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Josh Paul Clevenger - Publications

Affiliations: 
2016 University of Georgia, Athens, Athens, GA, United States 
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Talbot SC, Vining KJ, Snelling JW, Clevenger J, Mehlenbacher SA. A haplotype-resolved chromosome-level assembly and annotation of European hazelnut (C. avellana cv. Jefferson) provides insight into mechanisms of eastern filbert blight resistance. G3 (Bethesda, Md.). PMID 38325326 DOI: 10.1093/g3journal/jkae021  0.437
2023 Conde S, Rami JF, Okello DK, Sambou A, Muitia A, Oteng-Frimpong R, Makweti L, Sako D, Faye I, Chintu J, Coulibaly AM, Miningou A, Asibuo JY, Konate M, Banla EM, ... ... Clevenger J, et al. The Groundnut Improvement Network for Africa (GINA) Germplasm collection: a unique genetic resource for breeding and gene discovery. G3 (Bethesda, Md.). PMID 37875136 DOI: 10.1093/g3journal/jkad244  0.614
2023 Li X, Zhang S, Lowey D, Hissam C, Clevenger J, Perera S, Jia Y, Caicedo AL. A derived weedy rice × ancestral cultivar cross identifies evolutionarily relevant weediness QTLs. Molecular Ecology. PMID 37861465 DOI: 10.1111/mec.17172  0.372
2023 Roy J, Soler-Garzón A, Miklas PN, Lee R, Clevenger J, Myers Z, Korani W, McClean PE. Integrating de novo QTL-seq and linkage mapping to identify quantitative trait loci conditioning physiological resistance and avoidance to white mold disease in dry bean. The Plant Genome. e20380. PMID 37602515 DOI: 10.1002/tpg2.20380  0.347
2023 Oladzad A, Roy J, Mamidi S, Miklas PN, Lee R, Clevenger J, Myers Z, Korani W, McClean PE. Linked candidate genes of different functions for white mold resistance in common bean ( L) are identified by multiple QTL mapping approaches. Frontiers in Plant Science. 14: 1233285. PMID 37583595 DOI: 10.3389/fpls.2023.1233285  0.348
2023 Achola E, Wasswa P, Fonceka D, Clevenger JP, Bajaj P, Ozias-Akins P, Rami JF, Deom CM, Hoisington DA, Edema R, Odeny DA, Okello DK. Genome-wide association studies reveal novel loci for resistance to groundnut rosette disease in the African core groundnut collection. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 136: 35. PMID 36897398 DOI: 10.1007/s00122-023-04259-4  0.638
2021 Bertioli DJ, Clevenger J, Godoy IJ, Stalker HT, Wood S, Santos JF, Ballén-Taborda C, Abernathy B, Azevedo V, Campbell J, Chavarro C, Chu Y, Farmer AD, Fonceka D, Gao D, et al. Legacy genetics of in the peanut crop shows the profound benefits of international seed exchange. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34518223 DOI: 10.1073/pnas.2104899118  0.557
2021 Wang X, Yang X, Feng Y, Dang P, Wang W, Graze R, Clevenger JP, Chu Y, Ozias-Akins P, Holbrook C, Chen C. Transcriptome Profile Reveals Drought-Induced Genes Preferentially Expressed in Response to Water Deficit in Cultivated Peanut ( L.). Frontiers in Plant Science. 12: 645291. PMID 33995444 DOI: 10.3389/fpls.2021.645291  0.554
2020 Fountain JC, Clevenger JP, Nadon B, Youngblood RC, Korani W, Chang PK, Starr D, Wang H, Isett B, Johnston HR, Wiggins R, Agarwal G, Chu Y, Kemerait RC, Pandey MK, et al. Two New Reference Genomes Reveal a Large Insertion Potentially Contributing To Isolate Stress Tolerance and Aflatoxin Production. G3 (Bethesda, Md.). PMID 32817124 DOI: 10.1534/G3.120.401405  0.572
2020 Peng Z, Zhao Z, Clevenger JP, Chu Y, Paudel D, Ozias-Akins P, Wang J. Comparison of SNP Calling Pipelines and NGS Platforms to Predict the Genomic Regions Harboring Candidate Genes for Nodulation in Cultivated Peanut. Frontiers in Genetics. 11: 222. PMID 32265983 DOI: 10.3389/Fgene.2020.00222  0.675
2020 Zhang H, Chu Y, Dang P, Tang Y, Jiang T, Clevenger JP, Ozias-Akins P, Holbrook C, Wang ML, Campbell H, Hagan A, Chen C. Identification of QTLs for resistance to leaf spots in cultivated peanut (Arachis hypogaea L.) through GWAS analysis. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 32144466 DOI: 10.1007/S00122-020-03576-2  0.646
2019 Agarwal G, Clevenger J, Kale SM, Wang H, Pandey MK, Choudhary D, Yuan M, Wang X, Culbreath AK, Holbrook CC, Liu X, Varshney RK, Guo B. A recombination bin-map identified a major QTL for resistance to Tomato Spotted Wilt Virus in peanut (Arachis hypogaea). Scientific Reports. 9: 18246. PMID 31796847 DOI: 10.1038/S41598-019-54747-1  0.418
2019 Otyama PI, Wilkey A, Kulkarni R, Assefa T, Chu Y, Clevenger J, O'Connor DJ, Wright GC, Dezern SW, MacDonald GE, Anglin NL, Cannon EKS, Ozias-Akins P, Cannon SB. Evaluation of linkage disequilibrium, population structure, and genetic diversity in the U.S. peanut mini core collection. Bmc Genomics. 20: 481. PMID 31185892 DOI: 10.1186/S12864-019-5824-9  0.628
2019 Bertioli DJ, Jenkins J, Clevenger J, Dudchenko O, Gao D, Seijo G, Leal-Bertioli SCM, Ren L, Farmer AD, Pandey MK, Samoluk SS, Abernathy B, Agarwal G, Ballén-Taborda C, Cameron C, et al. The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics. PMID 31043755 DOI: 10.1038/S41588-019-0405-Z  0.59
2019 Korani W, Clevenger JP, Chu Y, Ozias-Akins P. Machine Learning as an Effective Method for Identifying True Single Nucleotide Polymorphisms in Polyploid Plants. The Plant Genome. 12. PMID 30951095 DOI: 10.3835/plantgenome2018.05.0023  0.582
2018 Patil AS, Popovsky S, Levy Y, Chu Y, Clevenger J, Ozias-Akins P, Hovav R. Genetic insight and mapping of the pod constriction trait in Virginia-type peanut. Bmc Genetics. 19: 93. PMID 30340455 DOI: 10.1186/S12863-018-0674-Z  0.575
2018 Han S, Yuan M, Clevenger JP, Li C, Hagan A, Zhang X, Chen C, He G. A SNP-Based Linkage Map Revealed QTLs for Resistance to Early and Late Leaf Spot Diseases in Peanut ( L.). Frontiers in Plant Science. 9: 1012. PMID 30042783 DOI: 10.3389/fpls.2018.01012  0.399
2018 Clevenger JP, Korani W, Ozias-Akins P, Jackson S. Haplotype-Based Genotyping in Polyploids. Frontiers in Plant Science. 9: 564. PMID 29755500 DOI: 10.3389/Fpls.2018.00564  0.635
2018 Agarwal G, Clevenger J, Pandey MK, Wang H, Shasidhar Y, Chu Y, Fountain JC, Choudhary D, Culbreath AK, Liu X, Huang G, Wang X, Deshmukh R, Holbrook CC, Bertioli DJ, et al. High-density genetic map using whole-genome re-sequencing for fine mapping and candidate gene discovery for disease resistance in peanut. Plant Biotechnology Journal. PMID 29637729 DOI: 10.1111/Pbi.12930  0.623
2018 Clevenger J, Chu Y, Chavarro C, Botton S, Culbreath A, Isleib TG, Holbrook CC, Ozias-Akins P. Mapping Late Leaf Spot Resistance in Peanut () Using QTL-seq Reveals Markers for Marker-Assisted Selection. Frontiers in Plant Science. 9: 83. PMID 29459876 DOI: 10.3389/Fpls.2018.00083  0.623
2017 Korani WA, Chu Y, Holbrook C, Clevenger J, Ozias-Akins P. Genotypic Regulation of Aflatoxin Accumulation but Not Aspergillus Fungal Growth upon Post-Harvest Infection of Peanut (Arachis hypogaea L.) Seeds. Toxins. 9. PMID 28704974 DOI: 10.3390/Toxins9070218  0.524
2017 Clevenger J, Chu Y, Arrais Guimaraes L, Maia T, Bertioli D, Leal-Bertioli S, Timper P, Holbrook CC, Ozias-Akins P. Gene expression profiling describes the genetic regulation of Meloidogyne arenaria resistance in Arachis hypogaea and reveals a candidate gene for resistance. Scientific Reports. 7: 1317. PMID 28465503 DOI: 10.1038/S41598-017-00971-6  0.551
2017 Pandey MK, Agarwal G, Kale SM, Clevenger J, Nayak SN, Sriswathi M, Chitikineni A, Chavarro C, Chen X, Upadhyaya HD, Vishwakarma MK, Leal-Bertioli S, Liang X, Bertioli DJ, Guo B, et al. Development and Evaluation of a High Density Genotyping 'Axiom_Arachis' Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut. Scientific Reports. 7: 40577. PMID 28091575 DOI: 10.1038/Srep40577  0.647
2016 Clevenger J, Chu Y, Chavarro C, Agarwal G, Bertioli DJ, Leal-Bertioli SC, Pandey MK, Vaughn J, Abernathy B, Barkley NA, Hovav R, Burow M, Nayak SN, Chitikineni A, Isleib TG, et al. Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut. Molecular Plant. PMID 27993622 DOI: 10.1016/J.Molp.2016.11.015  0.679
2016 Clevenger J, Marasigan K, Liakos V, Sobolev V, Vellidis G, Holbrook C, Ozias-Akins P. RNA Sequencing of Contaminated Seeds Reveals the State of the Seed Permissive for Pre-Harvest Aflatoxin Contamination and Points to a Potential Susceptibility Factor. Toxins. 8. PMID 27827875 DOI: 10.3390/Toxins8110317  0.516
2016 Clevenger J, Chu Y, Scheffler B, Ozias-Akins P. A Developmental Transcriptome Map for Allotetraploid Arachis hypogaea. Frontiers in Plant Science. 7: 1446. PMID 27746793 DOI: 10.3389/Fpls.2016.01446  0.577
2016 Gupta K, Kayam G, Faigenboim-Doron A, Clevenger J, Ozias-Akins P, Hovav R. Gene expression profiling during seed-filling process in peanut with emphasis on oil biosynthesis networks. Plant Science : An International Journal of Experimental Plant Biology. 248: 116-27. PMID 27181953 DOI: 10.1016/J.Plantsci.2016.04.014  0.516
2016 Bertioli DJ, Cannon SB, Froenicke L, Huang G, Farmer AD, Cannon EK, Liu X, Gao D, Clevenger J, Dash S, Ren L, Moretzsohn MC, Shirasawa K, Huang W, Vidigal B, et al. The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics. PMID 26901068 DOI: 10.1038/Ng.3517  0.601
2015 Sun L, Rodriguez GR, Clevenger JP, Illa-Berenguer E, Lin J, Blakeslee JJ, Liu W, Fei Z, Wijeratne A, Meulia T, van der Knaap E. Candidate gene selection and detailed morphological evaluations of fs8.1, a quantitative trait locus controlling tomato fruit shape. Journal of Experimental Botany. PMID 26175354 DOI: 10.1093/jxb/erv361  0.395
2015 Clevenger JP, Ozias-Akins P. SWEEP: A Tool for Filtering High-Quality SNPs in Polyploid Crops. G3 (Bethesda, Md.). 5: 1797-803. PMID 26153076 DOI: 10.1534/G3.115.019703  0.6
2015 Leal-Bertioli S, Shirasawa K, Abernathy B, Moretzsohn M, Chavarro C, Clevenger J, Ozias-Akins P, Jackson S, Bertioli D. Tetrasomic recombination is surprisingly frequent in allotetraploid Arachis. Genetics. 199: 1093-105. PMID 25701284 DOI: 10.1534/Genetics.115.174607  0.611
2015 Clevenger J, Chavarro C, Pearl SA, Ozias-Akins P, Jackson SA. Single Nucleotide Polymorphism Identification in Polyploids: A Review, Example, and Recommendations. Molecular Plant. 8: 831-846. PMID 25676455 DOI: 10.1016/J.Molp.2015.02.002  0.631
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