Richard David Vierstra - Publications

Washington University, Saint Louis, St. Louis, MO 
Genetics, Plant Physiology, Microbiology Biology

235 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Burgie ES, Li H, Gannam ZTK, McLoughlin KE, Vierstra RD, Li H. The structure of Arabidopsis phytochrome A reveals topological and functional diversification among the plant photoreceptor isoforms. Nature Plants. PMID 37291396 DOI: 10.1038/s41477-023-01435-8  0.324
2023 Lee HN, Chacko J, Gonzalez Solís A, Chen KE, Barros JAS, Signorelli S, Millar AH, Vierstra RD, Eliceiri KW, Otegui MS. The autophagy receptor NBR1 directs the clearance of photodamaged chloroplasts. Elife. 12. PMID 37070813 DOI: 10.7554/eLife.86030  0.407
2022 Marshall RS, Gemperline D, McLoughlin F, Book AJ, Hofmann K, Vierstra RD. Correction: An evolutionarily distinct chaperone promotes 20S proteasome α-ring assembly in plants. Journal of Cell Science. 135. PMID 35894685 DOI: 10.1242/jcs.260414  0.723
2022 Lee KH, Minami A, Marshall RS, Book AJ, Farmer LM, Walker JM, Vierstra RD. Correction to: The RPT2 Subunit of the 26S Proteasome Directs Complex Assembly, Histone Dynamics, and Gametophyte and Sporophyte Development in Arabidopsis. The Plant Cell. PMID 35670749 DOI: 10.1093/plcell/koac170  0.772
2022 Li H, Burgie ES, Gannam ZTK, Li H, Vierstra RD. Plant phytochrome B is an asymmetric dimer with unique signalling potential. Nature. PMID 35355010 DOI: 10.1038/s41586-022-04529-z  0.319
2022 Marshall RS, Hua Z, Mali S, McLoughlin F, Vierstra RD. ATG8-Binding UIM Proteins Define a New Class of Autophagy Adaptors and Receptors. Cell. 185: 1101-1102. PMID 35303423 DOI: 10.1016/j.cell.2022.03.002  0.508
2022 Marshall RS, Gemperline D, McLoughlin F, Book AJ, Hofmann K, Vierstra RD. Correction: An evolutionarily distinct chaperone promotes 20S proteasome α-ring assembly in plants. Journal of Cell Science. 135. PMID 35088835 DOI: 10.1242/jcs.259736  0.723
2021 Suttangkakul A, Li F, Chung T, Vierstra RD. Corrigendum to: The ATG1/ATG13 Protein Kinase Complex Is Both a Regulator and a Target of Autophagic Recycling in Arabidopsis. The Plant Cell. PMID 34520558 DOI: 10.1093/plcell/koab212  0.746
2021 Burgie ES, Gannam ZTK, McLoughlin KE, Sherman CD, Holehouse AS, Stankey RJ, Vierstra RD. Differing biophysical properties underpin the unique signaling potentials within the plant phytochrome photoreceptor families. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34039713 DOI: 10.1073/pnas.2105649118  0.801
2021 Marshall RS, Li F, Gemperline DC, Book AJ, Vierstra RD. Autophagic Degradation of the 26S Proteasome Is Mediated by the Dual ATG8/Ubiquitin Receptor RPN10 in Arabidopsis. Molecular Cell. 81: 2053. PMID 33961777 DOI: 10.1016/j.molcel.2021.03.026  0.7
2020 Marshall RS, Gemperline DC, McLoughlin F, Book AJ, Hofmann K, Vierstra RD. An evolutionarily distinct chaperone promotes 20S proteasome α-ring assembly in plants. Journal of Cell Science. PMID 34005380 DOI: 10.1242/jcs.249862  0.697
2020 Marshall RS, Gemperline DC, McLoughlin F, Book AJ, Hofmann K, Vierstra RD. An evolutionarily distinct chaperone promotes 20S proteasome α-ring assembly in plants. Journal of Cell Science. PMID 33033180 DOI: 10.1242/jcs.249862  0.695
2020 Liu F, Hu W, Li F, Marshall RS, Zarza X, Munnik T, Vierstra RD. AUTOPHAGY-RELATED14 And Its Associated Phosphatidylinositol 3-Kinase Complex Promotes Autophagy In Arabidopsis. The Plant Cell. PMID 33004618 DOI: 10.1105/tpc.20.00285  0.344
2020 McLoughlin F, Marshall RS, Ding X, Chatt EC, Kirkpatrick LD, Augustine RC, Li F, Otegui MS, Vierstra RD. Autophagy Plays Prominent Roles in Amino Acid, Nucleotide, and Carbohydrate Metabolism During Fixed-carbon Starvation in MaizeE. The Plant Cell. PMID 32616663 DOI: 10.1105/Tpc.20.00226  0.361
2020 Zhang X, Ding X, Marshall RS, Paez-Valencia J, Lacey P, Vierstra RD, Otegui M. Reticulon proteins modulate autophagy of the endoplasmic reticulum in maize endosperm. Elife. 9. PMID 32011236 DOI: 10.7554/Elife.51918  0.347
2020 Zhang X, Ding X, Marshall RS, Paez-Valencia J, Lacey P, Vierstra RD, Otegui MS. Author response: Reticulon proteins modulate autophagy of the endoplasmic reticulum in maize endosperm Elife. DOI: 10.7554/Elife.51918.Sa2  0.34
2019 Yan LL, Simms CL, McLoughlin F, Vierstra RD, Zaher HS. Oxidation and alkylation stresses activate ribosome-quality control. Nature Communications. 10: 5611. PMID 31819057 DOI: 10.1038/S41467-019-13579-3  0.31
2019 Hayama R, Yang P, Valverde F, Mizoguchi T, Furutani-Hayama I, Vierstra RD, Coupland G. Ubiquitin carboxyl-terminal hydrolases are required for period maintenance of the circadian clock at high temperature in Arabidopsis. Scientific Reports. 9: 17030. PMID 31745110 DOI: 10.1038/S41598-019-53229-8  0.64
2019 Huang X, Zheng C, Liu F, Yang C, Zheng P, Lu X, Tian J, Chung T, Otegui MS, Xiao S, Gao C, Vierstra RD, Li F. Genetic Analyses of the Arabidopsis ATG1 Kinase Complex Reveal Both Kinase-Dependent and Independent Autophagic Routes during Fixed-Carbon Starvation. The Plant Cell. PMID 31615848 DOI: 10.1105/Tpc.19.00066  0.391
2019 Gemperline DC, Marshall RS, Lee KH, Zhao Q, Hu W, McLoughlin F, Scalf M, Smith LM, Vierstra RD. Proteomic analysis of affinity-purified 26S proteasomes identifies a suite of assembly chaperones in . The Journal of Biological Chemistry. PMID 31562246 DOI: 10.1074/Jbc.Ra119.010219  0.44
2019 Jung H, Lee HN, Marshall RS, Lomax AW, Yoon MJ, Kim J, Kim JH, Vierstra RD, Chung T. NBR1 Mediates Selective Autophagy of Defective Proteins in Arabidopsis. Journal of Experimental Botany. PMID 31494674 DOI: 10.1093/Jxb/Erz404  0.39
2019 Marshall RS, Vierstra RD. Dynamic Regulation of the 26S Proteasome: From Synthesis to Degradation. Frontiers in Molecular Biosciences. 6: 40. PMID 31231659 DOI: 10.3389/Fmolb.2019.00040  0.435
2019 McLoughlin F, Kim M, Marshall RS, Vierstra RD, Vierling E. HSP101 Interacts with the Proteasome and Promotes the Clearance of Ubiquitylated Protein Aggregates. Plant Physiology. PMID 31113833 DOI: 10.1104/Pp.19.00263  0.371
2019 Marshall RS, Hua Z, Mali S, McLoughlin F, Vierstra RD. ATG8-Binding UIM Proteins Define a New Class of Autophagy Adaptors and Receptors. Cell. PMID 30955882 DOI: 10.1016/J.Cell.2019.02.009  0.605
2019 Huang H, McLoughlin KE, Sorkin ML, Burgie ES, Bindbeutel RK, Vierstra RD, Nusinow DA. PCH1 regulates light, temperature, and circadian signaling as a structural component of phytochrome B-photobodies in . Proceedings of the National Academy of Sciences of the United States of America. PMID 30948632 DOI: 10.1073/Pnas.1818217116  0.435
2018 McLoughlin F, Augustine RC, Marshall RS, Li F, Kirkpatrick LD, Otegui MS, Vierstra RD. Maize multi-omics reveal roles for autophagic recycling in proteome remodelling and lipid turnover. Nature Plants. PMID 30478358 DOI: 10.1038/S41477-018-0299-2  0.421
2018 Marshall RS, Vierstra RD. To save or degrade: balancing proteasome homeostasis to maximize cell survival. Autophagy. 1-3. PMID 30204036 DOI: 10.1080/15548627.2018.1515531  0.335
2018 Humberto Castro P, Bachmair A, Bejarano ER, Coupland G, Lois LM, Sadanandom A, van den Burg HA, Vierstra RD, Azevedo H. Revised nomenclature and functional overview of the ULP gene family of plant deSUMOylating proteases. Journal of Experimental Botany. PMID 30124991 DOI: 10.1093/Jxb/Ery301  0.406
2018 Augustine RC, Vierstra RD. SUMOylation: re-wiring the plant nucleus during stress and development. Current Opinion in Plant Biology. 45: 143-154. PMID 30014889 DOI: 10.1016/J.Pbi.2018.06.006  0.397
2018 Liu F, Hu W, Vierstra RD. The Vacuolar Protein Sorting-38 Subunit of the Phosphatidylinositol-3-Kinase Complex Plays Critical Roles in Autophagy, Endosome Sorting, and Gravitropism. Frontiers in Plant Science. 9: 781. PMID 29967628 DOI: 10.3389/Fpls.2018.00781  0.44
2018 Majee M, Kumar S, Kathare PK, Wu S, Gingerich D, Nayak NR, Salaita L, Dinkins R, Martin K, Goodin M, Dirk LMA, Lloyd TD, Zhu L, Chappell J, Hunt AG, ... Vierstra R, et al. KELCH F-BOX protein positively influences Arabidopsis seed germination by targeting PHYTOCHROME-INTERACTING FACTOR1. Proceedings of the National Academy of Sciences of the United States of America. 115: E4120-E4129. PMID 29632208 DOI: 10.1073/Pnas.1711919115  0.676
2018 Marshall RS, Vierstra RD. Proteasome storage granules protect proteasomes from autophagic degradation upon carbon starvation. Elife. 7. PMID 29624167 DOI: 10.7554/Elife.34532  0.369
2018 Rytz TC, Miller MJ, McLoughlin F, Augustine RC, Marshall RS, Juan YT, Charng YY, Scalf M, Smith LM, Vierstra RD. SUMOylome Profiling Reveals a Diverse Array of Nuclear Targets Modified by the SUMO Ligase SIZ1 During Heat Stress. The Plant Cell. PMID 29588388 DOI: 10.1105/Tpc.17.00993  0.619
2018 Marshall RS, Vierstra RD. Autophagy: The Master of Bulk and Selective Recycling. Annual Review of Plant Biology. PMID 29539270 DOI: 10.1146/Annurev-Arplant-042817-040606  0.438
2018 Üstün S, Hafrén A, Liu Q, Marshall RS, Minina EA, Bozhkov P, Vierstra RD, Hofius D. Bacteria exploit autophagy for proteasome degradation and enhanced virulence in plants. The Plant Cell. PMID 29500318 DOI: 10.1105/Tpc.17.00815  0.374
2017 Friesner J, Assmann SM, Bastow R, Bailey-Serres J, Beynon J, Brendel V, Buell CR, Bucksch A, Busch W, Demura T, Dinneny JR, Doherty CJ, Eveland AL, Falter-Braun P, Gehan MA, ... ... Vierstra R, et al. The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology. Plant Physiology. 175: 1499-1509. PMID 29208732 DOI: 10.1104/Pp.17.01490  0.356
2017 Burgie ES, Bussell AN, Lye SH, Wang T, Hu W, McLoughlin KE, Weber EL, Li H, Vierstra RD. Photosensing and Thermosensing by Phytochrome B Require Both Proximal and Distal Allosteric Features within the Dimeric Photoreceptor. Scientific Reports. 7: 13648. PMID 29057954 DOI: 10.1038/S41598-017-14037-0  0.405
2017 Aguilar-Hernández V, Kim DY, Stankey RJ, Scalf M, Smith LM, Vierstra RD. Mass Spectrometric Analyses Reveal a Central Role for Ubiquitylation in Remodeling the Arabidopsis Proteome During Photomorphogenesis. Molecular Plant. PMID 28461270 DOI: 10.1016/J.Molp.2017.04.008  0.825
2017 Marshall RS, Gemperline DC, Vierstra RD. Purification of 26S Proteasomes and Their Subcomplexes from Plants. Methods in Molecular Biology (Clifton, N.J.). 1511: 301-334. PMID 27730621 DOI: 10.1007/978-1-4939-6533-5_24  0.459
2017 Majee M, Wu S, Salaita L, Gingerich D, Dirk LM, Chappell J, Hunt AG, Vierstra R, Downie AB. A misannotated locus positively influencing Arabidopsis seed germination is deconvoluted using multiple methods, including surrogate splicing Plant Gene. 10: 74-85. DOI: 10.1016/J.Plgene.2017.05.012  0.387
2016 Legris M, Klose C, Burgie ES, Costigliolo C, Neme M, Hiltbrunner A, Wigge PA, Schäfer E, Vierstra RD, Casal JJ. Phytochrome B integrates light and temperature signals in Arabidopsis. Science (New York, N.Y.). PMID 27789798 DOI: 10.1126/Science.Aaf5656  0.348
2016 Rytz TC, Miller MJ, Vierstra RD. Purification of SUMO Conjugates from Arabidopsis for Mass Spectrometry Analysis. Methods in Molecular Biology (Clifton, N.J.). 1475: 257-281. PMID 27631811 DOI: 10.1007/978-1-4939-6358-4_18  0.624
2016 Marshall RS, McLoughlin F, Vierstra RD. Autophagic Turnover of Inactive 26S Proteasomes in Yeast Is Directed by the Ubiquitin Receptor Cue5 and the Hsp42 Chaperone. Cell Reports. PMID 27477278 DOI: 10.1016/J.Celrep.2016.07.015  0.375
2016 Augustine RC, York SL, Rytz TC, Vierstra RD. Defining the SUMO System in Maize: SUMOylation Is Up-Regulated During Endosperm Development and Rapidly Induced by Stress. Plant Physiology. PMID 27208252 DOI: 10.1104/Pp.16.00353  0.447
2016 Gladman NP, Marshall RS, Lee KH, Vierstra RD. The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis. The Plant Cell. PMID 27194708 DOI: 10.1105/Tpc.15.01022  0.407
2016 Burgie ES, Zhang J, Vierstra RD. Crystal Structure of Deinococcus Phytochrome in the Photoactivated State Reveals a Cascade of Structural Rearrangements during Photoconversion. Structure (London, England : 1993). PMID 26853942 DOI: 10.1016/J.Str.2016.01.001  0.6
2016 Klionsky DJ, Abdelmohsen K, Abe A, Abedin MJ, Abeliovich H, Acevedo Arozena A, Adachi H, Adams CM, Adams PD, Adeli K, Adhihetty PJ, Adler SG, Agam G, Agarwal R, Aghi MK, ... ... Vierstra RD, et al. Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy. 12: 1-222. PMID 26799652 DOI: 10.1080/15548627.2015.1100356  0.747
2016 Hua Z, Vierstra RD. Ubiquitin Goes Green. Trends in Cell Biology. 26: 3-5. PMID 26706380 DOI: 10.1016/J.Tcb.2015.12.001  0.58
2015 Marshall RS, Vierstra RD. Eat or be eaten: The autophagic plight of inactive 26S proteasomes. Autophagy. 11: 1927-8. PMID 26291247 DOI: 10.1080/15548627.2015.1078961  0.439
2015 Marshall RS, Li F, Gemperline DC, Book AJ, Vierstra RD. Autophagic Degradation of the 26S Proteasome Is Mediated by the Dual ATG8/Ubiquitin Receptor RPN10 in Arabidopsis. Molecular Cell. 58: 1053-66. PMID 26004230 DOI: 10.1016/J.Molcel.2015.04.023  0.748
2015 Li F, Chung T, Pennington JG, Federico ML, Kaeppler HF, Kaeppler SM, Otegui MS, Vierstra RD. Autophagic recycling plays a central role in maize nitrogen remobilization. The Plant Cell. 27: 1389-408. PMID 25944100 DOI: 10.1105/Tpc.15.00158  0.427
2015 Spitzer C, Li F, Buono R, Roschzttardtz H, Chung T, Zhang M, Osteryoung KW, Vierstra RD, Otegui MS. The endosomal protein CHARGED MULTIVESICULAR BODY PROTEIN1 regulates the autophagic turnover of plastids in Arabidopsis. The Plant Cell. 27: 391-402. PMID 25649438 DOI: 10.1105/Tpc.114.135939  0.45
2014 Burgie ES, Vierstra RD. Phytochromes: an atomic perspective on photoactivation and signaling. The Plant Cell. 26: 4568-83. PMID 25480369 DOI: 10.1105/Tpc.114.131623  0.382
2014 Burgie ES, Wang T, Bussell AN, Walker JM, Li H, Vierstra RD. Crystallographic and electron microscopic analyses of a bacterial phytochrome reveal local and global rearrangements during photoconversion. The Journal of Biological Chemistry. 289: 24573-87. PMID 25006244 DOI: 10.1074/Jbc.M114.571661  0.392
2014 Li F, Vierstra RD. Arabidopsis ATG11, a scaffold that links the ATG1-ATG13 kinase complex to general autophagy and selective mitophagy. Autophagy. 10: 1466-7. PMID 24991832 DOI: 10.4161/Auto.29320  0.403
2014 Burgie ES, Bussell AN, Walker JM, Dubiel K, Vierstra RD. Crystal structure of the photosensing module from a red/far-red light-absorbing plant phytochrome. Proceedings of the National Academy of Sciences of the United States of America. 111: 10179-84. PMID 24982198 DOI: 10.1073/Pnas.1403096111  0.414
2014 Li F, Chung T, Vierstra RD. AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis. The Plant Cell. 26: 788-807. PMID 24563201 DOI: 10.1105/Tpc.113.120014  0.415
2014 Cornilescu CC, Cornilescu G, Burgie ES, Markley JL, Ulijasz AT, Vierstra RD. Dynamic structural changes underpin photoconversion of a blue/green cyanobacteriochrome between its dark and photoactivated states. The Journal of Biological Chemistry. 289: 3055-65. PMID 24337572 DOI: 10.1074/Jbc.M113.531053  0.374
2014 Cornilescu G, Cornilescu C, Burgie S, Walker J, Markley J, Ulijasz A, Vierstra R. Blue Light-Absorbing State of TePixJ, an Active Cyanobacteriochrome Domain Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2M7U/Pdb  0.302
2013 Hua Z, Pool JE, Schmitz RJ, Schultz MD, Shiu SH, Ecker JR, Vierstra RD. Epigenomic programming contributes to the genomic drift evolution of the F-Box protein superfamily in Arabidopsis Proceedings of the National Academy of Sciences of the United States of America. 110: 16927-16932. PMID 24082131 DOI: 10.1073/Pnas.1316009110  0.585
2013 Kim DY, Scalf M, Smith LM, Vierstra RD. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. The Plant Cell. 25: 1523-40. PMID 23667124 DOI: 10.1105/Tpc.112.108613  0.435
2013 Russell JD, Scalf M, Book AJ, Ladror DT, Vierstra RD, Smith LM, Coon JJ. Characterization and quantification of intact 26S proteasome proteins by real-time measurement of intrinsic fluorescence prior to top-down mass spectrometry. Plos One. 8: e58157. PMID 23536786 DOI: 10.1371/Journal.Pone.0058157  0.729
2013 Zhang J, Stankey RJ, Vierstra RD. Structure-guided engineering of plant phytochrome B with altered photochemistry and light signaling. Plant Physiology. 161: 1445-57. PMID 23321421 DOI: 10.1104/Pp.112.208892  0.807
2013 Burgie ES, Walker JM, Phillips GN, Vierstra RD. A photo-labile thioether linkage to phycoviolobilin provides the foundation for the blue/green photocycles in DXCF-cyanobacteriochromes. Structure (London, England : 1993). 21: 88-97. PMID 23219880 DOI: 10.1016/J.Str.2012.11.001  0.379
2013 Miller MJ, Scalf M, Rytz TC, Hubler SL, Smith LM, Vierstra RD. Quantitative proteomics reveals factors regulating RNA biology as dynamic targets of stress-induced SUMOylation in Arabidopsis. Molecular & Cellular Proteomics : McP. 12: 449-63. PMID 23197790 DOI: 10.1074/Mcp.M112.025056  0.566
2012 Klionsky DJ, Abdalla FC, Abeliovich H, Abraham RT, Acevedo-Arozena A, Adeli K, Agholme L, Agnello M, Agostinis P, Aguirre-Ghiso JA, Ahn HJ, Ait-Mohamed O, Ait-Si-Ali S, Akematsu T, Akira S, ... ... Vierstra RD, et al. Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy. 8: 445-544. PMID 22966490 DOI: 10.4161/Auto.19496  0.656
2012 Lee KH, Marshall RS, Slivicke LM, Vierstra RD. Genetic analyses of the Arabidopsis 26S proteasome regulatory particle reveal its importance during light stress and a specific role for the N-terminus of RPT2 in development. Plant Signaling & Behavior. 7: 973-8. PMID 22836496 DOI: 10.4161/Psb.20934  0.489
2012 Christians MJ, Gingerich DJ, Hua Z, Lauer TD, Vierstra RD. The light-response BTB1 and BTB2 proteins assemble nuclear ubiquitin ligases that modify phytochrome B and D signaling in Arabidopsis. Plant Physiology. 160: 118-34. PMID 22732244 DOI: 10.1104/Pp.112.199109  0.658
2012 Li F, Vierstra RD. Regulator and substrate: dual roles for the ATG1-ATG13 kinase complex during autophagic recycling in Arabidopsis. Autophagy. 8: 982-4. PMID 22714291 DOI: 10.4161/Auto.20240  0.427
2012 Li F, Vierstra RD. Autophagy: a multifaceted intracellular system for bulk and selective recycling. Trends in Plant Science. 17: 526-37. PMID 22694835 DOI: 10.1016/J.Tplants.2012.05.006  0.41
2012 Vierstra RD. The expanding universe of ubiquitin and ubiquitin-like modifiers. Plant Physiology. 160: 2-14. PMID 22693286 DOI: 10.1104/Pp.112.200667  0.456
2011 Lee KH, Minami A, Marshall RS, Book AJ, Farmer LM, Walker JM, Vierstra RD. The RPT2 subunit of the 26S proteasome directs complex assembly, histone dynamics, and gametophyte and sporophyte development in Arabidopsis. The Plant Cell. 23: 4298-317. PMID 22158466 DOI: 10.1105/Tpc.111.089482  0.813
2011 Suttangkakul A, Li F, Chung T, Vierstra RD. The ATG1/ATG13 protein kinase complex is both a regulator and a target of autophagic recycling in Arabidopsis. The Plant Cell. 23: 3761-79. PMID 21984698 DOI: 10.1105/Tpc.111.090993  0.788
2011 Ulijasz AT, Vierstra RD. Phytochrome structure and photochemistry: recent advances toward a complete molecular picture. Current Opinion in Plant Biology. 14: 498-506. PMID 21733743 DOI: 10.1016/J.Pbi.2011.06.002  0.43
2011 Vierstra RD, Zhang J. Phytochrome signaling: solving the Gordian knot with microbial relatives. Trends in Plant Science. 16: 417-26. PMID 21719341 DOI: 10.1016/J.Tplants.2011.05.011  0.614
2011 Zheng X, Miller ND, Lewis DR, Christians MJ, Lee KH, Muday GK, Spalding EP, Vierstra RD. AUXIN UP-REGULATED F-BOX PROTEIN1 regulates the cross talk between auxin transport and cytokinin signaling during plant root growth. Plant Physiology. 156: 1878-93. PMID 21653785 DOI: 10.1104/Pp.111.179812  0.617
2011 Lenz HD, Vierstra RD, Nürnberger T, Gust AA. ATG7 contributes to plant basal immunity towards fungal infection. Plant Signaling & Behavior. 6: 1040-2. PMID 21617379 DOI: 10.4161/Psb.6.7.15605  0.32
2011 Hua Z, Vierstra RD. The cullin-RING ubiquitin-protein ligases. Annual Review of Plant Biology. 62: 299-334. PMID 21370976 DOI: 10.1146/Annurev-Arplant-042809-112256  0.688
2011 Dowil RT, Lu X, Saracco SA, Vierstra RD, Downes BP. Arabidopsis membrane-anchored ubiquitin-fold (MUB) proteins localize a specific subset of ubiquitin-conjugating (E2) enzymes to the plasma membrane. The Journal of Biological Chemistry. 286: 14913-21. PMID 21345795 DOI: 10.1074/Jbc.M110.158808  0.346
2011 Reyes FC, Chung T, Holding D, Jung R, Vierstra R, Otegui MS. Delivery of prolamins to the protein storage vacuole in maize aleurone cells. The Plant Cell. 23: 769-84. PMID 21343414 DOI: 10.1105/Tpc.110.082156  0.372
2011 Lenz HD, Haller E, Melzer E, Kober K, Wurster K, Stahl M, Bassham DC, Vierstra RD, Parker JE, Bautor J, Molina A, Escudero V, Shindo T, van der Hoorn RA, Gust AA, et al. Autophagy differentially controls plant basal immunity to biotrophic and necrotrophic pathogens. The Plant Journal : For Cell and Molecular Biology. 66: 818-30. PMID 21332848 DOI: 10.1111/J.1365-313X.2011.04546.X  0.362
2011 Hua Z, Zou C, Shiu SH, Vierstra RD. Phylogenetic comparison of F-Box (FBX) gene superfamily within the plant kingdom reveals divergent evolutionary histories indicative of genomic drift. Plos One. 6: e16219. PMID 21297981 DOI: 10.1371/Journal.Pone.0016219  0.629
2011 Yu Z, Kleifeld O, Lande-Atir A, Bsoul M, Kleiman M, Krutauz D, Book A, Vierstra RD, Hofmann K, Reis N, Glickman MH, Pick E. Dual function of Rpn5 in two PCI complexes, the 26S proteasome and COP9 signalosome. Molecular Biology of the Cell. 22: 911-20. PMID 21289098 DOI: 10.1091/Mbc.E10-08-0655  0.726
2011 Miller MJ, Vierstra RD. Mass spectrometric identification of SUMO substrates provides insights into heat stress-induced SUMOylation in plants. Plant Signaling & Behavior. 6: 130-3. PMID 21270536 DOI: 10.4161/Psb.6.1.14256  0.645
2011 Reyes FC, Otegui MS, Vierstra R. Reply: Internal Membranes in Maize Aleurone Protein Storage Vacuoles: Beyond Autophagy The Plant Cell. 23: 4171-4172. DOI: 10.1105/Tpc.111.231240  0.338
2010 Miller MJ, Barrett-Wilt GA, Hua Z, Vierstra RD. Proteomic analyses identify a diverse array of nuclear processes affected by small ubiquitin-like modifier conjugation in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 107: 16512-7. PMID 20813957 DOI: 10.1073/Pnas.1004181107  0.741
2010 Li H, Zhang J, Vierstra RD, Li H. Quaternary organization of a phytochrome dimer as revealed by cryoelectron microscopy. Proceedings of the National Academy of Sciences of the United States of America. 107: 10872-7. PMID 20534495 DOI: 10.1073/Pnas.1001908107  0.613
2010 Book AJ, Gladman NP, Lee SS, Scalf M, Smith LM, Vierstra RD. Affinity purification of the Arabidopsis 26 S proteasome reveals a diverse array of plant proteolytic complexes. The Journal of Biological Chemistry. 285: 25554-69. PMID 20516081 DOI: 10.1074/Jbc.M110.136622  0.762
2010 Chung T, Phillips AR, Vierstra RD. ATG8 lipidation and ATG8-mediated autophagy in Arabidopsis require ATG12 expressed from the differentially controlled ATG12A AND ATG12B loci. The Plant Journal : For Cell and Molecular Biology. 62: 483-93. PMID 20136727 DOI: 10.1111/J.1365-313X.2010.04166.X  0.717
2010 Farmer LM, Book AJ, Lee KH, Lin YL, Fu H, Vierstra RD. The RAD23 family provides an essential connection between the 26S proteasome and ubiquitylated proteins in Arabidopsis. The Plant Cell. 22: 124-42. PMID 20086187 DOI: 10.1105/Tpc.109.072660  0.831
2010 Ulijasz AT, Cornilescu G, Cornilescu CC, Zhang J, Rivera M, Markley JL, Vierstra RD. Structural basis for the photoconversion of a phytochrome to the activated Pfr form. Nature. 463: 250-4. PMID 20075921 DOI: 10.1038/Nature08671  0.603
2010 Jabben M, Shanklin J, Vierstra RD. Red light-induced accumulation of ubiquitin-phytochrome conjugates in both monocots and dicots. Plant Physiology. 90: 380-4. PMID 16666778 DOI: 10.1104/Pp.90.2.380  0.38
2010 Vierstra RD. Demonstration of ATP-Dependent, Ubiquitin-Conjugating Activities in Higher Plants. Plant Physiology. 84: 332-6. PMID 16665439 DOI: 10.1104/Pp.84.2.332  0.46
2009 Ulijasz AT, Cornilescu G, von Stetten D, Cornilescu C, Velazquez Escobar F, Zhang J, Stankey RJ, Rivera M, Hildebrandt P, Vierstra RD. Cyanochromes are blue/green light photoreversible photoreceptors defined by a stable double cysteine linkage to a phycoviolobilin-type chromophore. The Journal of Biological Chemistry. 284: 29757-72. PMID 19671704 DOI: 10.1074/Jbc.M109.038513  0.799
2009 Vierstra RD. The ubiquitin-26S proteasome system at the nexus of plant biology. Nature Reviews. Molecular Cell Biology. 10: 385-97. PMID 19424292 DOI: 10.1038/Nrm2688  0.487
2009 Saracco SA, Hansson M, Scalf M, Walker JM, Smith LM, Vierstra RD. Tandem affinity purification and mass spectrometric analysis of ubiquitylated proteins in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 59: 344-58. PMID 19292762 DOI: 10.1111/J.1365-313X.2009.03862.X  0.502
2009 Book AJ, Smalle J, Lee KH, Yang P, Walker JM, Casper S, Holmes JH, Russo LA, Buzzinotti ZW, Jenik PD, Vierstra RD. The RPN5 subunit of the 26s proteasome is essential for gametogenesis, sporophyte development, and complex assembly in Arabidopsis. The Plant Cell. 21: 460-78. PMID 19252082 DOI: 10.1105/Tpc.108.064444  0.811
2009 Christians MJ, Gingerich DJ, Hansen M, Binder BM, Kieber JJ, Vierstra RD. The BTB ubiquitin ligases ETO1, EOL1 and EOL2 act collectively to regulate ethylene biosynthesis in Arabidopsis by controlling type-2 ACC synthase levels. The Plant Journal : For Cell and Molecular Biology. 57: 332-45. PMID 18808454 DOI: 10.1111/J.1365-313X.2008.03693.X  0.453
2009 Chung T, Suttangkakul A, Vierstra RD. The ATG autophagic conjugation system in maize: ATG transcripts and abundance of the ATG8-lipid adduct are regulated by development and nutrient availability. Plant Physiology. 149: 220-34. PMID 18790996 DOI: 10.1104/Pp.108.126714  0.789
2008 Cornilescu G, Ulijasz AT, Cornilescu CC, Markley JL, Vierstra RD. Solution structure of a cyanobacterial phytochrome GAF domain in the red-light-absorbing ground state. Journal of Molecular Biology. 383: 403-13. PMID 18762196 DOI: 10.1016/J.Jmb.2008.08.034  0.331
2008 von Stetten D, Günther M, Scheerer P, Murgida DH, Mroginski MA, Krauss N, Lamparter T, Zhang J, Anstrom DM, Vierstra RD, Forest KT, Hildebrandt P. Chromophore heterogeneity and photoconversion in phytochrome crystals and solution studied by resonance Raman spectroscopy. Angewandte Chemie (International Ed. in English). 47: 4753-5. PMID 18484576 DOI: 10.1002/Anie.200705716  0.476
2008 Ulijasz AT, Cornilescu G, von Stetten D, Kaminski S, Mroginski MA, Zhang J, Bhaya D, Hildebrandt P, Vierstra RD. Characterization of two thermostable cyanobacterial phytochromes reveals global movements in the chromophore-binding domain during photoconversion. The Journal of Biological Chemistry. 283: 21251-66. PMID 18480055 DOI: 10.1074/Jbc.M801592200  0.577
2008 Phillips AR, Suttangkakul A, Vierstra RD. The ATG12-conjugating enzyme ATG10 Is essential for autophagic vesicle formation in Arabidopsis thaliana. Genetics. 178: 1339-53. PMID 18245858 DOI: 10.1534/Genetics.107.086199  0.827
2008 Wagner JR, Zhang J, von Stetten D, Günther M, Murgida DH, Mroginski MA, Walker JM, Forest KT, Hildebrandt P, Vierstra RD. Mutational analysis of Deinococcus radiodurans bacteriophytochrome reveals key amino acids necessary for the photochromicity and proton exchange cycle of phytochromes. The Journal of Biological Chemistry. 283: 12212-26. PMID 18192276 DOI: 10.1074/Jbc.M709355200  0.684
2008 Vierstra R. The role of the ubiquitin proteasome system in plant cellular signaling Comparative Biochemistry and Physiology Part a: Molecular & Integrative Physiology. 150: S176. DOI: 10.1016/J.Cbpa.2008.04.466  0.414
2008 von Stetten D, Günther M, Scheerer P, Murgida D, Mroginski M, Krauß N, Lamparter T, Zhang J, Anstrom D, Vierstra R, Forest K, Hildebrandt P. Resonanz-Raman-spektroskopische Untersuchung der Chromophorheterogenität und Photokonversion in Phytochromkristallen und -lösungen Angewandte Chemie. 120: 4831-4833. DOI: 10.1002/Ange.200705716  0.522
2007 Doelling JH, Phillips AR, Soyler-Ogretim G, Wise J, Chandler J, Callis J, Otegui MS, Vierstra RD. The ubiquitin-specific protease subfamily UBP3/UBP4 is essential for pollen development and transmission in Arabidopsis. Plant Physiology. 145: 801-13. PMID 17905865 DOI: 10.1104/Pp.106.095323  0.776
2007 Gingerich DJ, Hanada K, Shiu SH, Vierstra RD. Large-scale, lineage-specific expansion of a bric-a-brac/tramtrack/broad complex ubiquitin-ligase gene family in rice. The Plant Cell. 19: 2329-48. PMID 17720868 DOI: 10.1105/Tpc.107.051300  0.471
2007 Saracco SA, Miller MJ, Kurepa J, Vierstra RD. Genetic analysis of SUMOylation in Arabidopsis: conjugation of SUMO1 and SUMO2 to nuclear proteins is essential. Plant Physiology. 145: 119-34. PMID 17644626 DOI: 10.1104/Pp.107.102285  0.65
2007 Domagalska MA, Schomburg FM, Amasino RM, Vierstra RD, Nagy F, Davis SJ. Attenuation of brassinosteroid signaling enhances FLC expression and delays flowering. Development (Cambridge, England). 134: 2841-50. PMID 17611230 DOI: 10.1242/Dev.02866  0.39
2007 Yang P, Smalle J, Lee S, Yan N, Emborg TJ, Vierstra RD. Ubiquitin C-terminal hydrolases 1 and 2 affect shoot architecture in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 51: 441-57. PMID 17559514 DOI: 10.1111/J.1365-313X.2007.03154.X  0.692
2007 Walker JM, Vierstra RD. A ubiquitin-based vector for the co-ordinated synthesis of multiple proteins in plants. Plant Biotechnology Journal. 5: 413-21. PMID 17362486 DOI: 10.1111/J.1467-7652.2007.00250.X  0.433
2007 Wagner JR, Zhang J, Brunzelle JS, Vierstra RD, Forest KT. High resolution structure of Deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution. The Journal of Biological Chemistry. 282: 12298-309. PMID 17322301 DOI: 10.1074/Jbc.M611824200  0.704
2007 Binder BM, Walker JM, Gagne JM, Emborg TJ, Hemmann G, Bleecker AB, Vierstra RD. The Arabidopsis EIN3 binding F-Box proteins EBF1 and EBF2 have distinct but overlapping roles in ethylene signaling. The Plant Cell. 19: 509-23. PMID 17307926 DOI: 10.1105/Tpc.106.048140  0.735
2006 Stone SL, Williams LA, Farmer LM, Vierstra RD, Callis J. KEEP ON GOING, a RING E3 ligase essential for Arabidopsis growth and development, is involved in abscisic acid signaling. The Plant Cell. 18: 3415-28. PMID 17194765 DOI: 10.1105/Tpc.106.046532  0.801
2006 Potuschak T, Vansiri A, Binder BM, Lechner E, Vierstra RD, Genschik P. The exoribonuclease XRN4 is a component of the ethylene response pathway in Arabidopsis. The Plant Cell. 18: 3047-57. PMID 17085683 DOI: 10.1105/Tpc.106.046508  0.413
2006 Downes BP, Saracco SA, Lee SS, Crowell DN, Vierstra RD. MUBs, a family of ubiquitin-fold proteins that are plasma membrane-anchored by prenylation. The Journal of Biological Chemistry. 281: 27145-57. PMID 16831869 DOI: 10.1074/Jbc.M602283200  0.417
2006 Emborg TJ, Walker JM, Noh B, Vierstra RD. Multiple heme oxygenase family members contribute to the biosynthesis of the phytochrome chromophore in Arabidopsis. Plant Physiology. 140: 856-68. PMID 16428602 DOI: 10.1104/Pp.105.074211  0.426
2006 Garg AK, Sawers RJ, Wang H, Kim JK, Walker JM, Brutnell TP, Parthasarathy MV, Vierstra RD, Wu RJ. Light-regulated overexpression of an Arabidopsis phytochrome A gene in rice alters plant architecture and increases grain yield. Planta. 223: 627-36. PMID 16136335 DOI: 10.1007/S00425-005-0101-3  0.446
2005 Froehlich AC, Noh B, Vierstra RD, Loros J, Dunlap JC. Genetic and molecular analysis of phytochromes from the filamentous fungus Neurospora crassa. Eukaryotic Cell. 4: 2140-52. PMID 16339731 DOI: 10.1128/Ec.4.12.2140-2152.2005  0.431
2005 Wagner JR, Brunzelle JS, Forest KT, Vierstra RD. A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome. Nature. 438: 325-31. PMID 16292304 DOI: 10.1038/Nature04118  0.6
2005 Thompson AR, Doelling JH, Suttangkakul A, Vierstra RD. Autophagic nutrient recycling in Arabidopsis directed by the ATG8 and ATG12 conjugation pathways. Plant Physiology. 138: 2097-110. PMID 16040659 DOI: 10.1104/Pp.105.060673  0.804
2005 Karniol B, Wagner JR, Walker JM, Vierstra RD. Phylogenetic analysis of the phytochrome superfamily reveals distinct microbial subfamilies of photoreceptors. The Biochemical Journal. 392: 103-16. PMID 16004604 DOI: 10.1042/Bj20050826  0.586
2005 Book AJ, Yang P, Scalf M, Smith LM, Vierstra RD. Tripeptidyl peptidase II. An oligomeric protease complex from Arabidopsis. Plant Physiology. 138: 1046-57. PMID 15908606 DOI: 10.1104/Pp.104.057406  0.809
2005 Downes B, Vierstra RD. Post-translational regulation in plants employing a diverse set of polypeptide tags Biochemical Society Transactions. 33: 393-399. PMID 15787614 DOI: 10.1042/Bst0330393  0.484
2005 Thompson AR, Vierstra RD. Autophagic recycling: lessons from yeast help define the process in plants. Current Opinion in Plant Biology. 8: 165-73. PMID 15752997 DOI: 10.1016/J.Pbi.2005.01.013  0.463
2005 Gingerich DJ, Gagne JM, Salter DW, Hellmann H, Estelle M, Ma L, Vierstra RD. Cullins 3a and 3b assemble with members of the broad complex/tramtrack/bric-a-brac (BTB) protein family to form essential ubiquitin-protein ligases (E3s) in Arabidopsis. The Journal of Biological Chemistry. 280: 18810-21. PMID 15749712 DOI: 10.1074/Jbc.M413247200  0.768
2004 Baumeister W, Bachmair A, Chau V, Cohen R, Coffino P, Demartino G, Deshaies R, Dohmen J, Emr S, Finley D, Hampton R, Hill C, Hochstrasser M, Huber R, Jackson P, ... ... Vierstra R, et al. Varshavsky's contributions. Science (New York, N.Y.). 306: 1290-2. PMID 15550643 DOI: 10.1126/Science.306.5700.1290  0.338
2004 Smalle J, Vierstra RD. The ubiquitin 26S proteasome proteolytic pathway. Annual Review of Plant Biology. 55: 555-90. PMID 15377232 DOI: 10.1146/Annurev.Arplant.55.031903.141801  0.478
2004 Gagne JM, Smalle J, Gingerich DJ, Walker JM, Yoo SD, Yanagisawa S, Vierstra RD. Arabidopsis EIN3-binding F-box 1 and 2 form ubiquitin-protein ligases that repress ethylene action and promote growth by directing EIN3 degradation. Proceedings of the National Academy of Sciences of the United States of America. 101: 6803-8. PMID 15090654 DOI: 10.1073/Pnas.0401698101  0.771
2004 Chae YK, Im H, Zhao Q, Doelling JH, Vierstra RD, Markley JL. Prevention of aggregation after refolding by balanced stabilization-destabilization: production of the Arabidopsis thaliana protein APG8a (At4g21980) for NMR structure determination. Protein Expression and Purification. 34: 280-3. PMID 15003262 DOI: 10.1016/J.Pep.2003.11.007  0.343
2004 Karniol B, Vierstra RD. The HWE histidine kinases, a new family of bacterial two-component sensor kinases with potentially diverse roles in environmental signaling. Journal of Bacteriology. 186: 445-53. PMID 14702314 DOI: 10.1128/Jb.186.2.445-453.2004  0.32
2004 Yang P, Fu H, Walker J, Papa CM, Smalle J, Ju YM, Vierstra RD. Purification of the Arabidopsis 26 S proteasome: biochemical and molecular analyses revealed the presence of multiple isoforms. The Journal of Biological Chemistry. 279: 6401-13. PMID 14623884 DOI: 10.1074/Jbc.M311977200  0.659
2003 Downes BP, Stupar RM, Gingerich DJ, Vierstra RD. The HECT ubiquitin-protein ligase (UPL) family in Arabidopsis: UPL3 has a specific role in trichome development. The Plant Journal : For Cell and Molecular Biology. 35: 729-42. PMID 12969426 DOI: 10.1046/J.1365-313X.2003.01844.X  0.488
2003 Franklin KA, Davis SJ, Stoddart WM, Vierstra RD, Whitelam GC. Mutant analyses define multiple roles for phytochrome C in Arabidopsis photomorphogenesis. The Plant Cell. 15: 1981-9. PMID 12953105 DOI: 10.1105/Tpc.015164  0.429
2003 Peng Z, Shen Y, Feng S, Wang X, Chitteti BN, Vierstra RD, Deng XW. Evidence for a physical association of the COP9 signalosome, the proteasome, and specific SCF E3 ligases in vivo. Current Biology : Cb. 13: R504-5. PMID 12842023 DOI: 10.1016/S0960-9822(03)00439-1  0.475
2003 Newbigin E, Vierstra RD. Plant reproduction: Sex and self-denial. Nature. 423: 229-30. PMID 12748621 DOI: 10.1038/423229A  0.38
2003 Smalle J, Kurepa J, Yang P, Emborg TJ, Babiychuk E, Kushnir S, Vierstra RD. The pleiotropic role of the 26S proteasome subunit RPN10 in Arabidopsis growth and development supports a substrate-specific function in abscisic acid signaling. The Plant Cell. 15: 965-80. PMID 12671091 DOI: 10.1105/Tpc.009217  0.675
2003 Vierstra RD. The ubiquitin/26S proteasome pathway, the complex last chapter in the life of many plant proteins. Trends in Plant Science. 8: 135-42. PMID 12663224 DOI: 10.1016/S1360-1385(03)00014-1  0.489
2003 Karniol B, Vierstra RD. The pair of bacteriophytochromes from Agrobacterium tumefaciens are histidine kinases with opposing photobiological properties. Proceedings of the National Academy of Sciences of the United States of America. 100: 2807-12. PMID 12604773 DOI: 10.1073/Pnas.0437914100  0.38
2003 Kurepa J, Walker JM, Smalle J, Gosink MM, Davis SJ, Durham TL, Sung DY, Vierstra RD. The small ubiquitin-like modifier (SUMO) protein modification system in Arabidopsis. Accumulation of SUMO1 and -2 conjugates is increased by stress. The Journal of Biological Chemistry. 278: 6862-72. PMID 12482876 DOI: 10.1074/jbc.M209694200  0.318
2002 Gagne JM, Downes BP, Shiu SH, Durski AM, Vierstra RD. The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 99: 11519-24. PMID 12169662 DOI: 10.1073/Pnas.162339999  0.748
2002 Casal JJ, Davis SJ, Kirchenbauer D, Viczian A, Yanovsky MJ, Clough RC, Kircher S, Jordan-Beebe ET, Schäfer E, Nagy F, Vierstra RD. The serine-rich N-terminal domain of oat phytochrome a helps regulate light responses and subnuclear localization of the photoreceptor. Plant Physiology. 129: 1127-37. PMID 12114567 DOI: 10.1104/Pp.010977  0.446
2002 Doelling JH, Walker JM, Friedman EM, Thompson AR, Vierstra RD. The APG8/12-activating enzyme APG7 is required for proper nutrient recycling and senescence in Arabidopsis thaliana. The Journal of Biological Chemistry. 277: 33105-14. PMID 12070171 DOI: 10.1074/Jbc.M204630200  0.46
2002 Smalle J, Kurepa J, Yang P, Babiychuk E, Kushnir S, Durski A, Vierstra RD. Cytokinin growth responses in Arabidopsis involve the 26S proteasome subunit RPN12. The Plant Cell. 14: 17-32. PMID 11826296 DOI: 10.1105/Tpc.010381  0.627
2002 Fu H, Reis N, Lee Y, Glickman MH, Vierstra RD. Subunit interaction maps for the regulatory particle of the 26S proteasome and the COP9 signalosome Embo Journal. 20: 7096-7107. PMID 11742986 DOI: 10.1093/Emboj/20.24.7096  0.369
2002 Vierstra RD. Cyanophytochromes, Bacteriophytochromes, and Plant Phytochromes. Light-Regulated Kinases Related to Bacterial Two-Component Regulators Histidine Kinases in Signal Transduction. 273-295. DOI: 10.1016/B978-012372484-7/50014-X  0.329
2001 Bhoo SH, Davis SJ, Walker J, Karniol B, Vierstra RD. Bacteriophytochromes are photochromic histidine kinases using a biliverdin chromophore Nature. 414: 776-779. PMID 11742406 DOI: 10.1038/414776A  0.388
2001 Doelling JH, Yan N, Kurepa J, Walker J, Vierstra RD. The ubiquitin-specific protease UBP14 is essential for early embryo development in Arabidopsis thaliana Plant Journal. 27: 393-405. PMID 11576424 DOI: 10.1046/J.1365-313X.2001.01106.X  0.465
2001 Davis SJ, Bhoo SH, Durski AM, Walker JM, Vierstra RD. The heme-oxygenase family required for phytochrome chromophore biosynthesis is necessary for proper photomorphogenesis in higher plants. Plant Physiology. 126: 656-69. PMID 11402195 DOI: 10.1104/Pp.126.2.656  0.412
2001 Peng Z, Staub JM, Serino G, Kwok SF, Kurepa J, Bruce BD, Vierstra RD, Wei N, Deng XW. The cellular level of PR500, a protein complex related to the 19S regulatory particle of the proteasome, is regulated in response to stresses in plants. Molecular Biology of the Cell. 12: 383-92. PMID 11179422 DOI: 10.1091/Mbc.12.2.383  0.606
2001 Vener AV, Harms A, Sussman MR, Vierstra RD. Mass spectrometric resolution of reversible protein phosphorylation in photosynthetic membranes of Arabidopsis thaliana. The Journal of Biological Chemistry. 276: 6959-66. PMID 11113141 DOI: 10.1074/Jbc.M009394200  0.373
2000 Vierstra RD, Davis SJ. Bacteriophytochromes: New tools for understanding phytochrome signal transduction Seminars in Cell and Developmental Biology. 11: 511-521. PMID 11145881 DOI: 10.1006/Scdb.2000.0206  0.427
2000 Yan N, Doelling JH, Falbel TG, Durski AM, Vierstra RD. The ubiquitin-specific protease family from arabidopsis. AtUBP1 and 2 are required for the resistance to the amino acid analog canavanine Plant Physiology. 124: 1828-1843. PMID 11115897 DOI: 10.1104/Pp.124.4.1828  0.42
2000 Callis J, Vierstra RD. Protein degradation in signaling. Current Opinion in Plant Biology. 3: 381-6. PMID 11019805 DOI: 10.1016/S1369-5266(00)00100-X  0.626
1999 Davis SJ, Vener AV, Vierstra RD. Bacteriophytochromes: Phytochrome-like photoreceptors from nonphotosynthetic eubacteria Science. 286: 2517-2520. PMID 10617469 DOI: 10.1126/Science.286.5449.2517  0.438
1999 Vierstra RD, Callis J. Polypeptide tags, ubiquitous modifiers for plant protein regulation. Plant Molecular Biology. 41: 435-42. PMID 10608654 DOI: 10.1023/A:1006323317890  0.664
1999 Bates PW, Vierstra RD. UPL1 and 2, two 405 kDa ubiquitin-protein ligases from Arabidopsis thaliana related to the HECT-domain protein family Plant Journal. 20: 183-195. PMID 10571878 DOI: 10.1046/J.1365-313X.1999.00590.X  0.435
1999 Girod PA, Fu H, Zryd JP, Vierstra RD. Multiubiquitin chain binding subunit MCB1 (RPN10) of the 26S proteasome is essential for developmental progression in Physcomitrella patens Plant Cell. 11: 1457-1471. PMID 10449580 DOI: 10.1105/Tpc.11.8.1457  0.414
1999 Fu H, Doelling JH, Rubin DM, Vierstra RD. Structural and functional analysis of the six regulatory particle triple-A ATPase subunits from the Arabidopsis 26S proteasome Plant Journal. 18: 529-539. PMID 10417703 DOI: 10.1046/J.1365-313X.1999.00479.X  0.445
1999 Fu H, Girod PA, Doelling JH, Van Nocker S, Hochstrasser M, Finley D, Vierstra RD. Structure and functional analyses of the 26S proteasome subunits from plants Plant 26S proteasome Molecular Biology Reports. 26: 137-146. PMID 10363660 DOI: 10.1023/A:1006926322501  0.49
1999 Glickman MH, Rubin DM, Fu H, Larsen CN, Coux O, Wefes I, Pfeifer G, Cjeka Z, Vierstra R, Baumeister W, Fried V, Finley D. Functional analysis of the proteasome regulatory particle Molecular Biology Reports. 26: 21-28. PMID 10363642 DOI: 10.1023/A:1006928316738  0.35
1999 Davis SJ, Kurepa J, Vierstra RD. The Arabidopsis thaliana HY1 locus, required for phytochrome-chromophore biosynthesis, encodes a protein related to heme oxygenases Proceedings of the National Academy of Sciences of the United States of America. 96: 6541-6546. PMID 10339624 DOI: 10.1073/Pnas.96.11.6541  0.393
1999 Clough RC, Jordan-Beebe ET, Lohman KN, Marita JM, Walker JM, Gatz C, Vierstra RD. Sequences within both the N- and C-terminal domains of phytochrome A are required for PFR ubiquitination and degradation. The Plant Journal : For Cell and Molecular Biology. 17: 155-67. PMID 10074713 DOI: 10.1046/J.1365-313X.1999.00360.X  0.401
1999 Hondred D, Walker JM, Mathews DE, Vierstra RD. Use of ubiquitin fusions to augment protein expression in transgenic plants. Plant Physiology. 119: 713-24. PMID 9952468 DOI: 10.1104/Pp.119.2.713  0.449
1999 Sineshchekov VA, Clough RC, Jordan-Beebe ET, Vierstra RD. Fluorescence analysis of oat phyA deletion mutants expressed in tobacco suggests that the N-terminal domain determines the photochemical and spectroscopic distinctions between phyA′ and phyA″ Photochemistry and Photobiology. 69: 728-732. DOI: 10.1111/J.1751-1097.1999.Tb03354.X  0.34
1998 Gosink MM, Vierstra RD. Use of Staphylococcus aureus Protein-A subdomains as a tag for the sensitive detection of recombinant fusion proteins Biotechniques. 25: 374-378. PMID 9762432 DOI: 10.2144/98253Bm08  0.329
1998 Davis SJ, Vierstra RD. Soluble, highly fluorescent variants of green fluorescent protein (GFP) for use in higher plants Plant Molecular Biology. 36: 521-528. PMID 9484447 DOI: 10.1023/A:1005991617182  0.389
1998 Fu H, Sadis S, Rubin DM, Glickman M, Van Nocker S, Finley D, Vierstra RD. Multiubiquitin chain binding and protein degradation are mediated by distinct domains within the 26 S proteasome subunit Mcb1 Journal of Biological Chemistry. 273: 1970-1981. PMID 9442033 DOI: 10.1074/Jbc.273.4.1970  0.392
1997 Jordan ET, Marita JM, Clough RC, Vierstra RD. Characterization of regions within the N-terminal 6-kilodalton domain of phytochrome A that modulate its biological activity Plant Physiology. 115: 693-704. PMID 9342873 DOI: 10.1104/Pp.115.2.693  0.402
1997 Rubin DM, Van Nocker S, Glickman M, Coux O, Wefes I, Sadis S, Fu H, Goldberg A, Vierstra R, Finley D. ATPase and ubiquitin-binding proteins of the yeast proteasome Molecular Biology Reports. 24: 17-26. PMID 9228276 DOI: 10.1023/A:1006844305067  0.422
1997 Hatfield PM, Gosink MM, Carpenter TB, Vierstra RD. The ubiquitin-activating enzyme (E1) gene family in Arabidopsis thaliana Plant Journal. 11: 213-226. PMID 9076989 DOI: 10.1046/J.1365-313X.1997.11020213.X  0.424
1997 Rousseaux MC, Ballaré CL, Jordan ET, Vierstra RD. Directed overexpression of PHYA locally suppresses stem elongation and leaf senescence responses to far-red radiation Plant, Cell and Environment. 20: 1551-1558. DOI: 10.1046/J.1365-3040.1997.D01-51.X  0.397
1997 Clough RC, Vierstra RD. Phytochrome degradation Plant, Cell and Environment. 20: 713-721.  0.412
1996 Vierstra RD. Proteolysis in plants: Mechanisms and functions Plant Molecular Biology. 32: 275-302. PMID 8980483 DOI: 10.1007/Bf00039386  0.509
1996 Van Nocker S, Sadis S, Rubin DM, Glickman M, Fu H, Coux O, Wefes I, Finley D, Vierstra RD. The multiubiquitin-chain-binding protein Mcb1 is a component of the 26S proteasome in Saccharomyces cerevisiae and plays a nonessential, substrate- specific role in protein turnover Molecular and Cellular Biology. 16: 6020-6028. PMID 8887631 DOI: 10.1128/Mcb.16.11.6020  0.476
1996 Jordan ET, Cherry JR, Walker JM, Vierstra RD. The amino-terminus of phytochrome A contains two distinct functional domains. The Plant Journal : For Cell and Molecular Biology. 9: 243-57. PMID 8820609 DOI: 10.1046/J.1365-313X.1996.09020243.X  0.382
1996 Thoma S, Sullivan ML, Vierstra RD. Members of two gene families encoding ubiquitin-conjugating enzymes, AtUBC1-3 and AtUBC4-6, from Arabidopsis thaliana are differentially expressed Plant Molecular Biology. 31: 493-505. PMID 8790283 DOI: 10.1007/Bf00042223  0.368
1996 van Nocker S, Walker JM, Vierstra RD. The Arabidopsis thaliana UBC7/13/14 genes encode a family of multiubiquitin chain-forming E2 enzymes. The Journal of Biological Chemistry. 271: 12150-8. PMID 8647807 DOI: 10.1074/Jbc.271.21.12150  0.434
1996 Van Nocker S, Deveraux Q, Rechsteiner M, Vierstra RD. Arabidopsis MBP1 gene encodes a conserved ubiquitin recognition component of the 26S proteasome Proceedings of the National Academy of Sciences of the United States of America. 93: 856-860. PMID 8570648 DOI: 10.1073/Pnas.93.2.856  0.447
1996 Deveraux Q, van Nocker S, Mahaffey D, Vierstra R, Rechsteiner M. Inhibition of ubiquitin-mediated proteolysis by the Arabidopsis 26 S protease subunit S5a. The Journal of Biological Chemistry. 270: 29660-3. PMID 8530351 DOI: 10.1074/Jbc.270.50.29660  0.44
1996 Casal JJ, Clough RC, Vierstra RD. High-irradiance responses induced by far-red light in grass seedlings of the wild type or overexpressing phytochrome A Planta. 200: 132-137. DOI: 10.1007/Bf00196660  0.381
1995 Clough RC, Casal JJ, Jordan ET, Christou P, Vierstra RD. Expression of functional oat phytochrome A in transgenic rice Plant Physiology. 109: 1039-1045. PMID 8552709 DOI: 10.1104/Pp.109.3.1039  0.439
1995 Jensen JP, Bates PW, Yang M, Vierstra RD, Weissman AM. Identification of a family of closely related human ubiquitin conjugating enzymes Journal of Biological Chemistry. 270: 30408-30414. PMID 8530467 DOI: 10.1074/Jbc.270.51.30408  0.367
1995 Jordan ET, Hatfield PM, Hondred D, Talon M, Zeevaart JA, Vierstra RD. Phytochrome A overexpression in transgenic tobacco. Correlation of dwarf phenotype with high concentrations of phytochrome in vascular tissue and attenuated gibberellin levels Plant Physiology. 107: 797-805. PMID 7716243 DOI: 10.1104/Pp.107.3.797  0.36
1995 Callis J, Carpenter T, Sun CW, Vierstra RD. Structure and evolution of genes encoding polyubiquitin and ubiquitin-like proteins in Arabidopsis thaliana ecotype Columbia. Genetics. 139: 921-39. PMID 7713442  0.514
1995 Gosink MM, Vierstra RD. Redirecting the specificity of ubiquitination by modifying ubiquitin- conjugating enzymes Proceedings of the National Academy of Sciences of the United States of America. 92: 9117-9121. PMID 7568084 DOI: 10.1073/Pnas.92.20.9117  0.407
1995 Casal JJ, Sánchez RA, Boylan M, Vierstra RD, Quail PH. Is the far-red-absorbing form of Avena phytochrome A that is present at the end of the day able to sustain stem-growth inhibition during the night in transgenic tobacco and tomato seedlings? Planta. 197: 225-232. DOI: 10.1007/Bf00202641  0.58
1994 Sullivan ML, Carpenter TB, Vierstra RD. Homologues of wheat ubiquitin-conjugating enzymes - TaUBC1 and TaUBC4 are encoded by small multigene families in Arabidopsis thaliana Plant Molecular Biology. 24: 651-661. PMID 8155884 DOI: 10.1007/Bf00023561  0.391
1994 Ballaré CL, Scopel AL, Jordan ET, Vierstra RD. Signaling among neighboring plants and the development of size inequalities in plant populations Proceedings of the National Academy of Sciences of the United States of America. 91: 10094-10098. PMID 7937843 DOI: 10.1073/Pnas.91.21.10094  0.404
1994 Vierstra R. Genes encoding ubiquitin and related proteins Plant Molecular Biology Reporter. 12: S77-S78. DOI: 10.1007/Bf02671580  0.34
1994 Casal JJ, Sánchez RA, Vierstra RD. Avena phytochrome a overexpressed in transgenic tobacco seedlings differentially affects red/far-red reversible and very-low-fluence responses (cotyledon unfolding) during de-etiolation Planta. 192: 306-309. DOI: 10.1007/Bf00198564  0.323
1993 Cherry JR, Hondred D, Walker JM, Keller JM, Hershey HP, Vierstra RD. Carboxy-terminal deletion analysis of oat phytochrome A reveals the presence of separate domains required for structure and biological activity. The Plant Cell. 5: 565-75. PMID 8518556 DOI: 10.1105/Tpc.5.5.565  0.431
1993 van Nocker S, Vierstra RD. Two cDNAs from Arabidopsis thaliana encode putative RNA binding proteins containing glycine-rich domains Plant Molecular Biology. 21: 695-699. PMID 8448367 DOI: 10.1007/Bf00014552  0.404
1993 Scheffner M, Huibregtse JM, Vierstra RD, Howley PM. The HPV-16 E6 and E6-AP complex functions as a ubiquitin-protein ligase in the ubiquitination of p53 Cell. 75: 495-505. PMID 8221889 DOI: 10.1016/0092-8674(93)90384-3  0.322
1993 Girod PA, Carpenter TB, Van Mocker S, Sullivan ML, Vierstra RD. Homologs of the essential ubiquitin conjugating enzymes UBC1, 4, and 5 in yeast are encoded by a multigene family in Arabidopsis thaliana Plant Journal. 3: 545-552. PMID 8220461 DOI: 10.1046/J.1365-313X.1993.03040545.X  0.393
1993 Vierstra RD. Protein degradation in plants Annual Review of Plant Physiology and Plant Molecular Biology. 44: 385-410.  0.339
1993 Cherry JR, Hondred D, Walker JM, Keller JM, Hershey HP, Vierstra RD. Carboxy-terminal deletion analysis of oat phytochrome A reveals the presence of separate domains required for structure and biological activity Plant Cell. 5: 565-575.  0.32
1992 Cherry JR, Hondred D, Walker JM, Vierstra RD. Phytochrome requires the 6-kDa N-terminal domain for full biological activity Proceedings of the National Academy of Sciences of the United States of America. 89: 5039-5043. PMID 1594611 DOI: 10.1073/Pnas.89.11.5039  0.433
1992 Hondred D, Vierstra RD. Novel applications of the ubiquitin-dependent proteolytic pathway in plant genetic engineering Current Opinion in Biotechnology. 3: 147-151. PMID 1369380 DOI: 10.1016/0958-1669(92)90144-8  0.451
1992 Cook WJ, Jeffrey LC, Sullivan ML, Vierstra RD. Three-dimensional structure of a ubiquitin-conjugating enzyme (E2). The Journal of Biological Chemistry. 267: 15116-21. PMID 1321826 DOI: 10.2210/Pdb1Aak/Pdb  0.344
1991 Sharkey TD, Vassey TL, Vanderveer PJ, Vierstra RD. Carbon metabolism enzymes and photosynthesis in transgenic tobacco (Nicotiana tabacum L.) having excess phytochrome. Planta. 185: 287-96. PMID 24186408 DOI: 10.1007/Bf00201046  0.407
1991 Van Nocker S, Vierstra RD. Cloning and characterization of a 20-kDa ubiquitin carrier protein from wheat that catalyzes multiubiquitin chain formation in vitro Proceedings of the National Academy of Sciences of the United States of America. 88: 10297-10301. PMID 1658801 DOI: 10.1073/Pnas.88.22.10297  0.413
1991 Cherry JR, Hershey HP, Vierstra RD. Characterization of tobacco expressing functional oat phytochrome: Domains responsible for the rapid degradation of Pfr are conserved between monocots and dicots Plant Physiology. 96: 775-785. DOI: 10.1104/Pp.96.3.775  0.438
1990 Sullivan ML, Callis J, Vierstra RD. High performance liquid chromatography resolution of ubiquitin pathway enzymes from wheat germ. Plant Physiology. 94: 710-6. PMID 16667769 DOI: 10.1104/Pp.94.2.710  0.619
1990 Hatfield PM, Callis J, Vierstra RD. Cloning of ubiquitin activating enzyme from wheat and expression of a functional protein in Escherichia coli. The Journal of Biological Chemistry. 265: 15813-7. PMID 2203788  0.535
1990 Callis J, Raasch JA, Vierstra RD. Ubiquitin extension proteins of Arabidopsis thaliana. Structure, localization, and expression of their promoters in transgenic tobacco. The Journal of Biological Chemistry. 265: 12486-93. PMID 2165066  0.599
1989 Sullivan ML, Vierstra RD. A ubiquitin carrier protein from wheat germ is structurally and functionally similar to the yeast DNA repair enzyme encoded by RAD6 Proceedings of the National Academy of Sciences of the United States of America. 86: 9861-9865. PMID 2557633 DOI: 10.1073/Pnas.86.24.9861  0.403
1989 Callis J, Pollmann L, Shanklin J, Wettern M, Vierstra RD. Sequence of a cDNA from Chlamydomonas reinhardii encoding a ubiquitin 52 amino acid extension protein. Nucleic Acids Research. 17: 8377. PMID 2554258 DOI: 10.1093/Nar/17.20.8377  0.56
1989 Shanklin J, Jabben M, Vierstra RD. Partial purification and peptide mapping of ubiquitin-phytochrome conjugates from oat Biochemistry. 28: 6028-6034. DOI: 10.1021/Bi00440A046  0.359
1989 Hatfield PM, Vierstra RD. Ubiquitin-dependent proteolytic pathway in wheat germ: Isolation of multiple forms of ubiquitin-activating enzyme, E1 Biochemistry. 28: 735-742. DOI: 10.1021/Bi00428A048  0.365
1989 Keller JM, Shanklin J, Vierstra RD, Hershey HP. Expression of a functional monocotyledonous phytochrome in transgenic tobacco The Embo Journal. 8: 1005-1012. DOI: 10.1002/J.1460-2075.1989.Tb03467.X  0.425
1988 Vierstra RD, Sullivan ML. Hemin inhibits ubiquitin-dependent proteolysis in both a higher plant and yeast Biochemistry. 27: 3290-3295. PMID 2839230 DOI: 10.1021/Bi00409A025  0.456
1988 Burke TJ, Callis J, Vierstra RD. Characterization of a polyubiquitin gene from Arabidopsis thaliana. Molecular & General Genetics : Mgg. 213: 435-43. PMID 2460733 DOI: 10.1007/Bf00339613  0.593
1987 Mösinger E, Batschauer A, Vierstra R, Apel K, Schäfer E. Comparison of the effects of exogenous native phytochrome and in-vivo irradiation on in-vitro transcription in isolated nuclei from barley (Hordeum vulgare). Planta. 170: 505-14. PMID 24233013 DOI: 10.1007/Bf00402984  0.408
1987 Vierstra RD, Quail PH, Hahn TR, Song PS. Comparison of the protein conformations between different forms (Pr and Pfr) of native (124 kDa) and degraded (118/114 kDa) phytochromes from Avena sativa. Photochemistry and Photobiology. 45: 429-32. PMID 3562595 DOI: 10.1111/J.1751-1097.1987.Tb05398.X  0.597
1987 Vierstra RD. Ubiquitin, a key component in the degradation of plant proteins Physiologia Plantarum. 70: 103-106. DOI: 10.1111/J.1399-3054.1987.Tb08704.X  0.459
1987 Shanklin J, Jabben M, Vierstra RD. Red light-induced formation of ubiquitin-phytochrome conjugates: Identification of possible intermediates of phytochrome degradation Proceedings of the National Academy of Sciences of the United States of America. 84: 359-363. DOI: 10.1073/Pnas.84.2.359  0.445
1985 Jones AM, Vierstra RD, Daniels SM, Quail P. The role of separate molecular domains in the structure of phytochrome from etiolated Avena sativa L. Planta. 164: 501-6. PMID 24248223 DOI: 10.1007/Bf00395966  0.571
1985 Vierstra RD, Quail PH. Spectral Characterization and Proteolytic Mapping of Native 120-Kilodalton Phytochrome from Cucurbita pepo L. Plant Physiology. 77: 990-8. PMID 16664177 DOI: 10.1104/Pp.77.4.990  0.606
1985 Vierstra RD, Langan SM, Haas AL. Purification and initial characterization of ubiquitin from the higher plant, Avena sativa Journal of Biological Chemistry. 260: 12015-12021. PMID 2995356  0.332
1985 Ekelund NGA, Sundqvist C, Quail PH, Vierstra RD. CHROMOPHORE ROTATION IN 124-kD ALTON A vena sativa PHYTOCHROME AS MEASURED BY LIGHT-INDUCED CHANGES IN LINEAR DICHROISM Photochemistry and Photobiology. 41: 221-223. DOI: 10.1111/J.1751-1097.1985.Tb03476.X  0.526
1984 Vierstra RD, Cordonnier MM, Pratt LH, Quail PH. Native phytochrome: immunoblot analysis of relative molecular mass and in-vitro proteolytic degradation for several plant species. Planta. 160: 521-8. PMID 24258779 DOI: 10.1007/Bf00411140  0.589
1984 Hahn TR, Song PS, Quail PH, Vierstra RD. Tetranitromethane oxidation of phytochrome chromophore as a function of spectral form and molecular weight. Plant Physiology. 74: 755-8. PMID 16663505 DOI: 10.1104/Pp.74.4.755  0.531
1984 POFF KL, BURKART U, HAUDER D, VIERSTRA RD. THE TRANSMISSION OF COMBINED NEUTRAL DENSITY FILTERS Photochemistry and Photobiology. 39: 119-122. DOI: 10.1111/J.1751-1097.1984.Tb03415.X  0.541
1983 Vierstra RD, Quail PH. Photochemistry of 124 kilodalton Avena phytochrome in vitro. Plant Physiology. 72: 264-7. PMID 16662975 DOI: 10.1104/Pp.72.1.264  0.554
1983 Quail PH, Colbert JT, Hershey HP, Vierstra RD. Phytochrome: molecular properties and biogenesis Philosophical Transactions of the Royal Society B. 303: 387-402. DOI: 10.1098/Rstb.1983.0101  0.335
1983 Vierstra RD, Quail PH. Purification and initial characterization of 124-kilodalton phytochrome from Avena Biochemistry. 22: 2498-2505. DOI: 10.1021/Bi00279A029  0.571
1982 Vierstra RD, Quail PH. Proteolysis alters the spectral properties of 124 kdalton phytochrome from Avena. Planta. 156: 158-65. PMID 24272311 DOI: 10.1007/Bf00395430  0.562
1982 Vierstra RD, John TR, Poff KL. Kaempferol 3-O-Galactoside, 7-O-Rhamnoside is the Major Green Fluorescing Compound in the Epidermis of Vicia faba. Plant Physiology. 69: 522-5. PMID 16662240 DOI: 10.1104/Pp.69.2.522  0.577
1982 Vierstra RD, Quail PH. Native phytochrome: Inhibition of proteolysis yields a homogeneous monomer of 124 kilodaltons from Avena. Proceedings of the National Academy of Sciences of the United States of America. 79: 5272-6. PMID 16593222 DOI: 10.1073/Pnas.79.17.5272  0.562
1981 Vierstra RD, Poff KL. Role of carotenoids in the phototropic response of corn seedlings. Plant Physiology. 68: 798-801. PMID 16662001 DOI: 10.1104/Pp.68.4.798  0.637
1981 Vierstra RD, Poff KL. Effect of xenon on the excited States of phototropic receptor flavin in corn seedlings. Plant Physiology. 67: 996-8. PMID 16661808 DOI: 10.1104/Pp.67.5.996  0.574
1981 Vierstra RD, Poff KL. Mechanism of specific inhibition of phototropism by phenylacetic Acid in corn seedling. Plant Physiology. 67: 1011-5. PMID 16661774 DOI: 10.1104/Pp.67.5.1011  0.575
1980 Song P, Walker EB, Vierstra RD, Poff KL. ROSEOFLAVIN AS A BLUE LIGHT RECEPTOR ANALOG: SPECTROSCOPIC CHARACTERIZATION Photochemistry and Photobiology. 32: 393-398. DOI: 10.1111/J.1751-1097.1980.Tb03779.X  0.599
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