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Xing-Wang Deng - Publications

Affiliations: 
1989-2014 Biology Yale University, New Haven, CT 
 2014- Peking University, Beijing, Beijing Shi, China 
Area:
Plant Photomorphogenesis, Agricultural Biotechnology, Plant Hybrid Vigor, Applied Plant Bioinformatics
Website:
https://www.saas.pku.edu.cn/english/faculty/all_faculty_members_list/ed/5224.htm#:~:text=In%201989%2C%20he%20received%20the%20PhD%20degree,Peter%20Quail%E2%80%99s%20laboratory%20at%20UC%20Berkeley.
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286 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Ren Z, Gou R, Zhuo W, Chen Z, Yin X, Cao Y, Wang Y, Mi Y, Liu Y, Wang Y, Fan LM, Deng XW, Qian W. The MBD-ACD DNA methylation reader complex recruits MICRORCHIDIA6 to regulate rRNA gene expression in Arabidopsis. The Plant Cell. PMID 38092516 DOI: 10.1093/plcell/koad313  0.304
2023 Han X, Zhang Y, Lou Z, Li J, Wang Z, Gao C, Liu Y, Ren Z, Liu W, Li B, Pan W, Zhang H, Sang Q, Wan M, He H, ... Deng XW, et al. Time series single-cell transcriptional atlases reveal cell fate differentiation driven by light in Arabidopsis seedlings. Nature Plants. PMID 37903986 DOI: 10.1038/s41477-023-01544-4  0.391
2023 Chen J, Yu R, Li N, Deng Z, Zhang X, Zhao Y, Qu C, Yuan Y, Pan Z, Zhou Y, Li K, Wang J, Chen Z, Wang X, Wang X, ... ... Deng XW, et al. Amyloplast sedimentation repolarizes LAZYs to achieve gravity sensing in plants. Cell. PMID 37741279 DOI: 10.1016/j.cell.2023.09.014  0.632
2023 Li H, Zhou Y, Qin X, Peng J, Han R, Lv Y, Li C, Qi L, Qu GP, Yang L, Li Y, Terzaghi W, Li Z, Qin F, Gong Z, ... Deng XW, et al. Reconstitution of phytochrome A-mediated light modulation of the ABA signaling pathways in yeast. Proceedings of the National Academy of Sciences of the United States of America. 120: e2302901120. PMID 37590408 DOI: 10.1073/pnas.2302901120  0.374
2023 Cai Y, Liu Y, Fan Y, Li X, Yang M, Xu D, Wang H, Deng XW, Li J. MYB112 connects light and circadian clock signals to promote hypocotyl elongation in Arabidopsis. The Plant Cell. PMID 37335905 DOI: 10.1093/plcell/koad170  0.607
2022 Wang Y, Fan Y, Fan D, Zhou X, Jiao Y, Deng XW, Zhu D. The noncoding RNA HIDDEN TREASURE 1 promotes phytochrome B-dependent seed germination by repressing abscisic acid biosynthesis. The Plant Cell. PMID 36423345 DOI: 10.1093/plcell/koac334  0.37
2022 Wang J, Sun N, Zheng L, Zhang F, Xiang M, Chen H, Deng XW, Wei N. Brassinosteroids promote etiolated apical structures in darkness by amplifying the ethylene response via the EBF-EIN3/PIF3 circuit. The Plant Cell. PMID 36321994 DOI: 10.1093/plcell/koac316  0.685
2022 Lan H, Heng Y, Li J, Zhang M, Bian Y, Chu L, Jiang Y, Wang X, Xu D, Deng XW. COP1 SUPPRESSOR 6 represses the PIF4 and PIF5 action to promote light-inhibited hypocotyl growth. Journal of Integrative Plant Biology. PMID 36029156 DOI: 10.1111/jipb.13350  0.45
2022 Wang Y, Fan Y, Zhang Y, Zhou X, Zhang R, Wang Y, Sun Y, Zhang W, He Y, Deng XW, Zhu D. The DREAM complex antagonizes WDR5A to modulate histone H3K4me2/3 deposition for a subset of genome repression. Proceedings of the National Academy of Sciences of the United States of America. 119: e2206075119. PMID 35759663 DOI: 10.1073/pnas.2206075119  0.335
2022 Xu M, Wang X, Liu J, Jia A, Xu C, Deng XW, He G. Natural variation in the transcription factor Replumless contributes to both disease resistance and plant growth in Arabidopsis. Plant Communications. 100351. PMID 35752937 DOI: 10.1016/j.xplc.2022.100351  0.308
2022 Cui Y, Bian J, Lv Y, Li J, Deng XW, Liu X. Analysis of the Transcriptional Dynamics of Regulatory Genes During Peanut Pod Development Caused by Darkness and Mechanical Stress. Frontiers in Plant Science. 13: 904162. PMID 35693161 DOI: 10.3389/fpls.2022.904162  0.335
2022 Wang Y, Wang L, Guan Z, Chang H, Ma L, Shen C, Qiu L, Yan J, Zhang D, Li J, Deng XW, Yin P. Structural insight into UV-B-activated UVR8 bound to COP1. Science Advances. 8: eabn3337. PMID 35442727 DOI: 10.1126/sciadv.abn3337  0.329
2022 Cao J, Liang Y, Yan T, Wang X, Zhou H, Chen C, Zhang Y, Zhang B, Zhang S, Liao J, Cheng S, Chu J, Huang X, Xu D, Li J, ... Deng XW, et al. The photomorphogenic repressors BBX28 and BBX29 integrate light and brassinosteroid signaling to inhibit seedling development in Arabidopsis. The Plant Cell. PMID 35294019 DOI: 10.1093/plcell/koac092  0.568
2022 Yan T, Heng Y, Wang W, Li J, Deng XW. SWELLMAP 2, a phyB-Interacting Splicing Factor, Negatively Regulates Seedling Photomorphogenesis in . Frontiers in Plant Science. 13: 836519. PMID 35222493 DOI: 10.3389/fpls.2022.836519  0.425
2022 Hao C, Yang Y, Du J, Deng XW, Li L. The PCY-SAG14 phytocyanin module regulated by PIFs and miR408 promotes dark-induced leaf senescence in . Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35022242 DOI: 10.1073/pnas.2116623119  0.374
2021 Song Z, Heng Y, Bian Y, Xiao Y, Liu J, Zhao X, Jiang Y, Deng XW, Xu D. BBX11 promotes red light-mediated photomorphogenic development by modulating phyB-PIF4 signaling. Abiotech. 2: 117-130. PMID 36304757 DOI: 10.1007/s42994-021-00037-2  0.462
2021 Zhou H, Zhu W, Wang X, Bian Y, Jiang Y, Li J, Wang L, Yin P, Deng XW, Xu D. A missense mutation in WRKY32 converts its function from a positive regulator to a repressor of photomorphogenesis. The New Phytologist. PMID 34935148 DOI: 10.1111/nph.17932  0.446
2021 Zhao P, Zhang X, Gong Y, Wang D, Xu D, Wang N, Sun Y, Gao L, Liu SS, Deng XW, Kliebenstein DJ, Zhou X, Fang RX, Ye J. Red-light is an environmental effector for mutualism between begomovirus and its vector whitefly. Plos Pathogens. 17: e1008770. PMID 33428670 DOI: 10.1371/journal.ppat.1008770  0.414
2020 Zhao X, Heng Y, Wang X, Deng XW, Xu D. A Positive Feedback Loop of BBX11-BBX21-HY5 Promotes Photomorphogenic Development in . Plant Communications. 1: 100045. PMID 33367254 DOI: 10.1016/j.xplc.2020.100045  0.467
2020 Han X, Huang X, Deng XW. The Photomorphogenic Central Repressor COP1: Conservation and Functional Diversification during Evolution. Plant Communications. 1: 100044. PMID 33367240 DOI: 10.1016/j.xplc.2020.100044  0.559
2020 Wang J, Sun N, Zhang F, Yu R, Chen H, Deng XW, Wei N. Differential Regulation of Arabidopsis PP2C-D1 by SAUR17 and SAUR50 in Apical Hook Development and Cotyledon Opening. The Plant Cell. PMID 33093148 DOI: 10.1105/tpc.20.00283  0.648
2020 Liu H, Lin R, Deng XW. Photobiology: light signal transduction and photomorphogenesis. Journal of Integrative Plant Biology. PMID 32776700 DOI: 10.1111/jipb.13004  0.34
2020 Zhu W, Zhou H, Lin F, Zhao X, Jiang Y, Xu D, Deng XW. COLD-REGULATED GENE 27 Integrates Signals from Light and the Circadian Clock to Promote Hypocotyl Growth in Arabidopsis. The Plant Cell. PMID 32732313 DOI: 10.1105/tpc.20.00192  0.452
2020 Yang P, Wen Q, Yu R, Han X, Deng XW, Chen H. Light modulates the gravitropic responses through organ-specific PIFs and HY5 regulation of expression in . Proceedings of the National Academy of Sciences of the United States of America. PMID 32690706 DOI: 10.1073/pnas.2005871117  0.716
2020 Xu D, Deng XW. CBF-phyB-PIF Module Links Light and Low Temperature Signaling. Trends in Plant Science. PMID 32682648 DOI: 10.1016/j.tplants.2020.06.010  0.308
2020 Song Z, Yan T, Liu J, Bian Y, Heng Y, Lin F, Jiang Y, Deng XW, Xu D. BBX28/BBX29-HY5-BBX30/31 form a feedback loop to fine-tune photomorphogenic development. The Plant Journal : For Cell and Molecular Biology. PMID 32654323 DOI: 10.1111/tpj.14929  0.5
2020 Xu D, Wu D, Li XH, Jiang Y, Tian T, Chen Q, Ma L, Wang H, Deng XW, Li G. Light and Abscisic Acid Coordinately Regulate Greening of Seedlings. Plant Physiology. PMID 32414897 DOI: 10.1104/pp.20.00503  0.59
2020 Wang X, Yu R, Wang J, Lin Z, Han X, Deng Z, Fan L, He H, Deng XW, Chen H. The Asymmetric Expression of SAUR Genes Mediated by ARF7/19 Promotes the Gravitropism and Phototropism of Plant Hypocotyls. Cell Reports. 31: 107529. PMID 32320660 DOI: 10.1016/j.celrep.2020.107529  0.634
2020 Li J, Terzaghi W, Gong Y, Li C, Ling JJ, Fan Y, Qin N, Gong X, Zhu D, Deng XW. Modulation of BIN2 kinase activity by HY5 controls hypocotyl elongation in the light. Nature Communications. 11: 1592. PMID 32221308 DOI: 10.1038/s41467-020-15394-7  0.365
2020 Zhang H, Wang M, Li Y, Yan W, Chang Z, Ni H, Chen Z, Wu J, Xu C, Deng XW, Tang X. GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development. Journal of Integrative Plant Biology. PMID 32068333 DOI: 10.1111/jipb.12919  0.329
2020 Han X, Huang X, Deng XW. The Photomorphogenic Central Repressor COP1: Conservation and Functional Diversification during Evolution Plant Communications. 1: 100044. DOI: 10.1016/j.xplc.2020.100044  0.37
2019 Heng Y, Jiang Y, Zhao X, Zhou H, Wang X, Deng XW, Xu D. BBX4, a phyB-interacting and modulated regulator, directly interacts with PIF3 to fine tune red light-mediated photomorphogenesis. Proceedings of the National Academy of Sciences of the United States of America. PMID 31776262 DOI: 10.1073/pnas.1915149116  0.45
2019 Li H, Jiang S, Li C, Liu L, Lin Z, He H, Deng XW, Zhang Z, Wang X. The Hybrid Protein Interactome Contributes to Rice Heterosis as Epistatic Effects. The Plant Journal : For Cell and Molecular Biology. PMID 31736145 DOI: 10.1111/Tpj.14616  0.303
2019 Dong J, Chen H, Deng XW, Irish VF, Wei N. Phytochrome B induces intron retention and translational inhibition of PHYTOCHROME-INTERACTING FACTOR 3. Plant Physiology. PMID 31690709 DOI: 10.1104/pp.19.00835  0.715
2019 Yu X, Dong J, Deng Z, Jiang Y, Wu C, Qin X, Terzaghi W, Chen H, Dai M, Deng XW. PP6 phosphatases dephosphorylate PIF proteins to repress photomorphogenesis. Proceedings of the National Academy of Sciences of the United States of America. PMID 31527236 DOI: 10.1073/pnas.1907540116  0.823
2019 Han X, Chang X, Zhang Z, Chen H, He H, Zhong B, Deng XW. Origin and evolution of core components responsible for monitoring light environment changes during plant terrestrialization. Molecular Plant. PMID 31009752 DOI: 10.1016/j.molp.2019.04.006  0.68
2019 Dong J, Sun N, Yang J, Deng Z, Lan J, Qin G, He H, Deng XW, Irish VF, Chen H, Wei N. TCP4 and PIF3 antagonistically regulate organ-specific light induction of SAUR16/50 to modulate cotyledon opening during de-etiolation in Arabidopsis. The Plant Cell. PMID 30914467 DOI: 10.1105/Tpc.18.00803  0.683
2019 Ren H, Han J, Yang P, Mao W, Liu X, Qiu L, Qian C, Liu Y, Chen Z, Ouyang X, Chen X, Deng XW, Huang X. Two E3 ligases antagonistically regulate the UV-B response in . Proceedings of the National Academy of Sciences of the United States of America. PMID 30787186 DOI: 10.1073/pnas.1816268116  0.541
2019 Heng Y, Lin F, Jiang Y, Ding M, Yan T, Lan H, Zhou H, Zhao X, Xu D, Deng XW. B-box containing proteins BBX30 and BBX31, acting downstream of HY5, negatively regulate photomorphogenesis in Arabidopsis. Plant Physiology. PMID 30765480 DOI: 10.1104/pp.18.01244  0.472
2019 Hou Y, Von Arnim AG, Deng XW. A New Class of Arabidopsis Constitutive Photomorphogenic Genes Involved in Regulating Cotyledon Development. The Plant Cell. 5: 329-339. PMID 12271066 DOI: 10.1105/Tpc.5.3.329  0.518
2018 Wang H, Deng XW. . Genomics, Proteomics & Bioinformatics. PMID 30553883 DOI: 10.1016/j.gpb.2018.12.001  0.324
2018 Zhou Y, Yang L, Duan J, Cheng J, Shen Y, Wang X, Han R, Li H, Li Z, Wang L, Terzaghi W, Zhu D, Chen H, Deng XW, Li J. Hinge region of phyA plays an important role in regulating phyA function. Proceedings of the National Academy of Sciences of the United States of America. PMID 30478060 DOI: 10.1073/pnas.1813162115  0.657
2018 Wang X, Yang M, Ren D, Terzaghi W, Deng XW, He G. Cis-regulated alternative splicing divergence and its potential contribution to environmental responses in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. PMID 30375060 DOI: 10.1111/Tpj.14142  0.385
2018 Zhao X, Jiang Y, Li J, Huq E, Chen ZJ, Xu D, Deng XW. COP1 SUPPRESSOR 4 promotes seedling photomorphogenesis by repressing and expression in . Proceedings of the National Academy of Sciences of the United States of America. PMID 30352855 DOI: 10.1073/Pnas.1813171115  0.694
2018 Lin F, Jiang Y, Li J, Yan T, Fan L, Liang JS, Chen ZJ, Xu D, Deng XW. BBX28 negatively regulates photomorphogenesis by repressing HY5 activity and itself undergoes COP1-mediated degradation in Arabidopsis. The Plant Cell. PMID 30099385 DOI: 10.1105/Tpc.18.00226  0.471
2018 Shi H, Lyu M, Luo Y, Liu S, Li Y, He H, Wei N, Deng XW, Zhong S. Genome-wide regulation of light-controlled seedling morphogenesis by three families of transcription factors. Proceedings of the National Academy of Sciences of the United States of America. PMID 29844157 DOI: 10.1073/pnas.1803861115  0.475
2018 Song Q, Ando A, Xu D, Fang L, Zhang T, Huq E, Qiao H, Deng XW, Chen ZJ. Diurnal down-regulation of ethylene biosynthesis mediates biomass heterosis. Proceedings of the National Academy of Sciences of the United States of America. PMID 29735680 DOI: 10.1073/Pnas.1722068115  0.686
2018 Zhang S, Li C, Zhou Y, Wang X, Li H, Feng Z, Chen H, Qin G, Jin D, Terzaghi W, Gu H, Qu LJ, Kang D, Deng XW, Li J. TANDEM ZINC-FINGER/PLUS3 is a key component of phytochrome A signaling. The Plant Cell. PMID 29588390 DOI: 10.1105/Tpc.17.00677  0.716
2018 Jin D, Wu M, Li B, Bücker B, Keil P, Zhang S, Li J, Kang D, Liu J, Dong J, Deng XW, Irish V, Wei N. The COP9 Signalosome regulates seed germination by facilitating protein degradation of RGL2 and ABI5. Plos Genetics. 14: e1007237. PMID 29462139 DOI: 10.1371/journal.pgen.1007237  0.367
2017 Xu D, Jiang Y, Li J, Holm M, Deng XW. The B-box domain protein BBX21 promotes photomorphogenesis. Plant Physiology. PMID 29259103 DOI: 10.1104/pp.17.01305  0.74
2017 Wang Y, Li J, Deng XW, Zhu D. Arabidopsis noncoding RNA modulates seedling greening during deetiolation. Science China. Life Sciences. PMID 29143279 DOI: 10.1007/S11427-017-9187-9  0.52
2017 Dong J, Ni W, Yu R, Deng XW, Chen H, Wei N. Light-Dependent Degradation of PIF3 by SCF(EBF1/2) Promotes a Photomorphogenic Response in Arabidopsis. Current Biology : Cb. PMID 28736168 DOI: 10.1016/j.cub.2017.06.062  0.704
2017 Lin F, Xu D, Jiang Y, Chen H, Fan L, Holm M, Deng XW. Phosphorylation and negative regulation of CONSTITUTIVELY PHOTOMORPHOGENIC 1 by PINOID in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. PMID 28584104 DOI: 10.1073/pnas.1702984114  0.814
2017 Ling JJ, Li J, Zhu D, Deng XW. Noncanonical role of Arabidopsis COP1/SPA complex in repressing BIN2-mediated PIF3 phosphorylation and degradation in darkness. Proceedings of the National Academy of Sciences of the United States of America. PMID 28292892 DOI: 10.1073/pnas.1700850114  0.382
2016 Shi H, Shen X, Liu R, Xue C, Wei N, Deng XW, Zhong S. The Red Light Receptor Phytochrome B Directly Enhances Substrate-E3 Ligase Interactions to Attenuate Ethylene Responses. Developmental Cell. PMID 27889482 DOI: 10.1016/j.devcel.2016.10.020  0.436
2016 Xu D, Jiang Y, Li J, Lin F, Holm M, Deng XW. BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation. Proceedings of the National Academy of Sciences of the United States of America. PMID 27325768 DOI: 10.1073/pnas.1607687113  0.802
2016 Yu R, Yan W, Liang M, Dai X, Chen H, Sun Y, Deng XW, Chen X, He H, Chen L. Exploring the genetic characteristics of 93-11 and Nipponbare recombination inbred lines based on the GoldenGate SNP assay. Science China. Life Sciences. PMID 27311455 DOI: 10.1007/s11427-016-5082-x  0.523
2016 Li K, Yu R, Fan LM, Wei N, Chen H, Deng XW. DELLA-mediated PIF degradation contributes to coordination of light and gibberellin signalling in Arabidopsis. Nature Communications. 7: 11868. PMID 27282989 DOI: 10.1038/ncomms11868  0.701
2016 Sun N, Wang J, Gao Z, Dong J, He H, Terzaghi W, Wei N, Deng XW, Chen H. Arabidopsis SAURs are critical for differential light regulation of the development of various organs. Proceedings of the National Academy of Sciences of the United States of America. PMID 27118848 DOI: 10.1073/pnas.1604782113  0.698
2016 Yang M, Huang H, Zhang C, Wang Z, Su Y, Zhu P, Guo Y, Deng XW. Arabidopsis atypical kinase ABC1K1 is involved in red light-mediated development. Plant Cell Reports. PMID 27038938 DOI: 10.1007/s00299-016-1953-7  0.415
2016 Xu D, Zhu D, Deng XW. The role of COP1 in repression of photoperiodic flowering. F1000research. 5. PMID 26949521 DOI: 10.12688/f1000research.7346.1  0.44
2016 Yu Y, Wang J, Shi H, Gu J, Dong J, Deng XW, Huang R. Salt stress and ethylene antagonistically regulate nucleocytoplasmic partitioning of COP1 to control seed germination. Plant Physiology. PMID 26850275 DOI: 10.1104/pp.15.01724  0.305
2016 Dutilleul C, Ribeiro I, Blanc N, Nezames CD, Deng XW, Zglobicki P, Palacio Barrera AM, Atehortùa L, Courtois M, Labas V, Giglioli-Guivarc'h N, Ducos E. ASG2 is a farnesylated DWD protein that acts as ABA negative regulator in Arabidopsis. Plant, Cell & Environment. 39: 185-98. PMID 26147561 DOI: 10.1111/Pce.12605  0.363
2015 Xu D, Lin F, Jiang Y, Ling J, Hettiarachchi C, Tellgren-Roth C, Holm M, Wei N, Deng XW. Arabidopsis COP1 SUPPRESSOR 2 Represses COP1 E3 Ubiquitin Ligase Activity through Their Coiled-Coil Domains Association. Plos Genetics. 11: e1005747. PMID 26714275 DOI: 10.1371/journal.pgen.1005747  0.781
2015 Ma L, Tian T, Lin R, Deng XW, Wang H, Li G. Arabidopsis FHY3 and FAR1 Mediate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Molecular Plant. PMID 26714049 DOI: 10.1016/j.molp.2015.12.013  0.557
2015 Zhen G, Zhang L, Du Y, Yu R, Liu X, Cao F, Chang Q, Deng X, Xia M, He H. De novo assembly and comparative analysis of root transcriptomes from different varieties of Panax ginseng C. A. Meyer grown in different environments. Science China. Life Sciences. 58: 1099-110. PMID 26563176 DOI: 10.1007/S11427-015-4961-X  0.332
2015 Huang L, Zhang H, Zhang H, Deng XW, Wei N. HY5 regulates nitrite reductase 1 (NIR1) and ammonium transporter1;2 (AMT1;2) in Arabidopsis seedlings. Plant Science : An International Journal of Experimental Plant Biology. 238: 330-339. PMID 26259199 DOI: 10.1016/j.plantsci.2015.05.004  0.389
2015 Zhou D, Chen W, Lin Z, Chen H, Wang C, Li H, Yu R, Zhang F, Zhen G, Yi J, Li K, Liu Y, Terzaghi W, Tang X, He H, ... ... Deng XW, et al. Pedigree-based analysis of derivation of genome segments of an elite rice reveals key regions during its breeding. Plant Biotechnology Journal. PMID 26096084 DOI: 10.1111/pbi.12409  0.545
2015 Zhu L, Bu Q, Xu X, Paik I, Huang X, Hoecker U, Deng XW, Huq E. CUL4 forms an E3 ligase with COP1 and SPA to promote light-induced degradation of PIF1. Nature Communications. 6: 7245. PMID 26037329 DOI: 10.1038/Ncomms8245  0.748
2015 Dong J, Terzaghi W, Deng XW, Chen H. Multiple photomorphogenic repressors work in concert to regulate Arabidopsis seedling development. Plant Signaling & Behavior. 10: e1011934. PMID 25853593 DOI: 10.1080/15592324.2015.1011934  0.68
2015 Shi H, Wang X, Mo X, Tang C, Zhong S, Deng XW. Arabidopsis DET1 degrades HFR1 but stabilizes PIF1 to precisely regulate seed germination. Proceedings of the National Academy of Sciences of the United States of America. 112: 3817-22. PMID 25775589 DOI: 10.1073/Pnas.1502405112  0.452
2015 Li K, Gao Z, He H, Terzaghi W, Fan LM, Deng XW, Chen H. Arabidopsis DET1 represses photomorphogenesis in part by negatively regulating DELLA protein abundance in darkness. Molecular Plant. 8: 622-30. PMID 25704163 DOI: 10.1016/j.molp.2014.12.017  0.64
2014 Zhang H, Zhao X, Li J, Cai H, Deng XW, Li L. MicroRNA408 is critical for the HY5-SPL7 gene network that mediates the coordinated response to light and copper. The Plant Cell. 26: 4933-53. PMID 25516599 DOI: 10.1105/Tpc.114.127340  0.378
2014 Dong J, Tang D, Gao Z, Yu R, Li K, He H, Terzaghi W, Deng XW, Chen H. Arabidopsis DE-ETIOLATED1 represses photomorphogenesis by positively regulating phytochrome-interacting factors in the dark. The Plant Cell. 26: 3630-45. PMID 25248553 DOI: 10.1105/tpc.114.130666  0.706
2014 Kim SH, Kim H, Seo KI, Kim SH, Chung S, Huang X, Yang P, Deng XW, Lee JH. DWD HYPERSENSITIVE TO UV-B 1 is negatively involved in UV-B mediated cellular responses in Arabidopsis. Plant Molecular Biology. 86: 571-83. PMID 25193399 DOI: 10.1007/s11103-014-0247-0  0.408
2014 Chen F, Li B, Demone J, Charron JB, Shi X, Deng XW. Photoreceptor partner FHY1 has an independent role in gene modulation and plant development under far-red light Proceedings of the National Academy of Sciences of the United States of America. 111: 11888-11893. PMID 25071219 DOI: 10.1073/pnas.1412528111  0.417
2014 Huang X, Ouyang X, Deng XW. Beyond repression of photomorphogenesis: role switching of COP/DET/FUS in light signaling. Current Opinion in Plant Biology. 21: 96-103. PMID 25061897 DOI: 10.1016/j.pbi.2014.07.003  0.578
2014 Ouyang X, Huang X, Jin X, Chen Z, Yang P, Ge H, Li S, Deng XW. Coordinated photomorphogenic UV-B signaling network captured by mathematical modeling. Proceedings of the National Academy of Sciences of the United States of America. 111: 11539-44. PMID 25049395 DOI: 10.1073/pnas.1412050111  0.478
2014 Wang Y, Fan X, Lin F, He G, Terzaghi W, Zhu D, Deng XW. Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light. Proceedings of the National Academy of Sciences of the United States of America. 111: 10359-64. PMID 24982146 DOI: 10.1073/pnas.1409457111  0.375
2014 Jin D, Li B, Deng XW, Wei N. Plant COP9 signalosome subunit 5, CSN5. Plant Science : An International Journal of Experimental Plant Biology. 224: 54-61. PMID 24908506 DOI: 10.1016/J.Plantsci.2014.04.001  0.453
2014 Xu X, Paik I, Zhu L, Bu Q, Huang X, Deng XW, Huq E. PHYTOCHROME INTERACTING FACTOR1 Enhances the E3 Ligase Activity of CONSTITUTIVE PHOTOMORPHOGENIC1 to Synergistically Repress Photomorphogenesis in Arabidopsis. The Plant Cell. 26: 1992-2006. PMID 24858936 DOI: 10.1105/Tpc.114.125591  0.758
2014 Xu D, Lin F, Jiang Y, Huang X, Li J, Ling J, Hettiarachchi C, Tellgren-Roth C, Holm M, Deng XW. The RING-Finger E3 Ubiquitin Ligase COP1 SUPPRESSOR1 Negatively Regulates COP1 Abundance in Maintaining COP1 Homeostasis in Dark-Grown Arabidopsis Seedlings. The Plant Cell. 26: 1981-1991. PMID 24838976 DOI: 10.1105/tpc.114.124024  0.807
2014 Chen F, Li B, Li G, Charron JB, Dai M, Shi X, Deng XW. Arabidopsis Phytochrome A Directly Targets Numerous Promoters for Individualized Modulation of Genes in a Wide Range of Pathways. The Plant Cell. 26: 1949-1966. PMID 24794133 DOI: 10.1105/tpc.114.123950  0.778
2014 Huang X, Yang P, Ouyang X, Chen L, Deng XW. Photoactivated UVR8-COP1 module determines photomorphogenic UV-B signaling output in Arabidopsis. Plos Genetics. 10: e1004218. PMID 24651064 DOI: 10.1371/journal.pgen.1004218  0.488
2014 Xu D, Li J, Gangappa SN, Hettiarachchi C, Lin F, Andersson MX, Jiang Y, Deng XW, Holm M. Convergence of Light and ABA signaling on the ABI5 promoter. Plos Genetics. 10: e1004197. PMID 24586210 DOI: 10.1371/journal.pgen.1004197  0.85
2014 Irigoyen ML, Iniesto E, Rodriguez L, Puga MI, Yanagawa Y, Pick E, Strickland E, Paz-Ares J, Wei N, De Jaeger G, Rodriguez PL, Deng XW, Rubio V. Targeted degradation of abscisic acid receptors is mediated by the ubiquitin ligase substrate adaptor DDA1 in Arabidopsis. The Plant Cell. 26: 712-28. PMID 24563205 DOI: 10.1105/Tpc.113.122234  0.365
2014 Seo KI, Lee JH, Nezames CD, Zhong S, Song E, Byun MO, Deng XW. ABD1 is an Arabidopsis DCAF substrate receptor for CUL4-DDB1-based E3 ligases that acts as a negative regulator of abscisic acid signaling. The Plant Cell. 26: 695-711. PMID 24563203 DOI: 10.1105/tpc.113.119974  0.386
2014 Wang Y, Wang X, Deng W, Fan X, Liu TT, He G, Chen R, Terzaghi W, Zhu D, Deng XW. Genomic features and regulatory roles of intermediate-sized non-coding RNAs in Arabidopsis. Molecular Plant. 7: 514-27. PMID 24398630 DOI: 10.1093/mp/sst177  0.304
2014 Chen W, Chen H, Zheng T, Yu R, Terzaghi WB, Li Z, Deng XW, Xu J, He H. Highly efficient genotyping of rice biparental populations by GoldenGate assays based on parental resequencing. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 127: 297-307. PMID 24190103 DOI: 10.1007/s00122-013-2218-2  0.509
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2011 Li W, Zang B, Liu C, Lu L, Wei N, Cao K, Deng XW, Wang X. TSA1 interacts with CSN1/CSN and may be functionally involved in Arabidopsis seedling development in darkness. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 38: 539-46. PMID 22133685 DOI: 10.1016/J.Jgg.2011.08.007  0.395
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2011 Lozano-Durán R, Rosas-Díaz T, Gusmaroli G, Luna AP, Taconnat L, Deng XW, Bejarano ER. Geminiviruses subvert ubiquitination by altering CSN-mediated derubylation of SCF E3 ligase complexes and inhibit jasmonate signaling in Arabidopsis thaliana. The Plant Cell. 23: 1014-32. PMID 21441437 DOI: 10.1105/tpc.110.080267  0.379
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2009 Wang X, Li W, Piqueras R, Cao K, Deng XW, Wei N. Regulation of COP1 nuclear localization by the COP9 signalosome via direct interaction with CSN1. The Plant Journal : For Cell and Molecular Biology. 58: 655-67. PMID 19175768 DOI: 10.1111/J.1365-313X.2009.03805.X  0.309
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2008 Zhang Y, Xu W, Li Z, Deng XW, Wu W, Xue Y. F-box protein DOR functions as a novel inhibitory factor for abscisic acid-induced stomatal closure under drought stress in Arabidopsis,. Plant Physiology. 148: 2121-33. PMID 18835996 DOI: 10.1104/pp.108.126912  0.335
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2008 Zhang Y, Feng S, Chen F, Chen H, Wang J, McCall C, Xiong Y, Deng XW. Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes. The Plant Cell. 20: 1437-55. PMID 18552200 DOI: 10.1105/Tpc.108.058891  0.677
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2007 Jiao Y, Deng XW. A genome-wide transcriptional activity survey of rice transposable element-related genes. Genome Biology. 8: R28. PMID 17326825 DOI: 10.1186/Gb-2007-8-2-R28  0.587
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2006 Lee JH, Deng XW, Kim WT. Possible role of light in the maintenance of EIN3/EIL1 stability in Arabidopsis seedlings. Biochemical and Biophysical Research Communications. 350: 484-91. PMID 17011517 DOI: 10.1016/J.BBRC.2006.09.074  0.389
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2006 Dong L, Wang L, Zhang Y, Zhang Y, Deng X, Xue Y. An auxin-inducible F-box protein CEGENDUO negatively regulates auxin-mediated lateral root formation in Arabidopsis. Plant Molecular Biology. 60: 599-615. PMID 16525894 DOI: 10.1007/S11103-005-5257-5  0.425
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2006 Wang X, XU W, Ma L, Fu Z, Deng X, Li J, Wang Y. Requirement of KNAT1/BP for the Development of Abscission Zones in Arabidopsis thaliana Journal of Integrative Plant Biology. 48: 15-26. DOI: 10.1111/J.1744-7909.2005.00085.X-I1  0.419
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2005 Li L, Deng XW. It runs in the family: regulation of brassinosteroid signaling by the BZR1-BES1 class of transcription factors. Trends in Plant Science. 10: 266-8. PMID 15949759 DOI: 10.1016/J.TPLANTS.2005.04.002  0.348
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2005 Figueroa P, Gusmaroli G, Serino G, Habashi J, Ma L, Shen Y, Feng S, Bostick M, Callis J, Hellmann H, Deng XW. Arabidopsis has two redundant Cullin3 proteins that are essential for embryo development and that interact with RBX1 and BTB proteins to form multisubunit E3 ubiquitin ligase complexes in vivo. The Plant Cell. 17: 1180-95. PMID 15772280 DOI: 10.1105/Tpc.105.031989  0.742
2005 Rubio V, Deng XW. Phy tunes: phosphorylation status and phytochrome-mediated signaling. Cell. 120: 290-2. PMID 15707886 DOI: 10.1016/j.cell.2005.01.023  0.306
2005 Yang J, Lin R, Sullivan J, Hoecker U, Liu B, Xu L, Deng XW, Wang H. Light regulates COP1-mediated degradation of HFR1, a transcription factor essential for light signaling in Arabidopsis. The Plant Cell. 17: 804-21. PMID 15705947 DOI: 10.1105/Tpc.104.030205  0.607
2005 Rubio V, Shen Y, Saijo Y, Liu Y, Gusmaroli G, Dinesh-Kumar SP, Deng XW. An alternative tandem affinity purification strategy applied to Arabidopsis protein complex isolation. The Plant Journal : For Cell and Molecular Biology. 41: 767-78. PMID 15703063 DOI: 10.1111/J.1365-313X.2004.02328.X  0.335
2004 Wang H, Deng XW. Phytochrome signaling mechanism. The Arabidopsis Book. 3. PMID 22303226 DOI: 10.1199/tab.0074.1  0.373
2004 Wang L, Dong L, Zhang Y, Zhang Y, Wu W, Deng X, Xue Y. Genome-wide analysis of S-Locus F-box-like genes in Arabidopsis thaliana. Plant Molecular Biology. 56: 929-45. PMID 15821991 DOI: 10.1007/S11103-004-6236-Y  0.397
2004 Boccalandro HE, Rossi MC, Saijo Y, Deng X, Casal JJ. Promotion of photomorphogenesis by COP1 Plant Molecular Biology. 56: 905-915. PMID 15821989 DOI: 10.1007/S11103-004-5919-8  0.527
2004 Gusmaroli G, Feng S, Deng XW. The Arabidopsis CSN5A and CSN5B subunits are present in distinct COP9 signalosome complexes, and mutations in their JAMM domains exhibit differential dominant negative effects on development. The Plant Cell. 16: 2984-3001. PMID 15486099 DOI: 10.1105/tpc.104.025999  0.388
2004 Yanagawa Y, Sullivan JA, Komatsu S, Gusmaroli G, Suzuki G, Yin J, Ishibashi T, Saijo Y, Rubio V, Kimura S, Wang J, Deng XW. Arabidopsis COP10 forms a complex with DDB1 and DET1 in vivo and enhances the activity of ubiquitin conjugating enzymes. Genes & Development. 18: 2172-81. PMID 15342494 DOI: 10.1101/Gad.1229504  0.339
2004 Feng S, Shen Y, Sullivan JA, Rubio V, Xiong Y, Sun TP, Deng XW. Arabidopsis CAND1, an unmodified CUL1-interacting protein, is involved in multiple developmental pathways controlled by ubiquitin/proteasome-mediated protein Degradation. The Plant Cell. 16: 1870-82. PMID 15208391 DOI: 10.1105/tpc.021949  0.423
2004 Wei N, Deng XW. The COP9 signalosome. Annual Review of Cell and Developmental Biology. 19: 261-86. PMID 14570571 DOI: 10.1146/ANNUREV.CELLBIO.19.111301.112449  0.357
2004 Wang H, Ma L, Habashi J, Li J, Zhao H, Deng XW. Analysis of far-red light-regulated genome expression profiles of phytochrome A pathway mutants in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 32: 723-33. PMID 12472688 DOI: 10.1046/J.1365-313X.2002.01462.X  0.533
2004 Yamamoto YY, Deng X, Matsui M. Cip4, a new COP1 target, is a nucleus-localized positive regulator of Arabidopsis photomorphogenesis. The Plant Cell. 13: 399-411. PMID 11226193 DOI: 10.1105/Tpc.13.2.399  0.545
2003 Sullivan JA, Shirasu K, Deng XW. The diverse roles of ubiquitin and the 26S proteasome in the life of plants. Nature Reviews. Genetics. 4: 948-58. PMID 14631355 DOI: 10.1038/Nrg1228  0.389
2003 Jiao Y, Yang H, Ma L, Sun N, Yu H, Liu T, Gao Y, Gu H, Chen Z, Wada M, Gerstein M, Zhao H, Qu LJ, Deng XW. A genome-wide analysis of blue-light regulation of Arabidopsis transcription factor gene expression during seedling development. Plant Physiology. 133: 1480-93. PMID 14605227 DOI: 10.1104/Pp.103.029439  0.687
2003 Pan D, Sun N, Cheung KH, Guan Z, Ma L, Holford M, Deng X, Zhao H. PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis. Bmc Bioinformatics. 4: 56. PMID 14604444 DOI: 10.1186/1471-2105-4-56  0.34
2003 Saijo Y, Sullivan JA, Wang H, Yang J, Shen Y, Rubio V, Ma L, Hoecker U, Deng XW. The COP1-SPA1 interaction defines a critical step in phytochrome A-mediated regulation of HY5 activity. Genes & Development. 17: 2642-7. PMID 14597662 DOI: 10.1101/Gad.1122903  0.588
2003 Serino G, Deng XW. The COP9 signalosome: regulating plant development through the control of proteolysis. Annual Review of Plant Biology. 54: 165-82. PMID 14502989 DOI: 10.1146/Annurev.Arplant.54.031902.134847  0.77
2003 Lykke-Andersen K, Schaefer L, Menon S, Deng XW, Miller JB, Wei N. Disruption of the COP9 signalosome Csn2 subunit in mice causes deficient cell proliferation, accumulation of p53 and cyclin E, and early embryonic death. Molecular and Cellular Biology. 23: 6790-7. PMID 12972599  0.314
2003 Sullivan JA, Deng XW. From seed to seed: the role of photoreceptors in Arabidopsis development. Developmental Biology. 260: 289-97. PMID 12921732 DOI: 10.1016/S0012-1606(03)00212-4  0.358
2003 Wu P, Ma L, Hou X, Wang M, Wu Y, Liu F, Deng XW. Phosphate starvation triggers distinct alterations of genome expression in Arabidopsis roots and leaves. Plant Physiology. 132: 1260-71. PMID 12857808 DOI: 10.1104/pp.103.021022  0.304
2003 Peng Z, Shen Y, Feng S, Wang X, Chitteti BN, Vierstra RD, Deng XW. Evidence for a physical association of the COP9 signalosome, the proteasome, and specific SCF E3 ligases in vivo. Current Biology : Cb. 13: R504-5. PMID 12842023 DOI: 10.1016/S0960-9822(03)00439-1  0.463
2003 Feng S, Ma L, Wang X, Xie D, Dinesh-Kumar SP, Wei N, Deng XW. The COP9 signalosome interacts physically with SCF COI1 and modulates jasmonate responses. The Plant Cell. 15: 1083-94. PMID 12724535 DOI: 10.1105/Tpc.010207  0.382
2003 Wang X, Feng S, Nakayama N, Crosby WL, Irish V, Deng XW, Wei N. The COP9 signalosome interacts with SCF UFO and participates in Arabidopsis flower development. The Plant Cell. 15: 1071-82. PMID 12724534 DOI: 10.1105/Tpc.009936  0.346
2003 Wang H, Deng XW. Dissecting the phytochrome A-dependent signaling network in higher plants. Trends in Plant Science. 8: 172-8. PMID 12711229 DOI: 10.1016/S1360-1385(03)00049-9  0.584
2003 Serino G, Su H, Peng Z, Tsuge T, Wei N, Gu H, Deng XW. Characterization of the last subunit of the Arabidopsis COP9 signalosome: implications for the overall structure and origin of the complex. The Plant Cell. 15: 719-31. PMID 12615944 DOI: 10.1105/Tpc.009092  0.735
2003 Ma L, Zhao H, Deng XW. Analysis of the mutational effects of the COP/DET/FUS loci on genome expression profiles reveals their overlapping yet not identical roles in regulating Arabidopsis seedling development. Development (Cambridge, England). 130: 969-81. PMID 12538522 DOI: 10.1242/DEV.00281  0.334
2003 Ma L, Gao Y, Qu L, Chen Z, Li J, Zhao H, Deng XW. Genomic evidence for COP1 as a repressor of light-regulated gene expression and development in Arabidopsis. The Plant Cell. 14: 2383-98. PMID 12368493 DOI: 10.1105/Tpc.004416  0.367
2002 Yi C, Wang H, Wei N, Deng XW. An initial biochemical and cell biological characterization of the mammalian homologue of a central plant developmental switch, COP1. Bmc Cell Biology. 3: 30. PMID 12466024 DOI: 10.1186/1471-2121-3-30  0.8
2002 Schwechheimer C, Serino G, Deng XW. Multiple ubiquitin ligase-mediated processes require COP9 signalosome and AXR1 function. The Plant Cell. 14: 2553-63. PMID 12368504 DOI: 10.1105/Tpc.003434  0.821
2002 Fry RC, Habashi J, Okamoto H, Deng XW. Characterization of a strong dominant phytochrome A mutation unique to phytochrome A signal propagation. Plant Physiology. 130: 457-65. PMID 12226524 DOI: 10.1104/Pp.005264  0.499
2002 Yadav V, Kundu S, Chattopadhyay D, Negi P, Wei N, Deng X, Chattopadhyay S. Light regulated modulation of Z‐box containing promoters by photoreceptors and downstream regulatory components, COP1 and HY5, in Arabidopsis Plant Journal. 31: 741-753. PMID 12220265 DOI: 10.1046/J.1365-313X.2002.01395.X  0.727
2002 Liu Y, Schiff M, Serino G, Deng XW, Dinesh-Kumar SP. Role of SCF ubiquitin-ligase and the COP9 signalosome in the N gene-mediated resistance response to Tobacco mosaic virus. The Plant Cell. 14: 1483-96. PMID 12119369 DOI: 10.1105/Tpc.002493  0.759
2002 Hardtke CS, Okamoto H, Stoop-Myer C, Deng XW. Biochemical evidence for ubiquitin ligase activity of the Arabidopsis COP1 interacting protein 8 (CIP8). The Plant Journal : For Cell and Molecular Biology. 30: 385-94. PMID 12028569  0.681
2002 Holm M, Ma LG, Qu LJ, Deng XW. Two interacting bZIP proteins are direct targets of COP1-mediated control of light-dependent gene expression in Arabidopsis. Genes & Development. 16: 1247-59. PMID 12023303 DOI: 10.1101/Gad.969702  0.804
2002 Wang H, Deng XW. Arabidopsis FHY3 defines a key phytochrome A signaling component directly interacting with its homologous partner FAR1. The Embo Journal. 21: 1339-49. PMID 11889039 DOI: 10.1093/EMBOJ/21.6.1339  0.526
2002 Suzuki G, Yanagawa Y, Kwok SF, Matsui M, Deng XW. Arabidopsis COP10 is a ubiquitin-conjugating enzyme variant that acts together with COP1 and the COP9 signalosome in repressing photomorphogenesis. Genes & Development. 16: 554-9. PMID 11877375 DOI: 10.1101/Gad.964602  0.456
2002 Ma L, Li J, Qu L, Hager J, Chen Z, Zhao H, Deng XW. Light control of Arabidopsis development entails coordinated regulation of genome expression and cellular pathways. The Plant Cell. 13: 2589-607. PMID 11752374 DOI: 10.1105/Tpc.010229  0.361
2001 Peng Z, Serino G, Deng XW. Molecular characterization of subunit 6 of the COP9 signalosome and its role in multifaceted developmental processes in Arabidopsis. The Plant Cell. 13: 2393-407. PMID 11701877 DOI: 10.1105/Tpc.010248  0.751
2001 Peng Z, Serino G, Deng XW. A role of Arabidopsis COP9 signalosome in multifaceted developmental processes revealed by the characterization of its subunit 3. Development (Cambridge, England). 128: 4277-88. PMID 11684663  0.758
2001 Schwechheimer C, Deng XW. COP9 signalosome revisited: a novel mediator of protein degradation. Trends in Cell Biology. 11: 420-6. PMID 11567875 DOI: 10.1016/S0962-8924(01)02091-8  0.729
2001 Wang H, Ma LG, Li JM, Zhao HY, Deng XW. Direct interaction of Arabidopsis cryptochromes with COP1 in light control development. Science (New York, N.Y.). 294: 154-8. PMID 11509693 DOI: 10.1126/SCIENCE.1063630  0.454
2001 Okamoto H, Matsui M, Deng XW. Overexpression of the heterotrimeric G-protein alpha-subunit enhances phytochrome-mediated inhibition of hypocotyl elongation in Arabidopsis. The Plant Cell. 13: 1639-52. PMID 11449056 DOI: 10.1105/TPC.010008  0.422
2001 Schwechheimer C, Serino G, Callis J, Crosby WL, Lyapina S, Deshaies RJ, Gray WM, Estelle M, Deng XW. Interactions of the COP9 signalosome with the E3 ubiquitin ligase SCFTIRI in mediating auxin response. Science (New York, N.Y.). 292: 1379-82. PMID 11337587 DOI: 10.1126/Science.1059776  0.814
2001 Holm M, Hardtke CS, Gaudet R, Deng XW. Identification of a structural motif that confers specific interaction with the WD40 repeat domain of Arabidopsis COP1. The Embo Journal. 20: 118-27. PMID 11226162 DOI: 10.1093/Emboj/20.1.118  0.649
2001 Peng Z, Staub JM, Serino G, Kwok SF, Kurepa J, Bruce BD, Vierstra RD, Wei N, Deng XW. The cellular level of PR500, a protein complex related to the 19S regulatory particle of the proteasome, is regulated in response to stresses in plants. Molecular Biology of the Cell. 12: 383-92. PMID 11179422 DOI: 10.1091/Mbc.12.2.383  0.791
2001 Okamoto H, Qu L, Deng X. Does EID1 Aid the Fine-Tuning of Phytochrome A Signal Transduction in Arabidopsis? The Plant Cell. 13: 1983-1986. DOI: 10.1105/Tpc.13.9.1983  0.369
2000 Schwechheimer C, Deng XW. The COP/DET/FUS proteins-regulators of eukaryotic growth and development. Seminars in Cell & Developmental Biology. 11: 495-503. PMID 11145879 DOI: 10.1006/Scdb.2000.0203  0.717
2000 Hardtke CS, Deng XW. The cell biology of the COP/DET/FUS proteins. Regulating proteolysis in photomorphogenesis and beyond? Plant Physiology. 124: 1548-57. PMID 11115873 DOI: 10.1104/Pp.124.4.1548  0.708
2000 Osterlund MT, Wei N, Deng XW. The roles of photoreceptor systems and the COP1-targeted destabilization of HY5 in light control of Arabidopsis seedling development. Plant Physiology. 124: 1520-4. PMID 11115869 DOI: 10.1104/Pp.124.4.1520  0.822
2000 Hardtke CS, Gohda K, Osterlund MT, Oyama T, Okada K, Deng XW. HY5 stability and activity in arabidopsis is regulated by phosphorylation in its COP1 binding domain. The Embo Journal. 19: 4997-5006. PMID 10990463 DOI: 10.1093/Emboj/19.18.4997  0.834
2000 Kang D, Wang X, Cao K, Sun C, Deng XW, Wei N. A gain-of-function phenotype conferred by over-expression of functional subunits of the COP9 signalosome in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 23: 597-608. PMID 10972886 DOI: 10.1046/J.1365-313X.2000.00824.X  0.418
2000 Osterlund MT, Hardtke CS, Wei N, Deng XW. Targeted destabilization of HY5 during light-regulated development of Arabidopsis. Nature. 405: 462-6. PMID 10839542 DOI: 10.1038/35013076  0.851
2000 Yamamoto YY, Puente P, Deng XW. An Arabidopsis cotyledon-specific albino locus: a possible role in 16S rRNA maturation. Plant & Cell Physiology. 41: 68-76. PMID 10750710 DOI: 10.1093/Pcp/41.1.68  0.443
2000 Leyser O, Deng X. Cell signalling and gene regulation: New directions in plant signalling Current Opinion in Plant Biology. 3: 351-352. DOI: 10.1016/S1369-5266(00)00095-9  0.398
1999 Stoop-Myer C, Torii KU, McNellis TW, Coleman JE, Deng XW. Short communication: the N-terminal fragment of Arabidopsis photomorphogenic repressor COP1 maintains partial function and acts in a concentration-dependent manner. The Plant Journal : For Cell and Molecular Biology. 20: 713-7. PMID 10652143 DOI: 10.1046/J.1365-313X.1999.00639.X  0.655
1999 Holm M, Deng XW. Structural organization and interactions of COP1, a light-regulated developmental switch Plant Molecular Biology. 41: 151-158. PMID 10579483 DOI: 10.1023/A:1006324115086  0.417
1999 Yamamoto N, Deng XW. Protein nucleocytoplasmic transport and its light regulation in plants. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 4: 489-500. PMID 10526236 DOI: 10.1046/j.1365-2443.1999.00282.x  0.426
1999 Serino G, Tsuge T, Kwok S, Matsui M, Wei N, Deng XW. Arabidopsis cop8 and fus4 mutations define the same gene that encodes subunit 4 of the COP9 signalosome. The Plant Cell. 11: 1967-80. PMID 10521526 DOI: 10.1105/Tpc.11.10.1967  0.744
1999 Torii KU, Stoop-Myer CD, Okamoto H, Coleman JE, Matsui M, Deng XW. The RING finger motif of photomorphogenic repressor COP1 specifically interacts with the RING-H2 motif of a novel Arabidopsis protein. The Journal of Biological Chemistry. 274: 27674-81. PMID 10488108 DOI: 10.1074/Jbc.274.39.27674  0.604
1999 Deng XW, Quail PH. Signalling in light-controlled development. Seminars in Cell & Developmental Biology. 10: 121-9. PMID 10441064 DOI: 10.1006/Scdb.1999.0287  0.618
1999 Wang H, Kang D, Deng XW, Wei N. Evidence for functional conservation of a mammalian homologue of the light-responsive plant protein COP1. Current Biology : Cb. 9: 711-4. PMID 10395541 DOI: 10.1016/S0960-9822(99)80314-5  0.563
1999 Wei N, Deng XW. Making sense of the COP9 signalosome: A regulatory protein complex conserved from Arabidopsis to human Trends in Genetics. 15: 98-103. PMID 10203806 DOI: 10.1016/S0168-9525(98)01670-9  0.362
1999 Osterlund MT, Ang LH, Deng XW. The role of COP1 in repression of Arabidopsis photomorphogenic development. Trends in Cell Biology. 9: 113-8. PMID 10201077 DOI: 10.1016/S0962-8924(99)01499-3  0.827
1999 Kwok SF, Staub JM, Deng XW. Characterization of two subunits of Arabidopsis 19S proteasome regulatory complex and its possible interaction with the COP9 complex. Journal of Molecular Biology. 285: 85-95. PMID 9878390 DOI: 10.1006/Jmbi.1998.2315  0.399
1998 Karniol B, Yahalom A, Kwok S, Tsuge T, Matsui M, Deng XW, Chamovitz DA. The Arabidopsis homologue of an eIF3 complex subunit associates with the COP9 complex. Febs Letters. 439: 173-9. PMID 9849901 DOI: 10.1016/S0014-5793(98)01367-2  0.67
1998 Osterlund MT, Deng XW. Multiple photoreceptors mediate the light-induced reduction of GUS-COP1 from Arabidopsis hypocotyl nuclei. The Plant Journal : For Cell and Molecular Biology. 16: 201-8. PMID 9839465 DOI: 10.1046/J.1365-313X.1998.00290.X  0.83
1998 Kwok SF, Solano R, Tsuge T, Chamovitz DA, Ecker JR, Matsui M, Deng XW. Arabidopsis homologs of a c-Jun coactivator are present both in monomeric form and in the COP9 complex, and their abundance is differentially affected by the pleiotropic cop/det/fus mutations Plant Cell. 10: 1779-1790. PMID 9811788 DOI: 10.1105/Tpc.10.11.1779  0.742
1998 Torii KU, McNellis TW, Deng XW. Functional dissection of Arabidopsis COP1 reveals specific roles of its three structural modules in light control of seedling development. The Embo Journal. 17: 5577-87. PMID 9755158 DOI: 10.1093/Emboj/17.19.5577  0.692
1998 Chattopadhyay S, Puente P, Deng XW, Wei N. Combinatorial interaction of light-responsive elements plays a critical role in determining the response characteristics of light-regulated promoters in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 15: 69-77. PMID 9744096 DOI: 10.1046/J.1365-313X.1998.00180.X  0.489
1998 Wei N, Tsuge T, Serino G, Dohmae N, Takio K, Matsui M, Deng XW. The COP9 complex is conserved between plants and mammals and is related to the 26S proteasome regulatory complex. Current Biology : Cb. 8: 919-22. PMID 9707402 DOI: 10.1016/S0960-9822(07)00372-7  0.742
1998 Yamamoto YY, Matsui M, Ang LH, Deng XW. Role of a COP1 interactive protein in mediating light-regulated gene expression in arabidopsis. The Plant Cell. 10: 1083-94. PMID 9668129 DOI: 10.1105/Tpc.10.7.1083  0.545
1998 Ang LH, Chattopadhyay S, Wei N, Oyama T, Okada K, Batschauer A, Deng XW. Molecular interaction between COP1 and HY5 defines a regulatory switch for light control of Arabidopsis development. Molecular Cell. 1: 213-22. PMID 9659918 DOI: 10.1016/S1097-2765(00)80022-2  0.511
1998 Chattopadhyay S, Ang LH, Puente P, Deng XW, Wei N. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The Plant Cell. 10: 673-83. PMID 9596629 DOI: 10.1105/Tpc.10.5.673  0.514
1998 Yamamoto YY, Deng X. A New Vector Set for GAL4-Dependent Transactivation Assay in Plants. Plant Biotechnology. 15: 217-220. DOI: 10.5511/Plantbiotechnology.15.217  0.409
1998 Wei N, Deng X. Characterization and Purification of the Mammalian COP9 Complex, a Conserved Nuclear Regulator Initially Identified as a Repressor of Photomorphogenesis in Higher Plants Photochemistry and Photobiology. 68: 237-241. DOI: 10.1111/J.1751-1097.1998.Tb02495.X  0.395
1998 Yamamoto YY, Matsui M, Deng X. Positive feedback in plant signaling pathways Trends in Plant Science. 3: 374-375. DOI: 10.1016/S1360-1385(98)01317-X  0.373
1997 von Arnim AG, Osterlund MT, Kwok SF, Deng XW. Genetic and developmental control of nuclear accumulation of COP1, a repressor of photomorphogenesis in Arabidopsis. Plant Physiology. 114: 779-88. PMID 9232869 DOI: 10.1104/Pp.114.3.779  0.825
1997 Staub JM, Deng XW. Light signal transduction in plants. Photochemistry and Photobiology. 64: 897-905. PMID 8972630 DOI: 10.1111/J.1751-1097.1996.Tb01853.X  0.487
1997 Staub JM, Wei N, Deng XW. Evidence for FUS6 as a component of the nuclear-localized COP9 complex in Arabidopsis. The Plant Cell. 8: 2047-56. PMID 8953769 DOI: 10.1105/Tpc.8.11.2047  0.5
1997 von Arnim A, Deng XW. A role for transcriptional repression during light control of plant development. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 18: 905-10. PMID 8939068 DOI: 10.1002/Bies.950181109  0.523
1997 CHAMOVITZ DA, DENG X. The COP9 complex: a link between photomorphogenesis and general developmental regulation? Plant, Cell and Environment. 20: 734-739. DOI: 10.1046/j.1365-3040.1997.d01-97.x  0.654
1997 TORII KU, DENG XW. The role of COP1 in light control of Arabidopsis seedling development Plant, Cell and Environment. 20: 728-733. DOI: 10.1046/j.1365-3040.1997.d01-115.x  0.626
1996 Von Arnim A, Deng XW. LIGHT CONTROL OF SEEDLING DEVELOPMENT. Annual Review of Plant Physiology and Plant Molecular Biology. 47: 215-243. PMID 15012288 DOI: 10.1146/annurev.arplant.47.1.215  0.74
1996 McNellis TW, Torii KU, Deng XW. Expression of an N-terminal fragment of COP1 confers a dominant-negative effect on light-regulated seedling development in Arabidopsis. The Plant Cell. 8: 1491-503. PMID 8837504 DOI: 10.1105/Tpc.8.9.1491  0.68
1996 Kwok SF, Piekos B, Misera S, Deng XW. A complement of ten essential and pleiotropic arabidopsis COP/DET/FUS genes is necessary for repression of photomorphogenesis in darkness. Plant Physiology. 110: 731-42. PMID 8819865 DOI: 10.1104/pp.110.3.731  0.341
1996 Chamovitz DA, Wei N, Osterlund MT, von Arnim AG, Staub JM, Matsui M, Deng XW. The COP9 complex, a novel multisubunit nuclear regulator involved in light control of a plant developmental switch. Cell. 86: 115-21. PMID 8689678 DOI: 10.1016/S0092-8674(00)80082-3  0.829
1996 Chamovitz DA, Deng X, Lam E. Light signaling in plants Critical Reviews in Plant Sciences. 15: 455-478. DOI: 10.1080/07352689609382367  0.68
1996 Puente P, Wei N, Deng XW. Combinatorial interplay of promoter elements constitutes the minimal determinants for light and developmental control of gene expression in Arabidopsis. The Embo Journal. 15: 3732-3743. DOI: 10.1002/j.1460-2075.1996.tb00743.x  0.312
1995 McNellis TW, Deng XW. Light control of seedling morphogenetic pattern Plant Cell. 7: 1749-1761. PMID 8535132 DOI: 10.1105/Tpc.7.11.1749  0.474
1995 Matsui M, Stoop CD, von Arnim AG, Wei N, Deng XW. Arabidopsis COP1 protein specifically interacts in vitro with a cytoskeleton-associated protein, CIP1. Proceedings of the National Academy of Sciences of the United States of America. 92: 4239-43. PMID 7753789 DOI: 10.1073/Pnas.92.10.4239  0.531
1995 Chamovitz DA, Deng X. The novel components of the Arabidopsis light signaling pathway may define a group of general developmental regulators shared by both animal and plant kingdoms. Cell. 82: 353-354. PMID 7634324 DOI: 10.1016/0092-8674(95)90423-9  0.723
1995 Torii KU, Deng X. Regulation of plant form: Identification of a molecule controlling cell expansion Bioessays. 17: 383-386. DOI: 10.1002/Bies.950170504  0.655
1994 Deng XW. Fresh view of light signal transduction in plants Cell. 76: 423-426. PMID 8313465 DOI: 10.1016/0092-8674(94)90107-4  0.52
1994 McNellis TW, von Arnim AG, Araki T, Komeda Y, Miséra S, Deng XW. Genetic and molecular analysis of an allelic series of cop1 mutants suggests functional roles for the multiple protein domains. The Plant Cell. 6: 487-500. PMID 8205001 DOI: 10.1105/Tpc.6.4.487  0.406
1994 Wei N, Kwok SF, Von Arnim AG, Lee A, McNellis TW, Piekos B, Deng XW. Arabidopsis COP8, COP10, and COP11 genes are involved in repression of photomorphogenic development in darkness Plant Cell. 6: 629-643. PMID 8038603 DOI: 10.1105/Tpc.6.5.629  0.377
1994 Ang LH, Deng XW. Regulatory hierarchy of photomorphogenic loci: allele-specific and light-dependent interaction between the HY5 and COP1 loci. The Plant Cell. 6: 613-28. PMID 8038602 DOI: 10.1105/Tpc.6.5.613  0.409
1994 Wei N, Chamovitz DA, Deng XW. Arabidopsis COP9 is a component of a novel signaling complex mediating light control of development. Cell. 78: 117-24. PMID 8033203 DOI: 10.1016/0092-8674(94)90578-9  0.76
1994 Arnim AGv, Deng X. Light inactivation of arabidopsis photomorphogenic repressor COP1 involves a cell-specific regulation of its nucleocytoplasmic partitioning Cell. 79: 1035-1045. PMID 8001131 DOI: 10.1016/0092-8674(94)90034-5  0.458
1994 McNellis TW, Von Arnim AG, Deng XW. Overexpression of arabidopsis COP1 results in partial suppression of light-mediated development: Evidence for a light-inactivable repressor of photomorphogenesis Plant Cell. 6: 1391-1400. PMID 7994173 DOI: 10.1105/Tpc.6.10.1391  0.421
1992 Tonkyn JC, Deng XW, Gruissem W. Regulation of Plastid Gene Expression during Photooxidative Stress. Plant Physiology. 99: 1406-15. PMID 16669052 DOI: 10.1104/Pp.99.4.1406  0.564
1992 Wei N, Deng XW. COP9: A new genetic locus involved in light-regulated development and gene expression in Arabidopsis Plant Cell. 4: 1507-1518. PMID 1467650 DOI: 10.1105/Tpc.4.12.1507  0.507
1992 Deng XW, Matsui M, Wei N, Wagner D, Chu AM, Feldmann KA, Quail PH. COP1, an Arabidopsis regulatory gene, encodes a protein with both a zinc-binding motif and a G beta homologous domain. Cell. 71: 791-801. PMID 1423630 DOI: 10.1016/0092-8674(92)90555-Q  0.739
1991 Deng XW, Caspar T, Quail PH. cop1: a regulatory locus involved in light-controlled development and gene expression in Arabidopsis. Genes & Development. 5: 1172-82. PMID 2065972 DOI: 10.1101/Gad.5.7.1172  0.689
1991 Bruce WB, Deng XW, Quail PH. A negatively acting DNA sequence element mediates phytochrome-directed repression of phyA gene transcription. The Embo Journal. 10: 3015-24. PMID 1915276 DOI: 10.1002/J.1460-2075.1991.Tb07852.X  0.568
1989 Deng XW, Wing RA, Gruissem W. The chloroplast genome exists in multimeric forms. Proceedings of the National Academy of Sciences of the United States of America. 86: 4156-60. PMID 16594051 DOI: 10.1073/Pnas.86.11.4156  0.415
1989 Deng XW, Tonkyn JC, Peter GF, Thornber JP, Gruissem W. Post-transcriptional control of plastid mRNA accumulation during adaptation of chloroplasts to different light quality environments. The Plant Cell. 1: 645-54. PMID 2535516 DOI: 10.1105/Tpc.1.6.645  0.602
1988 Deng XW, Gruissem W. Constitutive transcription and regulation of gene expression in non-photosynthetic plastids of higher plants. The Embo Journal. 7: 3301-8. PMID 16453858 DOI: 10.1002/J.1460-2075.1988.Tb03200.X  0.597
1988 Gruissem W, Barkan A, Deng XW, Stern D. Transcriptional and post-transcriptional control of plastid mRNA levels in higher plants. Trends in Genetics : Tig. 4: 258-63. PMID 3070872 DOI: 10.1016/0168-9525(88)90033-9  0.527
1987 Deng XW, Stern DB, Tonkyn JC, Gruissem W. Plastid run-on transcription. Application to determine the transcriptional regulation of spinach plastid genes. The Journal of Biological Chemistry. 262: 9641-8. PMID 3597430  0.546
1987 Deng XW, Gruissem W. Control of plastid gene expression during development: the limited role of transcriptional regulation. Cell. 49: 379-87. PMID 3568130 DOI: 10.1016/0092-8674(87)90290-X  0.569
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