Xing-Wang Deng - Publications

Affiliations: 
National Institute of Biological Sciences, Beijing, China, Beijing, Beijing Shi, China 

293 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Yang L, Liu P, Wang X, Jia A, Ren D, Tang Y, Tang Y, Deng XW, He G. A central circadian oscillator confers defense heterosis in hybrids without growth vigor costs. Nature Communications. 12: 2317. PMID 33875651 DOI: 10.1038/s41467-021-22268-z  0.8
2021 Liu W, He G, Deng XW. Biological pathway expression complementation contributes to biomass heterosis in . Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33846256 DOI: 10.1073/pnas.2023278118  0.76
2021 Yan W, Deng XW, Yang C, Tang X. The Genome-Wide EMS Mutagenesis Bias Correlates With Sequence Context and Chromatin Structure in Rice. Frontiers in Plant Science. 12: 579675. PMID 33841451 DOI: 10.3389/fpls.2021.579675  0.56
2021 Li G, Wang L, Yang J, He H, Jin H, Li X, Ren T, Ren Z, Li F, Han X, Zhao X, Dong L, Li Y, Song Z, Yan Z, ... ... Deng XW, et al. A high-quality genome assembly highlights rye genomic characteristics and agronomically important genes. Nature Genetics. PMID 33737755 DOI: 10.1038/s41588-021-00808-z  0.84
2021 Zhao P, Zhang X, Gong Y, Wang D, Xu D, Wang N, Sun Y, Gao L, Liu SS, Deng XW, Kliebenstein DJ, Zhou X, Fang RX, Ye J. Red-light is an environmental effector for mutualism between begomovirus and its vector whitefly. Plos Pathogens. 17: e1008770. PMID 33428670 DOI: 10.1371/journal.ppat.1008770  0.84
2020 Han X, Huang X, Deng XW. The Photomorphogenic Central Repressor COP1: Conservation and Functional Diversification during Evolution. Plant Communications. 1: 100044. PMID 33367240 DOI: 10.1016/j.xplc.2020.100044  0.84
2020 Wang J, Sun N, Zhang F, Yu R, Chen H, Deng XW, Wei N. Differential Regulation of Arabidopsis PP2C-D1 by SAUR17 and SAUR50 in Apical Hook Development and Cotyledon Opening. The Plant Cell. PMID 33093148 DOI: 10.1105/tpc.20.00283  0.96
2020 Liu H, Lin R, Deng XW. Photobiology: light signal transduction and photomorphogenesis. Journal of Integrative Plant Biology. PMID 32776700 DOI: 10.1111/jipb.13004  0.52
2020 Zhu W, Zhou H, Lin F, Zhao X, Jiang Y, Xu D, Deng XW. COLD-REGULATED GENE 27 Integrates Signals from Light and the Circadian Clock to Promote Hypocotyl Growth in Arabidopsis. The Plant Cell. PMID 32732313 DOI: 10.1105/tpc.20.00192  0.84
2020 Li J, Wang Z, He G, Ma L, Deng XW. CRISPR/Cas9-mediated disruption of TaNP1 genes results in complete male sterility in bread wheat. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 32694014 DOI: 10.1016/j.jgg.2020.05.004  0.84
2020 Yang P, Wen Q, Yu R, Han X, Deng XW, Chen H. Light modulates the gravitropic responses through organ-specific PIFs and HY5 regulation of expression in . Proceedings of the National Academy of Sciences of the United States of America. PMID 32690706 DOI: 10.1073/pnas.2005871117  0.84
2020 Xu D, Deng XW. CBF-phyB-PIF Module Links Light and Low Temperature Signaling. Trends in Plant Science. PMID 32682648 DOI: 10.1016/j.tplants.2020.06.010  0.84
2020 Song Z, Yan T, Liu J, Bian Y, Heng Y, Lin F, Jiang Y, Deng XW, Xu D. BBX28/BBX29-HY5-BBX30/31 form a feedback loop to fine-tune photomorphogenic development. The Plant Journal : For Cell and Molecular Biology. PMID 32654323 DOI: 10.1111/tpj.14929  0.84
2020 Xu D, Wu D, Li XH, Jiang Y, Tian T, Chen Q, Ma L, Wang H, Deng XW, Li G. Light and Abscisic Acid Coordinately Regulate Greening of Seedlings. Plant Physiology. PMID 32414897 DOI: 10.1104/pp.20.00503  1
2020 Wang X, Yu R, Wang J, Lin Z, Han X, Deng Z, Fan L, He H, Deng XW, Chen H. The Asymmetric Expression of SAUR Genes Mediated by ARF7/19 Promotes the Gravitropism and Phototropism of Plant Hypocotyls. Cell Reports. 31: 107529. PMID 32320660 DOI: 10.1016/j.celrep.2020.107529  0.88
2020 Li J, Terzaghi W, Gong Y, Li C, Ling JJ, Fan Y, Qin N, Gong X, Zhu D, Deng XW. Modulation of BIN2 kinase activity by HY5 controls hypocotyl elongation in the light. Nature Communications. 11: 1592. PMID 32221308 DOI: 10.1038/s41467-020-15394-7  0.84
2020 Lin Z, Qin P, Zhang X, Fu C, Deng H, Fu X, Huang Z, Jiang S, Li C, Tang X, Wang X, He G, Yang Y, He H, Deng XW. Divergent selection and genetic introgression shape the genome landscape of heterosis in hybrid rice. Proceedings of the National Academy of Sciences of the United States of America. PMID 32071222 DOI: 10.1073/pnas.1919086117  0.84
2020 Zhang H, Wang M, Li Y, Yan W, Chang Z, Ni H, Chen Z, Wu J, Xu C, Deng XW, Tang X. GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development. Journal of Integrative Plant Biology. PMID 32068333 DOI: 10.1111/jipb.12919  0.72
2020 Liu P, Deng X, Peng Y, Zhou F, Zuo Z. Effect of Neotype Rectal Mild Hypothermia Therapy on Intestinal Bacterial Translocation in Rats with Hypoxic-Ischemic Brain Damage. Medical Science Monitor : International Medical Journal of Experimental and Clinical Research. 26: e919680. PMID 32017761 DOI: 10.12659/MSM.919680  0.56
2019 Heng Y, Jiang Y, Zhao X, Zhou H, Wang X, Deng XW, Xu D. BBX4, a phyB-interacting and modulated regulator, directly interacts with PIF3 to fine tune red light-mediated photomorphogenesis. Proceedings of the National Academy of Sciences of the United States of America. PMID 31776262 DOI: 10.1073/pnas.1915149116  0.84
2019 Li H, Jiang S, Li C, Liu L, Lin Z, He H, Deng XW, Zhang Z, Wang X. The Hybrid Protein Interactome Contributes to Rice Heterosis as Epistatic Effects. The Plant Journal : For Cell and Molecular Biology. PMID 31736145 DOI: 10.1111/Tpj.14616  0.84
2019 Dong J, Chen H, Deng XW, Irish VF, Wei N. Phytochrome B induces intron retention and translational inhibition of PHYTOCHROME-INTERACTING FACTOR 3. Plant Physiology. PMID 31690709 DOI: 10.1104/pp.19.00835  0.96
2019 Yu X, Dong J, Deng Z, Jiang Y, Wu C, Qin X, Terzaghi W, Chen H, Dai M, Deng XW. PP6 phosphatases dephosphorylate PIF proteins to repress photomorphogenesis. Proceedings of the National Academy of Sciences of the United States of America. PMID 31527236 DOI: 10.1073/pnas.1907540116  0.84
2019 Wang L, Cheng M, Yang Q, Li J, Wang X, Zhou Q, Nagawa S, Xia B, Xu T, Huang R, He J, Li C, Fu Y, Liu Y, Bao J, ... Deng XW, et al. Arabinogalactan protein-rare earth element complexes activate plant endocytosis. Proceedings of the National Academy of Sciences of the United States of America. PMID 31239335 DOI: 10.1073/Pnas.1902532116  0.88
2019 Han X, Chang X, Zhang Z, Chen H, He H, Zhong B, Deng XW. Origin and evolution of core components responsible for monitoring light environment changes during plant terrestrialization. Molecular Plant. PMID 31009752 DOI: 10.1016/j.molp.2019.04.006  0.84
2019 Dong J, Sun N, Yang J, Deng Z, Lan J, Qin G, He H, Deng XW, Irish VF, Chen H, Wei N. TCP4 and PIF3 antagonistically regulate organ-specific light induction of SAUR16/50 to modulate cotyledon opening during de-etiolation in Arabidopsis. The Plant Cell. PMID 30914467 DOI: 10.1105/Tpc.18.00803  0.96
2019 Ren H, Han J, Yang P, Mao W, Liu X, Qiu L, Qian C, Liu Y, Chen Z, Ouyang X, Chen X, Deng XW, Huang X. Two E3 ligases antagonistically regulate the UV-B response in . Proceedings of the National Academy of Sciences of the United States of America. PMID 30787186 DOI: 10.1073/pnas.1816268116  0.76
2019 Heng Y, Lin F, Jiang Y, Ding M, Yan T, Lan H, Zhou H, Zhao X, Xu D, Deng XW. B-box containing proteins BBX30 and BBX31, acting downstream of HY5, negatively regulate photomorphogenesis in Arabidopsis. Plant Physiology. PMID 30765480 DOI: 10.1104/pp.18.01244  0.84
2018 Ren D, Wang X, Yang M, Yang L, He G, Deng XW. A new regulator of seed size control in Arabidopsis identified by a genome-wide association study. The New Phytologist. PMID 30556142 DOI: 10.1111/nph.15642  0.8
2018 Wang H, Deng XW. . Genomics, Proteomics & Bioinformatics. PMID 30553883 DOI: 10.1016/j.gpb.2018.12.001  1
2018 Zhou Y, Yang L, Duan J, Cheng J, Shen Y, Wang X, Han R, Li H, Li Z, Wang L, Terzaghi W, Zhu D, Chen H, Deng XW, Li J. Hinge region of phyA plays an important role in regulating phyA function. Proceedings of the National Academy of Sciences of the United States of America. PMID 30478060 DOI: 10.1073/pnas.1813162115  0.84
2018 Wang X, Yang M, Ren D, Terzaghi W, Deng XW, He G. Cis-regulated alternative splicing divergence and its potential contribution to environmental responses in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. PMID 30375060 DOI: 10.1111/Tpj.14142  0.8
2018 Zhao X, Jiang Y, Li J, Huq E, Chen ZJ, Xu D, Deng XW. COP1 SUPPRESSOR 4 promotes seedling photomorphogenesis by repressing and expression in . Proceedings of the National Academy of Sciences of the United States of America. PMID 30352855 DOI: 10.1073/Pnas.1813171115  0.84
2018 Lin F, Jiang Y, Li J, Yan T, Fan L, Liang JS, Chen ZJ, Xu D, Deng XW. BBX28 negatively regulates photomorphogenesis by repressing HY5 activity and itself undergoes COP1-mediated degradation in Arabidopsis. The Plant Cell. PMID 30099385 DOI: 10.1105/Tpc.18.00226  0.84
2018 Xia M, Han X, He H, Yu R, Zhen G, Jia X, Cheng B, Deng XW. Improved de novo genome assembly and analysis of the Chinese cucurbit Siraitia grosvenorii, also known as monk fruit or luo-han-guo. Gigascience. PMID 29893829 DOI: 10.1093/gigascience/giy067  0.84
2018 Shi H, Lyu M, Luo Y, Liu S, Li Y, He H, Wei N, Deng XW, Zhong S. Genome-wide regulation of light-controlled seedling morphogenesis by three families of transcription factors. Proceedings of the National Academy of Sciences of the United States of America. PMID 29844157 DOI: 10.1073/pnas.1803861115  0.96
2018 Song Q, Ando A, Xu D, Fang L, Zhang T, Huq E, Qiao H, Deng XW, Chen ZJ. Diurnal down-regulation of ethylene biosynthesis mediates biomass heterosis. Proceedings of the National Academy of Sciences of the United States of America. PMID 29735680 DOI: 10.1073/Pnas.1722068115  0.84
2018 Zhang S, Li C, Zhou Y, Wang X, Li H, Feng Z, Chen H, Qin G, Jin D, Terzaghi W, Gu H, Qu LJ, Kang D, Deng XW, Li J. TANDEM ZINC-FINGER/PLUS3 is a key component of phytochrome A signaling. The Plant Cell. PMID 29588390 DOI: 10.1105/Tpc.17.00677  0.84
2018 Jin D, Wu M, Li B, Bücker B, Keil P, Zhang S, Li J, Kang D, Liu J, Dong J, Deng XW, Irish V, Wei N. The COP9 Signalosome regulates seed germination by facilitating protein degradation of RGL2 and ABI5. Plos Genetics. 14: e1007237. PMID 29462139 DOI: 10.1371/journal.pgen.1007237  0.96
2017 Xu D, Jiang Y, Li J, Holm M, Deng XW. The B-box domain protein BBX21 promotes photomorphogenesis. Plant Physiology. PMID 29259103 DOI: 10.1104/pp.17.01305  0.84
2017 Wang Y, Li J, Deng XW, Zhu D. Arabidopsis noncoding RNA modulates seedling greening during deetiolation. Science China. Life Sciences. PMID 29143279 DOI: 10.1007/S11427-017-9187-9  0.84
2017 Wang Z, Li J, Chen S, Heng Y, Chen Z, Yang J, Zhou K, Pei J, He H, Deng XW, Ma L. Poaceae-specific MS1 encodes a phospholipid-binding protein for male fertility in bread wheat. Proceedings of the National Academy of Sciences of the United States of America. PMID 29109252 DOI: 10.1073/pnas.1715570114  0.84
2017 Xu D, Deng XW. Reply to Jin and Zhu: PINOID-mediated COP1 phosphorylation matters in photomorphogenesis in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. PMID 28912351 DOI: 10.1073/pnas.1712385114  0.84
2017 Zhen G, Qin P, Liu KY, Nie DY, Yang YZ, Deng XW, He H. Genome-wide dissection of heterosis for yield traits in two-line hybrid rice populations. Scientific Reports. 7: 7635. PMID 28794433 DOI: 10.1038/s41598-017-06742-7  0.84
2017 Dong J, Ni W, Yu R, Deng XW, Chen H, Wei N. Light-Dependent Degradation of PIF3 by SCF(EBF1/2) Promotes a Photomorphogenic Response in Arabidopsis. Current Biology : Cb. PMID 28736168 DOI: 10.1016/j.cub.2017.06.062  0.96
2017 Yang M, Wang X, Ren D, Huang H, Xu M, He G, Deng XW. Genomic architecture of biomass heterosis in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. PMID 28696287 DOI: 10.1073/pnas.1705423114  0.8
2017 Lin F, Xu D, Jiang Y, Chen H, Fan L, Holm M, Deng XW. Phosphorylation and negative regulation of CONSTITUTIVELY PHOTOMORPHOGENIC 1 by PINOID in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. PMID 28584104 DOI: 10.1073/pnas.1702984114  0.84
2017 Ling JJ, Li J, Zhu D, Deng XW. Noncanonical role of Arabidopsis COP1/SPA complex in repressing BIN2-mediated PIF3 phosphorylation and degradation in darkness. Proceedings of the National Academy of Sciences of the United States of America. PMID 28292892 DOI: 10.1073/pnas.1700850114  0.84
2016 Yan W, Chen Z, Lu J, Xu C, Xie G, Li Y, Deng XW, He H, Tang X. Simultaneous Identification of Multiple Causal Mutations in Rice. Frontiers in Plant Science. 7: 2055. PMID 28144247 DOI: 10.3389/fpls.2016.02055  0.84
2016 Shi H, Shen X, Liu R, Xue C, Wei N, Deng XW, Zhong S. The Red Light Receptor Phytochrome B Directly Enhances Substrate-E3 Ligase Interactions to Attenuate Ethylene Responses. Developmental Cell. PMID 27889482 DOI: 10.1016/j.devcel.2016.10.020  0.96
2016 Chang Z, Chen Z, Wang N, Xie G, Lu J, Yan W, Zhou J, Tang X, Deng XW. Construction of a male sterility system for hybrid rice breeding and seed production using a nuclear male sterility gene. Proceedings of the National Academy of Sciences of the United States of America. PMID 27864513 DOI: 10.1073/pnas.1613792113  0.72
2016 Zhu P, Wang Y, Qin N, Wang F, Wang J, Deng XW, Zhu D. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proceedings of the National Academy of Sciences of the United States of America. PMID 27708161 DOI: 10.1073/pnas.1614852113  0.56
2016 Xu D, Jiang Y, Li J, Lin F, Holm M, Deng XW. BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation. Proceedings of the National Academy of Sciences of the United States of America. PMID 27325768 DOI: 10.1073/pnas.1607687113  0.84
2016 Yu R, Yan W, Liang M, Dai X, Chen H, Sun Y, Deng XW, Chen X, He H, Chen L. Exploring the genetic characteristics of 93-11 and Nipponbare recombination inbred lines based on the GoldenGate SNP assay. Science China. Life Sciences. PMID 27311455 DOI: 10.1007/s11427-016-5082-x  0.84
2016 Li K, Yu R, Fan LM, Wei N, Chen H, Deng XW. DELLA-mediated PIF degradation contributes to coordination of light and gibberellin signalling in Arabidopsis. Nature Communications. 7: 11868. PMID 27282989 DOI: 10.1038/ncomms11868  0.96
2016 Sun N, Wang J, Gao Z, Dong J, He H, Terzaghi W, Wei N, Deng XW, Chen H. Arabidopsis SAURs are critical for differential light regulation of the development of various organs. Proceedings of the National Academy of Sciences of the United States of America. PMID 27118848 DOI: 10.1073/pnas.1604782113  0.56
2016 Yan J, Lv S, Hu M, Gao Z, He H, Ma Q, Deng XW, Zhu Z, Wang X. Single-Molecule Sequencing Assists Genome Assembly Improvement and Structural Variation Inference. Molecular Plant. PMID 27109603 DOI: 10.1016/j.molp.2016.04.002  0.84
2016 Yang M, Huang H, Zhang C, Wang Z, Su Y, Zhu P, Guo Y, Deng XW. Arabidopsis atypical kinase ABC1K1 is involved in red light-mediated development. Plant Cell Reports. PMID 27038938 DOI: 10.1007/s00299-016-1953-7  1
2016 Xu D, Zhu D, Deng XW. The role of COP1 in repression of photoperiodic flowering. F1000research. 5. PMID 26949521 DOI: 10.12688/f1000research.7346.1  0.84
2016 Yu Y, Wang J, Shi H, Gu J, Dong J, Deng XW, Huang R. Salt stress and ethylene antagonistically regulate nucleocytoplasmic partitioning of COP1 to control seed germination. Plant Physiology. PMID 26850275 DOI: 10.1104/pp.15.01724  1
2016 Dutilleul C, Ribeiro I, Blanc N, Nezames CD, Deng XW, Zglobicki P, Palacio Barrera AM, Atehortùa L, Courtois M, Labas V, Giglioli-Guivarc'h N, Ducos E. ASG2 is a farnesylated DWD protein that acts as ABA negative regulator in Arabidopsis. Plant, Cell & Environment. 39: 185-98. PMID 26147561 DOI: 10.1111/Pce.12605  0.64
2015 Shi H, Liu R, Xue C, Shen X, Wei N, Deng XW, Zhong S. Seedlings Transduce the Depth and Mechanical Pressure of Covering Soil Using COP1 and Ethylene to Regulate EBF1/EBF2 for Soil Emergence. Current Biology : Cb. PMID 26748855 DOI: 10.1016/j.cub.2015.11.053  1
2015 Xu D, Lin F, Jiang Y, Ling J, Hettiarachchi C, Tellgren-Roth C, Holm M, Wei N, Deng XW. Arabidopsis COP1 SUPPRESSOR 2 Represses COP1 E3 Ubiquitin Ligase Activity through Their Coiled-Coil Domains Association. Plos Genetics. 11: e1005747. PMID 26714275 DOI: 10.1371/journal.pgen.1005747  1
2015 Ma L, Tian T, Lin R, Deng XW, Wang H, Li G. Arabidopsis FHY3 and FAR1 Mediate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Molecular Plant. PMID 26714049 DOI: 10.1016/j.molp.2015.12.013  0.44
2015 Zhen G, Zhang L, Du Y, Yu R, Liu X, Cao F, Chang Q, Deng X, Xia M, He H. De novo assembly and comparative analysis of root transcriptomes from different varieties of Panax ginseng C. A. Meyer grown in different environments. Science China. Life Sciences. 58: 1099-110. PMID 26563176 DOI: 10.1007/S11427-015-4961-X  1
2015 Yang M, Wang X, Huang H, Ren D, Su Y, Zhu P, Zhu D, Fan L, Chen L, He G, Deng XW. Natural variation of H3K27me3 modification in two Arabidopsis accessions and their hybrid. Journal of Integrative Plant Biology. PMID 26497803 DOI: 10.1111/jipb.12443  1
2015 Yang L, Li B, Zheng XY, Li J, Yang M, Dong X, He G, An C, Deng XW. Corrigendum: Salicylic acid biosynthesis is enhanced and contributes to increased biotrophic pathogen resistance in Arabidopsis hybrids. Nature Communications. 6: 8145. PMID 26265083 DOI: 10.1038/Ncomms9145  0.84
2015 Huang L, Zhang H, Zhang H, Deng XW, Wei N. HY5 regulates nitrite reductase 1 (NIR1) and ammonium transporter1;2 (AMT1;2) in Arabidopsis seedlings. Plant Science : An International Journal of Experimental Plant Biology. 238: 330-339. PMID 26259199 DOI: 10.1016/j.plantsci.2015.05.004  0.96
2015 Zhou D, Chen W, Lin Z, Chen H, Wang C, Li H, Yu R, Zhang F, Zhen G, Yi J, Li K, Liu Y, Terzaghi W, Tang X, He H, ... Deng XW, et al. Pedigree-based analysis of derivation of genome segments of an elite rice reveals key regions during its breeding. Plant Biotechnology Journal. PMID 26096084 DOI: 10.1111/pbi.12409  0.84
2015 Yang L, Li B, Zheng XY, Li J, Yang M, Dong X, He G, An C, Deng XW. Salicylic acid biosynthesis is enhanced and contributes to increased biotrophic pathogen resistance in Arabidopsis hybrids. Nature Communications. 6: 7309. PMID 26065719 DOI: 10.1038/Ncomms8309  0.84
2015 Zhu L, Bu Q, Xu X, Paik I, Huang X, Hoecker U, Deng XW, Huq E. CUL4 forms an E3 ligase with COP1 and SPA to promote light-induced degradation of PIF1. Nature Communications. 6: 7245. PMID 26037329 DOI: 10.1038/Ncomms8245  0.84
2015 Huang H, Yang M, Su Y, Qu L, Deng XW. Arabidopsis Atypical Kinases ABC1K1 and ABC1K3 Act Oppositely to Cope with Photodamage Under Red Light. Molecular Plant. 8: 1122-4. PMID 25882344 DOI: 10.1016/J.Molp.2015.04.003  0.8
2015 Dong J, Terzaghi W, Deng XW, Chen H. Multiple photomorphogenic repressors work in concert to regulate Arabidopsis seedling development. Plant Signaling & Behavior. 10: e1011934. PMID 25853593 DOI: 10.1080/15592324.2015.1011934  0.84
2015 Shi H, Wang X, Mo X, Tang C, Zhong S, Deng XW. Arabidopsis DET1 degrades HFR1 but stabilizes PIF1 to precisely regulate seed germination. Proceedings of the National Academy of Sciences of the United States of America. 112: 3817-22. PMID 25775589 DOI: 10.1073/Pnas.1502405112  0.8
2015 Li K, Gao Z, He H, Terzaghi W, Fan LM, Deng XW, Chen H. Arabidopsis DET1 represses photomorphogenesis in part by negatively regulating DELLA protein abundance in darkness. Molecular Plant. 8: 622-30. PMID 25704163 DOI: 10.1016/j.molp.2014.12.017  0.84
2014 Zhang H, Zhao X, Li J, Cai H, Deng XW, Li L. MicroRNA408 is critical for the HY5-SPL7 gene network that mediates the coordinated response to light and copper. The Plant Cell. 26: 4933-53. PMID 25516599 DOI: 10.1105/Tpc.114.127340  0.84
2014 Kim SH, Lee JH, Seo KI, Ryu B, Sung Y, Chung T, Deng XW, Lee JH. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Molecules and Cells. 37: 833-40. PMID 25358503 DOI: 10.14348/Molcells.2014.0224  0.56
2014 Dong J, Tang D, Gao Z, Yu R, Li K, He H, Terzaghi W, Deng XW, Chen H. Arabidopsis DE-ETIOLATED1 represses photomorphogenesis by positively regulating phytochrome-interacting factors in the dark. The Plant Cell. 26: 3630-45. PMID 25248553 DOI: 10.1105/tpc.114.130666  0.84
2014 Kim SH, Kim H, Seo KI, Kim SH, Chung S, Huang X, Yang P, Deng XW, Lee JH. DWD HYPERSENSITIVE TO UV-B 1 is negatively involved in UV-B mediated cellular responses in Arabidopsis. Plant Molecular Biology. 86: 571-83. PMID 25193399 DOI: 10.1007/s11103-014-0247-0  0.76
2014 Wang L, Li J, Zhou Q, Yang G, Ding XL, Li X, Cai CX, Zhang Z, Wei HY, Lu TH, Deng XW, Huang XH. Rare earth elements activate endocytosis in plant cells. Proceedings of the National Academy of Sciences of the United States of America. 111: 12936-41. PMID 25114214 DOI: 10.1073/pnas.1413376111  0.84
2014 Chen F, Li B, Demone J, Charron JB, Shi X, Deng XW. Photoreceptor partner FHY1 has an independent role in gene modulation and plant development under far-red light Proceedings of the National Academy of Sciences of the United States of America. 111: 11888-11893. PMID 25071219 DOI: 10.1073/pnas.1412528111  1
2014 Huang X, Ouyang X, Deng XW. Beyond repression of photomorphogenesis: role switching of COP/DET/FUS in light signaling. Current Opinion in Plant Biology. 21: 96-103. PMID 25061897 DOI: 10.1016/j.pbi.2014.07.003  1
2014 Ouyang X, Huang X, Jin X, Chen Z, Yang P, Ge H, Li S, Deng XW. Coordinated photomorphogenic UV-B signaling network captured by mathematical modeling. Proceedings of the National Academy of Sciences of the United States of America. 111: 11539-44. PMID 25049395 DOI: 10.1073/pnas.1412050111  0.76
2014 Wang Y, Fan X, Lin F, He G, Terzaghi W, Zhu D, Deng XW. Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light. Proceedings of the National Academy of Sciences of the United States of America. 111: 10359-64. PMID 24982146 DOI: 10.1073/pnas.1409457111  0.76
2014 Jin D, Li B, Deng XW, Wei N. Plant COP9 signalosome subunit 5, CSN5. Plant Science : An International Journal of Experimental Plant Biology. 224: 54-61. PMID 24908506 DOI: 10.1016/J.Plantsci.2014.04.001  0.96
2014 Xu X, Paik I, Zhu L, Bu Q, Huang X, Deng XW, Huq E. PHYTOCHROME INTERACTING FACTOR1 Enhances the E3 Ligase Activity of CONSTITUTIVE PHOTOMORPHOGENIC1 to Synergistically Repress Photomorphogenesis in Arabidopsis. The Plant Cell. 26: 1992-2006. PMID 24858936 DOI: 10.1105/Tpc.114.125591  0.84
2014 Xu D, Lin F, Jiang Y, Huang X, Li J, Ling J, Hettiarachchi C, Tellgren-Roth C, Holm M, Deng XW. The RING-Finger E3 Ubiquitin Ligase COP1 SUPPRESSOR1 Negatively Regulates COP1 Abundance in Maintaining COP1 Homeostasis in Dark-Grown Arabidopsis Seedlings. The Plant Cell. 26: 1981-1991. PMID 24838976 DOI: 10.1105/tpc.114.124024  1
2014 Chen F, Li B, Li G, Charron JB, Dai M, Shi X, Deng XW. Arabidopsis Phytochrome A Directly Targets Numerous Promoters for Individualized Modulation of Genes in a Wide Range of Pathways. The Plant Cell. 26: 1949-1966. PMID 24794133 DOI: 10.1105/tpc.114.123950  0.84
2014 Xu WH, Hu HG, Tian Y, Wang SZ, Li J, Li JZ, Deng X, Qian H, Qiu L, Hu ZL, Wu QY, Chai YF, Guo C, Xie WF, Zhang JP. Bioactive compound reveals a novel function for ribosomal protein S5 in hepatic stellate cell activation and hepatic fibrosis. Hepatology (Baltimore, Md.). 60: 648-60. PMID 24668691 DOI: 10.1002/hep.27138  0.84
2014 Huang X, Yang P, Ouyang X, Chen L, Deng XW. Photoactivated UVR8-COP1 module determines photomorphogenic UV-B signaling output in Arabidopsis. Plos Genetics. 10: e1004218. PMID 24651064 DOI: 10.1371/journal.pgen.1004218  0.76
2014 Zhong S, Shi H, Xue C, Wei N, Guo H, Deng XW. Ethylene-orchestrated circuitry coordinates a seedling's response to soil cover and etiolated growth. Proceedings of the National Academy of Sciences of the United States of America. 111: 3913-20. PMID 24599595 DOI: 10.1073/Pnas.1402491111  0.96
2014 Xu D, Li J, Gangappa SN, Hettiarachchi C, Lin F, Andersson MX, Jiang Y, Deng XW, Holm M. Convergence of Light and ABA signaling on the ABI5 promoter. Plos Genetics. 10: e1004197. PMID 24586210 DOI: 10.1371/journal.pgen.1004197  1
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2012 Chen F, Shi X, Chen L, Dai M, Zhou Z, Shen Y, Li J, Li G, Wei N, Deng XW. Phosphorylation of FAR-RED ELONGATED HYPOCOTYL1 is a key mechanism defining signaling dynamics of phytochrome A under red and far-red light in Arabidopsis. The Plant Cell. 24: 1907-20. PMID 22582101 DOI: 10.1105/tpc.112.097733  0.96
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2007 Menon S, Chi H, Zhang H, Deng XW, Flavell RA, Wei N. COP9 signalosome subunit 8 is essential for peripheral T cell homeostasis and antigen receptor-induced entry into the cell cycle from quiescence. Nature Immunology. 8: 1236-45. PMID 17906629 DOI: 10.1038/Ni1514  0.96
2007 Liu B, Chen Z, Song X, Liu C, Cui X, Zhao X, Fang J, Xu W, Zhang H, Wang X, Chu C, Deng X, Xue Y, Cao X. Oryza sativa dicer-like4 reveals a key role for small interfering RNA silencing in plant development. The Plant Cell. 19: 2705-18. PMID 17905898 DOI: 10.1105/Tpc.107.052209  0.84
2007 Qin G, Gu H, Ma L, Peng Y, Deng XW, Chen Z, Qu LJ. Disruption of phytoene desaturase gene results in albino and dwarf phenotypes in Arabidopsis by impairing chlorophyll, carotenoid, and gibberellin biosynthesis. Cell Research. 17: 471-82. PMID 17486124 DOI: 10.1038/Cr.2007.40  0.84
2007 Pick E, Lau OS, Tsuge T, Menon S, Tong Y, Dohmae N, Plafker SM, Xing WD, Wei N. Mammalian DET1 regulates Cul4A activity and forms stable complexes with E2 ubiquitin-conjugating enzymes Molecular and Cellular Biology. 27: 4708-4719. PMID 17452440 DOI: 10.1128/Mcb.02432-06  0.48
2007 Han B, Xue Y, Li J, Deng XW, Zhang Q. Rice functional genomics research in China. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 362: 1009-21. PMID 17347106 DOI: 10.1098/Rstb.2007.2030  0.84
2007 Lee J, He K, Stolc V, Lee H, Figueroa P, Gao Y, Tongprasit W, Zhao H, Lee I, Deng XW. Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development. The Plant Cell. 19: 731-49. PMID 17337630 DOI: 10.1105/Tpc.106.047688  0.76
2007 Jiao Y, Deng XW. A genome-wide transcriptional activity survey of rice transposable element-related genes. Genome Biology. 8: R28. PMID 17326825 DOI: 10.1186/Gb-2007-8-2-R28  1
2007 Gusmaroli G, Figueroa P, Serino G, Deng XW. Role of the MPN subunits in COP9 signalosome assembly and activity, and their regulatory interaction with Arabidopsis Cullin3-based E3 ligases. The Plant Cell. 19: 564-81. PMID 17307927 DOI: 10.1105/Tpc.106.047571  1
2007 Jiao Y, Lau OS, Deng XW. Light-regulated transcriptional networks in higher plants Nature Reviews Genetics. 8: 217-230. PMID 17304247 DOI: 10.1038/Nrg2049  1
2007 Zhou J, Wang X, Jiao Y, Qin Y, Liu X, He K, Chen C, Ma L, Wang J, Xiong L, Zhang Q, Fan L, Deng XW. Global genome expression analysis of rice in response to drought and high-salinity stresses in shoot, flag leaf, and panicle. Plant Molecular Biology. 63: 591-608. PMID 17225073 DOI: 10.1007/S11103-006-9111-1  1
2007 Su N, He K, Jiao Y, Chen C, Zhou J, Li L, Bai S, Li X, Deng XW. Distinct reorganization of the genome transcription associates with organogenesis of somatic embryo, shoots, and roots in rice. Plant Molecular Biology. 63: 337-49. PMID 17072560 DOI: 10.1007/S11103-006-9092-0  1
2007 Zhang Y, Wen P, Lau OS, Deng XW. Characterization of the ubiquitin E2 enzyme variant gene family in Arabidopsis Journal of Integrative Plant Biology. 49: 120-126. DOI: 10.1111/J.1744-7909.2006.00419.X  1
2006 Chen H, Shen Y, Tang X, Yu L, Wang J, Guo L, Zhang Y, Zhang H, Feng S, Strickland E, Zheng N, Deng XW. Arabidopsis CULLIN4 Forms an E3 Ubiquitin Ligase with RBX1 and the CDD Complex in Mediating Light Control of Development. The Plant Cell. 18: 1991-2004. PMID 16844902 DOI: 10.1105/Tpc.106.043224  1
2006 Guo L, Yin B, Zhou J, Li X, Deng XW. Development of rabbit monoclonal and polyclonal antibodies for detection of site-specific histone modifications and their application in analyzing overall modification levels. Cell Research. 16: 519-27. PMID 16699547 DOI: 10.1038/sj.cr.7310063  0.72
2006 Han Z, Guo L, Wang H, Shen Y, Deng XW, Chai J. Structural basis for the specific recognition of methylated histone H3 lysine 4 by the WD-40 protein WDR5. Molecular Cell. 22: 137-44. PMID 16600877 DOI: 10.1016/J.Molcel.2006.03.018  1
2006 Dong L, Wang L, Zhang Y, Zhang Y, Deng X, Xue Y. An auxin-inducible F-box protein CEGENDUO negatively regulates auxin-mediated lateral root formation in Arabidopsis. Plant Molecular Biology. 60: 599-615. PMID 16525894 DOI: 10.1007/S11103-005-5257-5  0.76
2006 Yi C, Li S, Wang J, Wei N, Deng XW. Affinity purification reveals the association of WD40 protein constitutive photomorphogenic 1 with the hetero-oligomeric TCP-1 chaperonin complex in mammalian cells. The International Journal of Biochemistry & Cell Biology. 38: 1076-83. PMID 16497536 DOI: 10.1016/J.Biocel.2005.12.019  1
2006 Datta S, Hettiarachchi GHCM, Deng X, Holm M. Arabidopsis CONSTANS-LIKE3 is a positive regulator of red light signaling and root growth. The Plant Cell. 18: 70-84. PMID 16339850 DOI: 10.1105/Tpc.105.038182  0.56
2006 Feng JX, Liu D, Pan Y, Gong W, Ma LG, Luo JC, Deng XW, Zhu YX. An annotation update via cDNA sequence analysis and comprehensive profiling of developmental, hormonal or environmental responsiveness of the Arabidopsis AP2/EREBP transcription factor gene family. Plant Molecular Biology. 59: 853-68. PMID 16307362 DOI: 10.1007/s11103-005-1511-0  0.32
2005 Su N, Sullivan JA, Deng XW. Modulation of F1 hybrid stature without altering parent plants through trans-activated expression of a mutated rice GAI homologue. Plant Biotechnology Journal. 3: 157-64. PMID 17173616 DOI: 10.1111/j.1467-7652.2004.00107.x  0.56
2005 Li J, Zhu S, Song X, Shen Y, Chen H, Yu J, Yi K, Liu Y, Karplus VJ, Wu P, Deng XW. A rice glutamate receptor-like gene is critical for the division and survival of individual cells in the root apical meristem. The Plant Cell. 18: 340-9. PMID 16377757 DOI: 10.1105/tpc.105.037713  0.32
2005 Kraft E, Stone SL, Ma L, Su N, Gao Y, Lau OS, Deng XW, Callis J. Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis. Plant Physiology. 139: 1597-611. PMID 16339806 DOI: 10.1104/Pp.105.067983  1
2005 Jiao Y, Ma L, Strickland E, Deng XW. Conservation and divergence of light-regulated genome expression patterns during seedling development in rice and Arabidopsis. The Plant Cell. 17: 3239-56. PMID 16284311 DOI: 10.1105/Tpc.105.035840  1
2005 Menon S, Rubio V, Wang X, Deng X, Wei N. Purification of the COP9 signalosome from porcine spleen, human cell lines, and Arabidopsis thaliana plants. Methods in Enzymology. 398: 468-481. PMID 16275351 DOI: 10.1016/S0076-6879(05)98038-5  0.96
2005 Shen Y, Feng S, Ma L, Lin R, Qu LJ, Chen Z, Wang H, Deng XW. Arabidopsis FHY1 protein stability is regulated by light via phytochrome A and 26S proteasome. Plant Physiology. 139: 1234-43. PMID 16244150 DOI: 10.1104/Pp.105.067645  1
2005 Yi C, Deng XW. COP1 - from plant photomorphogenesis to mammalian tumorigenesis. Trends in Cell Biology. 15: 618-25. PMID 16198569 DOI: 10.1016/j.tcb.2005.09.007  1
2005 Ma L, Chen C, Liu X, Jiao Y, Su N, Li L, Wang X, Cao M, Sun N, Zhang X, Bao J, Li J, Pedersen S, Bolund L, Zhao H, ... ... Deng XW, et al. A microarray analysis of the rice transcriptome and its comparison to Arabidopsis. Genome Research. 15: 1274-83. PMID 16140994 DOI: 10.1101/Gr.3657405  1
2005 Yi C, Li S, Chen X, Wiemer EA, Wang J, Wei N, Deng XW. Major vault protein, in concert with constitutively photomorphogenic 1, negatively regulates c-Jun-mediated activator protein 1 transcription in mammalian cells. Cancer Research. 65: 5835-40. PMID 15994960 DOI: 10.1158/0008-5472.Can-05-0423  1
2005 Li L, Wang X, Xia M, Stolc V, Su N, Peng Z, Li S, Wang J, Wang X, Deng XW. Tiling microarray analysis of rice chromosome 10 to identify the transcriptome and relate its expression to chromosomal architecture. Genome Biology. 6: R52. PMID 15960804 DOI: 10.1186/Gb-2005-6-6-R52  0.88
2005 Ma L, Sun N, Liu X, Jiao Y, Zhao H, Deng XW. Organ-specific expression of Arabidopsis genome during development. Plant Physiology. 138: 80-91. PMID 15888681 DOI: 10.1104/Pp.104.054783  1
2005 Jiao Y, Jia P, Wang X, Su N, Yu S, Zhang D, Ma L, Feng Q, Jin Z, Li L, Xue Y, Cheng Z, Zhao H, Han B, Deng XW. A tiling microarray expression analysis of rice chromosome 4 suggests a chromosome-level regulation of transcription. The Plant Cell. 17: 1641-57. PMID 15863518 DOI: 10.1105/Tpc.105.031575  1
2005 Sang Y, Li QH, Rubio V, Zhang YC, Mao J, Deng XW, Yang HQ. N-terminal domain-mediated homodimerization is required for photoreceptor activity of Arabidopsis CRYPTOCHROME 1. The Plant Cell. 17: 1569-84. PMID 15805487 DOI: 10.1105/Tpc.104.029645  0.56
2005 Figueroa P, Gusmaroli G, Serino G, Habashi J, Ma L, Shen Y, Feng S, Bostick M, Callis J, Hellmann H, Deng XW. Arabidopsis has two redundant Cullin3 proteins that are essential for embryo development and that interact with RBX1 and BTB proteins to form multisubunit E3 ubiquitin ligase complexes in vivo. The Plant Cell. 17: 1180-95. PMID 15772280 DOI: 10.1105/Tpc.105.031989  1
2005 Yang J, Lin R, Sullivan J, Hoecker U, Liu B, Xu L, Deng XW, Wang H. Light regulates COP1-mediated degradation of HFR1, a transcription factor essential for light signaling in Arabidopsis. The Plant Cell. 17: 804-21. PMID 15705947 DOI: 10.1105/Tpc.104.030205  1
2005 Rubio V, Shen Y, Saijo Y, Liu Y, Gusmaroli G, Dinesh-Kumar SP, Deng XW. An alternative tandem affinity purification strategy applied to Arabidopsis protein complex isolation. The Plant Journal : For Cell and Molecular Biology. 41: 767-78. PMID 15703063 DOI: 10.1111/J.1365-313X.2004.02328.X  0.8
2004 Wang L, Dong L, Zhang Y, Zhang Y, Wu W, Deng X, Xue Y. Genome-wide analysis of S-Locus F-box-like genes in Arabidopsis thaliana. Plant Molecular Biology. 56: 929-45. PMID 15821991 DOI: 10.1007/S11103-004-6236-Y  0.76
2004 Boccalandro HE, Rossi MC, Saijo Y, Deng X, Casal JJ. Promotion of photomorphogenesis by COP1 Plant Molecular Biology. 56: 905-915. PMID 15821989 DOI: 10.1007/S11103-004-5919-8  0.56
2004 Gao Y, Li J, Strickland E, Hua S, Zhao H, Chen Z, Qu L, Deng XW. An arabidopsis promoter microarray and its initial usage in the identification of HY5 binding targets in vitro. Plant Molecular Biology. 54: 683-99. PMID 15356388 DOI: 10.1023/B:Plan.0000040898.86788.59  1
2004 Yanagawa Y, Sullivan JA, Komatsu S, Gusmaroli G, Suzuki G, Yin J, Ishibashi T, Saijo Y, Rubio V, Kimura S, Wang J, Deng XW. Arabidopsis COP10 forms a complex with DDB1 and DET1 in vivo and enhances the activity of ubiquitin conjugating enzymes. Genes & Development. 18: 2172-81. PMID 15342494 DOI: 10.1101/Gad.1229504  0.88
2004 Gong W, Shen YP, Ma LG, Pan Y, Du YL, Wang DH, Yang JY, Hu LD, Liu XF, Dong CX, Ma L, Chen YH, Yang XY, Gao Y, Zhu D, ... ... Deng XW, et al. Genome-wide ORFeome cloning and analysis of Arabidopsis transcription factor genes. Plant Physiology. 135: 773-82. PMID 15208423 DOI: 10.1104/Pp.104.042176  0.84
2004 Feng S, Shen Y, Sullivan JA, Rubio V, Xiong Y, Sun TP, Deng XW. Arabidopsis CAND1, an unmodified CUL1-interacting protein, is involved in multiple developmental pathways controlled by ubiquitin/proteasome-mediated protein Degradation. The Plant Cell. 16: 1870-82. PMID 15208391 DOI: 10.1105/tpc.021949  0.8
2003 Sun N, Ma L, Pan D, Zhao H, Deng XW. Evaluation of light regulatory potential of Calvin cycle steps based on large-scale gene expression profiling data. Plant Molecular Biology. 53: 467-78. PMID 15010613 DOI: 10.1023/B:PLAN.0000019071.12878.9e  0.84
2003 Sullivan JA, Shirasu K, Deng XW. The diverse roles of ubiquitin and the 26S proteasome in the life of plants. Nature Reviews. Genetics. 4: 948-58. PMID 14631355 DOI: 10.1038/Nrg1228  0.4
2003 Jiao Y, Yang H, Ma L, Sun N, Yu H, Liu T, Gao Y, Gu H, Chen Z, Wada M, Gerstein M, Zhao H, Qu LJ, Deng XW. A genome-wide analysis of blue-light regulation of Arabidopsis transcription factor gene expression during seedling development. Plant Physiology. 133: 1480-93. PMID 14605227 DOI: 10.1104/Pp.103.029439  1
2003 Pan D, Sun N, Cheung KH, Guan Z, Ma L, Holford M, Deng X, Zhao H. PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis. Bmc Bioinformatics. 4: 56. PMID 14604444 DOI: 10.1186/1471-2105-4-56  1
2003 Saijo Y, Sullivan JA, Wang H, Yang J, Shen Y, Rubio V, Ma L, Hoecker U, Deng XW. The COP1-SPA1 interaction defines a critical step in phytochrome A-mediated regulation of HY5 activity. Genes & Development. 17: 2642-7. PMID 14597662 DOI: 10.1101/Gad.1122903  1
2003 Serino G, Deng XW. The COP9 signalosome: regulating plant development through the control of proteolysis. Annual Review of Plant Biology. 54: 165-82. PMID 14502989 DOI: 10.1146/Annurev.Arplant.54.031902.134847  1
2003 Sullivan JA, Deng XW. From seed to seed: the role of photoreceptors in Arabidopsis development. Developmental Biology. 260: 289-97. PMID 12921732 DOI: 10.1016/S0012-1606(03)00212-4  1
2003 Wu P, Ma L, Hou X, Wang M, Wu Y, Liu F, Deng XW. Phosphate starvation triggers distinct alterations of genome expression in Arabidopsis roots and leaves. Plant Physiology. 132: 1260-71. PMID 12857808 DOI: 10.1104/pp.103.021022  0.84
2003 Peng Z, Shen Y, Feng S, Wang X, Chitteti BN, Vierstra RD, Deng XW. Evidence for a physical association of the COP9 signalosome, the proteasome, and specific SCF E3 ligases in vivo. Current Biology : Cb. 13: R504-5. PMID 12842023 DOI: 10.1016/S0960-9822(03)00439-1  1
2003 Feng S, Ma L, Wang X, Xie D, Dinesh-Kumar SP, Wei N, Deng XW. The COP9 signalosome interacts physically with SCF COI1 and modulates jasmonate responses. The Plant Cell. 15: 1083-94. PMID 12724535 DOI: 10.1105/Tpc.010207  0.32
2003 Wang X, Feng S, Nakayama N, Crosby WL, Irish V, Deng XW, Wei N. The COP9 signalosome interacts with SCF UFO and participates in Arabidopsis flower development. The Plant Cell. 15: 1071-82. PMID 12724534 DOI: 10.1105/Tpc.009936  1
2003 Serino G, Su H, Peng Z, Tsuge T, Wei N, Gu H, Deng XW. Characterization of the last subunit of the Arabidopsis COP9 signalosome: implications for the overall structure and origin of the complex. The Plant Cell. 15: 719-31. PMID 12615944 DOI: 10.1105/Tpc.009092  1
2003 Ma L, Zhao H, Deng XW. Analysis of the mutational effects of the COP/DET/FUS loci on genome expression profiles reveals their overlapping yet not identical roles in regulating Arabidopsis seedling development. Development (Cambridge, England). 130: 969-81. PMID 12538522 DOI: 10.1242/DEV.00281  0.4
2003 Ma L, Gao Y, Qu L, Chen Z, Li J, Zhao H, Deng XW. Genomic evidence for COP1 as a repressor of light-regulated gene expression and development in Arabidopsis. The Plant Cell. 14: 2383-98. PMID 12368493 DOI: 10.1105/Tpc.004416  0.36
2002 Yi C, Wang H, Wei N, Deng XW. An initial biochemical and cell biological characterization of the mammalian homologue of a central plant developmental switch, COP1. Bmc Cell Biology. 3: 30. PMID 12466024 DOI: 10.1186/1471-2121-3-30  1
2002 Schwechheimer C, Serino G, Deng XW. Multiple ubiquitin ligase-mediated processes require COP9 signalosome and AXR1 function. The Plant Cell. 14: 2553-63. PMID 12368504 DOI: 10.1105/Tpc.003434  1
2002 Yadav V, Kundu S, Chattopadhyay D, Negi P, Wei N, Deng X, Chattopadhyay S. Light regulated modulation of Z‐box containing promoters by photoreceptors and downstream regulatory components, COP1 and HY5, in Arabidopsis Plant Journal. 31: 741-753. PMID 12220265 DOI: 10.1046/J.1365-313X.2002.01395.X  0.96
2002 Liu Y, Schiff M, Serino G, Deng XW, Dinesh-Kumar SP. Role of SCF ubiquitin-ligase and the COP9 signalosome in the N gene-mediated resistance response to Tobacco mosaic virus. The Plant Cell. 14: 1483-96. PMID 12119369 DOI: 10.1105/Tpc.002493  1
2002 Hardtke CS, Okamoto H, Stoop-Myer C, Deng XW. Biochemical evidence for ubiquitin ligase activity of the Arabidopsis COP1 interacting protein 8 (CIP8). The Plant Journal : For Cell and Molecular Biology. 30: 385-94. PMID 12028569  0.88
2002 Holm M, Ma LG, Qu LJ, Deng XW. Two interacting bZIP proteins are direct targets of COP1-mediated control of light-dependent gene expression in Arabidopsis. Genes & Development. 16: 1247-59. PMID 12023303 DOI: 10.1101/Gad.969702  0.68
2002 Suzuki G, Yanagawa Y, Kwok SF, Matsui M, Deng XW. Arabidopsis COP10 is a ubiquitin-conjugating enzyme variant that acts together with COP1 and the COP9 signalosome in repressing photomorphogenesis. Genes & Development. 16: 554-9. PMID 11877375 DOI: 10.1101/Gad.964602  0.76
2002 Ma L, Li J, Qu L, Hager J, Chen Z, Zhao H, Deng XW. Light control of Arabidopsis development entails coordinated regulation of genome expression and cellular pathways. The Plant Cell. 13: 2589-607. PMID 11752374 DOI: 10.1105/Tpc.010229  0.32
2001 Peng Z, Serino G, Deng XW. Molecular characterization of subunit 6 of the COP9 signalosome and its role in multifaceted developmental processes in Arabidopsis. The Plant Cell. 13: 2393-407. PMID 11701877 DOI: 10.1105/Tpc.010248  1
2001 Peng Z, Serino G, Deng XW. A role of Arabidopsis COP9 signalosome in multifaceted developmental processes revealed by the characterization of its subunit 3. Development (Cambridge, England). 128: 4277-88. PMID 11684663  1
2001 Schwechheimer C, Deng XW. COP9 signalosome revisited: a novel mediator of protein degradation. Trends in Cell Biology. 11: 420-6. PMID 11567875 DOI: 10.1016/S0962-8924(01)02091-8  1
2001 Wang H, Ma LG, Li JM, Zhao HY, Deng XW. Direct interaction of Arabidopsis cryptochromes with COP1 in light control development. Science (New York, N.Y.). 294: 154-8. PMID 11509693 DOI: 10.1126/SCIENCE.1063630  0.36
2001 Schwechheimer C, Serino G, Callis J, Crosby WL, Lyapina S, Deshaies RJ, Gray WM, Estelle M, Deng XW. Interactions of the COP9 signalosome with the E3 ubiquitin ligase SCFTIRI in mediating auxin response. Science (New York, N.Y.). 292: 1379-82. PMID 11337587 DOI: 10.1126/Science.1059776  1
2001 Holm M, Hardtke CS, Gaudet R, Deng XW. Identification of a structural motif that confers specific interaction with the WD40 repeat domain of Arabidopsis COP1. The Embo Journal. 20: 118-27. PMID 11226162 DOI: 10.1093/Emboj/20.1.118  1
2001 Peng Z, Staub JM, Serino G, Kwok SF, Kurepa J, Bruce BD, Vierstra RD, Wei N, Deng XW. The cellular level of PR500, a protein complex related to the 19S regulatory particle of the proteasome, is regulated in response to stresses in plants. Molecular Biology of the Cell. 12: 383-92. PMID 11179422 DOI: 10.1091/Mbc.12.2.383  1
2000 Schwechheimer C, Deng XW. The COP/DET/FUS proteins-regulators of eukaryotic growth and development. Seminars in Cell & Developmental Biology. 11: 495-503. PMID 11145879 DOI: 10.1006/Scdb.2000.0203  1
2000 Hardtke CS, Deng XW. The cell biology of the COP/DET/FUS proteins. Regulating proteolysis in photomorphogenesis and beyond? Plant Physiology. 124: 1548-57. PMID 11115873 DOI: 10.1104/Pp.124.4.1548  0.88
2000 Osterlund MT, Wei N, Deng XW. The roles of photoreceptor systems and the COP1-targeted destabilization of HY5 in light control of Arabidopsis seedling development. Plant Physiology. 124: 1520-4. PMID 11115869 DOI: 10.1104/Pp.124.4.1520  1
2000 Hardtke CS, Gohda K, Osterlund MT, Oyama T, Okada K, Deng XW. HY5 stability and activity in arabidopsis is regulated by phosphorylation in its COP1 binding domain. The Embo Journal. 19: 4997-5006. PMID 10990463 DOI: 10.1093/Emboj/19.18.4997  1
2000 Osterlund MT, Hardtke CS, Wei N, Deng XW. Targeted destabilization of HY5 during light-regulated development of Arabidopsis. Nature. 405: 462-6. PMID 10839542 DOI: 10.1038/35013076  1
1999 Stoop-Myer C, Torii KU, McNellis TW, Coleman JE, Deng XW. Short communication: the N-terminal fragment of Arabidopsis photomorphogenic repressor COP1 maintains partial function and acts in a concentration-dependent manner. The Plant Journal : For Cell and Molecular Biology. 20: 713-7. PMID 10652143 DOI: 10.1046/J.1365-313X.1999.00639.X  1
1999 Holm M, Deng XW. Structural organization and interactions of COP1, a light-regulated developmental switch Plant Molecular Biology. 41: 151-158. PMID 10579483 DOI: 10.1023/A:1006324115086  1
1999 Serino G, Tsuge T, Kwok S, Matsui M, Wei N, Deng XW. Arabidopsis cop8 and fus4 mutations define the same gene that encodes subunit 4 of the COP9 signalosome. The Plant Cell. 11: 1967-80. PMID 10521526 DOI: 10.1105/Tpc.11.10.1967  1
1999 Torii KU, Stoop-Myer CD, Okamoto H, Coleman JE, Matsui M, Deng XW. The RING finger motif of photomorphogenic repressor COP1 specifically interacts with the RING-H2 motif of a novel Arabidopsis protein. The Journal of Biological Chemistry. 274: 27674-81. PMID 10488108 DOI: 10.1074/Jbc.274.39.27674  1
1999 Deng XW, Quail PH. Signalling in light-controlled development. Seminars in Cell & Developmental Biology. 10: 121-9. PMID 10441064 DOI: 10.1006/Scdb.1999.0287  0.96
1999 Wei N, Deng XW. Making sense of the COP9 signalosome: A regulatory protein complex conserved from Arabidopsis to human Trends in Genetics. 15: 98-103. PMID 10203806 DOI: 10.1016/S0168-9525(98)01670-9  1
1999 Osterlund MT, Ang LH, Deng XW. The role of COP1 in repression of Arabidopsis photomorphogenic development. Trends in Cell Biology. 9: 113-8. PMID 10201077 DOI: 10.1016/S0962-8924(99)01499-3  1
1998 von Arnim AG, Deng XW, Stacey MG. Cloning vectors for the expression of green fluorescent protein fusion proteins in transgenic plants. Gene. 221: 35-43. PMID 9852947 DOI: 10.1016/S0378-1119(98)00433-8  0.56
1998 Osterlund MT, Deng XW. Multiple photoreceptors mediate the light-induced reduction of GUS-COP1 from Arabidopsis hypocotyl nuclei. The Plant Journal : For Cell and Molecular Biology. 16: 201-8. PMID 9839465 DOI: 10.1046/J.1365-313X.1998.00290.X  1
1998 Kwok SF, Solano R, Tsuge T, Chamovitz DA, Ecker JR, Matsui M, Deng XW. Arabidopsis homologs of a c-Jun coactivator are present both in monomeric form and in the COP9 complex, and their abundance is differentially affected by the pleiotropic cop/det/fus mutations Plant Cell. 10: 1779-1790. PMID 9811788 DOI: 10.1105/Tpc.10.11.1779  1
1998 Torii KU, McNellis TW, Deng XW. Functional dissection of Arabidopsis COP1 reveals specific roles of its three structural modules in light control of seedling development. The Embo Journal. 17: 5577-87. PMID 9755158 DOI: 10.1093/Emboj/17.19.5577  1
1998 Wei N, Tsuge T, Serino G, Dohmae N, Takio K, Matsui M, Deng XW. The COP9 complex is conserved between plants and mammals and is related to the 26S proteasome regulatory complex. Current Biology : Cb. 8: 919-22. PMID 9707402 DOI: 10.1016/S0960-9822(07)00372-7  1
1998 Ang LH, Chattopadhyay S, Wei N, Oyama T, Okada K, Batschauer A, Deng XW. Molecular interaction between COP1 and HY5 defines a regulatory switch for light control of Arabidopsis development. Molecular Cell. 1: 213-22. PMID 9659918 DOI: 10.1016/S1097-2765(00)80022-2  0.96
1997 von Arnim AG, Osterlund MT, Kwok SF, Deng XW. Genetic and developmental control of nuclear accumulation of COP1, a repressor of photomorphogenesis in Arabidopsis. Plant Physiology. 114: 779-88. PMID 9232869 DOI: 10.1104/Pp.114.3.779  1
1997 von Arnim A, Deng XW. A role for transcriptional repression during light control of plant development. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 18: 905-10. PMID 8939068 DOI: 10.1002/Bies.950181109  0.68
1996 Von Arnim A, Deng XW. LIGHT CONTROL OF SEEDLING DEVELOPMENT. Annual Review of Plant Physiology and Plant Molecular Biology. 47: 215-243. PMID 15012288 DOI: 10.1146/annurev.arplant.47.1.215  0.68
1996 Wei N, Deng XW. The role of the COP/DET/FUS genes in light control of arabidopsis seedling development Plant Physiology. 112: 871-878. PMID 8938399 DOI: 10.1104/Pp.112.3.871  1
1996 McNellis TW, Torii KU, Deng XW. Expression of an N-terminal fragment of COP1 confers a dominant-negative effect on light-regulated seedling development in Arabidopsis. The Plant Cell. 8: 1491-503. PMID 8837504 DOI: 10.1105/Tpc.8.9.1491  1
1996 Chamovitz DA, Wei N, Osterlund MT, von Arnim AG, Staub JM, Matsui M, Deng XW. The COP9 complex, a novel multisubunit nuclear regulator involved in light control of a plant developmental switch. Cell. 86: 115-21. PMID 8689678 DOI: 10.1016/S0092-8674(00)80082-3  1
1995 McNellis TW, Deng XW. Light control of seedling morphogenetic pattern Plant Cell. 7: 1749-1761. PMID 8535132 DOI: 10.1105/Tpc.7.11.1749  0.6
1995 Matsui M, Stoop CD, von Arnim AG, Wei N, Deng XW. Arabidopsis COP1 protein specifically interacts in vitro with a cytoskeleton-associated protein, CIP1. Proceedings of the National Academy of Sciences of the United States of America. 92: 4239-43. PMID 7753789 DOI: 10.1073/Pnas.92.10.4239  0.36
1995 Yang Z, Wang J, Fang H, Deng X. Scanning tunnelling microscopy study of martensite in steel Journal of Materials Science Letters. 14: 955-957. DOI: 10.1007/Bf02427475  0.88
1994 Deng XW. Fresh view of light signal transduction in plants Cell. 76: 423-426. PMID 8313465 DOI: 10.1016/0092-8674(94)90107-4  1
1994 Wei N, Kwok SF, Von Arnim AG, Lee A, McNellis TW, Piekos B, Deng XW. Arabidopsis COP8, COP10, and COP11 genes are involved in repression of photomorphogenic development in darkness Plant Cell. 6: 629-643. PMID 8038603 DOI: 10.1105/Tpc.6.5.629  0.6
1994 Arnim AGv, Deng X. Light inactivation of arabidopsis photomorphogenic repressor COP1 involves a cell-specific regulation of its nucleocytoplasmic partitioning Cell. 79: 1035-1045. PMID 8001131 DOI: 10.1016/0092-8674(94)90034-5  1
1994 McNellis TW, Von Arnim AG, Deng XW. Overexpression of arabidopsis COP1 results in partial suppression of light-mediated development: Evidence for a light-inactivable repressor of photomorphogenesis Plant Cell. 6: 1391-1400. PMID 7994173 DOI: 10.1105/Tpc.6.10.1391  0.6
1992 Tonkyn JC, Deng XW, Gruissem W. Regulation of Plastid Gene Expression during Photooxidative Stress. Plant Physiology. 99: 1406-15. PMID 16669052 DOI: 10.1104/Pp.99.4.1406  1
1992 Wei N, Deng XW. COP9: A new genetic locus involved in light-regulated development and gene expression in Arabidopsis Plant Cell. 4: 1507-1518. PMID 1467650 DOI: 10.1105/Tpc.4.12.1507  1
1992 Deng XW, Matsui M, Wei N, Wagner D, Chu AM, Feldmann KA, Quail PH. COP1, an Arabidopsis regulatory gene, encodes a protein with both a zinc-binding motif and a G beta homologous domain. Cell. 71: 791-801. PMID 1423630 DOI: 10.1016/0092-8674(92)90555-Q  1
1991 Deng XW, Caspar T, Quail PH. cop1: a regulatory locus involved in light-controlled development and gene expression in Arabidopsis. Genes & Development. 5: 1172-82. PMID 2065972 DOI: 10.1101/Gad.5.7.1172  0.96
1991 Bruce WB, Deng XW, Quail PH. A negatively acting DNA sequence element mediates phytochrome-directed repression of phyA gene transcription. The Embo Journal. 10: 3015-24. PMID 1915276 DOI: 10.1002/J.1460-2075.1991.Tb07852.X  0.96
1989 Deng XW, Wing RA, Gruissem W. The chloroplast genome exists in multimeric forms. Proceedings of the National Academy of Sciences of the United States of America. 86: 4156-60. PMID 16594051 DOI: 10.1073/Pnas.86.11.4156  1
1989 Deng XW, Tonkyn JC, Peter GF, Thornber JP, Gruissem W. Post-transcriptional control of plastid mRNA accumulation during adaptation of chloroplasts to different light quality environments. The Plant Cell. 1: 645-54. PMID 2535516 DOI: 10.1105/Tpc.1.6.645  1
1988 Deng XW, Gruissem W. Constitutive transcription and regulation of gene expression in non-photosynthetic plastids of higher plants. The Embo Journal. 7: 3301-8. PMID 16453858 DOI: 10.1002/J.1460-2075.1988.Tb03200.X  1
1988 Gruissem W, Barkan A, Deng XW, Stern D. Transcriptional and post-transcriptional control of plastid mRNA levels in higher plants. Trends in Genetics : Tig. 4: 258-63. PMID 3070872 DOI: 10.1016/0168-9525(88)90033-9  1
1987 Deng XW, Stern DB, Tonkyn JC, Gruissem W. Plastid run-on transcription. Application to determine the transcriptional regulation of spinach plastid genes. The Journal of Biological Chemistry. 262: 9641-8. PMID 3597430  1
1987 Deng XW, Gruissem W. Control of plastid gene expression during development: the limited role of transcriptional regulation. Cell. 49: 379-87. PMID 3568130 DOI: 10.1016/0092-8674(87)90290-X  1
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