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John Edward Bowers - Publications

University of California, Davis, Davis, CA 
 University of Georgia, Athens, Athens, GA, United States 
Genetics, Biology

66 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Bowers JE, Paterson AH. Chromosome number is key to longevity of polyploid lineages. The New Phytologist. PMID 33772797 DOI: 10.1111/nph.17361  1
2018 Hübner S, Bercovich N, Todesco M, Mandel JR, Odenheimer J, Ziegler E, Lee JS, Baute GJ, Owens GL, Grassa CJ, Ebert DP, Ostevik KL, Moyers BT, Yakimowski S, Masalia RR, ... ... Bowers JE, et al. Sunflower pan-genome analysis shows that hybridization altered gene content and disease resistance. Nature Plants. PMID 30598532 DOI: 10.1038/S41477-018-0329-0  1
2018 Zhang J, Zhang X, Tang H, Zhang Q, Hua X, Ma X, Zhu F, Jones T, Zhu X, Bowers J, Wai CM, Zheng C, Shi Y, Chen S, Xu X, et al. Publisher Correction: Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. Nature Genetics. PMID 30425353 DOI: 10.1038/S41588-018-0293-7  1
2017 Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, et al. The asparagus genome sheds light on the origin and evolution of a young Y chromosome. Nature Communications. 8: 1279. PMID 29093472 DOI: 10.1038/S41467-017-01064-8  1
2017 Badouin H, Gouzy J, Grassa CJ, Murat F, Staton SE, Cottret L, Lelandais-Brière C, Owens GL, Carrère S, Mayjonade B, Legrand L, Gill N, Kane NC, Bowers JE, Hubner S, et al. The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution. Nature. 546: 148-152. PMID 28538728 DOI: 10.1038/Nature22380  1
2016 Bowers JE, Pearl SA, Burke JM. Genetic Mapping of Millions of SNPs in Safflower (Carthamus tinctorius L.) via Whole-Genome Resequencing. G3 (Bethesda, Md.). 6: 2203-11. PMID 27226165 DOI: 10.1534/G3.115.026690  1
2016 Waghmare VN, Rong J, Rogers CJ, Bowers JE, Chee PW, Gannaway JR, Katageri I, Paterson AH. Comparative transmission genetics of introgressed chromatin in Gossypium (cotton) polyploids. American Journal of Botany. 103: 719-29. PMID 27056931 DOI: 10.3732/Ajb.1500266  1
2016 Liehr M, Coolbaugh D, Bowers JE, Alferness R, Watts M, Kimerling L, Koch TL. AIM Photonics - What merging photonics with nano-electronics will do 5th Ieee Photonics Society Optical Interconnects Conference, Oi 2016. 22-23. DOI: 10.1109/OIC.2016.7482991  1
2015 Ming R, VanBuren R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J, Biggers E, Zhang J, Huang L, Zhang L, Miao W, Zhang J, et al. The pineapple genome and the evolution of CAM photosynthesis. Nature Genetics. 47: 1435-42. PMID 26523774 DOI: 10.1038/Ng.3435  1
2015 Nambeesan SU, Mandel JR, Bowers JE, Marek LF, Ebert D, Corbi J, Rieseberg LH, Knapp SJ, Burke JM. Association mapping in sunflower (Helianthus annuus L.) reveals independent control of apical vs. basal branching. Bmc Plant Biology. 15: 84. PMID 25887675 DOI: 10.1186/S12870-015-0458-9  1
2015 Hulke BS, Grassa CJ, Bowers JE, Burke JM, Qi L, Talukder ZI, Rieseberg LH. A unified single nucleotide polymorphism map of sunflower (Helianthus annuus l.) derived from current genomic resources Crop Science. 55: 1696-1702. DOI: 10.2135/Cropsci2014.11.0752  1
2015 Stanton EJ, Heck MJR, Bovington J, Spott A, Bowers JE. Ultra-broadband spectral beam combiner Conference On Lasers and Electro-Optics Europe - Technical Digest. 2015. DOI: 10.1364/CLEO_AT.2015.AF1E.3  1
2014 Zhang Q, Li L, VanBuren R, Liu Y, Yang M, Xu L, Bowers JE, Zhong C, Han Y, Li S, Ming R. Optimization of linkage mapping strategy and construction of a high-density American lotus linkage map. Bmc Genomics. 15: 372. PMID 24885335 DOI: 10.1186/1471-2164-15-372  0.01
2014 Barb JG, Bowers JE, Renaut S, Rey JI, Knapp SJ, Rieseberg LH, Burke JM. Chromosomal evolution and patterns of introgression in helianthus. Genetics. 197: 969-79. PMID 24770331 DOI: 10.1534/Genetics.114.165548  1
2014 Pearl SA, Bowers JE, Reyes-Chin-Wo S, Michelmore RW, Burke JM. Genetic analysis of safflower domestication. Bmc Plant Biology. 14: 43. PMID 24502326 DOI: 10.1186/1471-2229-14-43  1
2014 Li J, Tang H, Bowers JE, Ming R, Paterson AH. Insights into the Common Ancestor of Eudicots Advances in Botanical Research. 69: 137-174. DOI: 10.1016/B978-0-12-417163-3.00006-8  1
2013 Ming R, VanBuren R, Liu Y, Yang M, Han Y, Li LT, Zhang Q, Kim MJ, Schatz MC, Campbell M, Li J, Bowers JE, Tang H, Lyons E, Ferguson AA, et al. Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.). Genome Biology. 14: R41. PMID 23663246 DOI: 10.1186/Gb-2013-14-5-R41  1
2013 Renaut S, Grassa CJ, Yeaman S, Moyers BT, Lai Z, Kane NC, Bowers JE, Burke JM, Rieseberg LH. Genomic islands of divergence are not affected by geography of speciation in sunflowers. Nature Communications. 4: 1827. PMID 23652015 DOI: 10.1038/Ncomms2833  1
2013 Mandel JR, Nambeesan S, Bowers JE, Marek LF, Ebert D, Rieseberg LH, Knapp SJ, Burke JM. Association mapping and the genomic consequences of selection in sunflower. Plos Genetics. 9: e1003378. PMID 23555290 DOI: 10.1371/Journal.Pgen.1003378  1
2013 Truco MJ, Ashrafi H, Kozik A, van Leeuwen H, Bowers J, Reyes Chin Wo S, Stoffel K, Xu H, Hill T, Van Deynze A, Michelmore RW. An Ultra High-Density, Transcript-Based, Genetic Map of Lettuce. G3 (Bethesda, Md.). PMID 23550116 DOI: 10.1534/G3.112.004929  1
2012 Bowers JE, Nambeesan S, Corbi J, Barker MS, Rieseberg LH, Knapp SJ, Burke JM. Development of an ultra-dense genetic map of the sunflower genome based on single-feature polymorphisms. Plos One. 7: e51360. PMID 23284684 DOI: 10.1371/Journal.Pone.0051360  1
2012 Paterson AH, Wendel JF, Gundlach H, Guo H, Jenkins J, Jin D, Llewellyn D, Showmaker KC, Shu S, Udall J, Yoo MJ, Byers R, Chen W, Doron-Faigenboim A, Duke MV, ... ... Bowers JE, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature. 492: 423-7. PMID 23257886 DOI: 10.1038/Nature11798  1
2012 Guo Y, Khanal S, Tang S, Bowers JE, Heesacker AF, Khalilian N, Nagy ED, Zhang D, Taylor CA, Stalker HT, Ozias-Akins P, Knapp SJ. Comparative mapping in intraspecific populations uncovers a high degree of macrosynteny between A- and B-genome diploid species of peanut. Bmc Genomics. 13: 608. PMID 23140574 DOI: 10.1186/1471-2164-13-608  1
2012 Nagy ED, Guo Y, Tang S, Bowers JE, Okashah RA, Taylor CA, Zhang D, Khanal S, Heesacker AF, Khalilian N, Farmer AD, Carrasquilla-Garcia N, Penmetsa RV, Cook D, Stalker HT, et al. A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut. Bmc Genomics. 13: 469. PMID 22967170 DOI: 10.1186/1471-2164-13-469  1
2012 Bowers JE, Bachlava E, Brunick RL, Rieseberg LH, Knapp SJ, Burke JM. Development of a 10,000 locus genetic map of the sunflower genome based on multiple crosses. G3 (Bethesda, Md.). 2: 721-9. PMID 22870395 DOI: 10.1534/G3.112.002659  1
2012 Jiao Y, Leebens-Mack J, Ayyampalayam S, Bowers JE, McKain MR, McNeal J, Rolf M, Ruzicka DR, Wafula E, Wickett NJ, Wu X, Zhang Y, Wang J, Zhang Y, Carpenter EJ, et al. A genome triplication associated with early diversification of the core eudicots. Genome Biology. 13: R3. PMID 22280555 DOI: 10.1186/Gb-2012-13-1-R3  0.01
2012 Bachlava E, Taylor CA, Tang S, Bowers JE, Mandel JR, Burke JM, Knapp SJ. SNP discovery and development of a high-density genotyping array for sunflower. Plos One. 7: e29814. PMID 22238659 DOI: 10.1371/Journal.Pone.0029814  1
2011 Wang X, Torres MJ, Pierce G, Lemke C, Nelson LK, Yuksel B, Bowers JE, Marler B, Xiao Y, Lin L, Epps E, Sarazen H, Rogers C, Karunakaran S, Ingles J, et al. A physical map of Brassica oleracea shows complexity of chromosomal changes following recursive paleopolyploidizations. Bmc Genomics. 12: 470. PMID 21955929 DOI: 10.1186/1471-2164-12-470  1
2011 Zuccolo A, Bowers JE, Estill JC, Xiong Z, Luo M, Sebastian A, Goicoechea JL, Collura K, Yu Y, Jiao Y, Duarte J, Tang H, Ayyampalayam S, Rounsley S, Kudrna D, et al. A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure. Genome Biology. 12: R48. PMID 21619600 DOI: 10.1186/Gb-2011-12-5-R48  1
2010 Lin L, Pierce GJ, Bowers JE, Estill JC, Compton RO, Rainville LK, Kim C, Lemke C, Rong J, Tang H, Wang X, Braidotti M, Chen AH, Chicola K, Collura K, et al. A draft physical map of a D-genome cotton species (Gossypium raimondii). Bmc Genomics. 11: 395. PMID 20569427 DOI: 10.1186/1471-2164-11-395  1
2010 Wang J, Roe B, Macmil S, Yu Q, Murray JE, Tang H, Chen C, Najar F, Wiley G, Bowers J, Van Sluys MA, Rokhsar DS, Hudson ME, Moose SP, Paterson AH, et al. Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes. Bmc Genomics. 11: 261. PMID 20416060 DOI: 10.1186/1471-2164-11-261  1
2010 Tang H, Bowers JE, Wang X, Paterson AH. Angiosperm genome comparisons reveal early polyploidy in the monocot lineage. Proceedings of the National Academy of Sciences of the United States of America. 107: 472-7. PMID 19966307 DOI: 10.1073/Pnas.0908007107  1
2009 Yu Q, Tong E, Skelton RL, Bowers JE, Jones MR, Murray JE, Hou S, Guan P, Acob RA, Luo MC, Moore PH, Alam M, Paterson AH, Ming R. A physical map of the papaya genome with integrated genetic map and genome sequence. Bmc Genomics. 10: 371. PMID 19664231 DOI: 10.1186/1471-2164-10-371  1
2009 Wang X, Gowik U, Tang H, Bowers JE, Westhoff P, Paterson AH. Comparative genomic analysis of C4 photosynthetic pathway evolution in grasses. Genome Biology. 10: R68. PMID 19549309 DOI: 10.1186/Gb-2009-10-6-R68  1
2009 Wang X, Tang H, Bowers JE, Paterson AH. Comparative inference of illegitimate recombination between rice and sorghum duplicated genes produced by polyploidization. Genome Research. 19: 1026-32. PMID 19372385 DOI: 10.1101/Gr.087288.108  1
2009 Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, et al. The Sorghum bicolor genome and the diversification of grasses. Nature. 457: 551-6. PMID 19189423 DOI: 10.1038/Nature07723  1
2009 Paterson AH, Bowers JE, Feltus FA, Tang H, Lin L, Wang X. Comparative genomics of grasses promises a bountiful harvest. Plant Physiology. 149: 125-31. PMID 19126703 DOI: 10.1104/Pp.108.129262  1
2009 Jang CS, Kamps TL, Tang H, Bowers JE, Lemke C, Paterson AH. Evolutionary fate of rhizome-specific genes in a non-rhizomatous Sorghum genotype. Heredity. 102: 266-73. PMID 19002204 DOI: 10.1038/Hdy.2008.119  1
2008 Tang H, Wang X, Bowers JE, Ming R, Alam M, Paterson AH. Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps. Genome Research. 18: 1944-54. PMID 18832442 DOI: 10.1101/Gr.080978.108  1
2008 Tang H, Bowers JE, Wang X, Ming R, Alam M, Paterson AH. Synteny and collinearity in plant genomes. Science (New York, N.Y.). 320: 486-8. PMID 18436778 DOI: 10.1126/Science.1153917  1
2008 Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL, Salzberg SL, Feng L, Jones MR, Skelton RL, Murray JE, ... ... Bowers JE, et al. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature. 452: 991-6. PMID 18432245 DOI: 10.1038/Nature06856  1
2007 Wang X, Tang H, Bowers JE, Feltus FA, Paterson AH. Extensive concerted evolution of rice paralogs and the road to regaining independence. Genetics. 177: 1753-63. PMID 18039882 DOI: 10.1534/Genetics.107.073197  1
2007 Wei F, Coe E, Nelson W, Bharti AK, Engler F, Butler E, Kim H, Goicoechea JL, Chen M, Lee S, Fuks G, Sanchez-Villeda H, Schroeder S, Fang Z, McMullen M, ... ... Bowers JE, et al. Physical and genetic structure of the maize genome reflects its complex evolutionary history. Plos Genetics. 3: e123. PMID 17658954 DOI: 10.1371/Journal.Pgen.0030123  1
2006 Paterson AH, Chapman BA, Kissinger JC, Bowers JE, Feltus FA, Estill JC. Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon. Trends in Genetics : Tig. 22: 597-602. PMID 16979781 DOI: 10.1016/J.Tig.2006.09.003  1
2006 Leebens-Mack J, Vision T, Brenner E, Bowers JE, Cannon S, Clement MJ, Cunningham CW, dePamphilis C, deSalle R, Doyle JJ, Eisen JA, Gu X, Harshman J, Jansen RK, Kellogg EA, et al. Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). Omics : a Journal of Integrative Biology. 10: 231-7. PMID 16901231 DOI: 10.1089/Omi.2006.10.231  1
2006 Chapman BA, Bowers JE, Feltus FA, Paterson AH. Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication. Proceedings of the National Academy of Sciences of the United States of America. 103: 2730-5. PMID 16467140 DOI: 10.1073/Pnas.0507782103  1
2006 Bethel CM, Sciara EB, Estill JC, Bowers JE, Hanna W, Paterson AH. A framework linkage map of bermudagrass (Cynodon dactylon x transvaalensis) based on single-dose restriction fragments. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 112: 727-37. PMID 16395568 DOI: 10.1007/S00122-005-0177-Y  1
2005 Bowers JE, Arias MA, Asher R, Avise JA, Ball RT, Brewer GA, Buss RW, Chen AH, Edwards TM, Estill JC, Exum HE, Goff VH, Herrick KL, Steele CL, Karunakaran S, et al. Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses. Proceedings of the National Academy of Sciences of the United States of America. 102: 13206-11. PMID 16141333 DOI: 10.1073/Pnas.0502365102  1
2005 Rong J, Bowers JE, Schulze SR, Waghmare VN, Rogers CJ, Pierce GJ, Zhang H, Estill JC, Paterson AH. Comparative genomics of Gossypium and Arabidopsis: unraveling the consequences of both ancient and recent polyploidy. Genome Research. 15: 1198-210. PMID 16109973 DOI: 10.1101/Gr.3907305  1
2005 Morrell PL, Williams-Coplin TD, Lattu AL, Bowers JE, Chandler JM, Paterson AH. Crop-to-weed introgression has impacted allelic composition of johnsongrass populations with and without recent exposure to cultivated sorghum. Molecular Ecology. 14: 2143-54. PMID 15910333 DOI: 10.1111/J.1365-294X.2005.02579.X  1
2005 Casa AM, Mitchell SE, Hamblin MT, Sun H, Bowers JE, Paterson AH, Aquadro CF, Kresovich S. Diversity and selection in sorghum: simultaneous analyses using simple sequence repeats. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 111: 23-30. PMID 15864526 DOI: 10.1007/S00122-005-1952-5  1
2005 Yüksel B, Bowers JE, Estill J, Goff L, Lemke C, Paterson AH. Exploratory integration of peanut genetic and physical maps and possible contributions from Arabidopsis Theoretical and Applied Genetics. 111: 87-94. PMID 15809848 DOI: 10.1007/S00122-005-1994-8  1
2005 Paterson AH, Bowers JE, Van de Peer Y, Vandepoele K. Ancient duplication of cereal genomes. The New Phytologist. 165: 658-61. PMID 15720677 DOI: 10.1111/J.1469-8137.2005.01347.X  1
2004 Paterson AH, Bowers JE, Chapman BA. Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics. Proceedings of the National Academy of Sciences of the United States of America. 101: 9903-8. PMID 15161969 DOI: 10.1073/Pnas.0307901101  1
2004 Paterson AH, Bowers JE, Chapman BA, Peterson DG, Rong J, Wicker TM. Comparative genome analysis of monocots and dicots, toward characterization of angiosperm diversity. Current Opinion in Biotechnology. 15: 120-5. PMID 15081049 DOI: 10.1016/J.Copbio.2004.03.001  1
2004 Rong J, Abbey C, Bowers JE, Brubaker CL, Chang C, Chee PW, Delmonte TA, Ding X, Garza JJ, Marler BS, Park CH, Pierce GJ, Rainey KM, Rastogi VK, Schulze SR, et al. A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium). Genetics. 166: 389-417. PMID 15020432 DOI: 10.1534/Genetics.166.1.389  1
2004 Chapman BA, Bowers JE, Schulze SR, Paterson AH. A comparative phylogenetic approach for dating whole genome duplication events. Bioinformatics (Oxford, England). 20: 180-5. PMID 14734308 DOI: 10.1093/Bioinformatics/Bth022  1
2003 Paterson AH, Bowers JE, Peterson DG, Estill JC, Chapman BA. Structure and evolution of cereal genomes. Current Opinion in Genetics & Development. 13: 644-50. PMID 14638328 DOI: 10.1016/J.Gde.2003.10.002  1
2003 Bowers JE, Abbey C, Anderson S, Chang C, Draye X, Hoppe AH, Jessup R, Lemke C, Lennington J, Li Z, Lin YR, Liu SC, Luo L, Marler BS, Ming R, et al. A high-density genetic recombination map of sequence-tagged sites for sorghum, as a framework for comparative structural and evolutionary genomics of tropical grains and grasses. Genetics. 165: 367-86. PMID 14504243  1
2003 Bowers JE, Chapman BA, Rong J, Paterson AH. Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature. 422: 433-8. PMID 12660784 DOI: 10.1038/Nature01521  1
2002 Cone KC, McMullen MD, Bi IV, Davis GL, Yim YS, Gardiner JM, Polacco ML, Sanchez-Villeda H, Fang Z, Schroeder SG, Havermann SA, Bowers JE, Paterson AH, Soderlund CA, Engler FW, et al. Genetic, physical, and informatics resources for maize. On the road to an integrated map. Plant Physiology. 130: 1598-605. PMID 12481043 DOI: 10.1104/Pp.012245  1
2002 Peterson DG, Schulze SR, Sciara EB, Lee SA, Bowers JE, Nagel A, Jiang N, Tibbitts DC, Wessler SR, Paterson AH. Integration of Cot analysis, DNA cloning, and high-throughput sequencing facilitates genome characterization and gene discovery. Genome Research. 12: 795-807. PMID 11997346 DOI: 10.1101/Gr.226102  1
2001 Draye X, Lin YR, Qian XY, Bowers JE, Burow GB, Morrell PL, Peterson DG, Presting GG, Ren SX, Wing RA, Paterson AH. Toward integration of comparative genetic, physical, diversity, and cytomolecular maps for grasses and grains, using the sorghum genome as a foundation. Plant Physiology. 125: 1325-41. PMID 11244113 DOI: 10.1104/Pp.125.3.1325  1
2000 Paterson AH, Bowers JE, Burow MD, Draye X, Elsik CG, Jiang CX, Katsar CS, Lan TH, Lin YR, Ming R, Wright RJ. Comparative genomics of plant chromosomes Plant Cell. 12: 1523-1539. PMID 11006329 DOI: 10.1105/Tpc.12.9.1523  1
1997 Bowers JE, Meredith CP. The parentage of a classic wine grape, Cabernet Sauvignon. Nature Genetics. 16: 84-7. PMID 9140400 DOI: 10.1038/Ng0597-84  1
1996 Bowers JE, Dangl GS, Vignani R, Meredith CP. Isolation and characterization of new polymorphic simple sequence repeat loci in grape (Vitis vinifera L.). Genome. 39: 628-33. PMID 18469922 DOI: 10.1139/G96-080  1
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