| Year |
Citation |
Score |
| 2024 |
McDonald BR, Picard CL, Brabb IM, Savenkova MI, Schmitz RJ, Jacobsen SE, Duttke SH. Enhancers associated with unstable RNAs are rare in plants. Nature Plants. PMID 39080503 DOI: 10.1038/s41477-024-01741-9 |
0.341 |
|
| 2024 |
Zhang Y, Jang H, Luo Z, Dong Y, Xu Y, Kantamneni Y, Schmitz RJ. Dynamic evolution of the heterochromatin sensing histone demethylase IBM1. Plos Genetics. 20: e1011358. PMID 38991029 DOI: 10.1371/journal.pgen.1011358 |
0.461 |
|
| 2024 |
Kieft R, Yan H, Schmitz RJ, Sabatini R. Mono-allelic epigenetic regulation of bi-directional polycistronic transcription initiation by RNA Polymerase II in . Biorxiv : the Preprint Server For Biology. PMID 38948844 DOI: 10.1101/2024.06.21.600114 |
0.319 |
|
| 2024 |
Laspisa D, Illa-Berenguer E, Bang S, Schmitz RJ, Parrott W, Wallace J. Corrigendum: Mining the genome for insulator-like elements for genetic engineering. Frontiers in Plant Science. 15: 1412239. PMID 38736452 DOI: 10.3389/fpls.2024.1412239 |
0.536 |
|
| 2024 |
Zhang X, Marand AP, Yan H, Schmitz RJ. scifi-ATAC-seq: massive-scale single-cell chromatin accessibility sequencing using combinatorial fluidic indexing. Genome Biology. 25: 90. PMID 38589969 DOI: 10.1186/s13059-024-03235-5 |
0.801 |
|
| 2024 |
Shan S, Gitzendanner MA, Boatwright JL, Spoelhof JP, Ethridge CL, Ji L, Liu X, Soltis PS, Schmitz RJ, Soltis DE. Genome-wide DNA methylation dynamics following recent polyploidy in the allotetraploid Tragopogon miscellus (Asteraceae). The New Phytologist. PMID 38450804 DOI: 10.1111/nph.19655 |
0.678 |
|
| 2024 |
Mendieta JP, Tu X, Jiang D, Yan H, Zhang X, Marand AP, Zhong S, Schmitz RJ. Investigating the -Regulatory Basis of C and C Photosynthesis in Grasses at Single-Cell Resolution. Biorxiv : the Preprint Server For Biology. PMID 38405933 DOI: 10.1101/2024.01.05.574340 |
0.72 |
|
| 2024 |
Goretzki SC, van der Linden M, Itzek A, Hühne T, Adelmann RO, Ala Eldin F, Albarouni M, Becker JC, Berghäuser MA, Boesing T, Boeswald M, Brasche M, Brevis Nuñez F, Camara R, Deibert C, ... Schmitz R, et al. Outbreak of severe community-acquired bacterial infections among children in North Rhine-Westphalia (Germany), October to December 2022. Infection. PMID 38366304 DOI: 10.1007/s15010-023-02165-x |
0.441 |
|
| 2024 |
Yan H, Mendieta JP, Zhang X, Marand AP, Liang Y, Luo Z, Roulé T, Wagner D, Tu X, Wang Y, Zhong S, Wessler SR, Schmitz RJ. Evolution of cell-type-specific accessible chromatin regions and the -regulatory elements that drive lineage-specific innovation. Biorxiv : the Preprint Server For Biology. PMID 38260561 DOI: 10.1101/2024.01.08.574753 |
0.819 |
|
| 2024 |
Harkess A, Bewick AJ, Lu Z, Fourounjian P, Michael TP, Schmitz RJ, Meyers BC. Unusual predominance of maintenance DNA methylation in Spirodela polyrhiza. G3 (Bethesda, Md.). PMID 38190722 DOI: 10.1093/g3journal/jkae004 |
0.855 |
|
| 2023 |
Laspisa D, Llla-Berenguer E, Bang S, Schmitz RJ, Parrott W, Wallace J. Mining the genome for insulator-like elements for genetic engineering. Frontiers in Plant Science. 14: 1279231. PMID 38023853 DOI: 10.3389/fpls.2023.1279231 |
0.61 |
|
| 2023 |
Buell CR, Dardick C, Parrott W, Schmitz RJ, Shih PM, Tsai CJ, Urbanowicz B. Engineering custom morpho- and chemotypes of for sustainable production of biofuels, bioproducts, and biomaterials. Frontiers in Plant Science. 14: 1288826. PMID 37965014 DOI: 10.3389/fpls.2023.1288826 |
0.605 |
|
| 2023 |
Kieft R, Zhang Y, Yan H, Schmitz RJ, Sabatini R. Protein Phosphatase PP1 Regulation of Pol II Phosphorylation is Linked to Transcription Termination and Allelic Exclusion of VSG Genes and TERRA in Trypanosomes. Biorxiv : the Preprint Server For Biology. PMID 37905150 DOI: 10.1101/2023.10.21.563358 |
0.739 |
|
| 2023 |
Mcdonald BR, Picard C, Brabb IM, Savenkova MI, Schmitz RJ, Jacobsen SE, Duttke SH. Enhancers associated with unstable RNAs are rare in plants. Biorxiv : the Preprint Server For Biology. PMID 37808859 DOI: 10.1101/2023.09.25.559415 |
0.622 |
|
| 2023 |
Zhang X, Marand AP, Yan H, Schmitz RJ. Massive-scale single-cell chromatin accessibility sequencing using combinatorial fluidic indexing. Biorxiv : the Preprint Server For Biology. PMID 37786710 DOI: 10.1101/2023.09.17.558155 |
0.801 |
|
| 2023 |
Zhou R, Jenkins JW, Zeng Y, Shu S, Jang H, Harding SA, Williams M, Plott C, Barry KW, Koriabine M, Amirebrahimi M, Talag J, Rajasekar S, Grimwood J, Schmitz RJ, et al. Haplotype-resolved genome assembly of Populus tremula × P. alba reveals aspen-specific megabase satellite DNA. The Plant Journal : For Cell and Molecular Biology. PMID 37675609 DOI: 10.1111/tpj.16454 |
0.597 |
|
| 2023 |
Minow MAA, Marand AP, Schmitz RJ. Leveraging Single-Cell Populations to Uncover the Genetic Basis of Complex Traits. Annual Review of Genetics. PMID 37562412 DOI: 10.1146/annurev-genet-022123-110824 |
0.785 |
|
| 2023 |
Cunningham CB, Shelby EA, McKinney EC, Schmitz RJ, Moore AJ, Moore PJ. The role of Dmnt1 during spermatogenesis of the insect Oncopeltus fasciatus. Epigenetics & Chromatin. 16: 28. PMID 37393253 DOI: 10.1186/s13072-023-00496-5 |
0.629 |
|
| 2023 |
Mendieta JP, Sangra A, Yan H, Minow MAA, Schmitz RJ. Exploring Plant Cis-Regulatory Elements at Single-Cell Resolution: Overcoming Biological and Computational Challenges to Advance Plant Research. The Plant Journal : For Cell and Molecular Biology. PMID 37309871 DOI: 10.1111/tpj.16351 |
0.76 |
|
| 2023 |
Kieft R, Zhang Y, Yan H, Schmitz RJ, Sabatini R. Knockout of protein phosphatase 1 in Leishmania major reveals its role during RNA polymerase II transcription termination. Nucleic Acids Research. PMID 37194692 DOI: 10.1093/nar/gkad394 |
0.731 |
|
| 2023 |
Ivasyk I, Olivos-Cisneros L, Valdés-Rodríguez S, Droual M, Jang H, Schmitz RJ, Kronauer DJC. DNMT1 mutant ants develop normally but have disrupted oogenesis. Nature Communications. 14: 2201. PMID 37072475 DOI: 10.1038/s41467-023-37945-4 |
0.639 |
|
| 2023 |
Murray A, Vollmers C, Schmitz RJ. Smar2C2: A Simple and Efficient Protocol for the Identification of Transcription Start Sites. Current Protocols. 3: e705. PMID 36947693 DOI: 10.1002/cpz1.705 |
0.596 |
|
| 2022 |
Zee A, Deng DZQ, Adams M, Schimke KD, Corbett-Detig R, Russell SL, Zhang X, Schmitz RJ, Vollmers C. Sequencing Illumina libraries at high accuracy on the ONT MinION using R2C2. Genome Research. PMID 36351772 DOI: 10.1101/gr.277031.122 |
0.52 |
|
| 2022 |
Schmitz RJ, Mittelsten Scheid O. Editorial overview: COPB issue 2022 on "epigenetics and gene regulation". Current Opinion in Plant Biology. 70: 102305. PMID 36209559 DOI: 10.1016/j.pbi.2022.102305 |
0.599 |
|
| 2022 |
Hung LH, Straw E, Reddy S, Schmitz R, Colburn Z, Yeung KY. Cloud-enabled Biodepot workflow builder integrates image processing using Fiji with reproducible data analysis using Jupyter notebooks. Scientific Reports. 12: 14920. PMID 36056115 DOI: 10.1038/s41598-022-19173-w |
0.47 |
|
| 2022 |
Marchant DB, Chen G, Cai S, Chen F, Schafran P, Jenkins J, Shu S, Plott C, Webber J, Lovell JT, He G, Sandor L, Williams M, Rajasekar S, Healey A, ... Schmitz RJ, et al. Dynamic genome evolution in a model fern. Nature Plants. PMID 36050461 DOI: 10.1038/s41477-022-01226-7 |
0.633 |
|
| 2022 |
Murray A, Mendieta JP, Vollmers C, Schmitz RJ. Simple and Accurate Transcriptional Start Site Identification Using Smar2C2 and Examination of Conserved Promoter Features. The Plant Journal : For Cell and Molecular Biology. PMID 36030508 DOI: 10.1111/tpj.15957 |
0.608 |
|
| 2022 |
Tu X, Marand AP, Schmitz RJ, Zhong S. A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells. Plant Communications. 100308. PMID 35605196 DOI: 10.1016/j.xplc.2022.100308 |
0.807 |
|
| 2022 |
Patrick Bewg W, Harding SA, Engle NL, Vaidya BN, Zhou R, Reeves J, Horn TW, Joshee N, Jenkins JW, Shu S, Barry KW, Yoshinaga Y, Grimwood J, Schmitz RJ, Schmutz J, et al. Multiplex knockout of trichome-regulating MYB duplicates in hybrid poplar using a single gRNA. Plant Physiology. PMID 35298644 DOI: 10.1093/plphys/kiac128 |
0.568 |
|
| 2022 |
Hazarika RR, Serra M, Zhang Z, Zhang Y, Schmitz RJ, Johannes F. Molecular properties of epimutation hotspots. Nature Plants. PMID 35087209 DOI: 10.1038/s41477-021-01086-7 |
0.662 |
|
| 2021 |
Minnoye L, Marinov GK, Krausgruber T, Pan L, Marand AP, Secchia S, Greenleaf WJ, Furlong EEM, Zhao K, Schmitz RJ, Bock C, Aerts S. Chromatin accessibility profiling methods. Nature Reviews. Methods Primers. 1. PMID 38410680 DOI: 10.1038/s43586-020-00008-9 |
0.831 |
|
| 2021 |
Schmitz RJ, Grotewold E, Stam M. Cis-regulatory sequences in plants: their importance, discovery, and future challenges. The Plant Cell. PMID 34918159 DOI: 10.1093/plcell/koab281 |
0.641 |
|
| 2021 |
Noshay JM, Liang Z, Zhou P, Crisp PA, Marand AP, Hirsch CN, Schmitz RJ, Springer NM. Stability of DNA methylation and chromatin accessibility in structurally diverse maize genomes. G3 (Bethesda, Md.). 11. PMID 34849810 DOI: 10.1093/g3journal/jkab190 |
0.828 |
|
| 2021 |
Zhang Y, Jang H, Xiao R, Kakoulidou I, Piecyk RS, Johannes F, Schmitz RJ. Heterochromatin is a quantitative trait associated with spontaneous epiallele formation. Nature Communications. 12: 6958. PMID 34845222 DOI: 10.1038/s41467-021-27320-6 |
0.697 |
|
| 2021 |
Schmitz RJ, Marand AP, Zhang X, Mosher RA, Turck F, Chen X, Axtell MJ, Zhong X, Brady SM, Megraw M, Meyers BC. Quality control and evaluation of plant epigenomics data. The Plant Cell. PMID 34648025 DOI: 10.1093/plcell/koab255 |
0.814 |
|
| 2021 |
Mendieta JP, Marand AP, Ricci WA, Zhang X, Schmitz RJ. Leveraging histone modifications to improve genome annotations. G3 (Bethesda, Md.). 11. PMID 34568920 DOI: 10.1093/g3journal/jkab263 |
0.821 |
|
| 2021 |
Jordan WT, Currie S, Schmitz RJ. Multiplex genome editing in using Mb3Cas12a. Plant Direct. 5: e344. PMID 34514290 DOI: 10.1002/pld3.344 |
0.604 |
|
| 2021 |
Marand AP, Zhang X, Nelson J, Braga Dos Reis PA, Schmitz RJ. Profiling single-cell chromatin accessibility in plants. Star Protocols. 2: 100737. PMID 34430912 DOI: 10.1016/j.xpro.2021.100737 |
0.792 |
|
| 2021 |
Marand AP, Schmitz RJ. Single-cell analysis of cis-regulatory elements. Current Opinion in Plant Biology. 65: 102094. PMID 34390932 DOI: 10.1016/j.pbi.2021.102094 |
0.79 |
|
| 2021 |
Hufford MB, Seetharam AS, Woodhouse MR, Chougule KM, Ou S, Liu J, Ricci WA, Guo T, Olson A, Qiu Y, Della Coletta R, Tittes S, Hudson AI, Marand AP, Wei S, ... Schmitz RJ, et al. De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes. Science (New York, N.Y.). 373: 655-662. PMID 34353948 DOI: 10.1126/science.abg5289 |
0.815 |
|
| 2021 |
Ferraro AR, Ameri AJ, Lu Z, Kamei M, Schmitz RJ, Lewis ZA. Chromatin accessibility profiling in Neurospora crassa reveals molecular features associated with accessible and inaccessible chromatin. Bmc Genomics. 22: 459. PMID 34147068 DOI: 10.1186/s12864-021-07774-0 |
0.779 |
|
| 2021 |
Yao N, Schmitz RJ, Johannes F. Epimutations define a fast-ticking molecular clock in plants. Trends in Genetics : Tig. PMID 34016450 DOI: 10.1016/j.tig.2021.04.010 |
0.622 |
|
| 2021 |
Marand AP, Chen Z, Gallavotti A, Schmitz RJ. A cis-regulatory atlas in maize at single-cell resolution. Cell. PMID 33964211 DOI: 10.1016/j.cell.2021.04.014 |
0.807 |
|
| 2021 |
Washington JT, Cavender KR, Amukamara AU, McKinney EC, Schmitz RJ, Moore PJ. The essential role of Dnmt1 in in the large milkweed bug . Elife. 10. PMID 33843583 DOI: 10.7554/eLife.62202 |
0.659 |
|
| 2021 |
Noshay JM, Marand AP, Anderson SN, Zhou P, Mejia Guerra MK, Lu Z, O'Connor CH, Crisp PA, Hirsch CN, Schmitz RJ, Springer NM. Assessing the regulatory potential of transposable elements using chromatin accessibility profiles of maize transposons. Genetics. 217: 1-13. PMID 33683350 DOI: 10.1093/genetics/iyaa003 |
0.835 |
|
| 2021 |
Yocca AE, Lu Z, Schmitz RJ, Freeling M, Edger PP. Evolution of conserved noncoding sequences in Arabidopsis thaliana. Molecular Biology and Evolution. PMID 33565589 DOI: 10.1093/molbev/msab042 |
0.793 |
|
| 2021 |
Kamei M, Ameri AJ, Ferraro AR, Bar-Peled Y, Zhao F, Ethridge CL, Lail K, Amirebrahimi M, Lipzen A, Ng V, Grigoriev IV, Schmitz RJ, Liu Y, Lewis ZA. IMITATION SWITCH is required for normal chromatin structure and gene repression in PRC2 target domains. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33468665 DOI: 10.1073/pnas.2010003118 |
0.623 |
|
| 2020 |
Provart NJ, Brady SM, Parry G, Schmitz RJ, Queitsch C, Bonetta D, Waese J, Schneeberger K, Loraine AE. Anno genominis XX: 20 years of Arabidopsis genomics. The Plant Cell. PMID 33793861 DOI: 10.1093/plcell/koaa038 |
0.612 |
|
| 2020 |
Xu X, Crow M, Rice BR, Li F, Harris B, Liu L, Demesa-Arevalo E, Lu Z, Wang L, Fox N, Wang X, Drenkow J, Luo A, Char SN, Yang B, ... Schmitz RJ, et al. Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery. Developmental Cell. PMID 33400914 DOI: 10.1016/j.devcel.2020.12.015 |
0.778 |
|
| 2020 |
Wang T, Kwon SH, Peng X, Urdy S, Lu Z, Schmitz RJ, Dalton S, Mostov KE, Zhao S. A Qualitative Change in the Transcriptome Occurs after the First Cell Cycle and Coincides with Lumen Establishment during MDCKII Cystogenesis. Iscience. 23: 101629. PMID 33089114 DOI: 10.1016/j.isci.2020.101629 |
0.731 |
|
| 2020 |
Hofmeister BT, Denkena J, Colomé-Tatché M, Shahryary Y, Hazarika R, Grimwood J, Mamidi S, Jenkins J, Grabowski PP, Sreedasyam A, Shu S, Barry K, Lail K, Adam C, Lipzen A, ... Schmitz RJ, et al. A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa. Genome Biology. 21: 259. PMID 33023654 DOI: 10.1186/s13059-020-02162-5 |
0.574 |
|
| 2020 |
Shahryary Y, Symeonidi A, Hazarika RR, Denkena J, Mubeen T, Hofmeister B, van Gurp T, Colomé-Tatché M, Verhoeven KJF, Tuskan G, Schmitz RJ, Johannes F. AlphaBeta: computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants. Genome Biology. 21: 260. PMID 33023650 DOI: 10.1186/s13059-020-02161-6 |
0.633 |
|
| 2020 |
Crisp PA, Marand AP, Noshay JM, Zhou P, Lu Z, Schmitz RJ, Springer NM. Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes. Proceedings of the National Academy of Sciences of the United States of America. PMID 32879011 DOI: 10.1073/Pnas.2010250117 |
0.847 |
|
| 2020 |
Grover CE, Pan M, Yuan D, Arick MA, Hu G, Brase L, Stelly DM, Lu Z, Schmitz RJ, Peterson DG, Wendel JF, Udall JA. The Genome as a Resource for Cotton Breeding and Evolution. G3 (Bethesda, Md.). PMID 32122962 DOI: 10.1534/G3.120.401050 |
0.782 |
|
| 2020 |
Kieft R, Zhang Y, Marand AP, Moran JD, Bridger R, Wells L, Schmitz RJ, Sabatini R. Identification of a novel base J binding protein complex involved in RNA polymerase II transcription termination in trypanosomes. Plos Genetics. 16: e1008390. PMID 32084124 DOI: 10.1371/Journal.Pgen.1008390 |
0.792 |
|
| 2020 |
Zhang Y, Wendte JM, Ji L, Schmitz RJ. Natural variation in DNA methylation homeostasis and the emergence of epialleles. Proceedings of the National Academy of Sciences of the United States of America. PMID 32071208 DOI: 10.1073/Pnas.1918172117 |
0.707 |
|
| 2020 |
Ricci WA, Lu Z, Ji L, Marand AP, Ethridge CL, Murphy NG, Noshay JM, Galli M, Mejía-Guerra MK, Colomé-Tatché M, Johannes F, Rowley MJ, Corces VG, Zhai J, Scanlon MJ, ... Schmitz RJ, et al. Author Correction: Widespread long-range cis-regulatory elements in the maize genome. Nature Plants. PMID 32029893 DOI: 10.1038/S41477-020-0600-Z |
0.788 |
|
| 2020 |
Amukamara AU, Washington JT, Sanchez Z, McKinney EC, Moore AJ, Schmitz RJ, Moore PJ. More Than DNA Methylation: Does Pleiotropy Drive the Complex Pattern of Evolution of Dnmt1? Frontiers in Ecology and Evolution. 8. DOI: 10.3389/Fevo.2020.00004 |
0.504 |
|
| 2019 |
Ricci WA, Lu Z, Ji L, Marand AP, Ethridge CL, Murphy NG, Noshay JM, Galli M, Mejía-Guerra MK, Colomé-Tatché M, Johannes F, Rowley MJ, Corces VG, Zhai J, Scanlon MJ, ... Schmitz RJ, et al. Widespread long-range cis-regulatory elements in the maize genome. Nature Plants. PMID 31740773 DOI: 10.1038/S41477-019-0547-0 |
0.822 |
|
| 2019 |
Lu Z, Marand AP, Ricci WA, Ethridge CL, Zhang X, Schmitz RJ. The prevalence, evolution and chromatin signatures of plant regulatory elements. Nature Plants. PMID 31740772 DOI: 10.1038/S41477-019-0548-Z |
0.842 |
|
| 2019 |
Dekker JD, Baracho GV, Zhu Z, Ippolito GC, Schmitz RJ, Rickert RC, Tucker HO. Loss of the FOXP1 Transcription Factor Leads to Deregulation of B Lymphocyte Development and Function at Multiple Stages. Immunohorizons. 3: 447-462. PMID 31591252 DOI: 10.4049/immunohorizons.1800079 |
0.528 |
|
| 2019 |
Drinnenberg IA, Berger F, Elsässer SJ, Andersen PR, Ausió J, Bickmore WA, Blackwell AR, Erwin DH, Gahan JM, Gaut BS, Harvey ZH, Henikoff S, Kao JY, Kurdistani SK, Lemos B, ... Schmitz RJ, et al. EvoChromo: towards a synthesis of chromatin biology and evolution. Development (Cambridge, England). 146. PMID 31558570 DOI: 10.1242/Dev.178962 |
0.59 |
|
| 2019 |
Ding Y, Murphy KM, Poretsky E, Mafu S, Yang B, Char SN, Christensen SA, Saldivar E, Wu M, Wang Q, Ji L, Schmitz RJ, Kremling KA, Buckler ES, Shen Z, et al. Multiple genes recruited from hormone pathways partition maize diterpenoid defences. Nature Plants. PMID 31527844 DOI: 10.1038/S41477-019-0509-6 |
0.605 |
|
| 2019 |
Noshay JM, Anderson SN, Zhou P, Ji L, Ricci W, Lu Z, Stitzer MC, Crisp PA, Hirsch CN, Zhang X, Schmitz RJ, Springer NM. Monitoring the interplay between transposable element families and DNA methylation in maize. Plos Genetics. 15: e1008291. PMID 31498837 DOI: 10.1371/Journal.Pgen.1008291 |
0.819 |
|
| 2019 |
Ji L, Mathioni S, Johnson S, Tucker D, Bewick AJ, Kim KD, Daron J, Slotkin RK, Jackson SA, Parrott WA, Meyers BC, Schmitz R. Genome-wide reinforcement of DNA methylation occurs during somatic embryogenesis in soybean. The Plant Cell. PMID 31439802 DOI: 10.1105/Tpc.19.00255 |
0.837 |
|
| 2019 |
Zander M, Willige BC, He Y, Nguyen TA, Langford AE, Nehring R, Howell E, McGrath R, Bartlett A, Castanon R, Nery JR, Chen H, Zhang Z, Jupe F, Stepanova A, Schmitz RJ, et al. Epigenetic silencing of a multifunctional plant stress regulator. Elife. 8. PMID 31418686 DOI: 10.7554/Elife.47835 |
0.806 |
|
| 2019 |
Schmitz RJ, Lewis ZA, Goll MG. DNA Methylation: Shared and Divergent Features across Eukaryotes. Trends in Genetics : Tig. PMID 31399242 DOI: 10.1016/J.Tig.2019.07.007 |
0.684 |
|
| 2019 |
Wendte JM, Zhang Y, Ji L, Shi X, Hazarika RR, Shahryary Y, Johannes F, Schmitz RJ. Epimutations are associated with CHROMOMETHYLASE 3-induced de novo DNA methylation. Elife. 8. PMID 31356150 DOI: 10.7554/Elife.47891 |
0.847 |
|
| 2019 |
Riley LA, Ji L, Schmitz RJ, Westpheling J, Guss AM. Rational development of transformation in Clostridium thermocellum ATCC 27405 via complete methylome analysis and evasion of native restriction-modification systems. Journal of Industrial Microbiology & Biotechnology. PMID 31342224 DOI: 10.1007/S10295-019-02218-X |
0.633 |
|
| 2019 |
Argueso CT, Assmann SM, Birnbaum KD, Chen S, Dinneny JR, Doherty CJ, Eveland AL, Friesner J, Greenlee VR, Law JA, Marshall-Colón A, Mason GA, O'Lexy R, Peck SC, Schmitz RJ, et al. Directions for research and training in plant omics: Big Questions and Big Data. Plant Direct. 3: e00133. PMID 31245771 DOI: 10.1002/pld3.133 |
0.61 |
|
| 2019 |
Bewick AJ, Zhang Y, Wendte JM, Zhang X, Schmitz RJ. Evolutionary and Experimental Loss of Gene Body Methylation and Its Consequence to Gene Expression. G3 (Bethesda, Md.). PMID 31147389 DOI: 10.1534/G3.119.400365 |
0.806 |
|
| 2019 |
Bewick AJ, Hofmeister BT, Powers RA, Mondo SJ, Grigoriev IV, James TY, Stajich JE, Schmitz RJ. Diversity of cytosine methylation across the fungal tree of life. Nature Ecology & Evolution. PMID 30778188 DOI: 10.1038/S41559-019-0810-9 |
0.849 |
|
| 2019 |
Bewick AJ, Sanchez Z, Mckinney EC, Moore AJ, Moore PJ, Schmitz RJ. Dnmt1 is essential for egg production and embryo viability in the large milkweed bug, Oncopeltus fasciatus. Epigenetics & Chromatin. 12: 6. PMID 30616649 DOI: 10.1186/S13072-018-0246-5 |
0.808 |
|
| 2019 |
Wendte JM, Zhang Y, Ji L, Shi X, Hazarika RR, Shahryary Y, Johannes F, Schmitz RJ. Author response: Epimutations are associated with CHROMOMETHYLASE 3-induced de novo DNA methylation Elife. DOI: 10.7554/Elife.47891.037 |
0.412 |
|
| 2019 |
Zander M, Willige BC, He Y, Nguyen TA, Langford AE, Nehring R, Howell E, McGrath R, Bartlett A, Castanon R, Nery JR, Chen H, Zhang Z, Jupe F, Stepanova A, ... Schmitz RJ, et al. Author response: Epigenetic silencing of a multifunctional plant stress regulator Elife. DOI: 10.7554/Elife.47835.027 |
0.786 |
|
| 2018 |
Rajshekar S, Yao J, Arnold PK, Payne SG, Zhang Y, Bowman TV, Schmitz RJ, Edwards JR, Goll M. Pericentromeric hypomethylation elicits an interferon response in an animal model of ICF syndrome. Elife. 7. PMID 30484769 DOI: 10.7554/Elife.39658 |
0.579 |
|
| 2018 |
Cunningham CB, Ji L, McKinney EC, Benowitz KM, Schmitz RJ, Moore AJ. Changes of gene expression but not cytosine methylation are associated with male parental care reflecting behavioural state, social context, and individual flexibility. The Journal of Experimental Biology. PMID 30446546 DOI: 10.1242/Jeb.188649 |
0.591 |
|
| 2018 |
Galli M, Khakhar A, Lu Z, Chen Z, Sen S, Joshi T, Nemhauser JL, Schmitz RJ, Gallavotti A. The DNA binding landscape of the maize AUXIN RESPONSE FACTOR family. Nature Communications. 9: 4526. PMID 30375394 DOI: 10.1038/S41467-018-06977-6 |
0.81 |
|
| 2018 |
Fallon TR, Lower SE, Chang CH, Bessho-Uehara M, Martin GJ, Bewick AJ, Behringer M, Debat HJ, Wong I, Day JC, Suvorov A, Silva CJ, Stanger-Hall KF, Hall DW, Schmitz RJ, et al. Firefly genomes illuminate parallel origins of bioluminescence in beetles. Elife. 7. PMID 30324905 DOI: 10.7554/Elife.36495 |
0.802 |
|
| 2018 |
Johannes F, Schmitz RJ. Spontaneous epimutations in plants. The New Phytologist. PMID 30216456 DOI: 10.1111/Nph.15434 |
0.699 |
|
| 2018 |
Volden R, Palmer T, Byrne A, Cole C, Schmitz RJ, Green RE, Vollmers C. Improving nanopore read accuracy with the R2C2 method enables the sequencing of highly multiplexed full-length single-cell cDNA. Proceedings of the National Academy of Sciences of the United States of America. PMID 30201725 DOI: 10.1073/Pnas.1806447115 |
0.579 |
|
| 2018 |
Lee BH, Weber ZT, Zourelidou M, Hofmeister BT, Schmitz R, Schwechheimer C, Dobritsa AA. Arabidopsis protein kinase D6PKL3 is involved in formation of distinct plasma-membrane aperture domains on the pollen surface. The Plant Cell. PMID 30150313 DOI: 10.1105/Tpc.18.00442 |
0.566 |
|
| 2018 |
Lu Z, Ricci WA, Schmitz RJ, Zhang X. Identification of cis-regulatory elements by chromatin structure. Current Opinion in Plant Biology. 42: 90-94. PMID 29704803 DOI: 10.1016/J.Pbi.2018.04.004 |
0.819 |
|
| 2018 |
Hofmeister BT, Schmitz RJ. Enhanced JBrowse plugins for epigenomics data visualization. Bmc Bioinformatics. 19: 159. PMID 29699480 DOI: 10.1186/S12859-018-2160-Z |
0.594 |
|
| 2018 |
Ji L, Jordan WT, Shi X, Hu L, He C, Schmitz RJ. TET-mediated epimutagenesis of the Arabidopsis thaliana methylome. Nature Communications. 9: 895. PMID 29497035 DOI: 10.1038/S41467-018-03289-7 |
0.853 |
|
| 2018 |
Finnegan EJ, Ford B, Wallace X, Pettolino F, Griffin PT, Schmitz RJ, Zhang P, Barrero JM, Hayden MJ, Boden SA, Cavanagh CA, Swain SM, Trevaskis B. Zebularine treatment is associated with deletion of FT-B1 leading to an increase in spikelet number in bread wheat. Plant, Cell & Environment. PMID 29430678 DOI: 10.1111/Pce.13164 |
0.637 |
|
| 2018 |
Fallon TR, Lower SE, Chang C, Bessho-Uehara M, Martin GJ, Bewick AJ, Behringer M, Debat HJ, Wong I, Day JC, Suvorov A, Silva CJ, Stanger-Hall KF, Hall DW, Schmitz RJ, et al. Author response: Firefly genomes illuminate parallel origins of bioluminescence in beetles Elife. DOI: 10.7554/Elife.36495.176 |
0.748 |
|
| 2017 |
Wendte JM, Schmitz RJ. Specifications of targeting heterochromatin modifications in plants. Molecular Plant. PMID 29032247 DOI: 10.1016/J.Molp.2017.10.002 |
0.667 |
|
| 2017 |
Stathopoulou A, Chhetri JB, Ambrose JC, Estève PO, Ji L, Erdjument-Bromage H, Zhang G, Neubert TA, Pradhan S, Herrero J, Schmitz RJ, Ooi SKT. A novel requirement for DROSHA in maintenance of mammalian CG methylation. Nucleic Acids Research. 45: 9810. PMID 28934508 DOI: 10.1093/nar/gkx736 |
0.596 |
|
| 2017 |
Stathopoulou A, Chhetri JB, Ambrose JC, Estève PO, Ji L, Erdjument-Bromage H, Zhang G, Neubert TA, Pradhan S, Herrero J, Schmitz RJ, Ooi SKT. A novel requirement for DROSHA in maintenance of mammalian CG methylation. Nucleic Acids Research. 45: 9398-9412. PMID 28934503 DOI: 10.1093/Nar/Gkx695 |
0.692 |
|
| 2017 |
Edger PP, Smith RD, McKain MR, Cooley AM, Vallejo-Marin M, Yuan YW, Bewick AJ, Ji L, Platts AE, Bowman MJ, Childs K, Washburn JD, Schmitz R, Smith GD, Pires JC, et al. Subgenome dominance in an interspecific hybrid, synthetic allopolyploid, and a 140-year- old naturally established neo-allopolyploid monkeyflower. The Plant Cell. PMID 28814644 DOI: 10.1105/Tpc.17.00010 |
0.821 |
|
| 2017 |
Hofmeister BT, Lee K, Rohr NA, Hall DW, Schmitz RJ. Stable inheritance of DNA methylation allows creation of epigenotype maps and the study of epiallele inheritance patterns in the absence of genetic variation. Genome Biology. 18: 155. PMID 28814343 DOI: 10.1186/S13059-017-1288-X |
0.661 |
|
| 2017 |
Springer NM, Schmitz RJ. Exploiting induced and natural epigenetic variation for crop improvement. Nature Reviews. Genetics. PMID 28669983 DOI: 10.1038/Nrg.2017.45 |
0.632 |
|
| 2017 |
Susek K, Braszewska-Zalewska A, Bewick AJ, Hasterok R, Schmitz RJ, Naganowska B. Epigenomic diversification within the genus Lupinus. Plos One. 12: e0179821. PMID 28640886 DOI: 10.1371/Journal.Pone.0179821 |
0.821 |
|
| 2017 |
Mondo SJ, Dannebaum RO, Kuo RC, Louie KB, Bewick AJ, LaButti K, Haridas S, Kuo A, Salamov A, Ahrendt SR, Lau R, Bowen BP, Lipzen A, Sullivan W, Andreopoulos BB, ... Schmitz RJ, et al. Widespread adenine N6-methylation of active genes in fungi. Nature Genetics. PMID 28481340 DOI: 10.1038/Ng.3859 |
0.844 |
|
| 2017 |
Bewick AJ, Niederhuth CE, Ji L, Rohr NA, Griffin PT, Leebens-Mack J, Schmitz RJ. The evolution of CHROMOMETHYLASES and gene body DNA methylation in plants. Genome Biology. 18: 65. PMID 28457232 DOI: 10.1186/S13059-017-1195-1 |
0.832 |
|
| 2017 |
Bewick AJ, Schmitz RJ. Gene body DNA methylation in plants. Current Opinion in Plant Biology. 36: 103-110. PMID 28258985 DOI: 10.1016/J.Pbi.2016.12.007 |
0.847 |
|
| 2017 |
Hossain MS, Kawakatsu T, Kim KD, Ning Z, Nguyen CT, Khan SM, Batek JM, Joshi T, Schmutz J, Grimwood J, Schmitz RJ, Xu D, Jackson SA, Ecker JR, Stacey G. Divergent cytosine DNA methylation patterns in single-cell, soybean root hairs. The New Phytologist. PMID 28106918 DOI: 10.1111/Nph.14421 |
0.807 |
|
| 2016 |
Bewick AJ, Vogel KJ, Moore AJ, Schmitz RJ. Evolution of DNA methylation across insects. Molecular Biology and Evolution. PMID 28025279 DOI: 10.1093/Molbev/Msw264 |
0.829 |
|
| 2016 |
Lu Z, Hofmeister BT, Vollmers C, DuBois RM, Schmitz RJ. Combining ATAC-seq with nuclei sorting for discovery of cis-regulatory regions in plant genomes. Nucleic Acids Research. PMID 27903897 DOI: 10.1093/Nar/Gkw1179 |
0.828 |
|
| 2016 |
Niederhuth CE, Bewick AJ, Ji L, Alabady MS, Kim KD, Li Q, Rohr NA, Rambani A, Burke JM, Udall JA, Egesi C, Schmutz J, Grimwood J, Jackson SA, Springer NM, Schmitz RJ, et al. Widespread natural variation of DNA methylation within angiosperms. Genome Biology. 17: 194. PMID 27671052 DOI: 10.1186/S13059-016-1059-0 |
0.837 |
|
| 2016 |
Niederhuth CE, Schmitz RJ. Putting DNA methylation in context: from genomes to gene expression in plants. Biochimica Et Biophysica Acta. PMID 27590871 DOI: 10.1016/J.Bbagrm.2016.08.009 |
0.858 |
|
| 2016 |
Walley JW, Sartor RC, Shen Z, Schmitz RJ, Wu KJ, Urich MA, Nery JR, Smith LG, Schnable JC, Ecker JR, Briggs SP. Integration of omic networks in a developmental atlas of maize. Science (New York, N.Y.). 353: 814-8. PMID 27540173 DOI: 10.1126/Science.Aag1125 |
0.655 |
|
| 2016 |
Panda K, Ji L, Neumann DA, Daron J, Schmitz RJ, Slotkin RK. Full-length autonomous transposable elements are preferentially targeted by expression-dependent forms of RNA-directed DNA methylation. Genome Biology. 17: 170. PMID 27506905 DOI: 10.1186/S13059-016-1032-Y |
0.612 |
|
| 2016 |
Jordan WT, Schmitz RJ. Erratum to: The shocking consequences of hybrid epigenomes. Genome Biology. 17: 165. PMID 27473586 DOI: 10.1186/S13059-016-1031-Z |
0.53 |
|
| 2016 |
Bewick AJ, Ji L, Niederhuth CE, Willing EM, Hofmeister BT, Shi X, Wang L, Lu Z, Rohr NA, Hartwig B, Kiefer C, Deal RB, Schmutz J, Grimwood J, Stroud H, ... Schmitz RJ, et al. On the origin and evolutionary consequences of gene body DNA methylation. Proceedings of the National Academy of Sciences of the United States of America. 113: 9111-6. PMID 27457936 DOI: 10.1073/Pnas.1604666113 |
0.841 |
|
| 2016 |
Kawakatsu T, Huang SC, Jupe F, Sasaki E, Schmitz RJ, Urich MA, Castanon R, Nery JR, Barragan C, He Y, Chen H, Dubin M, Lee CR, Wang C, Bemm F, et al. Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions. Cell. 166: 492-505. PMID 27419873 DOI: 10.1016/J.Cell.2016.06.044 |
0.846 |
|
| 2016 |
Griffin PT, Niederhuth CE, Schmitz RJ. A Comparative Analysis of 5-Azacytidine and Zebularine induced DNA Demethylation. G3 (Bethesda, Md.). PMID 27402357 DOI: 10.1534/G3.116.030262 |
0.842 |
|
| 2016 |
Kawakatsu T, Stuart T, Valdes M, Breakfield N, Schmitz RJ, Nery JR, Urich MA, Han X, Lister R, Benfey PN, Ecker JR. Unique cell-type-specific patterns of DNA methylation in the root meristem. Nature Plants. 2: 16058. PMID 27243651 DOI: 10.1038/Nplants.2016.58 |
0.851 |
|
| 2016 |
Seymour M, Ji L, Santos AM, Kamei M, Sasaki T, Basenko EY, Schmitz RJ, Zhang X, Lewis ZA. Histone H1 Limits DNA Methylation in Neurospora crassa. G3 (Bethesda, Md.). PMID 27172195 DOI: 10.1534/G3.116.028324 |
0.662 |
|
| 2016 |
Yu P, Ji L, Lee KJ, Yu M, He C, Ambati S, McKinney EC, Jackson C, Baile CA, Schmitz RJ, Meagher RB. Subsets of Visceral Adipose Tissue Nuclei with Distinct Levels of 5-Hydroxymethylcytosine. Plos One. 11: e0154949. PMID 27171244 DOI: 10.1371/Journal.Pone.0154949 |
0.624 |
|
| 2016 |
Hohos NM, Lee K, Ji L, Yu M, Kandasamy MM, Phillips BG, Baile CA, He C, Schmitz RJ, Meagher RB. DNA cytosine hydroxymethylation levels are distinct among non-overlapping classes of peripheral blood leukocytes. Journal of Immunological Methods. PMID 27164004 DOI: 10.1016/J.Jim.2016.05.003 |
0.567 |
|
| 2016 |
Jordan WT, Schmitz RJ. The shocking consequences of hybrid epigenomes. Genome Biology. 17: 85. PMID 27150453 DOI: 10.1186/S13059-016-0967-3 |
0.533 |
|
| 2016 |
Reynolds DL, Hofmeister BT, Cliffe L, Siegel TN, Anderson BA, Beverley SM, Schmitz RJ, Sabatini R. Base J represses genes at the end of polycistronic gene clusters in Leishmania major by promoting RNAP II termination. Molecular Microbiology. PMID 27125778 DOI: 10.1111/Mmi.13408 |
0.614 |
|
| 2016 |
Bertioli DJ, Cannon SB, Froenicke L, Huang G, Farmer AD, Cannon EK, Liu X, Gao D, Clevenger J, Dash S, Ren L, Moretzsohn MC, Shirasawa K, Huang W, Vidigal B, ... Schmitz RJ, et al. The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics. PMID 26901068 DOI: 10.1038/Ng.3517 |
0.811 |
|
| 2016 |
Reynolds D, Hofmeister BT, Cliffe L, Alabady M, Siegel TN, Schmitz RJ, Sabatini R. Histone H3 Variant Regulates RNA Polymerase II Transcription Termination and Dual Strand Transcription of siRNA Loci in Trypanosoma brucei. Plos Genetics. 12: e1005758. PMID 26796527 DOI: 10.1371/Journal.Pgen.1005758 |
0.622 |
|
| 2016 |
Basenko EY, Kamei M, Ji L, Schmitz RJ, Lewis ZA. The LSH/DDM1 Homolog MUS-30 Is Required for Genome Stability, but Not for DNA Methylation in Neurospora crassa. Plos Genetics. 12: e1005790. PMID 26771905 DOI: 10.1371/Journal.Pgen.1005790 |
0.651 |
|
| 2015 |
Vlachogiannis G, Niederhuth CE, Tuna S, Stathopoulou A, Viiri K, de Rooij DG, Jenner RG, Schmitz RJ, Ooi SKT. The Dnmt3L ADD Domain Controls Cytosine Methylation Establishment during Spermatogenesis. Cell Reports. 11: 990. PMID 28843284 DOI: 10.1016/j.celrep.2015.04.041 |
0.774 |
|
| 2015 |
Bewick AJ, Hofmeister BT, Lee K, Zhang X, Hall DW, Schmitz RJ. FASTmC: A Suite of Predictive Models for Non-Reference-Based Estimations of DNA Methylation. G3 (Bethesda, Md.). PMID 26681520 DOI: 10.1534/G3.115.025668 |
0.825 |
|
| 2015 |
Basenko EY, Sasaki T, Ji L, Prybol CJ, Burckhardt RM, Schmitz RJ, Lewis ZA. Genome-wide redistribution of H3K27me3 is linked to genotoxic stress and defective growth. Proceedings of the National Academy of Sciences of the United States of America. 112: E6339-E6348. PMID 26578794 DOI: 10.1073/Pnas.1511377112 |
0.644 |
|
| 2015 |
Li Q, Gent JI, Zynda G, Song J, Makarevitch I, Hirsch CD, Hirsch CN, Dawe RK, Madzima TF, McGinnis KM, Lisch D, Schmitz RJ, Vaughn MW, Springer NM. RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome. Proceedings of the National Academy of Sciences of the United States of America. PMID 26553984 DOI: 10.1073/Pnas.1514680112 |
0.714 |
|
| 2015 |
Cunningham CB, Ji L, Wiberg RA, Shelton J, McKinney EC, Parker DJ, Meagher RB, Benowitz KM, Roy-Zokan EM, Ritchie MG, Brown SJ, Schmitz RJ, Moore AJ. The genome and methylome of a beetle with complex social behavior, Nicrophorus vespilloides (Coleoptera: Silphidae). Genome Biology and Evolution. PMID 26454014 DOI: 10.1093/Gbe/Evv194 |
0.652 |
|
| 2015 |
Dinh TT, Gao L, Liu X, Li D, Li S, Zhao Y, O'Leary M, Le B, Schmitz RJ, Manavella PA, Li S, Weigel D, Pontes O, Ecker JR, Chen X. Correction: DNA Topoisomerase 1α Promotes Transcriptional Silencing of Transposable Elements through DNA Methylation and Histone Lysine 9 Dimethylation in Arabidopsis. Plos Genetics. 11: e1005452. PMID 26379054 DOI: 10.1371/journal.pgen.1005452 |
0.711 |
|
| 2015 |
Christensen SA, Huffaker A, Kaplan F, Sims J, Ziemann S, Doehlemann G, Ji L, Schmitz RJ, Kolomiets MV, Alborn HT, Mori N, Jander G, Ni X, Sartor RC, Byers S, et al. Maize death acids, 9-lipoxygenase-derived cyclopente(a)nones, display activity as cytotoxic phytoalexins and transcriptional mediators. Proceedings of the National Academy of Sciences of the United States of America. 112: 11407-12. PMID 26305953 DOI: 10.1073/Pnas.1511131112 |
0.59 |
|
| 2015 |
Nagel DH, Doherty CJ, Pruneda-Paz JL, Schmitz RJ, Ecker JR, Kay SA. Genome-wide identification of CCA1 targets uncovers an expanded clock network in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 112: E4802-10. PMID 26261339 DOI: 10.1073/Pnas.1513609112 |
0.716 |
|
| 2015 |
Yu M, Ji L, Neumann DA, Chung DH, Groom J, Westpheling J, He C, Schmitz RJ. Base-resolution detection of N4-methylcytosine in genomic DNA using 4mC-Tet-assisted-bisulfite- sequencing. Nucleic Acids Research. PMID 26184871 DOI: 10.1093/Nar/Gkv738 |
0.65 |
|
| 2015 |
Rancour DM, Hatfield RD, Marita JM, Rohr NA, Schmitz RJ. Cell wall composition and digestibility alterations in Brachypodium distachyon achieved through reduced expression of the UDP-arabinopyranose mutase. Frontiers in Plant Science. 6: 446. PMID 26136761 DOI: 10.3389/Fpls.2015.00446 |
0.617 |
|
| 2015 |
van der Graaf A, Wardenaar R, Neumann DA, Taudt A, Shaw RG, Jansen RC, Schmitz RJ, Colomé-Tatché M, Johannes F. Rate, spectrum, and evolutionary dynamics of spontaneous epimutations. Proceedings of the National Academy of Sciences of the United States of America. 112: 6676-81. PMID 25964364 DOI: 10.1073/Pnas.1424254112 |
0.666 |
|
| 2015 |
Bewick AJ, Schmitz RJ. Epigenetics in the wild. Elife. 4: e07808. PMID 25939361 DOI: 10.7554/Elife.07808 |
0.825 |
|
| 2015 |
Jacobs TB, LaFayette PR, Schmitz RJ, Parrott WA. Targeted genome modifications in soybean with CRISPR/Cas9. Bmc Biotechnology. 15: 16. PMID 25879861 DOI: 10.1186/S12896-015-0131-2 |
0.645 |
|
| 2015 |
Urich MA, Nery JR, Lister R, Schmitz RJ, Ecker JR. MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing. Nature Protocols. 10: 475-83. PMID 25692984 DOI: 10.1038/Nprot.2014.114 |
0.814 |
|
| 2015 |
Vlachogiannis G, Niederhuth CE, Tuna S, Stathopoulou A, Viiri K, de Rooij DG, Jenner RG, Schmitz RJ, Ooi SK. The Dnmt3L ADD Domain Controls Cytosine Methylation Establishment during Spermatogenesis. Cell Reports. PMID 25683717 DOI: 10.1016/J.Celrep.2015.01.021 |
0.842 |
|
| 2015 |
Ji L, Neumann DA, Schmitz RJ. Crop Epigenomics: Identifying, Unlocking, and Harnessing Cryptic Variation in Crop Genomes. Molecular Plant. 8: 860-870. PMID 25638564 DOI: 10.1016/J.Molp.2015.01.021 |
0.728 |
|
| 2014 |
Ji L, Sasaki T, Sun X, Ma P, Lewis ZA, Schmitz RJ. Methylated DNA is over-represented in whole-genome bisulfite sequencing data. Frontiers in Genetics. 5: 341. PMID 25374580 DOI: 10.3389/Fgene.2014.00341 |
0.678 |
|
| 2014 |
Lane AK, Niederhuth CE, Ji L, Schmitz RJ. pENCODE: a plant encyclopedia of DNA elements. Annual Review of Genetics. 48: 49-70. PMID 25149370 DOI: 10.1146/Annurev-Genet-120213-092443 |
0.801 |
|
| 2014 |
West PT, Li Q, Ji L, Eichten SR, Song J, Vaughn MW, Schmitz RJ, Springer NM. Genomic distribution of H3K9me2 and DNA methylation in a maize genome. Plos One. 9: e105267. PMID 25122127 DOI: 10.1371/Journal.Pone.0105267 |
0.716 |
|
| 2014 |
Dinh TT, Gao L, Liu X, Li D, Li S, Zhao Y, O'Leary M, Le B, Schmitz RJ, Manavella P, Weigel D, Pontes O, Ecker JR, Chen X. DNA Topoisomerase 1α Promotes Transcriptional Silencing of Transposable Elements through DNA Methylation and Histone Lysine 9 Dimethylation in Arabidopsis Plos Genetics. 10. PMID 24992598 DOI: 10.1371/Journal.Pgen.1004446 |
0.755 |
|
| 2014 |
Eichten SR, Schmitz RJ, Springer NM. Epigenetics: Beyond Chromatin Modifications and Complex Genetic Regulation. Plant Physiology. 165: 933-947. PMID 24872382 DOI: 10.1104/Pp.113.234211 |
0.689 |
|
| 2014 |
Wang Y, Gu X, Yuan W, Schmitz RJ, He Y. Photoperiodic control of the floral transition through a distinct polycomb repressive complex. Developmental Cell. 28: 727-36. PMID 24613395 DOI: 10.1016/J.Devcel.2014.01.029 |
0.801 |
|
| 2014 |
Schmitz RJ. Genetics. The secret garden--epigenetic alleles underlie complex traits. Science (New York, N.Y.). 343: 1082-3. PMID 24604184 DOI: 10.1126/Science.1251864 |
0.668 |
|
| 2014 |
Niederhuth CE, Schmitz RJ. Covering your bases: inheritance of DNA methylation in plant genomes. Molecular Plant. 7: 472-80. PMID 24270503 DOI: 10.1093/Mp/Sst165 |
0.848 |
|
| 2014 |
Valdés-López O, Khan SM, Schmitz RJ, Cui S, Qiu J, Joshi T, Xu D, Diers B, Ecker JR, Stacey G. Genotypic variation of gene expression during the soybean innate immunity response Plant Genetic Resources: Characterisation and Utilisation. 12: S27-S30. DOI: 10.1017/S1479262114000197 |
0.567 |
|
| 2014 |
Schmitz RJ, Zhang X. Decoding the Epigenomes of Herbaceous Plants Advances in Botanical Research. 69: 247-277. DOI: 10.1016/B978-0-12-417163-3.00010-X |
0.524 |
|
| 2013 |
Zurovac J, Moreno L, Crosson J, Brown R, Schmitz R. Using multifactorial experiments for comparative effectiveness research in physician practices with electronic health record. Egems (Washington, Dc). 1: 1037. PMID 25848579 DOI: 10.13063/2327-9214.1037 |
0.466 |
|
| 2013 |
Hua Z, Pool JE, Schmitz RJ, Schultz MD, Shiu SH, Ecker JR, Vierstra RD. Epigenomic programming contributes to the genomic drift evolution of the F-Box protein superfamily in Arabidopsis Proceedings of the National Academy of Sciences of the United States of America. 110: 16927-16932. PMID 24082131 DOI: 10.1073/Pnas.1316009110 |
0.781 |
|
| 2013 |
Chang KN, Zhong S, Weirauch MT, Hon G, Pelizzola M, Li H, Huang SS, Schmitz RJ, Urich MA, Kuo D, Nery JR, Qiao H, Yang A, Jamali A, Chen H, et al. Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis. Elife. 2: e00675. PMID 23795294 DOI: 10.7554/Elife.00675 |
0.803 |
|
| 2013 |
Schmitz RJ, He Y, Valdés-López O, Khan SM, Joshi T, Urich MA, Nery JR, Diers B, Xu D, Stacey G, Ecker JR. Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population. Genome Research. 23: 1663-74. PMID 23739894 DOI: 10.1101/Gr.152538.112 |
0.804 |
|
| 2013 |
Qiao H, Shen Z, Huang SS, Schmitz RJ, Urich MA, Briggs SP, Ecker JR. Response to perspective: "separation anxiety: an analysis of ethylene-induced cleavage of EIN2". Plant Signaling & Behavior. 8. PMID 23733051 DOI: 10.4161/Psb.25037 |
0.715 |
|
| 2013 |
Schmitz RJ, Schultz MD, Urich MA, Nery JR, Pelizzola M, Libiger O, Alix A, McCosh RB, Chen H, Schork NJ, Ecker JR. Patterns of population epigenomic diversity. Nature. 495: 193-8. PMID 23467092 DOI: 10.1038/Nature11968 |
0.827 |
|
| 2013 |
Woodson JD, Perez-Ruiz JM, Schmitz RJ, Ecker JR, Chory J. Sigma factor-mediated plastid retrograde signals control nuclear gene expression. The Plant Journal : For Cell and Molecular Biology. 73: 1-13. PMID 22950756 DOI: 10.1111/Tpj.12011 |
0.695 |
|
| 2013 |
Chang KN, Zhong S, Weirauch MT, Hon G, Pelizzola M, Li H, Huang SC, Schmitz RJ, Urich MA, Kuo D, Nery JR, Qiao H, Yang A, Jamali A, Chen H, et al. Author response: Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis Elife. DOI: 10.7554/Elife.00675.022 |
0.778 |
|
| 2013 |
Chung W, Schmitz RJ, Biorac T, Ye D, Dudas M, Meredith GD, Adams CC, Ecker JR, Zhang MQ. Constructing Hepitypes: Phasing Local Genotype and DNA Methylation Journal of Neuroscience and Neuroengineering. 2: 335-346. DOI: 10.1166/Jnsne.2013.1067 |
0.646 |
|
| 2012 |
Vollmers C, Schmitz RJ, Nathanson J, Yeo G, Ecker JR, Panda S. Circadian oscillations of protein-coding and regulatory RNAs in a highly dynamic mammalian liver epigenome Cell Metabolism. 16: 833-845. PMID 23217262 DOI: 10.1016/J.Cmet.2012.11.004 |
0.71 |
|
| 2012 |
Schultz MD, Schmitz RJ, Ecker JR. 'Leveling' the playing field for analyses of single-base resolution DNA methylomes Trends in Genetics. 28: 583-585. PMID 23131467 DOI: 10.1016/J.Tig.2012.10.012 |
0.731 |
|
| 2012 |
Qiao H, Shen Z, Huang SS, Schmitz RJ, Urich MA, Briggs SP, Ecker JR. Processing and subcellular trafficking of ER-tethered EIN2 control response to ethylene gas. Science (New York, N.Y.). 338: 390-3. PMID 22936567 DOI: 10.1126/Science.1225974 |
0.73 |
|
| 2012 |
Dowen RH, Pelizzola M, Schmitz RJ, Lister R, Dowen JM, Nery JR, Dixon JE, Ecker JR. Widespread dynamic DNA methylation in response to biotic stress. Proceedings of the National Academy of Sciences of the United States of America. 109: E2183-91. PMID 22733782 DOI: 10.1073/Pnas.1209329109 |
0.842 |
|
| 2012 |
Johnson DBF, Wang C, Xu J, Schultz MD, Schmitz RJ, Ecker JR, Wang L. Release factor one is nonessential in escherichia coli Acs Chemical Biology. 7: 1337-1344. PMID 22662873 DOI: 10.1021/Cb300229Q |
0.633 |
|
| 2012 |
Kurihara Y, Schmitz RJ, Nery JR, Schultz MD, Okubo-Kurihara E, Morosawa T, Tanaka M, Toyoda T, Seki M, Ecker JR. Surveillance of 3' Noncoding Transcripts Requires FIERY1 and XRN3 in Arabidopsis. G3 (Bethesda, Md.). 2: 487-98. PMID 22540040 DOI: 10.1534/G3.111.001362 |
0.786 |
|
| 2012 |
Li L, Ljung K, Breton G, Schmitz RJ, Pruneda-Paz J, Cowing-Zitron C, Cole BJ, Ivans LJ, Pedmale UV, Jung HS, Ecker JR, Kay SA, Chory J. Linking photoreceptor excitation to changes in plant architecture. Genes & Development. 26: 785-90. PMID 22508725 DOI: 10.1101/Gad.187849.112 |
0.686 |
|
| 2012 |
Schmitz RJ, Ecker JR. Epigenetic and epigenomic variation in Arabidopsis thaliana Trends in Plant Science. 17: 149-154. PMID 22342533 DOI: 10.1016/J.Tplants.2012.01.001 |
0.734 |
|
| 2011 |
Hotto AM, Schmitz RJ, Fei Z, Ecker JR, Stern DB. Unexpected Diversity of Chloroplast Noncoding RNAs as Revealed by Deep Sequencing of the Arabidopsis Transcriptome. G3 (Bethesda, Md.). 1: 559-70. PMID 22384367 DOI: 10.1534/G3.111.000752 |
0.656 |
|
| 2011 |
Johnson DB, Xu J, Shen Z, Takimoto JK, Schultz MD, Schmitz RJ, Xiang Z, Ecker JR, Briggs SP, Wang L. RF1 knockout allows ribosomal incorporation of unnatural amino acids at multiple sites. Nature Chemical Biology. 7: 779-86. PMID 21926996 DOI: 10.1038/Nchembio.657 |
0.63 |
|
| 2011 |
Schmitz RJ, Schultz MD, Lewsey MG, O'Malley RC, Urich MA, Libiger O, Schork NJ, Ecker JR. Transgenerational epigenetic instability is a source of novel methylation variants. Science (New York, N.Y.). 334: 369-73. PMID 21921155 DOI: 10.1126/Science.1212959 |
0.837 |
|
| 2011 |
Schmitz RJ, Zhang X. High-throughput approaches for plant epigenomic studies. Current Opinion in Plant Biology. 14: 130-6. PMID 21470901 DOI: 10.1016/J.Pbi.2011.03.010 |
0.704 |
|
| 2011 |
Farrona S, Hurtado L, March-Díaz R, Schmitz RJ, Florencio FJ, Turck F, Amasino RM, Reyes JC. Brahma is required for proper expression of the floral repressor FLC in Arabidopsis. Plos One. 6: e17997. PMID 21445315 DOI: 10.1371/Journal.Pone.0017997 |
0.703 |
|
| 2010 |
Belkhadir Y, Durbak A, Wierzba M, Schmitz RJ, Aguirre A, Michel R, Rowe S, Fujioka S, Tax FE. Intragenic suppression of a trafficking-defective brassinosteroid receptor mutant in Arabidopsis. Genetics. 185: 1283-96. PMID 20457881 DOI: 10.1534/Genetics.109.111898 |
0.557 |
|
| 2009 |
Schmitz RJ, Tamada Y, Doyle MR, Zhang X, Amasino RM. Histone H2B deubiquitination is required for transcriptional activation of FLOWERING LOCUS C and for proper control of flowering in Arabidopsis. Plant Physiology. 149: 1196-204. PMID 19091875 DOI: 10.1104/Pp.108.131508 |
0.749 |
|
| 2008 |
Schmitz RJ, Sung S, Amasino RM. Histone arginine methylation is required for vernalization-induced epigenetic silencing of FLC in winter-annual Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 105: 411-6. PMID 18178621 DOI: 10.1073/Pnas.0710423104 |
0.759 |
|
| 2007 |
Sung S, Schmitz RJ, Amasino R. The Role of VIN3-LIKE Genes in Environmentally Induced Epigenetic Regulation of Flowering. Plant Signaling & Behavior. 2: 127-8. PMID 19704758 DOI: 10.4161/Psb.2.2.3971 |
0.734 |
|
| 2007 |
Schmitz RJ, Hong L, Fitzpatrick KE, Amasino RM. DICER-LIKE 1 and DICER-LIKE 3 redundantly act to promote flowering via repression of FLOWERING LOCUS C in Arabidopsis thaliana. Genetics. 176: 1359-62. PMID 17579240 DOI: 10.1534/Genetics.107.070649 |
0.705 |
|
| 2007 |
Schmitz RJ, Amasino RM. Vernalization: a model for investigating epigenetics and eukaryotic gene regulation in plants. Biochimica Et Biophysica Acta. 1769: 269-75. PMID 17383745 DOI: 10.1016/J.Bbaexp.2007.02.003 |
0.749 |
|
| 2007 |
Reeves PA, He Y, Schmitz RJ, Amasino RM, Panella LW, Richards CM. Evolutionary conservation of the FLOWERING LOCUS C-mediated vernalization response: evidence from the sugar beet (Beta vulgaris). Genetics. 176: 295-307. PMID 17179080 DOI: 10.1534/Genetics.106.069336 |
0.792 |
|
| 2006 |
Sung S, Schmitz RJ, Amasino RM. A PHD finger protein involved in both the vernalization and photoperiod pathways in Arabidopsis. Genes & Development. 20: 3244-8. PMID 17114575 DOI: 10.1101/Gad.1493306 |
0.736 |
|
| 2006 |
Hanna S, Rastogi A, Weston AP, Totta F, Schmitz R, Mathur S, McGregor D, Cherian R, Sharma P. Detection of Barrett's esophagus after endoscopic healing of erosive esophagitis. The American Journal of Gastroenterology. 101: 1416-20. PMID 16863541 DOI: 10.1111/j.1572-0241.2006.00631.x |
0.446 |
|
| 2006 |
Angus DC, Shorr AF, White A, Dremsizov TT, Schmitz RJ, Kelley MA. Critical care delivery in the United States: distribution of services and compliance with Leapfrog recommendations. Critical Care Medicine. 34: 1016-24. PMID 16505703 DOI: 10.1097/01.CCM.0000206105.05626.15 |
0.453 |
|
| 2005 |
Frakt AB, Pizer SD, Schmitz RJ, Mattke S. Voluntary partial capitation: the Community Nursing Organization Medicare demonstration. Health Care Financing Review. 26: 21-37. PMID 17288066 |
0.461 |
|
| 2005 |
Schmitz RJ, Hong L, Michaels S, Amasino RM. FRIGIDA-ESSENTIAL 1 interacts genetically with FRIGIDA and FRIGIDA-LIKE 1 to promote the winter-annual habit of Arabidopsis thaliana Development. 132: 5471-5478. PMID 16291783 DOI: 10.1242/Dev.02170 |
0.806 |
|
| 2002 |
Choe S, Schmitz RJ, Fujioka S, Takatsuto S, Lee MO, Yoshida S, Feldmann KA, Tax FE. Arabidopsis brassinosteroid-insensitive dwarf12 mutants are semidominant and defective in a glycogen synthase kinase 3beta-like kinase. Plant Physiology. 130: 1506-15. PMID 12428015 DOI: 10.1104/Pp.010496 |
0.54 |
|
| 2002 |
Zhao J, Peng P, Schmitz RJ, Decker AD, Tax FE, Li J. Two putative BIN2 substrates are nuclear components of brassinosteroid signaling. Plant Physiology. 130: 1221-9. PMID 12427989 DOI: 10.1104/Pp.102.010918 |
0.564 |
|
| 1998 |
Schmitz RJ. Comparative ultrastructure of the cellular components of the unconstricted notochord in the sturgeon and the lungfish. Journal of Morphology. 236: 75-104. PMID 29852676 DOI: 10.1002/(SICI)1097-4687(199805)236:2<75::AID-JMOR1>3.0.CO;2-N |
0.494 |
|
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