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Natalie M Clark - Publications

Affiliations: 
Iowa State University, Ames, IA, United States 
Area:
plant systems biology
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Watkins JM, Montes C, Clark NM, Song G, Oliveira CC, Mishra B, Brachova L, Seifert CM, Mitchell MS, Yang J, Braga Dos Reis PA, Urano D, Muktar MS, Walley JW, Jones AM. Phosphorylation dynamics in a flg22-induced, G-protein dependent network reveals the RGS1 phosphatase. Molecular & Cellular Proteomics : McP. 100705. PMID 38135118 DOI: 10.1016/j.mcpro.2023.100705  0.648
2023 Clark NM, Hurgobin B, Kelley DR, Lewsey MG, Walley JW. A Practical Guide to Inferring Multi-Omics Networks in Plant Systems. Methods in Molecular Biology (Clifton, N.J.). 2698: 233-257. PMID 37682479 DOI: 10.1007/978-1-0716-3354-0_15  0.679
2023 Olatunji D, Clark NM, Kelley DR. The Class VIII myosin ATM1 is required for root apical meristem function. Development (Cambridge, England). PMID 37306290 DOI: 10.1242/dev.201762  0.401
2023 Horvath DP, Doherty CJ, Desai J, Clark N, Anderson JV, Chao WS. Weed-induced changes in the maize root transcriptome reveal transcription factors and physiological processes impacted early in crop-weed interactions. Aob Plants. 15: plad013. PMID 37228420 DOI: 10.1093/aobpla/plad013  0.401
2023 Yin L, Zander M, Huang SC, Xie M, Song L, Guzm N JPS, Hann E, Shanbhag BK, Ng S, Jain S, Janssen BJ, Clark NM, Walley JW, Beddoe T, Bar-Joseph Z, et al. Transcription Factor Dynamics in Cross-Regulation of Plant Hormone Signaling Pathways. Biorxiv : the Preprint Server For Biology. PMID 36945593 DOI: 10.1101/2023.03.07.531630  0.711
2022 Wang P, Clark NM, Nolan TM, Song G, Whitham OG, Liao CY, Montes-Serey C, Bassham DC, Walley JW, Yin Y, Guo H. FERONIA functions through Target of Rapamycin (TOR) to negatively regulate autophagy. Frontiers in Plant Science. 13: 961096. PMID 36082288 DOI: 10.3389/fpls.2022.961096  0.668
2022 Muhammad D, Clark NM, Haque S, Williams C, Sozzani R, Long TA. POPEYE intercellular localization mediates cell-specific iron deficiency responses. Plant Physiology. PMID 35920794 DOI: 10.1093/plphys/kiac357  0.614
2022 Montes C, Wang P, Liao CY, Nolan TM, Song G, Clark NM, Elmore JM, Guo H, Bassham DC, Yin Y, Walley JW. Integration of multi-omics data reveals interplay between brassinosteroid and TORC signaling in Arabidopsis. The New Phytologist. PMID 35892179 DOI: 10.1111/nph.18404  0.718
2022 Wang P, Clark NM, Nolan TM, Song G, Bartz PM, Liao CY, Montes-Serey C, Katz E, Polko JK, Kieber JJ, Kliebenstein DJ, Bassham DC, Walley JW, Yin Y, Hongqing G. Integrated omics reveal novel functions and underlying mechanisms of the receptor kinase FERONIA in Arabidopsis thaliana. The Plant Cell. PMID 35435236 DOI: 10.1093/plcell/koac111  0.707
2022 Clark NM, Elmore JM, Walley JW. To the proteome and beyond: advances in single-cell omics profiling for plant systems. Plant Physiology. 188: 726-737. PMID 35235661 DOI: 10.1093/plphys/kiab429  0.652
2021 Van den Broeck L, Spurney RJ, Fisher AP, Schwartz M, Clark NM, Nguyen TT, Madison I, Gobble M, Long T, Sozzani R. A hybrid model connecting regulatory interactions with stem cell divisions in the root. Quantitative Plant Biology. 2: e2. PMID 37077208 DOI: 10.1017/qpb.2021.1  0.669
2021 Clark NM, Nolan TM, Wang P, Song G, Montes C, Valentine CT, Guo H, Sozzani R, Yin Y, Walley JW. Integrated omics networks reveal the temporal signaling events of brassinosteroid response in Arabidopsis. Nature Communications. 12: 5858. PMID 34615886 DOI: 10.1038/s41467-021-26165-3  0.764
2021 Wang P, Nolan TM, Clark NM, Jiang H, Montes-Serey C, Guo H, Bassham DC, Walley JW, Yin Y. The F-box E3 ubiquitin ligase BAF1 mediates the degradation of the brassinosteroid-activated transcription factor BES1 through selective autophagy in Arabidopsis. The Plant Cell. PMID 34436598 DOI: 10.1093/plcell/koab210  0.671
2021 Van den Broeck L, Spurney RJ, Fisher AP, Schwartz M, Clark NM, Nguyen TT, Madison I, Gobble M, Long T, Sozzani R. A hybrid model connecting regulatory interactions with stem cell divisions in the root Quantitative Plant Biology. 2. DOI: 10.1017/qpb.2021.1  0.338
2020 Crook AD, Willoughby AC, Hazak O, Okuda S, VanDerMolen KR, Soyars CL, Cattaneo P, Clark NM, Sozzani R, Hothorn M, Hardtke CS, Nimchuk ZL. BAM1/2 receptor kinase signaling drives CLE peptide-mediated formative cell divisions in roots. Proceedings of the National Academy of Sciences of the United States of America. PMID 33288706 DOI: 10.1073/pnas.2018565117  0.666
2020 Zander M, Lewsey MG, Clark NM, Yin L, Bartlett A, Saldierna Guzmán JP, Hann E, Langford AE, Jow B, Wise A, Nery JR, Chen H, Bar-Joseph Z, Walley JW, Solano R, et al. Publisher Correction: Integrated multi-omics framework of the plant response to jasmonic acid. Nature Plants. PMID 32694625 DOI: 10.1038/S41477-020-0743-Y  0.628
2020 Clark NM, Fisher AP, Berckmans B, Van den Broeck L, Nelson EC, Nguyen TT, Bustillo-Avendaño E, Zebell SG, Moreno-Risueno MA, Simon R, Gallagher KL, Sozzani R. Protein complex stoichiometry and expression dynamics of transcription factors modulate stem cell division. Proceedings of the National Academy of Sciences of the United States of America. PMID 32541020 DOI: 10.1073/Pnas.2002166117  0.668
2020 Zander M, Lewsey MG, Clark NM, Yin L, Bartlett A, Saldierna Guzmán JP, Hann E, Langford AE, Jow B, Wise A, Nery JR, Chen H, Bar-Joseph Z, Walley JW, Solano R, et al. Integrated multi-omics framework of the plant response to jasmonic acid. Nature Plants. 6: 290-302. PMID 32170290 DOI: 10.1038/S41477-020-0605-7  0.737
2020 Clark NM, Van den Broeck L, Guichard M, Stager A, Tanner HG, Blilou I, Grossmann G, Iyer-Pascuzzi AS, Maizel A, Sparks EE, Sozzani R. Novel Imaging Modalities Shedding Light on Plant Biology: Start Small and Grow Big. Annual Review of Plant Biology. PMID 32119794 DOI: 10.1146/Annurev-Arplant-050718-100038  0.643
2019 Clark NM, Buckner E, Fisher AP, Nelson EC, Nguyen TT, Simmons AR, de Luis Balaguer MA, Butler-Smith T, Sheldon PJ, Bergmann DC, Williams CM, Sozzani R. Stem-cell-ubiquitous genes spatiotemporally coordinate division through regulation of stem-cell-specific gene networks. Nature Communications. 10: 5574. PMID 31811116 DOI: 10.1038/S41467-019-13132-2  0.633
2019 Spurney RJ, Van den Broeck L, Clark NM, Fisher AP, de Luis Balaguer MA, Sozzani R. TuxNet: A simple interface to process RNA sequencing data and infer gene regulatory networks. The Plant Journal : For Cell and Molecular Biology. PMID 31571287 DOI: 10.1111/Tpj.14558  0.662
2019 Powers SK, Holehouse AS, Korasick DA, Schreiber KH, Clark NM, Jing H, Emenecker R, Han S, Tycksen E, Hwang I, Sozzani R, Jez JM, Pappu RV, Strader LC. Nucleo-cytoplasmic Partitioning of ARF Proteins Controls Auxin Responses in Arabidopsis thaliana. Molecular Cell. PMID 31421981 DOI: 10.1016/J.Molcel.2019.06.044  0.683
2019 Clark NM, Shen Z, Briggs SP, Walley JW, Kelley DR. Auxin Induces Widespread Proteome Remodeling in Arabidopsis Seedlings. Proteomics. e1900199. PMID 31381813 DOI: 10.1002/Pmic.201900199  0.762
2019 Clark NM, Shen Z, Briggs SP, Walley JW, Kelley DR. Front Cover: Auxin Induces Widespread Proteome Remodeling in Arabidopsis Seedlings Proteomics. 19: 1970151. DOI: 10.1002/Pmic.201970151  0.718
2018 Haque S, Ahmad JS, Clark NM, Williams CM, Sozzani R. Computational prediction of gene regulatory networks in plant growth and development. Current Opinion in Plant Biology. 47: 96-105. PMID 30445315 DOI: 10.1016/J.Pbi.2018.10.005  0.684
2018 Clark NM, Fisher AP, Sozzani R. Identifying Differentially Expressed Genes Using Fluorescence-Activated Cell Sorting (FACS) and RNA Sequencing from Low Input Samples. Methods in Molecular Biology (Clifton, N.J.). 1819: 139-151. PMID 30421402 DOI: 10.1007/978-1-4939-8618-7_6  0.613
2018 O'Lexy R, Kasai K, Clark N, Fujiwara T, Sozzani R, Gallagher KL. Exposure to heavy metal stress triggers changes in plasmodesmatal permeability via deposition and breakdown of callose. Journal of Experimental Botany. PMID 29901781 DOI: 10.1093/Jxb/Ery171  0.681
2018 Shibata M, Breuer C, Kawamura A, Clark NM, Rymen B, Braidwood L, Morohashi K, Busch W, Benfey PN, Sozzani R, Sugimoto K. GTL1 and DF1 regulate root hair growth through transcriptional repression of in . Development (Cambridge, England). 145. PMID 29439132 DOI: 10.1242/Dev.159707  0.728
2017 de Luis Balaguer MA, Fisher AP, Clark NM, Fernandez-Espinosa MG, Möller BK, Weijers D, Lohmann JU, Williams C, Lorenzo O, Sozzani R. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proceedings of the National Academy of Sciences of the United States of America. PMID 28827319 DOI: 10.1073/Pnas.1707566114  0.692
2017 Clark NM, Sozzani R. Measuring Protein Movement, Oligomerization State, and Protein-Protein Interaction in Arabidopsis Roots Using Scanning Fluorescence Correlation Spectroscopy (Scanning FCS). Methods in Molecular Biology (Clifton, N.J.). 1610: 251-266. PMID 28439868 DOI: 10.1007/978-1-4939-7003-2_16  0.621
2016 Clark NM, Hinde E, Winter CM, Fisher AP, Crosti G, Blilou I, Gratton E, Benfey PN, Sozzani R. Tracking transcription factor mobility and interaction in Arabidopsis roots with fluorescence correlation spectroscopy. Elife. 5. PMID 27288545 DOI: 10.7554/Elife.14770  0.696
2014 Clark NM, de Luis Balaguer MA, Sozzani R. Experimental data and computational modeling link auxin gradient and development in the Arabidopsis root. Frontiers in Plant Science. 5: 328. PMID 25071810 DOI: 10.3389/Fpls.2014.00328  0.671
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