03604-1 |
0.802 |
|
| 2021 |
Yao Z, Liu H, Xie F, Fischer S, Adkins RS, Aldridge AI, Ament SA, Bartlett A, Behrens MM, Van den Berge K, Bertagnolli D, de Bézieux HR, Biancalani T, Booeshaghi AS, Bravo HC, ... ... Ecker JR, et al. A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex. Nature. 598: 103-110. PMID 34616066 DOI: 10.1038/s41586-021-03500-8 |
0.799 |
|
| 2021 |
Zhang Z, Zhou J, Tan P, Pang Y, Rivkin AC, Kirchgessner MA, Williams E, Lee CT, Liu H, Franklin AD, Miyazaki PA, Bartlett A, Aldridge AI, Vu M, Boggeman L, ... ... Ecker JR, et al. Epigenomic diversity of cortical projection neurons in the mouse brain. Nature. 598: 167-173. PMID 34616065 DOI: 10.1038/s41586-021-03223-w |
0.773 |
|
| 2021 |
Bakken TE, Jorstad NL, Hu Q, Lake BB, Tian W, Kalmbach BE, Crow M, Hodge RD, Krienen FM, Sorensen SA, Eggermont J, Yao Z, Aevermann BD, Aldridge AI, Bartlett A, ... ... Ecker JR, et al. Comparative cellular analysis of motor cortex in human, marmoset and mouse. Nature. 598: 111-119. PMID 34616062 DOI: 10.1038/s41586-021-03465-8 |
0.809 |
|
| 2021 |
Liu H, Zhou J, Tian W, Luo C, Bartlett A, Aldridge A, Lucero J, Osteen JK, Nery JR, Chen H, Rivkin A, Castanon RG, Clock B, Li YE, Hou X, ... ... Ecker JR, et al. DNA methylation atlas of the mouse brain at single-cell resolution. Nature. 598: 120-128. PMID 34616061 DOI: 10.1038/s41586-020-03182-8 |
0.825 |
|
| 2021 |
Farhy-Tselnicker I, Boisvert MM, Liu H, Dowling C, Erikson GA, Blanco-Suarez E, Farhy C, Shokhirev MN, Ecker JR, Allen NJ. Activity-dependent modulation of synapse-regulating genes in astrocytes. Elife. 10. PMID 34494546 DOI: 10.7554/eLife.70514 |
0.529 |
|
| 2021 |
Willige BC, Zander M, Yoo CY, Phan A, Garza RM, Trigg SA, He Y, Nery JR, Chen H, Chen M, Ecker JR, Chory J. PHYTOCHROME-INTERACTING FACTORs trigger environmentally responsive chromatin dynamics in plants. Nature Genetics. PMID 34140685 DOI: 10.1038/s41588-021-00882-3 |
0.814 |
|
| 2021 |
Ruf-Zamojski F, Zhang Z, Zamojski M, Smith GR, Mendelev N, Liu H, Nudelman G, Moriwaki M, Pincas H, Castanon RG, Nair VD, Seenarine N, Amper MAS, Zhou X, Ongaro L, ... ... Ecker JR, et al. Single nucleus multi-omics regulatory landscape of the murine pituitary. Nature Communications. 12: 2677. PMID 33976139 DOI: 10.1038/s41467-021-22859-w |
0.598 |
|
| 2021 |
Gao C, Liu J, Kriebel AR, Preissl S, Luo C, Castanon R, Sandoval J, Rivkin A, Nery JR, Behrens MM, Ecker JR, Ren B, Welch JD. Iterative single-cell multi-omic integration using online learning. Nature Biotechnology. PMID 33875866 DOI: 10.1038/s41587-021-00867-x |
0.664 |
|
| 2021 |
de Mendoza A, Poppe D, Buckberry S, Pflueger J, Albertin CB, Daish T, Bertrand S, de la Calle-Mustienes E, Gómez-Skarmeta JL, Nery JR, Ecker JR, Baer B, Ragsdale CW, Grützner F, Escriva H, et al. The emergence of the brain non-CpG methylation system in vertebrates. Nature Ecology & Evolution. PMID 33462491 DOI: 10.1038/s41559-020-01371-2 |
0.81 |
|
| 2021 |
Gorkin DU, Barozzi I, Zhao Y, Zhang Y, Huang H, Lee AY, Li B, Chiou J, Wildberg A, Ding B, Zhang B, Wang M, Strattan JS, Davidson JM, Qiu Y, ... ... Ecker JR, et al. Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development. Nature. PMID 33398137 DOI: 10.1038/s41586-020-03089-4 |
0.536 |
|
| 2020 |
Michael TP, Ernst E, Hartwick N, Chu P, Bryant D, Gilbert S, Ortleb S, Baggs EL, Sree KS, Appenroth KJ, Fuchs J, Jupe F, Sandoval JP, Krasileva KV, Borisjuk L, ... ... Ecker J, et al. Genome and time-of-day transcriptome of link morphological minimization with gene loss and less growth control. Genome Research. PMID 33361111 DOI: 10.1101/gr.266429.120 |
0.803 |
|
| 2020 |
Gorkin DU, Barozzi I, Zhao Y, Zhang Y, Huang H, Lee AY, Li B, Chiou J, Wildberg A, Ding B, Zhang B, Wang M, Strattan JS, Davidson JM, Qiu Y, ... ... Ecker JR, et al. Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development. Nature. PMID 33037424 DOI: 10.1038/s41586-020-2841-4 |
0.532 |
|
| 2020 |
Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, ... ... Ecker JR, et al. Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature. 583: 699-710. PMID 32728249 DOI: 10.1038/S41586-020-2493-4 |
0.703 |
|
| 2020 |
He Y, Hariharan M, Gorkin DU, Dickel DE, Luo C, Castanon RG, Nery JR, Lee AY, Zhao Y, Huang H, Williams BA, Trout D, Amrhein H, Fang R, Chen H, ... ... Ecker JR, et al. Spatiotemporal DNA methylome dynamics of the developing mouse fetus. Nature. 583: 752-759. PMID 32728242 DOI: 10.1038/S41586-020-2119-X |
0.824 |
|
| 2020 |
Gorkin DU, Barozzi I, Zhao Y, Zhang Y, Huang H, Lee AY, Li B, Chiou J, Wildberg A, Ding B, Zhang B, Wang M, Strattan JS, Davidson JM, Qiu Y, ... ... Ecker JR, et al. An atlas of dynamic chromatin landscapes in mouse fetal development. Nature. 583: 744-751. PMID 32728240 DOI: 10.1038/S41586-020-2093-3 |
0.653 |
|
| 2020 |
Zander M, Lewsey MG, Clark NM, Yin L, Bartlett A, Saldierna Guzmán JP, Hann E, Langford AE, Jow B, Wise A, Nery JR, Chen H, Bar-Joseph Z, Walley JW, Solano R, ... Ecker JR, et al. Publisher Correction: Integrated multi-omics framework of the plant response to jasmonic acid. Nature Plants. PMID 32694625 DOI: 10.1038/S41477-020-0743-Y |
0.775 |
|
| 2020 |
Paniza T, Deshpande M, Wang N, O'Neil R, Zuccaro MV, Smith ME, Madireddy A, James D, Ecker J, Rosenwaks Z, Egli D, Gerhardt J. Pluripotent stem cells with low differentiation potential contain incompletely reprogrammed DNA replication. The Journal of Cell Biology. 219. PMID 32673399 DOI: 10.1083/Jcb.201909163 |
0.377 |
|
| 2020 |
Wierbowski SD, Vo TV, Falter-Braun P, Jobe TO, Kruse LH, Wei X, Liang J, Meyer MJ, Akturk N, Rivera-Erick CA, Cordero NA, Paramo MI, Shayhidin EE, Bertolotti M, Tippens ND, ... ... Ecker JR, et al. A massively parallel barcoded sequencing pipeline enables generation of the first ORFeome and interactome map for rice. Proceedings of the National Academy of Sciences of the United States of America. PMID 32398372 DOI: 10.1073/Pnas.1918068117 |
0.322 |
|
| 2020 |
Kim EJ, Zhang Z, Huang L, Ito-Cole T, Jacobs MW, Juavinett AL, Senturk G, Hu M, Ku M, Ecker JR, Callaway EM. Extraction of Distinct Neuronal Cell Types from within a Genetically Continuous Population. Neuron. PMID 32396852 DOI: 10.1016/J.Neuron.2020.04.018 |
0.693 |
|
| 2020 |
Zander M, Lewsey MG, Clark NM, Yin L, Bartlett A, Saldierna Guzmán JP, Hann E, Langford AE, Jow B, Wise A, Nery JR, Chen H, Bar-Joseph Z, Walley JW, Solano R, ... Ecker JR, et al. Integrated multi-omics framework of the plant response to jasmonic acid. Nature Plants. 6: 290-302. PMID 32170290 DOI: 10.1038/S41477-020-0605-7 |
0.82 |
|
| 2020 |
Lavery LA, Ure K, Wan YW, Luo C, Trostle AJ, Wang W, Jin H, Lopez J, Lucero J, Durham MA, Castanon R, Nery JR, Liu Z, Goodell M, Ecker JR, et al. Losing Dnmt3a dependent methylation in inhibitory neurons impairs neural function by a mechanism impacting Rett syndrome. Elife. 9. PMID 32159514 DOI: 10.7554/Elife.52981 |
0.711 |
|
| 2020 |
Burko Y, Seluzicki A, Zander M, Pedmale U, Ecker JR, Chory J. Chimeric Activators and Repressors Define HY5 Activity and Reveal a Light-Regulated Feedback Mechanism. The Plant Cell. PMID 32086365 DOI: 10.1105/Tpc.19.00772 |
0.768 |
|
| 2020 |
Lavery LA, Ure K, Wan Y, Luo C, Trostle AJ, Wang W, Jin H, Lopez J, Lucero J, Durham MA, Castanon R, Nery JR, Liu Z, Goodell M, Ecker JR, et al. Author response: Losing Dnmt3a dependent methylation in inhibitory neurons impairs neural function by a mechanism impacting Rett syndrome Elife. DOI: 10.7554/Elife.52981.Sa2 |
0.669 |
|
| 2020 |
Ruf-Zamojski FM, Zamojski MA, Nudelman G, Ge Y, Mendelev N, Smith GR, Zhou X, Toufaily C, Schang G, Gambino LO, Liu H, Gomez Castanon RG, Moriwaki M, Nair V, Pincas H, ... ... Ecker JR, et al. SAT-298 Integrative Single-Cell Transcriptomic and Epigenomic Landscape of Mouse Anterior Pituitary Cell Types Journal of the Endocrine Society. 4. DOI: 10.1210/Jendso/Bvaa046.593 |
0.633 |
|
| 2020 |
Behrens M, Lai C, Pinto-Duarte A, Li J, Luo C, Powell S, Ecker J, Mukamel E. Using the Power of Single-Nucleus Epigenomics to Map the Molecular Complexity of the Adult Brain Biological Psychiatry. 87: S61-S62. DOI: 10.1016/J.Biopsych.2020.02.179 |
0.769 |
|
| 2019 |
Sasaki E, Kawakatsu T, Ecker JR, Nordborg M. Common alleles of CMT2 and NRPE1 are major determinants of CHH methylation variation in Arabidopsis thaliana. Plos Genetics. 15: e1008492. PMID 31887137 DOI: 10.1371/Journal.Pgen.1008492 |
0.678 |
|
| 2019 |
Ortigosa A, Fonseca S, Franco-Zorrilla JM, Fernandez-Calvo P, Zander M, Lewsey MG, García-Casado G, Fernández-Barbero G, Ecker JR, Solano R. The JA-pathway MYC transcription factors regulate photomorphogenic responses by targeting HY5 gene expression. The Plant Journal : For Cell and Molecular Biology. PMID 31755159 DOI: 10.1111/Tpj.14618 |
0.808 |
|
| 2019 |
Van Moerkercke A, Duncan O, Zander M, Šimura J, Broda M, Vanden Bossche R, Lewsey MG, Lama S, Singh KB, Ljung K, Ecker JR, Goossens A, Millar AH, Van Aken O. A MYC2/MYC3/MYC4-dependent transcription factor network regulates water spray-responsive gene expression and jasmonate levels. Proceedings of the National Academy of Sciences of the United States of America. PMID 31662474 DOI: 10.1073/Pnas.1911758116 |
0.815 |
|
| 2019 |
Brigidi GS, Hayes MGB, Delos Santos NP, Hartzell AL, Texari L, Lin PA, Bartlett A, Ecker JR, Benner C, Heinz S, Bloodgood BL. Genomic Decoding of Neuronal Depolarization by Stimulus-Specific NPAS4 Heterodimers. Cell. 179: 373-391.e27. PMID 31585079 DOI: 10.1016/J.Cell.2019.09.004 |
0.345 |
|
| 2019 |
Lee DS, Luo C, Zhou J, Chandran S, Rivkin A, Bartlett A, Nery JR, Fitzpatrick C, O'Connor C, Dixon JR, Ecker JR. Simultaneous profiling of 3D genome structure and DNA methylation in single human cells. Nature Methods. PMID 31501549 DOI: 10.1038/S41592-019-0547-Z |
0.828 |
|
| 2019 |
Salehin M, Li B, Tang M, Katz E, Song L, Ecker JR, Kliebenstein DJ, Estelle M. Auxin-sensitive Aux/IAA proteins mediate drought tolerance in Arabidopsis by regulating glucosinolate levels. Nature Communications. 10: 4021. PMID 31492889 DOI: 10.1038/S41467-019-12002-1 |
0.541 |
|
| 2019 |
Kawakatsu T, Ecker JR. Diversity and dynamics of DNA methylation: epigenomic resources and tools for crop breeding. Breeding Science. 69: 191-204. PMID 31481828 DOI: 10.1270/Jsbbs.19005 |
0.689 |
|
| 2019 |
Zander M, Willige BC, He Y, Nguyen TA, Langford AE, Nehring R, Howell E, McGrath R, Bartlett A, Castanon R, Nery JR, Chen H, Zhang Z, Jupe F, Stepanova A, ... ... Ecker JR, et al. Epigenetic silencing of a multifunctional plant stress regulator. Elife. 8. PMID 31418686 DOI: 10.7554/Elife.47835 |
0.805 |
|
| 2019 |
Zhou J, Ma J, Chen Y, Cheng C, Bao B, Peng J, Sejnowski TJ, Dixon JR, Ecker JR. Robust single-cell Hi-C clustering by convolution- and random-walk-based imputation. Proceedings of the National Academy of Sciences of the United States of America. PMID 31235599 DOI: 10.1073/Pnas.1901423116 |
0.723 |
|
| 2019 |
Jupe F, Rivkin AC, Michael TP, Zander M, Motley ST, Sandoval JP, Slotkin RK, Chen H, Castanon R, Nery JR, Ecker JR. The complex architecture and epigenomic impact of plant T-DNA insertions. Plos Genetics. 15: e1007819. PMID 30657772 DOI: 10.1371/Journal.Pgen.1007819 |
0.814 |
|
| 2019 |
Luo C, Lee QY, Wapinski O, Castanon R, Nery JR, Mall M, Kareta MS, Cullen SM, Goodell MA, Chang HY, Wernig M, Ecker JR. Global DNA methylation remodeling during direct reprogramming of fibroblasts to neurons. Elife. 8. PMID 30644360 DOI: 10.7554/Elife.40197 |
0.715 |
|
| 2019 |
Zander M, Willige BC, He Y, Nguyen TA, Langford AE, Nehring R, Howell E, McGrath R, Bartlett A, Castanon R, Nery JR, Chen H, Zhang Z, Jupe F, Stepanova A, ... ... Ecker JR, et al. Author response: Epigenetic silencing of a multifunctional plant stress regulator Elife. DOI: 10.7554/Elife.47835.027 |
0.788 |
|
| 2018 |
Hrit J, Goodrich L, Li C, Wang BA, Nie J, Cui X, Martin EA, Simental E, Fernandez J, Liu MY, Nery JR, Castanon R, Kohli RM, Tretyakova N, He C, ... Ecker JR, et al. OGT binds a conserved C-terminal domain of TET1 to regulate TET1 activity and function in development. Elife. 7. PMID 30325306 DOI: 10.7554/Elife.34870 |
0.793 |
|
| 2018 |
Luo C, Hajkova P, Ecker JR. Dynamic DNA methylation: In the right place at the right time. Science (New York, N.Y.). 361: 1336-1340. PMID 30262495 DOI: 10.1126/Science.Aat6806 |
0.738 |
|
| 2018 |
Luo C, Rivkin A, Zhou J, Sandoval JP, Kurihara L, Lucero J, Castanon R, Nery JR, Pinto-Duarte A, Bui B, Fitzpatrick C, O'Connor C, Ruga S, Van Eden ME, Davis DA, ... ... Ecker JR, et al. Robust single-cell DNA methylome profiling with snmC-seq2. Nature Communications. 9: 3824. PMID 30237449 DOI: 10.1038/S41467-018-06355-2 |
0.801 |
|
| 2018 |
Sabbagh MF, Heng JS, Luo C, Castanon RG, Nery JR, Rattner A, Goff LA, Ecker JR, Nathans J. Transcriptional and epigenomic landscapes of CNS and non-CNS vascular endothelial cells. Elife. 7. PMID 30188322 DOI: 10.7554/Elife.36187 |
0.705 |
|
| 2018 |
Yazaki J, Galli M, Kim AY, Ecker JR. Profiling Interactome Networks with the HaloTag-NAPPA In Situ Protein Array. Current Protocols in Plant Biology. e20071. PMID 30106517 DOI: 10.1002/cppb.20071 |
0.776 |
|
| 2018 |
Michael TP, Jupe F, Bemm F, Motley ST, Sandoval JP, Lanz C, Loudet O, Weigel D, Ecker JR. High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell. Nature Communications. 9: 541. PMID 29416032 DOI: 10.1038/S41467-018-03016-2 |
0.757 |
|
| 2018 |
Luo C, Lee QY, Wapinski O, Castanon R, Nery JR, Mall M, Kareta MS, Cullen SM, Goodell MA, Chang HY, Wernig M, Ecker JR. Author response: Global DNA methylation remodeling during direct reprogramming of fibroblasts to neurons Elife. DOI: 10.7554/Elife.40197.020 |
0.699 |
|
| 2018 |
Sabbagh MF, Heng JS, Luo C, Castanon RG, Nery JR, Rattner A, Goff LA, Ecker JR, Nathans J. Author response: Transcriptional and epigenomic landscapes of CNS and non-CNS vascular endothelial cells Elife. DOI: 10.7554/Elife.36187.042 |
0.664 |
|
| 2017 |
Carter AC, Chang HY, Church G, Dombkowski A, Ecker JR, Gil E, Giresi PG, Greely H, Greenleaf WJ, Hacohen N, He C, Hill D, Ko J, Kohane I, Kundaje A, et al. Challenges and recommendations for epigenomics in precision health. Nature Biotechnology. 35: 1128-1132. PMID 29220033 DOI: 10.1038/Nbt.4030 |
0.355 |
|
| 2017 |
Huang SC, Ecker JR. Piecing together cis-regulatory networks: insights from epigenomics studies in plants. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. PMID 29194997 DOI: 10.1002/Wsbm.1411 |
0.705 |
|
| 2017 |
Ecker JR, Geschwind DH, Kriegstein AR, Ngai J, Osten P, Polioudakis D, Regev A, Sestan N, Wickersham IR, Zeng H. The BRAIN Initiative Cell Census Consortium: Lessons Learned toward Generating a Comprehensive Brain Cell Atlas. Neuron. 96: 542-557. PMID 29096072 DOI: 10.1016/J.Neuron.2017.10.007 |
0.304 |
|
| 2017 |
Kawakatsu T, Nery JR, Castanon R, Ecker JR. Dynamic DNA methylation reconfiguration during seed development and germination. Genome Biology. 18: 171. PMID 28911331 DOI: 10.1186/S13059-017-1251-X |
0.683 |
|
| 2017 |
Luo C, Keown CL, Kurihara L, Zhou J, He Y, Li J, Castanon R, Lucero J, Nery JR, Sandoval JP, Bui B, Sejnowski TJ, Harkins TT, Mukamel EA, Behrens MM, ... Ecker JR, et al. Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex. Science (New York, N.Y.). 357: 600-604. PMID 28798132 DOI: 10.1126/Science.Aan3351 |
0.8 |
|
| 2017 |
Bartlett A, O'Malley RC, Huang SC, Galli M, Nery JR, Gallavotti A, Ecker JR. Mapping genome-wide transcription-factor binding sites using DAP-seq. Nature Protocols. 12: 1659-1672. PMID 28726847 DOI: 10.1038/Nprot.2017.055 |
0.812 |
|
| 2017 |
Trigg SA, Garza RM, MacWilliams A, Nery JR, Bartlett A, Castanon R, Goubil A, Feeney J, O'Malley R, Huang SC, Zhang ZZ, Galli M, Ecker JR. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Nature Methods. PMID 28650476 DOI: 10.1038/Nmeth.4343 |
0.793 |
|
| 2017 |
Hsia MM, O'Malley R, Cartwright A, Nieu R, Gordon SP, Kelly S, Williams TG, Wood DF, Zhao Y, Bragg J, Jordan M, Pauly M, Ecker JR, Gu Y, Vogel JP. Sequencing and functional validation of the JGI Brachypodium distachyon T-DNA collection. The Plant Journal : For Cell and Molecular Biology. PMID 28432803 DOI: 10.1111/Tpj.13582 |
0.693 |
|
| 2017 |
Keown CL, Berletch JB, Castanon R, Nery JR, Disteche CM, Ecker JR, Mukamel EA. Allele-specific non-CG DNA methylation marks domains of active chromatin in female mouse brain. Proceedings of the National Academy of Sciences of the United States of America. PMID 28320934 DOI: 10.1073/Pnas.1611905114 |
0.405 |
|
| 2017 |
He Y, Gorkin DU, Dickel DE, Nery JR, Castanon RG, Lee AY, Shen Y, Visel A, Pennacchio LA, Ren B, Ecker JR. Improved regulatory element prediction based on tissue-specific local epigenomic signatures. Proceedings of the National Academy of Sciences of the United States of America. PMID 28193886 DOI: 10.1073/Pnas.1618353114 |
0.653 |
|
| 2017 |
Shani E, Salehin M, Zhang Y, Sanchez SE, Doherty C, Wang R, Mangado CC, Song L, Tal I, Pisanty O, Ecker JR, Kay SA, Pruneda-Paz J, Estelle M. Plant Stress Tolerance Requires Auxin-Sensitive Aux/IAA Transcriptional Repressors. Current Biology : Cb. PMID 28111153 DOI: 10.1016/J.Cub.2016.12.016 |
0.573 |
|
| 2017 |
Hossain MS, Kawakatsu T, Kim KD, Ning Z, Nguyen CT, Khan SM, Batek JM, Joshi T, Schmutz J, Grimwood J, Schmitz RJ, Xu D, Jackson SA, Ecker JR, Stacey G. Divergent cytosine DNA methylation patterns in single-cell, soybean root hairs. The New Phytologist. PMID 28106918 DOI: 10.1111/Nph.14421 |
0.809 |
|
| 2017 |
Trigg S, Garza R, MacWilliams A, Nery JR, Bartlett A, Castanon R, Goubil A, Feeney J, O'Malley R, Huang SC, Zhang Z, Galli M, Ecker JR. CrY2H-seq interactome screening Protocol Exchange. DOI: 10.1038/Protex.2017.058 |
0.748 |
|
| 2016 |
Song L, Koga Y, Ecker JR. Profiling of transcription factor binding events by chromatin immunoprecipitation sequencing (ChIP-seq). Current Protocols in Plant Biology. 1: 293-306. PMID 28782043 DOI: 10.1002/cppb.20014 |
0.538 |
|
| 2016 |
Luo C, Lancaster MA, Castanon R, Nery JR, Knoblich JA, Ecker JR. Cerebral Organoids Recapitulate Epigenomic Signatures of the Human Fetal Brain. Cell Reports. 17: 3369-3384. PMID 28009303 DOI: 10.1016/J.Celrep.2016.12.001 |
0.687 |
|
| 2016 |
Gimenez-Ibanez S, Boter M, Ortigosa A, García-Casado G, Chini A, Lewsey MG, Ecker JR, Ntoukakis V, Solano R. JAZ2 controls stomata dynamics during bacterial invasion. The New Phytologist. PMID 28005270 DOI: 10.1111/Nph.14354 |
0.784 |
|
| 2016 |
Narsai R, Secco D, Schultz MD, Ecker JR, Lister R, Whelan J. Dynamic and rapid changes in the transcriptome and epigenome during germination and in developing rice (Oryza sativa) coleoptiles under anoxia and re-oxygenation. The Plant Journal : For Cell and Molecular Biology. PMID 27859855 DOI: 10.1111/Tpj.13418 |
0.643 |
|
| 2016 |
Ma H, O'Neil RC, Marti Gutierrez N, Hariharan M, Zhang ZZ, He Y, Cinnioglu C, Kayali R, Kang E, Lee Y, Hayama T, Koski A, Nery J, Castanon R, Tippner-Hedges R, ... ... Ecker JR, et al. Functional Human Oocytes Generated by Transfer of Polar Body Genomes. Cell Stem Cell. PMID 27840020 DOI: 10.1016/J.Stem.2016.10.001 |
0.79 |
|
| 2016 |
Song L, Huang SC, Wise A, Castanon R, Nery JR, Chen H, Watanabe M, Thomas J, Bar-Joseph Z, Ecker JR. A transcription factor hierarchy defines an environmental stress response network. Science (New York, N.Y.). 354. PMID 27811239 DOI: 10.1126/Science.Aag1550 |
0.713 |
|
| 2016 |
Chin CS, Peluso P, Sedlazeck FJ, Nattestad M, Concepcion GT, Clum A, Dunn C, O'Malley R, Figueroa-Balderas R, Morales-Cruz A, Cramer GR, Delledonne M, Luo C, Ecker JR, Cantu D, et al. Phased diploid genome assembly with single-molecule real-time sequencing. Nature Methods. PMID 27749838 DOI: 10.1038/Nmeth.4035 |
0.77 |
|
| 2016 |
Zhang F, Qi B, Wang L, Zhao B, Rode S, Riggan ND, Ecker JR, Qiao H. EIN2-dependent regulation of acetylation of histone H3K14 and non-canonical histone H3K23 in ethylene signalling. Nature Communications. 7: 13018. PMID 27694846 DOI: 10.1038/Ncomms13018 |
0.802 |
|
| 2016 |
O'Malley RC, Huang SC, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell. 166: 1598. PMID 27610578 DOI: 10.1016/J.Cell.2016.08.063 |
0.783 |
|
| 2016 |
Walley JW, Sartor RC, Shen Z, Schmitz RJ, Wu KJ, Urich MA, Nery JR, Smith LG, Schnable JC, Ecker JR, Briggs SP. Integration of omic networks in a developmental atlas of maize. Science (New York, N.Y.). 353: 814-8. PMID 27540173 DOI: 10.1126/Science.Aag1125 |
0.688 |
|
| 2016 |
Theunissen TW, Friedli M, He Y, Planet E, O'Neil RC, Markoulaki S, Pontis J, Wang H, Iouranova A, Imbeault M, Duc J, Cohen MA, Wert KJ, Castanon R, Zhang Z, ... ... Ecker JR, et al. Molecular Criteria for Defining the Naive Human Pluripotent State. Cell Stem Cell. PMID 27424783 DOI: 10.1016/J.Stem.2016.06.011 |
0.772 |
|
| 2016 |
Kawakatsu T, Huang SC, Jupe F, Sasaki E, Schmitz RJ, Urich MA, Castanon R, Nery JR, Barragan C, He Y, Chen H, Dubin M, Lee CR, Wang C, Bemm F, ... ... Ecker JR, et al. Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions. Cell. 166: 492-505. PMID 27419873 DOI: 10.1016/J.Cell.2016.06.044 |
0.826 |
|
| 2016 |
Aleman F, Yazaki J, Lee M, Takahashi Y, Kim AY, Li Z, Kinoshita T, Ecker JR, Schroeder JI. An ABA-increased interaction of the PYL6 ABA receptor with MYC2 Transcription Factor: A putative link of ABA and JA signaling. Scientific Reports. 6: 28941. PMID 27357749 DOI: 10.1038/Srep28941 |
0.713 |
|
| 2016 |
Yazaki J, Galli M, Kim AY, Nito K, Aleman F, Chang KN, Carvunis AR, Quan R, Nguyen H, Song L, Alvarez JM, Huang SC, Chen H, Ramachandran N, Altmann S, ... ... Ecker JR, et al. Mapping transcription factor interactome networks using HaloTag protein arrays. Proceedings of the National Academy of Sciences of the United States of America. PMID 27357687 DOI: 10.1073/Pnas.1603229113 |
0.801 |
|
| 2016 |
Kawakatsu T, Stuart T, Valdes M, Breakfield N, Schmitz RJ, Nery JR, Urich MA, Han X, Lister R, Benfey PN, Ecker JR. Unique cell-type-specific patterns of DNA methylation in the root meristem. Nature Plants. 2: 16058. PMID 27243651 DOI: 10.1038/Nplants.2016.58 |
0.832 |
|
| 2016 |
O'Malley RC, Huang SC, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell. 165: 1280-1292. PMID 27203113 DOI: 10.1016/J.Cell.2016.04.038 |
0.811 |
|
| 2016 |
Prigge M, Greenham K, Zhang Y, Santner A, Castillejo C, Mutka AM, O'Malley RC, Ecker JR, Kunkel BN, Estelle M. The Arabidopsis Auxin Receptor F-box proteins AFB4 and AFB5 are Required for Response to the Synthetic Auxin Picloram. G3 (Bethesda, Md.). PMID 26976444 DOI: 10.1534/G3.115.025585 |
0.666 |
|
| 2016 |
Mo A, Luo C, Davis FP, Mukamel EA, Henry GL, Nery JR, Urich MA, Picard S, Lister R, Eddy SR, Beer MA, Ecker JR, Nathans J. Epigenomic landscapes of retinal rods and cones. Elife. 5. PMID 26949250 DOI: 10.7554/Elife.11613 |
0.794 |
|
| 2016 |
Bogdanović O, Smits AH, de la Calle Mustienes E, Tena JJ, Ford E, Williams R, Senanayake U, Schultz MD, Hontelez S, van Kruijsbergen I, Rayon T, Gnerlich F, Carell T, Veenstra GJ, Manzanares M, ... ... Ecker JR, et al. Active DNA demethylation at enhancers during the vertebrate phylotypic period. Nature Genetics. PMID 26928226 DOI: 10.1038/Ng.3522 |
0.794 |
|
| 2016 |
Lewsey MG, Hardcastle TJ, Melnyk CW, Molnar A, Valli A, Urich MA, Nery JR, Baulcombe DC, Ecker JR. Mobile small RNAs regulate genome-wide DNA methylation. Proceedings of the National Academy of Sciences of the United States of America. PMID 26787884 DOI: 10.1073/Pnas.1515072113 |
0.828 |
|
| 2016 |
Sanchez-Mut JV, Heyn H, Vidal E, Moran S, Sayols S, Delgado-Morales R, Schultz MD, Ansoleaga B, Garcia-Esparcia P, Pons-Espinal M, de Lagran MM, Dopazo J, Rabano A, Avila J, Dierssen M, ... ... Ecker JR, et al. Human DNA methylomes of neurodegenerative diseases show common epigenomic patterns. Translational Psychiatry. 6: e718. PMID 26784972 DOI: 10.1038/Tp.2015.214 |
0.343 |
|
| 2015 |
Pedmale UV, Huang SC, Zander M, Cole BJ, Hetzel J, Ljung K, Reis PA, Sridevi P, Nito K, Nery JR, Ecker JR, Chory J. Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light. Cell. PMID 26724867 DOI: 10.1016/J.Cell.2015.12.018 |
0.796 |
|
| 2015 |
Schultz MD, He Y, Whitaker JW, Hariharan M, Mukamel EA, Leung D, Rajagopal N, Nery JR, Urich MA, Chen H, Lin S, Lin Y, Jung I, Schmitt AD, Selvaraj S, ... ... Ecker JR, et al. Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation. Nature. PMID 26605523 DOI: 10.1038/Nature16179 |
0.796 |
|
| 2015 |
Kishore K, de Pretis S, Lister R, Morelli MJ, Bianchi V, Amati B, Ecker JR, Pelizzola M. methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data. Bmc Bioinformatics. 16: 313. PMID 26415965 DOI: 10.1186/S12859-015-0742-6 |
0.791 |
|
| 2015 |
Dinh TT, Gao L, Liu X, Li D, Li S, Zhao Y, O'Leary M, Le B, Schmitz RJ, Manavella PA, Li S, Weigel D, Pontes O, Ecker JR, Chen X. Correction: DNA Topoisomerase 1α Promotes Transcriptional Silencing of Transposable Elements through DNA Methylation and Histone Lysine 9 Dimethylation in Arabidopsis. Plos Genetics. 11: e1005452. PMID 26379054 DOI: 10.1371/journal.pgen.1005452 |
0.705 |
|
| 2015 |
Nagel DH, Doherty CJ, Pruneda-Paz JL, Schmitz RJ, Ecker JR, Kay SA. Genome-wide identification of CCA1 targets uncovers an expanded clock network in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 112: E4802-10. PMID 26261339 DOI: 10.1073/Pnas.1513609112 |
0.73 |
|
| 2015 |
Secco D, Wang C, Shou H, Schultz MD, Chiarenza S, Nussaume L, Ecker JR, Whelan J, Lister R. Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements. Elife. 4. PMID 26196146 DOI: 10.7554/Elife.09343 |
0.675 |
|
| 2015 |
Mo A, Mukamel EA, Davis FP, Luo C, Henry GL, Picard S, Urich MA, Nery JR, Sejnowski TJ, Lister R, Eddy SR, Ecker JR, Nathans J. Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain. Neuron. 86: 1369-84. PMID 26087164 DOI: 10.1016/J.Neuron.2015.05.018 |
0.788 |
|
| 2015 |
He Y, Ecker JR. Non-CG Methylation in the Human Genome. Annual Review of Genomics and Human Genetics. 16: 55-77. PMID 26077819 DOI: 10.1146/Annurev-Genom-090413-025437 |
0.672 |
|
| 2015 |
Luo C, Ecker JR. Exceptional epigenetics in the brain Science. 348: 1094-1095. PMID 26045424 DOI: 10.1126/Science.Aac5832 |
0.726 |
|
| 2015 |
Schultz MD, He Y, Whitaker JW, Hariharan M, Mukamel EA, Leung D, Rajagopal N, Nery JR, Urich MA, Chen H, Lin S, Lin Y, Jung I, Schmitt AD, Selvaraj S, ... ... Ecker JR, et al. Human body epigenome maps reveal noncanonical DNA methylation variation. Nature. 523: 212-6. PMID 26030523 DOI: 10.1038/Nature14465 |
0.81 |
|
| 2015 |
Wu J, Okamura D, Li M, Suzuki K, Luo C, Ma L, He Y, Li Z, Benner C, Tamura I, Krause MN, Nery JR, Du T, Zhang Z, Hishida T, ... ... Ecker JR, et al. An alternative pluripotent state confers interspecies chimaeric competency. Nature. 521: 316-21. PMID 25945737 DOI: 10.1038/Nature14413 |
0.782 |
|
| 2015 |
O'Malley RC, Barragan CC, Ecker JR. A user's guide to the Arabidopsis T-DNA insertion mutant collections. Methods in Molecular Biology (Clifton, N.J.). 1284: 323-42. PMID 25757780 DOI: 10.1007/978-1-4939-2444-8_16 |
0.682 |
|
| 2015 |
Leung D, Jung I, Rajagopal N, Schmitt A, Selvaraj S, Lee AY, Yen CA, Lin S, Lin Y, Qiu Y, Xie W, Yue F, Hariharan M, Ray P, Kuan S, ... ... Ecker JR, et al. Integrative analysis of haplotype-resolved epigenomes across human tissues. Nature. 518: 350-4. PMID 25693566 DOI: 10.1038/Nature14217 |
0.742 |
|
| 2015 |
Dixon JR, Jung I, Selvaraj S, Shen Y, Antosiewicz-Bourget JE, Lee AY, Ye Z, Kim A, Rajagopal N, Xie W, Diao Y, Liang J, Zhao H, Lobanenkov VV, Ecker JR, et al. Chromatin architecture reorganization during stem cell differentiation. Nature. 518: 331-6. PMID 25693564 DOI: 10.1038/Nature14222 |
0.419 |
|
| 2015 |
Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, ... ... Ecker JR, et al. Integrative analysis of 111 reference human epigenomes. Nature. 518: 317-30. PMID 25693563 DOI: 10.1038/Nature14248 |
0.654 |
|
| 2015 |
Urich MA, Nery JR, Lister R, Schmitz RJ, Ecker JR. MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing. Nature Protocols. 10: 475-83. PMID 25692984 DOI: 10.1038/Nprot.2014.114 |
0.804 |
|
| 2015 |
Mo A, Luo C, Davis FP, Mukamel EA, Henry GL, Nery JR, Urich MA, Picard S, Lister R, Eddy SR, Beer MA, Ecker JR, Nathans J. Author response: Epigenomic landscapes of retinal rods and cones Elife. DOI: 10.7554/Elife.11613.056 |
0.727 |
|
| 2015 |
Secco D, Wang C, Shou H, Schultz MD, Chiarenza S, Nussaume L, Ecker JR, Whelan J, Lister R. Author response: Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements Elife. DOI: 10.7554/Elife.09343.035 |
0.647 |
|
| 2015 |
Urich MA, Nery JR, Lister R, Schmitz RJ, Ecker JR. MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing Nature Protocols. 10: 475-483. DOI: 10.1038/nprot.2014.114 |
0.551 |
|
| 2014 |
Lin S, Lin Y, Nery JR, Urich MA, Breschi A, Davis CA, Dobin A, Zaleski C, Beer MA, Chapman WC, Gingeras TR, Ecker JR, Snyder MP. Comparison of the transcriptional landscapes between human and mouse tissues. Proceedings of the National Academy of Sciences of the United States of America. 111: 17224-9. PMID 25413365 DOI: 10.1073/Pnas.1413624111 |
0.474 |
|
| 2014 |
Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, ... ... Ecker JR, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 158: 1431-43. PMID 25215497 DOI: 10.1016/J.Cell.2014.08.009 |
0.812 |
|
| 2014 |
Buganim Y, Markoulaki S, van Wietmarschen N, Hoke H, Wu T, Ganz K, Akhtar-Zaidi B, He Y, Abraham BJ, Porubsky D, Kulenkampff E, Faddah DA, Shi L, Gao Q, Sarkar S, ... ... Ecker JR, et al. The developmental potential of iPSCs is greatly influenced by reprogramming factor selection. Cell Stem Cell. 15: 295-309. PMID 25192464 DOI: 10.1016/J.Stem.2014.07.003 |
0.668 |
|
| 2014 |
Yu W, McIntosh C, Lister R, Zhu I, Han Y, Ren J, Landsman D, Lee E, Briones V, Terashima M, Leighty R, Ecker JR, Muegge K. Genome-wide DNA methylation patterns in LSH mutant reveals de-repression of repeat elements and redundant epigenetic silencing pathways. Genome Research. 24: 1613-23. PMID 25170028 DOI: 10.1101/Gr.172015.114 |
0.687 |
|
| 2014 |
Catalá R, López-Cobollo R, Mar Castellano M, Angosto T, Alonso JM, Ecker JR, Salinas J. The Arabidopsis 14-3-3 protein RARE COLD INDUCIBLE 1A links low-temperature response and ethylene biosynthesis to regulate freezing tolerance and cold acclimation. The Plant Cell. 26: 3326-42. PMID 25122152 DOI: 10.1105/Tpc.114.127605 |
0.516 |
|
| 2014 |
Pruneda-Paz JL, Breton G, Nagel DH, Kang SE, Bonaldi K, Doherty CJ, Ravelo S, Galli M, Ecker JR, Kay SA. A genome-scale resource for the functional characterization of Arabidopsis transcription factors. Cell Reports. 8: 622-32. PMID 25043187 DOI: 10.1016/J.Celrep.2014.06.033 |
0.748 |
|
| 2014 |
Ma H, Morey R, O'Neil RC, He Y, Daughtry B, Schultz MD, Hariharan M, Nery JR, Castanon R, Sabatini K, Thiagarajan RD, Tachibana M, Kang E, Tippner-Hedges R, Ahmed R, ... ... Ecker JR, et al. Abnormalities in human pluripotent cells due to reprogramming mechanisms. Nature. 511: 177-83. PMID 25008523 DOI: 10.1038/Nature13551 |
0.794 |
|
| 2014 |
Dinh TT, Gao L, Liu X, Li D, Li S, Zhao Y, O'Leary M, Le B, Schmitz RJ, Manavella P, Weigel D, Pontes O, Ecker JR, Chen X. DNA Topoisomerase 1α Promotes Transcriptional Silencing of Transposable Elements through DNA Methylation and Histone Lysine 9 Dimethylation in Arabidopsis Plos Genetics. 10. PMID 24992598 DOI: 10.1371/Journal.Pgen.1004446 |
0.741 |
|
| 2014 |
Yu W, Briones V, Lister R, McIntosh C, Han Y, Lee EY, Ren J, Terashima M, Leighty RM, Ecker JR, Muegge K. CG hypomethylation in Lsh-/- mouse embryonic fibroblasts is associated with de novo H3K4me1 formation and altered cellular plasticity. Proceedings of the National Academy of Sciences of the United States of America. 111: 5890-5. PMID 24711395 DOI: 10.1073/Pnas.1320945111 |
0.677 |
|
| 2014 |
Looney TJ, Zhang L, Chen CH, Lee JH, Chari S, Mao FF, Pelizzola M, Zhang L, Lister R, Baker SW, Fernandes CJ, Gaetz J, Foshay KM, Clift KL, Zhang Z, ... ... Ecker JR, et al. Systematic mapping of occluded genes by cell fusion reveals prevalence and stability of cis-mediated silencing in somatic cells. Genome Research. 24: 267-80. PMID 24310002 DOI: 10.1101/Gr.143891.112 |
0.791 |
|
| 2014 |
Lister R, Pelizzola M, Kida YS, Hawkins RD, Nery JR, Hon G, Antosiewicz-Bourget J, O'Malley R, Castanon R, Klugman S, Downes M, Yu R, Stewart R, Ren B, Thomson JA, ... ... Ecker JR, et al. Corrigendum: Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells Nature. 514: 126. DOI: 10.1038/Nature13843 |
0.726 |
|
| 2014 |
Valdés-López O, Khan SM, Schmitz RJ, Cui S, Qiu J, Joshi T, Xu D, Diers B, Ecker JR, Stacey G. Genotypic variation of gene expression during the soybean innate immunity response Plant Genetic Resources: Characterisation and Utilisation. 12: S27-S30. DOI: 10.1017/S1479262114000197 |
0.596 |
|
| 2013 |
Hua Z, Pool JE, Schmitz RJ, Schultz MD, Shiu SH, Ecker JR, Vierstra RD. Epigenomic programming contributes to the genomic drift evolution of the F-Box protein superfamily in Arabidopsis Proceedings of the National Academy of Sciences of the United States of America. 110: 16927-16932. PMID 24082131 DOI: 10.1073/Pnas.1316009110 |
0.757 |
|
| 2013 |
Wang T, Liu J, Shen L, Tonti-Filippini J, Zhu Y, Jia H, Lister R, Whitaker JW, Ecker JR, Millar AH, Ren B, Wang W. STAR: an integrated solution to management and visualization of sequencing data. Bioinformatics (Oxford, England). 29: 3204-3210. PMID 24078702 DOI: 10.1093/Bioinformatics/Btt558 |
0.555 |
|
| 2013 |
Schweizer F, Fernández-Calvo P, Zander M, Diez-Diaz M, Fonseca S, Glauser G, Lewsey MG, Ecker JR, Solano R, Reymond P. Arabidopsis basic helix-loop-helix transcription factors MYC2,MYC3, andMYC4 regulate glucosinolate biosynthesis, insect performance, and feeding behavior Plant Cell. 25: 3117-3132. PMID 23943862 DOI: 10.1105/Tpc.113.115139 |
0.813 |
|
| 2013 |
Lister R, Mukamel EA, Nery JR, Urich M, Puddifoot CA, Johnson ND, Lucero J, Huang Y, Dwork AJ, Schultz MD, Yu M, Tonti-Filippini J, Heyn H, Hu S, Wu JC, ... ... Ecker JR, et al. Global epigenomic reconfiguration during mammalian brain development. Science (New York, N.Y.). 341: 1237905. PMID 23828890 DOI: 10.1126/Science.1237905 |
0.662 |
|
| 2013 |
Chang KN, Zhong S, Weirauch MT, Hon G, Pelizzola M, Li H, Huang SS, Schmitz RJ, Urich MA, Kuo D, Nery JR, Qiao H, Yang A, Jamali A, Chen H, ... ... Ecker JR, et al. Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis. Elife. 2: e00675. PMID 23795294 DOI: 10.7554/Elife.00675 |
0.81 |
|
| 2013 |
Schmitz RJ, He Y, Valdés-López O, Khan SM, Joshi T, Urich MA, Nery JR, Diers B, Xu D, Stacey G, Ecker JR. Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population. Genome Research. 23: 1663-74. PMID 23739894 DOI: 10.1101/Gr.152538.112 |
0.79 |
|
| 2013 |
Qiao H, Shen Z, Huang SS, Schmitz RJ, Urich MA, Briggs SP, Ecker JR. Response to perspective: "separation anxiety: an analysis of ethylene-induced cleavage of EIN2". Plant Signaling & Behavior. 8. PMID 23733051 DOI: 10.4161/Psb.25037 |
0.732 |
|
| 2013 |
Xie W, Schultz MD, Lister R, Hou Z, Rajagopal N, Ray P, Whitaker JW, Tian S, Hawkins RD, Leung D, Yang H, Wang T, Lee AY, Swanson SA, Zhang J, ... ... Ecker JR, et al. Epigenomic analysis of multilineage differentiation of human embryonic stem cells. Cell. 153: 1134-48. PMID 23664764 DOI: 10.1016/J.Cell.2013.04.022 |
0.668 |
|
| 2013 |
Hill K, Mathews DE, Kim HJ, Street IH, Wildes SL, Chiang YH, Mason MG, Alonso JM, Ecker JR, Kieber JJ, Schaller GE. Functional characterization of type-B response regulators in the Arabidopsis cytokinin response. Plant Physiology. 162: 212-24. PMID 23482873 DOI: 10.1104/Pp.112.208736 |
0.683 |
|
| 2013 |
Schmitz RJ, Schultz MD, Urich MA, Nery JR, Pelizzola M, Libiger O, Alix A, McCosh RB, Chen H, Schork NJ, Ecker JR. Patterns of population epigenomic diversity. Nature. 495: 193-8. PMID 23467092 DOI: 10.1038/Nature11968 |
0.814 |
|
| 2013 |
Ecker JR. Epigenetic trigger for tomato ripening Nature Biotechnology. 31: 119-120. PMID 23392509 DOI: 10.1038/Nbt.2497 |
0.338 |
|
| 2013 |
Woodson JD, Perez-Ruiz JM, Schmitz RJ, Ecker JR, Chory J. Sigma factor-mediated plastid retrograde signals control nuclear gene expression. The Plant Journal : For Cell and Molecular Biology. 73: 1-13. PMID 22950756 DOI: 10.1111/Tpj.12011 |
0.766 |
|
| 2013 |
Chang KN, Zhong S, Weirauch MT, Hon G, Pelizzola M, Li H, Huang SC, Schmitz RJ, Urich MA, Kuo D, Nery JR, Qiao H, Yang A, Jamali A, Chen H, ... ... Ecker JR, et al. Author response: Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis Elife. DOI: 10.7554/Elife.00675.022 |
0.786 |
|
| 2013 |
Chung W, Schmitz RJ, Biorac T, Ye D, Dudas M, Meredith GD, Adams CC, Ecker JR, Zhang MQ. Constructing Hepitypes: Phasing Local Genotype and DNA Methylation Journal of Neuroscience and Neuroengineering. 2: 335-346. DOI: 10.1166/Jnsne.2013.1067 |
0.633 |
|
| 2012 |
O'Malley RC, Ecker JR. Epiallelic variation in Arabidopsis thaliana. Cold Spring Harbor Symposia On Quantitative Biology. 77: 135-45. PMID 23223383 DOI: 10.1101/Sqb.2012.77.014571 |
0.706 |
|
| 2012 |
Vollmers C, Schmitz RJ, Nathanson J, Yeo G, Ecker JR, Panda S. Circadian oscillations of protein-coding and regulatory RNAs in a highly dynamic mammalian liver epigenome Cell Metabolism. 16: 833-845. PMID 23217262 DOI: 10.1016/J.Cmet.2012.11.004 |
0.718 |
|
| 2012 |
Schultz MD, Schmitz RJ, Ecker JR. 'Leveling' the playing field for analyses of single-base resolution DNA methylomes Trends in Genetics. 28: 583-585. PMID 23131467 DOI: 10.1016/J.Tig.2012.10.012 |
0.723 |
|
| 2012 |
Qiao H, Shen Z, Huang SS, Schmitz RJ, Urich MA, Briggs SP, Ecker JR. Processing and subcellular trafficking of ER-tethered EIN2 control response to ethylene gas. Science (New York, N.Y.). 338: 390-3. PMID 22936567 DOI: 10.1126/Science.1225974 |
0.751 |
|
| 2012 |
Wierzbicki AT, Cocklin R, Mayampurath A, Lister R, Jordan Rowley M, Gregory BD, Ecker JR, Tang H, Pikaard CS. Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome Genes and Development. 26: 1825-1836. PMID 22855789 DOI: 10.1101/Gad.197772.112 |
0.742 |
|
| 2012 |
Berger F, Cao X, Chandler V, Dennis L, Martienssen R, Meyers B, Pikaard C, Peacock J, Richards E, Wagner D, Weigel D, Colot V, Deal R, Dean C, Ecker J, et al. Reading the second code: Mapping epigenomes to understand plant growth, development, and adaptation to the environment Plant Cell. 24: 2257-2261. PMID 22751210 DOI: 10.1105/tpc.112.100636 |
0.555 |
|
| 2012 |
Dowen RH, Pelizzola M, Schmitz RJ, Lister R, Dowen JM, Nery JR, Dixon JE, Ecker JR. Widespread dynamic DNA methylation in response to biotic stress. Proceedings of the National Academy of Sciences of the United States of America. 109: E2183-91. PMID 22733782 DOI: 10.1073/Pnas.1209329109 |
0.83 |
|
| 2012 |
Peng Q, Ecker JR. Detection of allele-specific methylation through a generalized heterogeneous epigenome model Bioinformatics. 28: i163-i171. PMID 22689757 DOI: 10.1093/Bioinformatics/Bts231 |
0.53 |
|
| 2012 |
Johnson DBF, Wang C, Xu J, Schultz MD, Schmitz RJ, Ecker JR, Wang L. Release factor one is nonessential in escherichia coli Acs Chemical Biology. 7: 1337-1344. PMID 22662873 DOI: 10.1021/Cb300229Q |
0.667 |
|
| 2012 |
Kurihara Y, Schmitz RJ, Nery JR, Schultz MD, Okubo-Kurihara E, Morosawa T, Tanaka M, Toyoda T, Seki M, Ecker JR. Surveillance of 3' Noncoding Transcripts Requires FIERY1 and XRN3 in Arabidopsis. G3 (Bethesda, Md.). 2: 487-98. PMID 22540040 DOI: 10.1534/G3.111.001362 |
0.79 |
|
| 2012 |
Li L, Ljung K, Breton G, Schmitz RJ, Pruneda-Paz J, Cowing-Zitron C, Cole BJ, Ivans LJ, Pedmale UV, Jung HS, Ecker JR, Kay SA, Chory J. Linking photoreceptor excitation to changes in plant architecture. Genes & Development. 26: 785-90. PMID 22508725 DOI: 10.1101/Gad.187849.112 |
0.761 |
|
| 2012 |
Schmitz RJ, Ecker JR. Epigenetic and epigenomic variation in Arabidopsis thaliana Trends in Plant Science. 17: 149-154. PMID 22342533 DOI: 10.1016/J.Tplants.2012.01.001 |
0.719 |
|
| 2012 |
Hon GC, Hawkins RD, Caballero OL, Lo C, Lister R, Pelizzola M, Valsesia A, Ye Z, Kuan S, Edsall LE, Camargo AA, Stevenson BJ, Ecker JR, Bafna V, Strausberg RL, et al. Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer. Genome Research. 22: 246-58. PMID 22156296 DOI: 10.1101/Gr.125872.111 |
0.778 |
|
| 2011 |
Hotto AM, Schmitz RJ, Fei Z, Ecker JR, Stern DB. Unexpected Diversity of Chloroplast Noncoding RNAs as Revealed by Deep Sequencing of the Arabidopsis Transcriptome. G3 (Bethesda, Md.). 1: 559-70. PMID 22384367 DOI: 10.1534/G3.111.000752 |
0.702 |
|
| 2011 |
Elling U, Taubenschmid J, Wirnsberger G, O'Malley R, Demers SP, Vanhaelen Q, Shukalyuk AI, Schmauss G, Schramek D, Schnuetgen F, Von Melchner H, Ecker JR, Stanford WL, Zuber J, Stark A, et al. Forward and reverse genetics through derivation of haploid mouse embryonic stem cells Cell Stem Cell. 9: 563-574. PMID 22136931 DOI: 10.1016/J.Stem.2011.10.012 |
0.661 |
|
| 2011 |
Johnson DB, Xu J, Shen Z, Takimoto JK, Schultz MD, Schmitz RJ, Xiang Z, Ecker JR, Briggs SP, Wang L. RF1 knockout allows ribosomal incorporation of unnatural amino acids at multiple sites. Nature Chemical Biology. 7: 779-86. PMID 21926996 DOI: 10.1038/Nchembio.657 |
0.668 |
|
| 2011 |
Schmitz RJ, Schultz MD, Lewsey MG, O'Malley RC, Urich MA, Libiger O, Schork NJ, Ecker JR. Transgenerational epigenetic instability is a source of novel methylation variants. Science (New York, N.Y.). 334: 369-73. PMID 21921155 DOI: 10.1126/Science.1212959 |
0.815 |
|
| 2011 |
Mukhtar MS, Carvunis AR, Dreze M, Epple P, Steinbrenner J, Moore J, Tasan M, Galli M, Hao T, Nishimura MT, Pevzner SJ, Donovan SE, Ghamsari L, Santhanam B, Romero V, ... ... Ecker JR, et al. Independently evolved virulence effectors converge onto hubs in a plant immune system network. Science (New York, N.Y.). 333: 596-601. PMID 21798943 DOI: 10.1126/Science.1203659 |
0.695 |
|
| 2011 |
Pastor WA, Pape UJ, Huang Y, Henderson HR, Lister R, Ko M, McLoughlin EM, Brudno Y, Mahapatra S, Kapranov P, Tahiliani M, Daley GQ, Liu XS, Ecker JR, Milos PM, et al. Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells. Nature. 473: 394-7. PMID 21552279 DOI: 10.1038/Nature10102 |
0.684 |
|
| 2011 |
Lister R, Pelizzola M, Kida YS, Hawkins RD, Nery JR, Hon G, Antosiewicz-Bourget J, O'Malley R, Castanon R, Klugman S, Downes M, Yu R, Stewart R, Ren B, Thomson JA, ... ... Ecker JR, et al. Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells. Nature. 471: 68-73. PMID 21289626 DOI: 10.1038/Nature09798 |
0.811 |
|
| 2011 |
Pelizzola M, Ecker JR. The DNA methylome Febs Letters. 585: 1994-2000. PMID 21056564 DOI: 10.1016/J.Febslet.2010.10.061 |
0.718 |
|
| 2010 |
Harris RA, Wang T, Coarfa C, Nagarajan RP, Hong C, Downey SL, Johnson BE, Fouse SD, Delaney A, Zhao Y, Olshen A, Ballinger T, Zhou X, Forsberg KJ, Gu J, ... ... Ecker JR, et al. Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications. Nature Biotechnology. 28: 1097-105. PMID 20852635 DOI: 10.1038/Nbt.1682 |
0.77 |
|
| 2010 |
Boutrot F, Segonzac C, Chang KN, Qiao H, Ecker JR, Zipfel C, Rathjen JP. Direct transcriptional control of the Arabidopsis immune receptor FLS2 by the ethylene-dependent transcription factors EIN3 and EIL1 Proceedings of the National Academy of Sciences of the United States of America. 107: 14502-14507. PMID 20663954 DOI: 10.1073/Pnas.1003347107 |
0.748 |
|
| 2010 |
An F, Zhao Q, Ji Y, Li W, Jiang Z, Yu X, Zhang C, Han Y, He W, Liu Y, Zhang S, Ecker JR, Guo H. Ethylene-induced stabilization of ETHYLENE INSENSITIVE3 and EIN3-LIKE1 is mediated by proteasomal degradation of EIN3 binding F-box 1 and 2 that requires EIN2 in arabidopsis Plant Cell. 22: 2384-2401. PMID 20647342 DOI: 10.1105/Tpc.110.076588 |
0.659 |
|
| 2010 |
Ecker JR. Zeroing in on DNA methylomes with no BS Nature Methods. 7: 435-436. PMID 20508637 DOI: 10.1038/Nmeth0610-435 |
0.337 |
|
| 2010 |
Hawkins RD, Hon GC, Lee LK, Ngo Q, Lister R, Pelizzola M, Edsall LE, Kuan S, Luu Y, Klugman S, Antosiewicz-Bourget J, Ye Z, Espinoza C, Agarwahl S, Shen L, ... ... Ecker JR, et al. Distinct epigenomic landscapes of pluripotent and lineage-committed human cells. Cell Stem Cell. 6: 479-91. PMID 20452322 DOI: 10.1016/J.Stem.2010.03.018 |
0.79 |
|
| 2010 |
O'Malley RC, Ecker JR. Linking genotype to phenotype using the Arabidopsis unimutant collection. The Plant Journal : For Cell and Molecular Biology. 61: 928-40. PMID 20409268 DOI: 10.1111/J.1365-313X.2010.04119.X |
0.703 |
|
| 2010 |
Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, ... ... Ecker JR, et al. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature. 465: 627-31. PMID 20336072 DOI: 10.1038/Nature08800 |
0.689 |
|
| 2010 |
Endres MW, Gregory BD, Gao Z, Foreman AW, Mlotshwa S, Ge X, Pruss GJ, Ecker JR, Bowman LH, Vance V. Two plant viral suppressors of silencing require the ethylene-inducible host transcription factor RAV2 to block RNA silencing Plos Pathogens. 6. PMID 20084269 DOI: 10.1371/Journal.Ppat.1000729 |
0.635 |
|
| 2009 |
Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, Tonti-Filippini J, Nery JR, Lee L, Ye Z, Ngo QM, Edsall L, Antosiewicz-Bourget J, Stewart R, Ruotti V, Millar AH, ... ... Ecker JR, et al. Human DNA methylomes at base resolution show widespread epigenomic differences. Nature. 462: 315-22. PMID 19829295 DOI: 10.1038/Nature08514 |
0.828 |
|
| 2009 |
Tsuchisaka A, Yu G, Jin H, Alonso JM, Ecker JR, Zhang X, Gao S, Theologis A. A combinatorial interplay among the 1-aminocyclopropane-1-carboxylate isoforms regulates ethylene biosynthesis in Arabidopsis thaliana. Genetics. 183: 979-1003. PMID 19752216 DOI: 10.1534/Genetics.109.107102 |
0.546 |
|
| 2009 |
Birney E, Hudson TJ, Green ED, Gunter C, Eddy S, Rogers J, Harris JR, Ehrlich SD, Apweiler R, Austin CP, Berglund L, Bobrow M, Bountra C, Brookes AJ, ... ... Ecker JR, et al. Prepublication data sharing. Nature. 461: 168-70. PMID 19741685 DOI: 10.1038/461168A |
0.57 |
|
| 2009 |
Liljegren SJ, Leslie ME, Darnielle L, Lewis MW, Taylor SM, Luo R, Geldner N, Chory J, Randazzo PA, Yanofsky MF, Ecker JR. Regulation of membrane trafficking and organ separation by the NEVERSHED ARF-GAP protein. Development (Cambridge, England). 136: 1909-18. PMID 19429787 DOI: 10.1242/Dev.033605 |
0.807 |
|
| 2009 |
Dowen RH, Engel JL, Shao F, Ecker JR, Dixon JE. A family of bacterial cysteine protease type III effectors utilizes acylation-dependent and -independent strategies to localize to plasma membranes. The Journal of Biological Chemistry. 284: 15867-79. PMID 19346252 DOI: 10.1074/Jbc.M900519200 |
0.769 |
|
| 2009 |
Lister R, Ecker JR. Finding the fifth base: Genome-wide sequencing of cytosine methylation Genome Research. 19: 959-966. PMID 19273618 DOI: 10.1101/Gr.083451.108 |
0.651 |
|
| 2009 |
Li H, Wai SW, Zhu L, Hong WG, Ecker J, Li N. Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer Proteomics. 9: 1646-1661. PMID 19253305 DOI: 10.1002/Pmic.200800420 |
0.34 |
|
| 2009 |
Hazen SP, Naef F, Quisel T, Gendron JM, Chen H, Ecker JR, Borevitz JO, Kay SA. Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays. Genome Biology. 10: R17. PMID 19210792 DOI: 10.1186/Gb-2009-10-2-R17 |
0.651 |
|
| 2009 |
Qiao H, Chang KN, Yazaki J, Ecker JR. Interplay between ethylene, ETP1/ETP2 F-box proteins, and degradation of EIN2 triggers ethylene responses in Arabidopsis Genes and Development. 23: 512-521. PMID 19196655 DOI: 10.1101/Gad.1765709 |
0.798 |
|
| 2009 |
Lister R, Gregory BD, Ecker JR. Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond Current Opinion in Plant Biology. 12: 107-118. PMID 19157957 DOI: 10.1016/J.Pbi.2008.11.004 |
0.755 |
|
| 2009 |
Cusick ME, Yu H, Smolyar A, Venkatesan K, Carvunis AR, Simonis N, Rual JF, Borick H, Braun P, Dreze M, Vandenhaute J, Galli M, Yazaki J, Hill DE, Ecker JR, et al. Literature-curated protein interaction datasets. Nature Methods. 6: 39-46. PMID 19116613 DOI: 10.1038/Nmeth.1284 |
0.77 |
|
| 2009 |
Cusick ME, Yu H, Smolyar A, Venkatesan K, Carvunis A, Simonis N, Rual J, Borick H, Braun P, Dreze M, Vandenhaute J, Galli M, Yazaki J, Hill DE, Ecker JR, et al. Addendum: Literature-curated protein interaction datasets Nature Methods. 6: 934-935. DOI: 10.1038/Nmeth1209-934 |
0.764 |
|
| 2008 |
Bender J, Benfey P, Bergmann D, Borevitz J, Coruzzi G, Dangl J, Dean C, Ecker J, Estelle M, Glazebrook J, Grant S, Guerinot ML, Gutierrez R, Long J, Nordborg M, et al. 2020 vision for biology: the role of plants in addressing grand challenges in biology. Molecular Plant. 1: 561-3. PMID 19825561 DOI: 10.1093/Mp/Ssn040 |
0.713 |
|
| 2008 |
Gregory BD, O'Malley RC, Lister R, Urich MA, Tonti-Filippini J, Chen H, Millar AH, Ecker JR. A link between RNA metabolism and silencing affecting Arabidopsis development. Developmental Cell. 14: 854-66. PMID 18486559 DOI: 10.1016/J.Devcel.2008.04.005 |
0.785 |
|
| 2008 |
Lister R, O'Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, Millar AH, Ecker JR. Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell. 133: 523-36. PMID 18423832 DOI: 10.1016/J.Cell.2008.03.029 |
0.829 |
|
| 2008 |
Hu J, Mitchum MG, Barnaby N, Ayele BT, Ogawa M, Nam E, Lai WC, Hanada A, Alonso JM, Ecker JR, Swain SM, Yamaguchi S, Kamiya Y, Sun TP. Potential sites of bioactive gibberellin production during reproductive growth in Arabidopsis. The Plant Cell. 20: 320-36. PMID 18310462 DOI: 10.1105/Tpc.107.057752 |
0.496 |
|
| 2008 |
Gregory BD, Yazaki J, Ecker JR. Utilizing tiling microarrays for whole-genome analysis in plants Plant Journal. 53: 636-644. PMID 18269573 DOI: 10.1111/J.1365-313X.2007.03320.X |
0.783 |
|
| 2008 |
Leivar P, Monte E, Al-Sady B, Carle C, Storer A, Alonso JM, Ecker JR, Quail PH. The Arabidopsis phytochrome-interacting factor PIF7, together with PIF3 and PIF4, regulates responses to prolonged red light by modulating phyB levels. The Plant Cell. 20: 337-52. PMID 18252845 DOI: 10.1105/Tpc.107.052142 |
0.464 |
|
| 2008 |
Ecker JR, Lister R, O'Malley RC, Tonti-Filippini J, Berry CC, Millar AH. Genome meets epigenome: Sequencing and analysis of the DNA methylome Developmental Biology. 319: 462. DOI: 10.1016/J.Ydbio.2008.05.004 |
0.761 |
|
| 2007 |
Chekanova JA, Gregory BD, Reverdatto SV, Chen H, Kumar R, Hooker T, Yazaki J, Li P, Skiba N, Peng Q, Alonso J, Brukhin V, Grossniklaus U, Ecker JR, Belostotsky DA. Genome-Wide High-Resolution Mapping of Exosome Substrates Reveals Hidden Features in the Arabidopsis Transcriptome Cell. 131: 1340-1353. PMID 18160042 DOI: 10.1016/J.Cell.2007.10.056 |
0.795 |
|
| 2007 |
O'Malley RC, Alonso JM, Kim CJ, Leisse TJ, Ecker JR. An adapter ligation-mediated PCR method for high-throughput mapping of T-DNA inserts in the Arabidopsis genome. Nature Protocols. 2: 2910-7. PMID 18007627 DOI: 10.1038/Nprot.2007.425 |
0.775 |
|
| 2007 |
Li H, He Z, Lu G, Lee SC, Alonso J, Ecker JR, Luan S. A WD40 domain cyclophilin interacts with histone H3 and functions in gene repression and organogenesis in Arabidopsis. The Plant Cell. 19: 2403-16. PMID 17704213 DOI: 10.1105/Tpc.107.053579 |
0.551 |
|
| 2007 |
Yazaki J, Gregory BD, Ecker JR. Mapping the genome landscape using tiling array technology Current Opinion in Plant Biology. 10: 534-542. PMID 17703988 DOI: 10.1016/J.Pbi.2007.07.006 |
0.802 |
|
| 2007 |
Gentry MS, Dowen RH, Worby CA, Mattoo S, Ecker JR, Dixon JE. The phosphatase laforin crosses evolutionary boundaries and links carbohydrate metabolism to neuronal disease. The Journal of Cell Biology. 178: 477-88. PMID 17646401 DOI: 10.1083/Jcb.200704094 |
0.779 |
|
| 2007 |
Clark RM, Schweikert G, Toomajian C, Ossowski S, Zeller G, Shinn P, Warthmann N, Hu TT, Fu G, Hinds DA, Chen H, Frazer KA, Huson DH, Schölkopf B, Nordborg M, ... ... Ecker JR, et al. Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana. Science (New York, N.Y.). 317: 338-42. PMID 17641193 DOI: 10.1126/Science.1138632 |
0.321 |
|
| 2007 |
Borevitz JO, Hazen SP, Michael TP, Morris GP, Baxter IR, Hu TT, Chen H, Werner JD, Nordborg M, Salt DE, Kay SA, Chory J, Weigel D, Jones JD, Ecker JR. Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 104: 12057-62. PMID 17626786 DOI: 10.1073/Pnas.0705323104 |
0.713 |
|
| 2007 |
Swiezewski S, Crevillen P, Liu F, Ecker JR, Jerzmanowski A, Dean C. Small RNA-mediated chromatin silencing directed to the 3' region of the Arabidopsis gene encoding the developmental regulator, FLC. Proceedings of the National Academy of Sciences of the United States of America. 104: 3633-8. PMID 17360694 DOI: 10.1073/Pnas.0611459104 |
0.358 |
|
| 2006 |
Chilley PM, Casson SA, Tarkowski P, Hawkins N, Wang KLC, Hussey PJ, Beale M, Ecker JR, Sandberg GK, Lindsey K. The POLARIS peptide of Arabidopsis regulates auxin transport root growth via effects on ethylene signaling Plant Cell. 18: 3058-3072. PMID 17138700 DOI: 10.1105/Tpc.106.040790 |
0.494 |
|
| 2006 |
Hutchison CE, Li J, Argueso C, Gonzalez M, Lee E, Lewis MW, Maxwell BB, Perdue TD, Schaller GE, Alonso JM, Ecker JR, Kieber JJ. The Arabidopsis histidine phosphotransfer proteins are redundant positive regulators of cytokinin signaling. The Plant Cell. 18: 3073-87. PMID 17122069 DOI: 10.1105/Tpc.106.045674 |
0.795 |
|
| 2006 |
Kim SA, Punshon T, Lanzirotti A, Li L, Alonso JM, Ecker JR, Kaplan J, Guerinot ML. Localization of iron in Arabidopsis seed requires the vacuolar membrane transporter VIT1. Science (New York, N.Y.). 314: 1295-8. PMID 17082420 DOI: 10.1126/Science.1132563 |
0.41 |
|
| 2006 |
Mori IC, Murata Y, Yang Y, Munemasa S, Wang YF, Andreoli S, Tiriac H, Alonso JM, Harper JF, Ecker JR, Kwak JM, Schroeder JI. CDPKs CPK6 and CPK3 function in ABA regulation of guard cell S-type anion- and Ca(2+)-permeable channels and stomatal closure. Plos Biology. 4: e327. PMID 17032064 DOI: 10.1371/Journal.Pbio.0040327 |
0.465 |
|
| 2006 |
Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H, Henderson IR, Shinn P, Pellegrini M, Jacobsen SE, Ecker JR. Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell. 126: 1189-201. PMID 16949657 DOI: 10.1016/J.Cell.2006.08.003 |
0.817 |
|
| 2006 |
Olmedo G, Guo H, Gregory BD, Nourizadeh SD, Aguilar-Henonin L, Li H, An F, Guzman P, Ecker JR. ETHYLENE-INSENSITIVE5 encodes a 5′→3′ exoribonuclease required for regulation of the EIN3-targeting F-box proteins EBF1/2 Proceedings of the National Academy of Sciences of the United States of America. 103: 13286-13293. PMID 16920797 DOI: 10.1073/Pnas.0605528103 |
0.701 |
|
| 2006 |
Yoshida H, Wang KLC, Chang CM, Mori K, Uchida E, Ecker JR. The ACC synthase TOE sequence is required for interaction with ETO1 family proteins and destabilization of target proteins Plant Molecular Biology. 62: 427-437. PMID 16897471 DOI: 10.1007/S11103-006-9029-7 |
0.649 |
|
| 2006 |
Chen JG, Ullah H, Temple B, Liang J, Guo J, Alonso JM, Ecker JR, Jones AM. RACK1 mediates multiple hormone responsiveness and developmental processes in Arabidopsis. Journal of Experimental Botany. 57: 2697-708. PMID 16829549 DOI: 10.1093/Jxb/Erl035 |
0.523 |
|
| 2006 |
Lariguet P, Schepens I, Hodgson D, Pedmale UV, Trevisan M, Kami C, de Carbonnel M, Alonso JM, Ecker JR, Liscum E, Fankhauser C. PHYTOCHROME KINASE SUBSTRATE 1 is a phototropin 1 binding protein required for phototropism. Proceedings of the National Academy of Sciences of the United States of America. 103: 10134-9. PMID 16777956 DOI: 10.1073/Pnas.0603799103 |
0.481 |
|
| 2006 |
Rudella A, Friso G, Alonso JM, Ecker JR, van Wijk KJ. Downregulation of ClpR2 leads to reduced accumulation of the ClpPRS protease complex and defects in chloroplast biogenesis in Arabidopsis. The Plant Cell. 18: 1704-21. PMID 16766689 DOI: 10.1105/Tpc.106.042861 |
0.469 |
|
| 2006 |
Alonso JM, Ecker JR. Moving forward in reverse: genetic technologies to enable genome-wide phenomic screens in Arabidopsis. Nature Reviews. Genetics. 7: 524-36. PMID 16755288 DOI: 10.1038/Nrg1893 |
0.532 |
|
| 2006 |
Ciuffi A, Mitchell RS, Hoffmann C, Leipzig J, Shinn P, Ecker JR, Bushman FD. Integration site selection by HIV-based vectors in dividing and growth-arrested IMR-90 lung fibroblasts. Molecular Therapy : the Journal of the American Society of Gene Therapy. 13: 366-73. PMID 16325473 DOI: 10.1016/J.Ymthe.2005.10.009 |
0.335 |
|
| 2005 |
Ciuffi A, Llano M, Poeschla E, Hoffmann C, Leipzig J, Shinn P, Ecker JR, Bushman F. A role for LEDGF/p75 in targeting HIV DNA integration Nature Medicine. 11: 1287-1289. PMID 16311605 DOI: 10.1038/Nm1329 |
0.307 |
|
| 2005 |
Overvoorde PJ, Okushima Y, Alonso JM, Chan A, Chang C, Ecker JR, Hughes B, Liu A, Onodera C, Quach H, Smith A, Yu G, Theologis A. Functional genomic analysis of the AUXIN/INDOLE-3-ACETIC ACID gene family members in Arabidopsis thaliana. The Plant Cell. 17: 3282-300. PMID 16284307 DOI: 10.1105/Tpc.105.036723 |
0.54 |
|
| 2005 |
Mason MG, Mathews DE, Argyros DA, Maxwell BB, Kieber JJ, Alonso JM, Ecker JR, Schaller GE. Multiple type-B response regulators mediate cytokinin signal transduction in Arabidopsis. The Plant Cell. 17: 3007-18. PMID 16227453 DOI: 10.1105/Tpc.105.035451 |
0.694 |
|
| 2005 |
Barr SD, Leipzig J, Shinn P, Ecker JR, Bushman FD. Integration targeting by avian sarcoma-leukosis virus and human immunodeficiency virus in the chicken genome Journal of Virology. 79: 12035-12044. PMID 16140779 DOI: 10.1128/Jvi.79.18.12035-12044.2005 |
0.322 |
|
| 2005 |
Nagpal P, Ellis CM, Weber H, Ploense SE, Barkawi LS, Guilfoyle TJ, Hagen G, Alonso JM, Cohen JD, Farmer EE, Ecker JR, Reed JW. Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation. Development (Cambridge, England). 132: 4107-18. PMID 16107481 DOI: 10.1242/Dev.01955 |
0.524 |
|
| 2005 |
Yoshida H, Nagata M, Saito K, Kevin WLC, Ecker JR. Arabidopsis ETO1 specifically interacts with and negatively regulates type 2 1-aminocyclopropane-1-carboxylate synthases Bmc Plant Biology. 5. PMID 16091151 DOI: 10.1186/1471-2229-5-14 |
0.595 |
|
| 2005 |
Hazen SP, Schultz TF, Pruneda-Paz JL, Borevitz JO, Ecker JR, Kay SA. LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms. Proceedings of the National Academy of Sciences of the United States of America. 102: 10387-92. PMID 16006522 DOI: 10.1073/Pnas.0503029102 |
0.632 |
|
| 2005 |
Wilmoth JC, Wang S, Tiwari SB, Joshi AD, Hagen G, Guilfoyle TJ, Alonso JM, Ecker JR, Reed JW. NPH4/ARF7 and ARF19 promote leaf expansion and auxin-induced lateral root formation. The Plant Journal : For Cell and Molecular Biology. 43: 118-30. PMID 15960621 DOI: 10.1111/J.1365-313X.2005.02432.X |
0.528 |
|
| 2005 |
Werner JD, Borevitz JO, Uhlenhaut NH, Ecker JR, Chory J, Weigel D. FRIGIDA-independent variation in flowering time of natural Arabidopsis thaliana accessions. Genetics. 170: 1197-207. PMID 15911588 DOI: 10.1534/Genetics.104.036533 |
0.694 |
|
| 2005 |
Hazen SP, Borevitz JO, Harmon FG, Pruneda-Paz JL, Schultz TF, Yanovsky MJ, Liljegren SJ, Ecker JR, Kay SA. Rapid array mapping of circadian clock and developmental mutations in Arabidopsis. Plant Physiology. 138: 990-7. PMID 15908595 DOI: 10.1104/Pp.105.061408 |
0.803 |
|
| 2005 |
Lewinski MK, Bisgrove D, Shinn P, Chen H, Hoffmann C, Hannenhalli S, Verdin E, Berry CC, Ecker JR, Bushman FD. Genome-wide analysis of chromosomal features repressing human immunodeficiency virus transcription. Journal of Virology. 79: 6610-9. PMID 15890899 DOI: 10.1128/Jvi.79.11.6610-6619.2005 |
0.344 |
|
| 2005 |
Zhang X, Odom DT, Koo SH, Conkright MD, Canettieri G, Best J, Chen H, Jenner R, Herbolsheimer E, Jacobsen E, Kadam S, Ecker JR, Emerson B, Hogenesch JB, Unterman T, et al. Genome-wide analysis of cAMP-response element binding protein occupancy, phosphorylation, and target gene activation in human tissues. Proceedings of the National Academy of Sciences of the United States of America. 102: 4459-64. PMID 15753290 DOI: 10.1073/Pnas.0501076102 |
0.533 |
|
| 2005 |
Ryu JS, Kim JI, Kunkel T, Kim BC, Cho DS, Hong SH, Kim SH, Fernández AP, Kim Y, Alonso JM, Ecker JR, Nagy F, Lim PO, Song PS, Schäfer E, et al. Phytochrome-specific type 5 phosphatase controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. Cell. 120: 395-406. PMID 15707897 DOI: 10.1016/J.Cell.2004.12.019 |
0.456 |
|
| 2005 |
Werner JD, Borevitz JO, Warthmann N, Trainer GT, Ecker JR, Chory J, Weigel D. Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation. Proceedings of the National Academy of Sciences of the United States of America. 102: 2460-5. PMID 15695584 DOI: 10.1073/Pnas.0409474102 |
0.724 |
|
| 2005 |
Okushima Y, Overvoorde PJ, Arima K, Alonso JM, Chan A, Chang C, Ecker JR, Hughes B, Lui A, Nguyen D, Onodera C, Quach H, Smith A, Yu G, Theologis A. Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19. The Plant Cell. 17: 444-63. PMID 15659631 DOI: 10.1105/Tpc.104.028316 |
0.545 |
|
| 2005 |
Liu G, Holub EB, Alonso JM, Ecker JR, Fobert PR. An Arabidopsis NPR1-like gene, NPR4, is required for disease resistance. The Plant Journal : For Cell and Molecular Biology. 41: 304-18. PMID 15634206 DOI: 10.1111/J.1365-313X.2004.02296.X |
0.546 |
|
| 2005 |
Mockler TC, Chan S, Sundaresan A, Chen H, Jacobsen SE, Ecker JR. Applications of DNA tiling arrays for whole-genome analysis. Genomics. 85: 1-15. PMID 15607417 DOI: 10.1016/J.Ygeno.2004.10.005 |
0.655 |
|
| 2005 |
Prigge MJ, Otsuga D, Alonso JM, Ecker JR, Drews GN, Clark SE. Class III homeodomain-leucine zipper gene family members have overlapping, antagonistic, and distinct roles in Arabidopsis development. The Plant Cell. 17: 61-76. PMID 15598805 DOI: 10.1105/Tpc.104.026161 |
0.501 |
|
| 2005 |
Mockler TC, Chan S, Sundaresan A, Chen H, Jacobsen SE, Ecker JR. Corrigendum to ‘‘Applications of DNA tiling arrays for whole-genome analysis’’ [Genomics 85 (2005) 1–15] Genomics. 85: 655. DOI: 10.1016/J.Ygeno.2005.01.004 |
0.328 |
|
| 2004 |
Monte E, Tepperman JM, Al-Sady B, Kaczorowski KA, Alonso JM, Ecker JR, Li X, Zhang Y, Quail PH. The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development. Proceedings of the National Academy of Sciences of the United States of America. 101: 16091-8. PMID 15505214 DOI: 10.1073/Pnas.0407107101 |
0.514 |
|
| 2004 |
Borevitz JO, Ecker JR. Plant genomics: the third wave. Annual Review of Genomics and Human Genetics. 5: 443-77. PMID 15485356 DOI: 10.1146/Annurev.Genom.5.061903.180017 |
0.633 |
|
| 2004 |
Shibuya K, Barry KG, Ciardi JA, Loucas HM, Underwood BA, Nourizadeh S, Ecker JR, Klee HJ, Clark DG. The central role of PhEIN2 in ethylene responses throughout plant development in petunia1 Plant Physiology. 136: 2900-2912. PMID 15466231 DOI: 10.1104/Pp.104.046979 |
0.379 |
|
| 2004 |
Binder BM, Mortimore LA, Stepanova AN, Ecker JR, Bleecker AB. Short-term growth responses to ethylene in Arabidopsis seedlings are EIN3/EIL1 independent. Plant Physiology. 136: 2921-7. PMID 15466219 DOI: 10.1104/Pp.104.050393 |
0.547 |
|
| 2004 |
Mitchell RS, Beitzel BF, Schroder AR, Shinn P, Chen H, Berry CC, Ecker JR, Bushman FD. Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences. Plos Biology. 2: E234. PMID 15314653 DOI: 10.1371/Journal.Pbio.0020234 |
0.341 |
|
| 2004 |
Mockler TC, Yu X, Shalitin D, Parikh D, Michael TP, Liou J, Huang J, Smith Z, Alonso JM, Ecker JR, Chory J, Lin C. Regulation of flowering time in Arabidopsis by K homology domain proteins. Proceedings of the National Academy of Sciences of the United States of America. 101: 12759-64. PMID 15310842 DOI: 10.1073/Pnas.0404552101 |
0.74 |
|
| 2004 |
Li H, Johnson P, Stepanova A, Alonso JM, Ecker JR. Convergence of signaling pathways in the control of differential cell growth in Arabidopsis. Developmental Cell. 7: 193-204. PMID 15296716 DOI: 10.1016/J.Devcel.2004.07.002 |
0.719 |
|
| 2004 |
Wolyn DJ, Borevitz JO, Loudet O, Schwartz C, Maloof J, Ecker JR, Berry CC, Chory J. Light-response quantitative trait loci identified with composite interval and eXtreme array mapping in Arabidopsis thaliana. Genetics. 167: 907-17. PMID 15238539 DOI: 10.1534/Genetics.103.024810 |
0.686 |
|
| 2004 |
Pfund C, Tans-Kersten J, Dunning FM, Alonso JM, Ecker JR, Allen C, Bent AF. Flagellin is not a major defense elicitor in Ralstonia solanacearum cells or extracts applied to Arabidopsis thaliana. Molecular Plant-Microbe Interactions : Mpmi. 17: 696-706. PMID 15195952 DOI: 10.1094/Mpmi.2004.17.6.696 |
0.476 |
|
| 2004 |
Chen JG, Pandey S, Huang J, Alonso JM, Ecker JR, Assmann SM, Jones AM. GCR1 can act independently of heterotrimeric G-protein in response to brassinosteroids and gibberellins in Arabidopsis seed germination. Plant Physiology. 135: 907-15. PMID 15181210 DOI: 10.1104/Pp.104.038992 |
0.482 |
|
| 2004 |
Tyler L, Thomas SG, Hu J, Dill A, Alonso JM, Ecker JR, Sun TP. Della proteins and gibberellin-regulated seed germination and floral development in Arabidopsis. Plant Physiology. 135: 1008-19. PMID 15173565 DOI: 10.1104/Pp.104.039578 |
0.506 |
|
| 2004 |
Page ML, Hamel PP, Gabilly ST, Zegzouti H, Perea JV, Alonso JM, Ecker JR, Theg SM, Christensen SK, Merchant S. A homolog of prokaryotic thiol disulfide transporter CcdA is required for the assembly of the cytochrome b6f complex in Arabidopsis chloroplasts. The Journal of Biological Chemistry. 279: 32474-82. PMID 15159384 DOI: 10.1074/Jbc.M404285200 |
0.47 |
|
| 2004 |
Wang KLC, Yoshida H, Lurin C, Ecker JR. Regulation of ethylene gas biosynthesis by the Arabidopsis ETO1 protein Nature. 428: 945-950. PMID 15118728 DOI: 10.1038/Nature02516 |
0.66 |
|
| 2004 |
Novillo F, Alonso JM, Ecker JR, Salinas J. CBF2/DREB1C is a negative regulator of CBF1/DREB1B and CBF3/DREB1A expression and plays a central role in stress tolerance in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 101: 3985-90. PMID 15004278 DOI: 10.1073/Pnas.0303029101 |
0.527 |
|
| 2004 |
To JP, Haberer G, Ferreira FJ, Deruère J, Mason MG, Schaller GE, Alonso JM, Ecker JR, Kieber JJ. Type-A Arabidopsis response regulators are partially redundant negative regulators of cytokinin signaling. The Plant Cell. 16: 658-71. PMID 14973166 DOI: 10.1105/Tpc.018978 |
0.81 |
|
| 2004 |
Guo H, Ecker JR. The ethylene signaling pathway: New insights Current Opinion in Plant Biology. 7: 40-49. PMID 14732440 DOI: 10.1016/J.Pbi.2003.11.011 |
0.523 |
|
| 2004 |
Ecker JR. Reentry of the ethylene MPK6 module Plant Cell. 16: 3169-3173. DOI: 10.1105/Tpc.104.161210 |
0.301 |
|
| 2004 |
Ecker JR, Cook D. Genome studies and molecular genetics: Unwrapping new layers of complexity in plant genomes Current Opinion in Plant Biology. 7: 99-101. DOI: 10.1016/J.Pbi.2004.01.017 |
0.316 |
|
| 2003 |
Guo H, Ecker JR. Plant responses to ethylene gas are mediated by SCFEBF1/EBF2- dependent proteolysis of EIN3 transcription factor Cell. 115: 667-677. PMID 14675532 DOI: 10.1016/S0092-8674(03)00969-3 |
0.558 |
|
| 2003 |
Catala R, Santos E, Alonso JM, Ecker JR, Martinez-Zapater JM, Salinas J. Mutations in the Ca2+/H+ transporter CAX1 increase CBF/DREB1 expression and the cold-acclimation response in Arabidopsis. The Plant Cell. 15: 2940-51. PMID 14630965 DOI: 10.1105/Tpc.015248 |
0.479 |
|
| 2003 |
Lariguet P, Boccalandro HE, Alonso JM, Ecker JR, Chory J, Casal JJ, Fankhauser C. A growth regulatory loop that provides homeostasis to phytochrome a signaling. The Plant Cell. 15: 2966-78. PMID 14615593 DOI: 10.1105/Tpc.014563 |
0.627 |
|
| 2003 |
Michael TP, Salomé PA, Yu HJ, Spencer TR, Sharp EL, McPeek MA, Alonso JM, Ecker JR, McClung CR. Enhanced fitness conferred by naturally occurring variation in the circadian clock. Science (New York, N.Y.). 302: 1049-53. PMID 14605371 DOI: 10.1126/Science.1082971 |
0.456 |
|
| 2003 |
Yamada K, Lim J, Dale JM, Chen H, Shinn P, Palm CJ, Southwick AM, Wu HC, Kim C, Nguyen M, Pham P, Cheuk R, Karlin-Newmann G, Liu SX, Lam B, ... ... Ecker JR, et al. Empirical analysis of transcriptional activity in the Arabidopsis genome. Science (New York, N.Y.). 302: 842-6. PMID 14593172 DOI: 10.1126/Science.1088305 |
0.817 |
|
| 2003 |
Monte E, Alonso JM, Ecker JR, Zhang Y, Li X, Young J, Austin-Phillips S, Quail PH. Isolation and characterization of phyC mutants in Arabidopsis reveals complex crosstalk between phytochrome signaling pathways. The Plant Cell. 15: 1962-80. PMID 12953104 DOI: 10.1105/Tpc.012971 |
0.498 |
|
| 2003 |
Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, Shinn P, Stevenson DK, Zimmerman J, Barajas P, Cheuk R, Gadrinab C, Heller C, Jeske A, Koesema E, Meyers CC, ... ... Ecker JR, et al. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science (New York, N.Y.). 301: 653-7. PMID 12893945 DOI: 10.1126/Science.1086391 |
0.771 |
|
| 2003 |
Alonso JM, Stepanova AN, Solano R, Wisman E, Ferrari S, Ausubel FM, Ecker JR. Five components of the ethylene-response pathway identified in a screen for weak ethylene-insensitive mutants in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 100: 2992-7. PMID 12606727 DOI: 10.1073/Pnas.0438070100 |
0.806 |
|
| 2003 |
Mackey D, Belkhadir Y, Alonso JM, Ecker JR, Dangl JL. Arabidopsis RIN4 is a target of the type III virulence effector AvrRpt2 and modulates RPS2-mediated resistance. Cell. 112: 379-89. PMID 12581527 DOI: 10.1016/S0092-8674(03)00040-0 |
0.48 |
|
| 2003 |
Larkin RM, Alonso JM, Ecker JR, Chory J. GUN4, a regulator of chlorophyll synthesis and intracellular signaling. Science (New York, N.Y.). 299: 902-6. PMID 12574634 DOI: 10.1126/Science.1079978 |
0.605 |
|
| 2003 |
Ullah H, Chen JG, Temple B, Boyes DC, Alonso JM, Davis KR, Ecker JR, Jones AM. The beta-subunit of the Arabidopsis G protein negatively regulates auxin-induced cell division and affects multiple developmental processes. The Plant Cell. 15: 393-409. PMID 12566580 DOI: 10.1105/Tpc.006148 |
0.525 |
|
| 2003 |
Strand A, Asami T, Alonso J, Ecker JR, Chory J. Chloroplast to nucleus communication triggered by accumulation of Mg-protoporphyrinix Nature. 421: 79-83. PMID 12511958 DOI: 10.1038/Nature01204 |
0.636 |
|
| 2002 |
Yoshida R, Hobo T, Ichimura K, Mizoguchi T, Takahashi F, Aronso J, Ecker JR, Shinozaki K. ABA-activated SnRK2 protein kinase is required for dehydration stress signaling in Arabidopsis Plant and Cell Physiology. 43: 1473-1483. PMID 12514244 DOI: 10.1093/Pcp/Pcf188 |
0.343 |
|
| 2002 |
Zhao Y, Hull AK, Gupta NR, Goss KA, Alonso J, Ecker JR, Normanly J, Chory J, Celenza JL. Trp-dependent auxin biosynthesis in Arabidopsis: Involvement of cytochrome P450s CYP79B2 and CYP79B3 Genes and Development. 16: 3100-3112. PMID 12464638 DOI: 10.1101/Gad.1035402 |
0.625 |
|
| 2002 |
Beachy R, Bennetzen JL, Chassy BM, Chrispeels M, Chory J, Ecker JR, Noel JP, Kay SA, Dean C, Lamb C, Jones J, Santerre CR, Schroeder JI, Umen J, Yanofsky M, et al. Divergent perspectives on GM food. Nature Biotechnology. 20: 1195-6; author reply. PMID 12454665 DOI: 10.1038/Nbt1202-1195 |
0.63 |
|
| 2002 |
Friedrichsen DM, Nemhauser J, Muramitsu T, Maloof JN, Alonso J, Ecker JR, Furuya M, Chory J. Three redundant brassinosteroid early response genes encode putative bHLH transcription factors required for normal growth Genetics. 162: 1445-1456. PMID 12454087 |
0.626 |
|
| 2002 |
Schroeder DF, Gahrtz M, Maxwell BB, Cook RK, Kan JM, Alonso JM, Ecker JR, Chory J. De-etiolated 1 and damaged DNA binding protein 1 interact to regulate Arabidopsis photomorphogenesis Current Biology. 12: 1462-1472. PMID 12225661 DOI: 10.1016/S0960-9822(02)01106-5 |
0.642 |
|
| 2002 |
Schröder ARW, Shinn P, Chen H, Berry C, Ecker JR, Bushman F. HIV-1 integration in the human genome favors active genes and local hotspots Cell. 110: 521-529. PMID 12202041 DOI: 10.1016/S0092-8674(02)00864-4 |
0.311 |
|
| 2002 |
Hu J, Aguirre M, Peto C, Alonso J, Ecker J, Chory J. A role for peroxisomes in photomorphogenesis and development of Arabidopsis. Science (New York, N.Y.). 297: 405-9. PMID 12130786 DOI: 10.1126/Science.1073633 |
0.634 |
|
| 2002 |
Ichimura K, Shinozaki K, Tena G, Sheen J, Henry Y, Champion A, Kreis M, Zhang S, Hirt H, Wilson C, Heberle-Bors E, Ellis BE, Morris PC, Innes RW, Ecker JR, et al. Mitogen-activated protein kinase cascades in plants: a new nomenclature Trends in Plant Science. 7: 301-308. PMID 12119167 DOI: 10.1016/S1360-1385(02)02302-6 |
0.317 |
|
| 2002 |
Zheng H, Bednarek SY, Sanderfoot AA, Alonso J, Ecker JR, Raikhel NV. NPSN11 is a cell plate-associated SNARE protein that interacts with the syntaxin KNOLLE. Plant Physiology. 129: 530-9. PMID 12068098 DOI: 10.1104/Pp.003970 |
0.504 |
|
| 2002 |
Wang KLC, Li H, Ecker JR. Ethylene biosynthesis and signaling networks Plant Cell. 14: S131-S151. PMID 12045274 DOI: 10.1105/Tpc.001768 |
0.559 |
|
| 2002 |
Beachy R, Bennetzen JL, Chassy BM, Chrispeels M, Chory J, Ecker JR, Noel JP, Kay SA, Dean C, Lamb C, Jones J, Santerre CR, Schroeder JI, Umen J, Yanofsky M, et al. Reply to 'Divergent perspectives on GM food' Nature Biotechnology. 20: 1197-1197. DOI: 10.1038/Nbt1202-1197A |
0.63 |
|
| 2001 |
Alonso JM, Ecker JR. The ethylene pathway: a paradigm for plant hormone signaling and interaction Science"S Stke [Electronic Resource] : Signal Transduction Knowledge Environment. 2001: RE1. PMID 11752640 DOI: 10.1126/Stke.2001.70.Re1 |
0.514 |
|
| 2001 |
Jarillo JA, Capel J, Tang RH, Yang HQ, Alonso JM, Ecker JR, Cashmore AR. An Arabidopsis circadian clock component interacts with both CRY1 and phyB Nature. 410: 487-490. PMID 11260718 DOI: 10.1038/35068589 |
0.318 |
|
| 2000 |
Theologis A, Ecker JR, Palm CJ, Federspiel NA, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman CL, Brooks SY, Buehler E, Chan A, Chao Q, Chen H, et al. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Nature. 408: 816-20. PMID 11130712 DOI: 10.1038/35048500 |
0.584 |
|
| 2000 |
Stepanova AN, Ecker JR. Ethylene signaling: From mutants to molecules Current Opinion in Plant Biology. 3: 353-360. PMID 11019801 DOI: 10.1016/S1369-5266(00)00096-0 |
0.63 |
|
| 2000 |
Chory J, Ecker JR, Briggs S, Caboche M, Coruzzi GM, Cook D, Dangl J, Grant S, Guerinot ML, Henikoff S, Martienssen R, Okada K, Raikhel NV, Somerville CR, Weigel D. National Science Foundation-Sponsored Workshop Report: 'The 2010 Project': Functional genomics and the virtual plant. A blueprint for understanding how plants are built and how to improve them Plant Physiology. 123: 423-425. PMID 10859172 DOI: 10.1104/Pp.123.2.423 |
0.66 |
|
| 2000 |
Curie C, Alonso JM, Le Jean M, Ecker JR, Briat JF. Involvement of NRAMP1 from Arabidopsis thaliana in iron transport Biochemical Journal. 347: 749-755. PMID 10769179 DOI: 10.1042/0264-6021:3470749 |
0.311 |
|
| 1999 |
Mozo T, Dewar K, Dunn P, Ecker JR, Fischer S, Kloska S, Lehrach H, Marra M, Martienssen R, Meier-Ewert S, Altmann T. A complete BAC-based physical map of the Arabidopsis thaliana genome Nature Genetics. 22: 271-275. PMID 10391215 DOI: 10.1038/10334 |
0.333 |
|
| 1999 |
Alonso JM, Hirayama T, Roman G, Nourizadeh S, Ecker JR. EIN2, a bifunctional transducer of ethylene and stress responses in Arabidopsis. Science (New York, N.Y.). 284: 2148-52. PMID 10381874 DOI: 10.1126/Science.284.5423.2148 |
0.545 |
|
| 1999 |
Hirayama T, Kieber JJ, Hirayama N, Kogan M, Guzman P, Nourizadeh S, Alonso JM, Dailey WP, Dancis A, Ecker JR. RESPONSIVE-TO-ANTAGONIST1, a Menkes/Wilson disease-related copper transporter, is required for ethylene signaling in Arabidopsis. Cell. 97: 383-93. PMID 10319818 DOI: 10.1016/S0092-8674(00)80747-3 |
0.672 |
|
| 1998 |
Solano R, Ecker JR. Ethylene gas: Perception, signaling and response Current Opinion in Plant Biology. 1: 393-398. PMID 10066624 DOI: 10.1016/S1369-5266(98)80262-8 |
0.752 |
|
| 1998 |
Johnson PR, Ecker JR. The ethylene gas signal transduction pathway: A molecular perspective Annual Review of Genetics. 32: 227-254. PMID 9928480 DOI: 10.1146/Annurev.Genet.32.1.227 |
0.366 |
|
| 1998 |
Solano R, Stepanova A, Chao Q, Ecker JR. Nuclear events in ethylene signaling: A transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1 Genes and Development. 12: 3703-3714. PMID 9851977 DOI: 10.1101/Gad.12.23.3703 |
0.818 |
|
| 1998 |
Kwok SF, Solano R, Tsuge T, Chamovitz DA, Ecker JR, Matsui M, Deng XW. Arabidopsis homologs of a c-Jun coactivator are present both in monomeric form and in the COP9 complex, and their abundance is differentially affected by the pleiotropic cop/det/fus mutations Plant Cell. 10: 1779-1790. PMID 9811788 DOI: 10.1105/Tpc.10.11.1779 |
0.741 |
|
| 1998 |
Hua J, Sakai H, Nourizadeh S, Chen QG, Bleecker AB, Ecker JR, Meyerowitz EM. EIN4 and ERS2 are members of the putative ethylene receptor gene family in arabidopsis Plant Cell. 10: 1321-1332. PMID 9707532 DOI: 10.1105/Tpc.10.8.1321 |
0.354 |
|
| 1998 |
Ecker JR. Genes blossom from a weed: The arabidopais genome initiative Faseb Journal. 12: A1306. DOI: 10.1038/35030 |
0.364 |
|
| 1998 |
Walden R, Ecker JR. Cell signalling and gene regulation: piecing the puzzle together Current Opinion in Plant Biology. 1: 375-377. DOI: 10.1016/S1369-5266(98)80258-6 |
0.343 |
|
| 1998 |
McGrath RB, Ecker JR. Ethylene signaling in Arabidopsis: Events from the membrane to the nucleus Plant Physiology and Biochemistry. 36: 103-113. DOI: 10.1016/S0981-9428(98)80095-8 |
0.375 |
|
| 1997 |
Chao Q, Rothenberg M, Solano R, Roman G, Terzaghi W, Ecker JR. Activation of the ethylene gas response pathway in Arabidopsis by the nuclear protein ETHYLENE-INSENSITIVE3 and related proteins. Cell. 89: 1133-44. PMID 9215635 DOI: 10.1016/S0092-8674(00)80300-1 |
0.79 |
|
| 1997 |
Mulligan RM, Chory J, Ecker JR. Signaling in plants Proceedings of the National Academy of Sciences of the United States of America. 94: 2793-2795. PMID 9096297 DOI: 10.1073/Pnas.94.7.2793 |
0.565 |
|
| 1996 |
Lehman A, Black R, Ecker JR. HOOKLESS1, an ethylene response gene, is required for differential cell elongation in the Arabidopsis hypocotyl. Cell. 85: 183-94. PMID 8612271 DOI: 10.1016/S0092-8674(00)81095-8 |
0.385 |
|
| 1995 |
Roman G, Ecker JR. Genetic analysis of a seedling stress response to ethylene in Arabidopsis. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 350: 75-81. PMID 8577853 DOI: 10.1098/Rstb.1995.0140 |
0.55 |
|
| 1995 |
Roman G, Lubarsky B, Kieber JJ, Rothenberg M, Ecker JR. Genetic analysis of ethylene signal transduction in Arabidopsis thaliana: five novel mutant loci integrated into a stress response pathway. Genetics. 139: 1393-409. PMID 7768447 |
0.683 |
|
| 1995 |
Goodman HM, Ecker JR, Dean C. The genome of Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 92: 10831-5. PMID 7479893 DOI: 10.1073/Pnas.92.24.10831 |
0.38 |
|
| 1994 |
Ecker JR, Theologis A. 19 Ethylene: A Unique Plant Signaling Molecule Cold Spring Harbor Monograph Archive. 27: 485-521. DOI: 10.1101/087969428.27.485 |
0.315 |
|
| 1993 |
Kieber JJ, Rothenberg M, Roman G, Feldmann KA, Ecker JR. CTR1, a negative regulator of the ethylene response pathway in Arabidopsis, encodes a member of the raf family of protein kinases. Cell. 72: 427-41. PMID 8431946 DOI: 10.1016/0092-8674(93)90119-B |
0.713 |
|
| 1993 |
Kieber JJ, Ecker JR. Ethylene gas: it's not just for ripening any more! Trends in Genetics : Tig. 9: 356-62. PMID 8273151 DOI: 10.1016/0168-9525(93)90041-F |
0.606 |
|
| 1993 |
Rothenberg M, Ecker JR. Mutant analysis as an experimental approach towards understanding plant hormone action Seminars in Developmental Biology. 4: 3-13. DOI: 10.1006/Sedb.1993.1002 |
0.324 |
|
| 1992 |
Guzmán P, Ecker JR. Exploiting the triple response of Arabidopsis to identify ethylene-related mutants. The Plant Cell. 2: 513-23. PMID 2152173 DOI: 10.1105/Tpc.2.6.513 |
0.306 |
|
| 1992 |
Schindler U, Menkens AE, Beckmann H, Ecker JR, Cashmore AR. Heterodimerization between light-regulated and ubiquitously expressed Arabidopsis GBF bZIP proteins. The Embo Journal. 11: 1261-1273. DOI: 10.1002/J.1460-2075.1992.Tb05170.X |
0.364 |
|
| 1990 |
Ecker JR. PFGE and YAC analysis of the Arabidopsis genome Methods. 1: 186-194. DOI: 10.1016/S1046-2023(05)80134-3 |
0.349 |
|
| 1989 |
Guzmán P, Ecker JR. Development of large DNA methods for plants: molecular cloning of large segments of Arabidopsis and carrot DNA into yeast. Nucleic Acids Research. 16: 11091-105. PMID 3060856 DOI: 10.1093/Nar/16.23.11091 |
0.365 |
|
| 1987 |
Ecker JR, Davis RW. Plant defense genes are regulated by ethylene. Proceedings of the National Academy of Sciences of the United States of America. 84: 5202-6. PMID 16593860 DOI: 10.1073/Pnas.84.15.5202 |
0.522 |
|
| 1986 |
Ecker JR, Davis RW. Inhibition of gene expression in plant cells by expression of antisense RNA. Proceedings of the National Academy of Sciences of the United States of America. 83: 5372-6. PMID 16593734 DOI: 10.1073/Pnas.83.15.5372 |
0.53 |
|
| 1984 |
Ecker JR, Kudler L, Hyman RW. Variation in the structure of varicella-zoster virus DNA Intervirology. 21: 25-37. PMID 6321392 DOI: 10.1159/000149500 |
0.641 |
|
| 1983 |
Pichini B, Ecker JR, Grose C, Hyman RW. DNA mapping of paired varicella-zoster virus isolates from patients with shingles. Lancet (London, England). 2: 1223-5. PMID 6139571 DOI: 10.1016/S0140-6736(83)91271-0 |
0.628 |
|
| 1983 |
Hyman RW, Ecker JR, Tenser RB. Varicella-zoster virus RNA in human trigeminal ganglia. Lancet (London, England). 2: 814-6. PMID 6137648 DOI: 10.1016/S0140-6736(83)90736-5 |
0.601 |
|
| 1982 |
Ecker JR, Hyman RW. Varicella zoster virus DNA exists as two isomers Proceedings of the National Academy of Sciences of the United States of America. 79: 156-160. PMID 6275385 DOI: 10.1073/Pnas.79.1.156 |
0.627 |
|
| 1981 |
Ecker JR, Hyman RW. Varicella-zoster virus vaccine DNA differs from the parental virus DNA Journal of Virology. 40: 314-318. PMID 6270384 DOI: 10.1128/Jvi.40.1.314-318.1981 |
0.611 |
|
| 1981 |
Ecker JR, Hyman RW. Variables that may influence the alkaline sedimentation pattern of herpes simplex virus DNA Archives of Virology. 68: 221-228. PMID 6268021 DOI: 10.1007/Bf01314575 |
0.634 |
|
| 1981 |
Ecker JR, Hyman RW. Analysis of interruptions in the phosphodiester backbone of herpes simplex virus DNA Virology. 110: 213-216. PMID 6259830 DOI: 10.1016/0042-6822(81)90024-6 |
0.641 |
|
| Show low-probability matches. |
