34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Wilhelmsson PKI, Chandler JO, Fernandez-Pozo N, Graeber K, Ullrich KK, Arshad W, Khan S, Hofberger JA, Buchta K, Edger PP, Pires JC, Schranz ME, Leubner-Metzger G, Rensing SA. Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds. Bmc Genomics. 20: 95. PMID 30700268 DOI: 10.1186/s12864-019-5452-4  0.6
2018 Hao Y, Washburn JD, Rosenthal J, Nielsen B, Lyons E, Edger PP, Pires JC, Conant GC. Patterns of Population Variation in Two Paleopolyploid Eudicot Lineages Suggest That Dosage-Based Selection on Homeologs Is Long-Lived. Genome Biology and Evolution. 10: 999-1011. PMID 29617811 DOI: 10.1093/gbe/evy061  0.6
2018 Emery M, Willis MMS, Hao Y, Barry K, Oakgrove K, Peng Y, Schmutz J, Lyons E, Pires JC, Edger PP, Conant GC. Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization. Plos Genetics. 14: e1007267. PMID 29590103 DOI: 10.1371/journal.pgen.1007267  0.6
2018 Edger PP, Hall JC, Harkess A, Tang M, Coombs J, Mohammadin S, Schranz ME, Xiong Z, Leebens-Mack J, Meyers BC, Sytsma KJ, Koch MA, Al-Shehbaz IA, Pires JC. Brassicales phylogeny inferred from 72 plastid genes: A reanalysis of the phylogenetic localization of two paleopolyploid events and origin of novel chemical defenses. American Journal of Botany. PMID 29574686 DOI: 10.1002/ajb2.1040  0.6
2018 Wang J, Cappa JJ, Harris JP, Edger PP, Zhou W, Pires JC, Adair M, Unruh SA, Simmons MP, Schiavon M, Pilon-Smits EAH. Transcriptome-wide comparison of selenium hyperaccumulator and non-accumulator Stanleya species provides new insight into key processes mediating the hyperaccumulation syndrome. Plant Biotechnology Journal. PMID 29412503 DOI: 10.1111/pbi.12897  0.6
2017 Lopez L, Wolf EM, Pires JC, Edger PP, Koch MA. Molecular Resources from Transcriptomes in the Brassicaceae Family. Frontiers in Plant Science. 8: 1488. PMID 28900436 DOI: 10.3389/fpls.2017.01488  0.6
2017 Edger PP, Smith RD, McKain MR, Cooley AM, Vallejo-Marin M, Yuan YW, Bewick AJ, Ji L, Platts AE, Bowman MJ, Childs K, Washburn JD, Schmitz R, Smith GD, Pires JC, et al. Subgenome dominance in an interspecific hybrid, synthetic allopolyploid, and a 140-year- old naturally established neo-allopolyploid monkeyflower. The Plant Cell. PMID 28814644 DOI: 10.1105/tpc.17.00010  0.6
2017 Mohammadin S, Peterse K, van de Kerke SJ, Chatrou LW, Dönmez AA, Mummenhoff K, Pires JC, Edger PP, Al-Shehbaz IA, Schranz ME. Anatolian origins and diversification of Aethionema, the sister lineage of the core Brassicaceae. American Journal of Botany. PMID 28743759 DOI: 10.3732/ajb.1700091  0.6
2017 Johnson KL, Cassin AM, Lonsdale A, Wong GK, Soltis D, Miles NW, Melkonian M, Melkonian B, Deyholos MK, Leebens-Mack J, Rothfels CJ, Stevenson DW, Graham SW, Wang X, Wu S, ... ... Edger PP, et al. Insights into the evolution of hydroxyproline rich glycoproteins from 1000 plant transcriptomes. Plant Physiology. PMID 28446636 DOI: 10.1104/pp.17.00295  0.6
2016 Golicz AA, Bayer PE, Barker GC, Edger PP, Kim H, Martinez PA, Chan CK, Severn-Ellis A, McCombie WR, Parkin IA, Paterson AH, Pires JC, Sharpe AG, Tang H, Teakle GR, et al. The pangenome of an agronomically important crop plant Brassica oleracea. Nature Communications. 7: 13390. PMID 27834372 DOI: 10.1038/ncomms13390  0.6
2016 Burke SV, Wysocki WP, Zuloaga FO, Craine JM, Pires JC, Edger PP, Mayfield-Jones D, Clark LG, Kelchner SA, Duvall MR. Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae). Bmc Plant Biology. 16: 140. PMID 27316745 DOI: 10.1186/s12870-016-0823-3  0.6
2016 Lane TS, Rempe CS, Davitt J, Staton ME, Peng Y, Soltis DE, Melkonian M, Deyholos M, Leebens-Mack JH, Chase M, Rothfels CJ, Stevenson D, Graham SW, Yu J, Liu T, ... ... Edger PP, et al. Diversity of ABC transporter genes across the plant kingdom and their potential utility in biotechnology. Bmc Biotechnology. 16: 47. PMID 27245738 DOI: 10.1186/s12896-016-0277-6  0.6
2016 Davin N, Edger PP, Hefer CA, Mizrachi E, Schuetz M, Smets E, Myburg AA, Douglas CJ, Schranz ME, Lens F. Functional network analysis of genes differentially expressed during xylogenesis in soc1ful woody Arabidopsis plants. The Plant Journal : For Cell and Molecular Biology. PMID 26952251 DOI: 10.1111/tpj.13157  0.6
2016 Honaas LA, Wafula EK, Wickett NJ, Der JP, Zhang Y, Edger PP, Altman NS, Pires JC, Leebens-Mack JH, dePamphilis CW. Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome. Plos One. 11: e0146062. PMID 26731733 DOI: 10.1371/journal.pone.0146062  0.6
2015 Huang CH, Sun R, Hu Y, Zeng L, Zhang N, Cai L, Zhang Q, Koch MA, Al-Shehbaz I, Edger PP, Pires JC, Tan DY, Zhong Y, Ma H. Resolution of Brassicaceae phylogeny using nuclear genes uncovers nested radiations and supports convergent morphological evolution. Molecular Biology and Evolution. PMID 26516094 DOI: 10.1093/molbev/msv226  0.6
2015 Mohammadin S, Edger PP, Pires JC, Schranz ME. Positionally-conserved but sequence-diverged: identification of long non-coding RNAs in the Brassicaceae and Cleomaceae. Bmc Plant Biology. 15: 217. PMID 26362138 DOI: 10.1186/s12870-015-0603-5  0.6
2015 Cotton JL, Wysocki WP, Clark LG, Kelchner SA, Pires JC, Edger PP, Mayfield-Jones D, Duvall MR. Resolving deep relationships of PACMAD grasses: a phylogenomic approach. Bmc Plant Biology. 15: 178. PMID 26160195 DOI: 10.1186/s12870-015-0563-9  0.6
2015 Edger PP, Heidel-Fischer HM, Bekaert M, Rota J, Glöckner G, Platts AE, Heckel DG, Der JP, Wafula EK, Tang M, Hofberger JA, Smithson A, Hall JC, Blanchette M, Bureau TE, et al. The butterfly plant arms-race escalated by gene and genome duplications. Proceedings of the National Academy of Sciences of the United States of America. PMID 26100883 DOI: 10.1073/pnas.1503926112  0.6
2015 Saarela JM, Wysocki WP, Barrett CF, Soreng RJ, Davis JI, Clark LG, Kelchner SA, Pires JC, Edger PP, Mayfield DR, Duvall MR. Plastid phylogenomics of the cool-season grass subfamily: clarification of relationships among early-diverging tribes. Aob Plants. 7. PMID 25940204 DOI: 10.1093/aobpla/plv046  0.6
2015 Augustin MM, Ruzicka DR, Shukla AK, Augustin JM, Starks CM, O'Neil-Johnson M, McKain MR, Evans BS, Barrett MD, Smithson A, Wong GK, Deyholos MK, Edger PP, Pires JC, Leebens-Mack JH, et al. Elucidating steroid alkaloid biosynthesis in Veratrum californicum: production of verazine in Sf9 cells. The Plant Journal : For Cell and Molecular Biology. 82: 991-1003. PMID 25939370 DOI: 10.1111/tpj.12871  0.6
2014 Floyd SK, Ryan JG, Conway SJ, Brenner E, Burris KP, Burris JN, Chen T, Edger PP, Graham SW, Leebens-Mack JH, Pires JC, Rothfels CJ, Sigel EM, Stevenson DW, Neal Stewart C, et al. Origin of a novel regulatory module by duplication and degeneration of an ancient plant transcription factor. Molecular Phylogenetics and Evolution. 81: 159-73. PMID 25263420 DOI: 10.1016/j.ympev.2014.06.017  0.6
2014 Chalhoub B, Denoeud F, Liu S, Parkin IA, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B, Corréa M, Da Silva C, Just J, Falentin C, Koh CS, ... ... Edger PP, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science (New York, N.Y.). 345: 950-3. PMID 25146293 DOI: 10.1126/science.1253435  0.6
2014 Kagale S, Robinson SJ, Nixon J, Xiao R, Huebert T, Condie J, Kessler D, Clarke WE, Edger PP, Links MG, Sharpe AG, Parkin IA. Polyploid evolution of the Brassicaceae during the Cenozoic era. The Plant Cell. 26: 2777-91. PMID 25035408 DOI: 10.1105/tpc.114.126391  0.6
2014 Delaux PM, Varala K, Edger PP, Coruzzi GM, Pires JC, Ané JM. Comparative phylogenomics uncovers the impact of symbiotic associations on host genome evolution. Plos Genetics. 10: e1004487. PMID 25032823 DOI: 10.1371/journal.pgen.1004487  0.6
2014 Edger PP, Tang M, Bird KA, Mayfield DR, Conant G, Mummenhoff K, Koch MA, Pires JC. Secondary structure analyses of the nuclear rRNA internal transcribed spacers and assessment of its phylogenetic utility across the Brassicaceae (mustards). Plos One. 9: e101341. PMID 24984034 DOI: 10.1371/journal.pone.0101341  0.6
2014 Grewe F, Edger PP, Keren I, Sultan L, Pires JC, Ostersetzer-Biran O, Mower JP. Comparative analysis of 11 Brassicales mitochondrial genomes and the mitochondrial transcriptome of Brassica oleracea. Mitochondrion. 19: 135-43. PMID 24907441 DOI: 10.1016/j.mito.2014.05.008  0.6
2013 Haudry A, Platts AE, Vello E, Hoen DR, Leclercq M, Williamson RJ, Forczek E, Joly-Lopez Z, Steffen JG, Hazzouri KM, Dewar K, Stinchcombe JR, Schoen DJ, Wang X, Schmutz J, ... ... Edger PP, et al. An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions. Nature Genetics. 45: 891-8. PMID 23817568 DOI: 10.1038/ng.2684  0.6
2013 Mayfield-Jones D, Washburn JD, Arias T, Edger PP, Pires JC, Conant GC. Watching the grin fade: tracing the effects of polyploidy on different evolutionary time scales. Seminars in Cell & Developmental Biology. 24: 320-31. PMID 23466286 DOI: 10.1016/j.semcdb.2013.02.002  0.6
2012 Johnson MT, Carpenter EJ, Tian Z, Bruskiewich R, Burris JN, Carrigan CT, Chase MW, Clarke ND, Covshoff S, Depamphilis CW, Edger PP, Goh F, Graham S, Greiner S, Hibberd JM, et al. Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes. Plos One. 7: e50226. PMID 23185583 DOI: 10.1371/journal.pone.0050226  0.6
2012 Bekaert M, Edger PP, Hudson CM, Pires JC, Conant GC. Metabolic and evolutionary costs of herbivory defense: systems biology of glucosinolate synthesis. The New Phytologist. 196: 596-605. PMID 22943527 DOI: 10.1111/j.1469-8137.2012.04302.x  0.6
2012 Schranz ME, Mohammadin S, Edger PP. Ancient whole genome duplications, novelty and diversification: the WGD Radiation Lag-Time Model. Current Opinion in Plant Biology. 15: 147-53. PMID 22480429 DOI: 10.1016/j.pbi.2012.03.011  0.44
2011 Bekaert M, Edger PP, Pires JC, Conant GC. Two-phase resolution of polyploidy in the Arabidopsis metabolic network gives rise to relative and absolute dosage constraints. The Plant Cell. 23: 1719-28. PMID 21540436 DOI: 10.1105/tpc.110.081281  0.6
2010 Duarte JM, Wall PK, Edger PP, Landherr LL, Ma H, Pires JC, Leebens-Mack J, dePamphilis CW. Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels. Bmc Evolutionary Biology. 10: 61. PMID 20181251 DOI: 10.1186/1471-2148-10-61  0.6
2009 Edger PP, Pires JC. Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 17: 699-717. PMID 19802709 DOI: 10.1007/s10577-009-9055-9  0.6
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