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Mattia Pelizzola, Ph.D - Publications

Affiliations: 
2011- Istituto italiano di tecnologia (IIT) 
 2023- Associate Professor, Milano-Bicocca University, Italy 
Area:
computational biology, RNA modifications, epigenomics
Website:
https://www.btbs.unimib.it/it/mattia-pelizzola
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24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Leone M, Galeota E, Masseroli M, Pelizzola M. Identification, semantic annotation and comparison of combinations of functional elements in multiple biological conditions. Bioinformatics (Oxford, England). PMID 34864898 DOI: 10.1093/bioinformatics/btab815  0.341
2019 Lepesant JMJ, Iampietro C, Galeota E, Augé B, Aguirrenbengoa M, Mercé C, Chaubet C, Rocher V, Haenlin M, Waltzer L, Pelizzola M, Di Stefano L. A dual role of dLsd1 in oogenesis: regulating developmental genes and repressing transposons. Nucleic Acids Research. PMID 31799607 DOI: 10.1093/nar/gkz1142  0.384
2019 Tesi A, de Pretis S, Furlan M, Filipuzzi M, Morelli MJ, Andronache A, Doni M, Verrecchia A, Pelizzola M, Amati B, Sabò A. An early Myc-dependent transcriptional program orchestrates cell growth during B-cell activation. Embo Reports. e47987. PMID 31334602 DOI: 10.15252/embr.201947987  0.303
2018 Yizhar-Barnea O, Valensisi C, Jayavelu ND, Kishore K, Andrus C, Koffler-Brill T, Ushakov K, Perl K, Noy Y, Bhonker Y, Pelizzola M, Hawkins RD, Avraham KB. DNA methylation dynamics during embryonic development and postnatal maturation of the mouse auditory sensory epithelium. Scientific Reports. 8: 17348. PMID 30478432 DOI: 10.1038/S41598-018-35587-X  0.453
2018 Jantsch M, Quattrone A, O'Connell M, Helm M, Frye M, Macias-Gonzales M, Ohman M, Ameres S, Willems L, Fuks F, Oulas A, Vanacova S, Nielsen H, Bousquet-Antonelli C, Motorin Y, ... ... Pelizzola M, et al. Positioning Europe for the EPITRANSCRIPTOMICS challenge. Rna Biology. 1-8. PMID 29671387 DOI: 10.1080/15476286.2018.1460996  0.328
2018 Kishore K, Pelizzola M. Identification of Differentially Methylated Regions in the Genome of Arabidopsis thaliana. Methods in Molecular Biology (Clifton, N.J.). 1675: 61-69. PMID 29052185 DOI: 10.1007/978-1-4939-7318-7_4  0.548
2015 Kishore K, de Pretis S, Lister R, Morelli MJ, Bianchi V, Amati B, Ecker JR, Pelizzola M. methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data. Bmc Bioinformatics. 16: 313. PMID 26415965 DOI: 10.1186/S12859-015-0742-6  0.708
2014 de Pretis S, Pelizzola M. Computational and experimental methods to decipher the epigenetic code. Frontiers in Genetics. 5: 335. PMID 25295054 DOI: 10.3389/fgene.2014.00335  0.398
2014 Sabò A, Kress TR, Pelizzola M, de Pretis S, Gorski MM, Tesi A, Morelli MJ, Bora P, Doni M, Verrecchia A, Tonelli C, Fagà G, Bianchi V, Ronchi A, Low D, et al. Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis. Nature. 511: 488-92. PMID 25043028 DOI: 10.1038/nature13537  0.336
2014 Looney TJ, Zhang L, Chen CH, Lee JH, Chari S, Mao FF, Pelizzola M, Zhang L, Lister R, Baker SW, Fernandes CJ, Gaetz J, Foshay KM, Clift KL, Zhang Z, et al. Systematic mapping of occluded genes by cell fusion reveals prevalence and stability of cis-mediated silencing in somatic cells. Genome Research. 24: 267-80. PMID 24310002 DOI: 10.1101/Gr.143891.112  0.711
2013 Chang KN, Zhong S, Weirauch MT, Hon G, Pelizzola M, Li H, Huang SS, Schmitz RJ, Urich MA, Kuo D, Nery JR, Qiao H, Yang A, Jamali A, Chen H, et al. Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis. Elife. 2: e00675. PMID 23795294 DOI: 10.7554/Elife.00675  0.673
2013 Schmitz RJ, Schultz MD, Urich MA, Nery JR, Pelizzola M, Libiger O, Alix A, McCosh RB, Chen H, Schork NJ, Ecker JR. Patterns of population epigenomic diversity. Nature. 495: 193-8. PMID 23467092 DOI: 10.1038/Nature11968  0.76
2012 Dowen RH, Pelizzola M, Schmitz RJ, Lister R, Dowen JM, Nery JR, Dixon JE, Ecker JR. Widespread dynamic DNA methylation in response to biotic stress. Proceedings of the National Academy of Sciences of the United States of America. 109: E2183-91. PMID 22733782 DOI: 10.1073/Pnas.1209329109  0.705
2012 Hon GC, Hawkins RD, Caballero OL, Lo C, Lister R, Pelizzola M, Valsesia A, Ye Z, Kuan S, Edsall LE, Camargo AA, Stevenson BJ, Ecker JR, Bafna V, Strausberg RL, et al. Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer. Genome Research. 22: 246-58. PMID 22156296 DOI: 10.1101/Gr.125872.111  0.732
2011 Pelizzola M, Molinaro A. Methylated DNA immunoprecipitation genome-wide analysis Methods in Molecular Biology. 791: 113-123. PMID 21913075 DOI: 10.1007/978-1-61779-316-5_9  0.532
2011 Lister R, Pelizzola M, Kida YS, Hawkins RD, Nery JR, Hon G, Antosiewicz-Bourget J, O'Malley R, Castanon R, Klugman S, Downes M, Yu R, Stewart R, Ren B, Thomson JA, et al. Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells. Nature. 471: 68-73. PMID 21289626 DOI: 10.1038/Nature09798  0.773
2011 Liu Z, Hu Z, Pan X, Li M, Togun TA, Tuck D, Pelizzola M, Huang J, Ye X, Yin Y, Liu M, Li C, Chen Z, Wang F, Zhou L, et al. Germline competency of parthenogenetic embryonic stem cells from immature oocytes of adult mouse ovary. Human Molecular Genetics. 20: 1339-52. PMID 21239471 DOI: 10.1093/Hmg/Ddr016  0.306
2011 Pelizzola M, Ecker JR. The DNA methylome Febs Letters. 585: 1994-2000. PMID 21056564 DOI: 10.1016/J.Febslet.2010.10.061  0.68
2010 Harris RA, Wang T, Coarfa C, Nagarajan RP, Hong C, Downey SL, Johnson BE, Fouse SD, Delaney A, Zhao Y, Olshen A, Ballinger T, Zhou X, Forsberg KJ, Gu J, ... ... Pelizzola M, et al. Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications. Nature Biotechnology. 28: 1097-105. PMID 20852635 DOI: 10.1038/Nbt.1682  0.751
2010 Hawkins RD, Hon GC, Lee LK, Ngo Q, Lister R, Pelizzola M, Edsall LE, Kuan S, Luu Y, Klugman S, Antosiewicz-Bourget J, Ye Z, Espinoza C, Agarwahl S, Shen L, et al. Distinct epigenomic landscapes of pluripotent and lineage-committed human cells. Cell Stem Cell. 6: 479-91. PMID 20452322 DOI: 10.1016/J.Stem.2010.03.018  0.756
2009 Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, Tonti-Filippini J, Nery JR, Lee L, Ye Z, Ngo QM, Edsall L, Antosiewicz-Bourget J, Stewart R, Ruotti V, Millar AH, et al. Human DNA methylomes at base resolution show widespread epigenomic differences. Nature. 462: 315-22. PMID 19829295 DOI: 10.1038/Nature08514  0.769
2009 Koga Y, Pelizzola M, Cheng E, Krauthammer M, Sznol M, Ariyan S, Narayan D, Molinaro AM, Halaban R, Weissman SM. Genome-wide screen of promoter methylation identifies novel markers in melanoma. Genome Research. 19: 1462-70. PMID 19491193 DOI: 10.1101/Gr.091447.109  0.564
2009 Halaban R, Krauthammer M, Pelizzola M, Cheng E, Kovacs D, Sznol M, Ariyan S, Narayan D, Bacchiocchi A, Molinaro A, Kluger Y, Deng M, Tran N, Zhang W, Picardo M, et al. Integrative analysis of epigenetic modulation in melanoma cell response to decitabine: clinical implications. Plos One. 4: e4563. PMID 19234609 DOI: 10.1371/Journal.Pone.0004563  0.378
2008 Pelizzola M, Koga Y, Urban AE, Krauthammer M, Weissman S, Halaban R, Molinaro AM. MEDME: an experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment. Genome Research. 18: 1652-9. PMID 18765822 DOI: 10.1101/Gr.080721.108  0.521
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