Charles C. Davis - Publications

Affiliations: 
Organismic and Evolutionary Biology Harvard University, Cambridge, MA, United States 

129 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Deans AR, Nastasi LF, Davis C. GallOnt: An ontology for plant gall phenotypes. Biodiversity Data Journal. 12: e128585. PMID 39229384 DOI: 10.3897/BDJ.12.e128585  0.338
2024 Yan Y, da Fonseca RR, Rahbek C, Borregaard MK, Davis CC. A new nuclear phylogeny of the tea family (Theaceae) unravels rapid radiations in genus Camellia. Molecular Phylogenetics and Evolution. 108089. PMID 38679302 DOI: 10.1016/j.ympev.2024.108089  0.336
2024 Rana SK, Rana HK, Landis JB, Kuang T, Chen J, Wang H, Deng T, Davis CC, Sun H. Pleistocene glaciation advances the cryptic speciation of Stellera chamaejasme L. in a major biodiversity hotspot. Journal of Integrative Plant Biology. PMID 38639466 DOI: 10.1111/jipb.13663  0.42
2024 Peng S, Ramirez-Parada TH, Mazer SJ, Record S, Park I, Ellison AM, Davis CC. Incorporating plant phenological responses into species distribution models reduces estimates of future species loss and turnover. The New Phytologist. PMID 38531810 DOI: 10.1111/nph.19698  0.384
2024 Davis CC, Choisy P. Medicinal plants meet modern biodiversity science. Current Biology : Cb. 34: R158-R173. PMID 38412829 DOI: 10.1016/j.cub.2023.12.038  0.324
2023 Liu L, Yu L, Wu S, Arnold J, Whalen C, Davis C, Edwards S. Short branch attraction in phylogenomic inference under the multispecies coalescent. Frontiers in Ecology and Evolution. 11. PMID 39233780 DOI: 10.3389/fevo.2023.1134764  0.354
2023 Almeida EAB, Bossert S, Danforth BN, Porto DS, Freitas FV, Davis CC, Murray EA, Blaimer BB, Spasojevic T, Ströher PR, Orr MC, Packer L, Brady SG, Kuhlmann M, Branstetter MG, et al. The evolutionary history of bees in time and space. Current Biology : Cb. PMID 37506702 DOI: 10.1016/j.cub.2023.07.005  0.366
2023 Park DS, Xie Y, Ellison AM, Lyra GM, Davis CC. Complex climate-mediated effects of urbanization on plant reproductive phenology and frost risk. The New Phytologist. PMID 36942966 DOI: 10.1111/nph.18893  0.311
2023 Barreto de Jesus P, de Mattos Lyra G, Zhang H, Toyota Fujii M, Nauer F, Marcos de Castro Nunes J, Davis CC, Cabral Oliveira M. Phylogenomics and taxon-rich phylogenies of new and historical specimens shed light on the systematics of Hypnea (Cystocloniaceae, Rhodophyta). Molecular Phylogenetics and Evolution. 107752. PMID 36893930 DOI: 10.1016/j.ympev.2023.107752  0.348
2023 Jenny LA, Shapiro LR, Davis CC, Jonathan Davies T, Pierce NE, Meineke E. Herbarium specimens reveal herbivory patterns across the genus Cucurbita. American Journal of Botany. PMID 36633920 DOI: 10.1002/ajb2.16126  0.344
2022 Ma Y, Mao X, Wang J, Zhang L, Jiang Y, Geng Y, Ma T, Cai L, Huang S, Hollingsworth P, Mao K, Kang M, Li Y, Yang W, Wu H, ... ... Davis CC, et al. Pervasive hybridization during evolutionary radiation of subgenus in mountains of southwest China. National Science Review. 9: nwac276. PMID 36687562 DOI: 10.1093/nsr/nwac276  0.753
2022 Davis CC. The herbarium of the future. Trends in Ecology & Evolution. PMID 36549958 DOI: 10.1016/j.tree.2022.11.015  0.317
2022 Albani Rocchetti G, Carta A, Mondoni A, Godefroid S, Davis CC, Caneva G, Albrecht MA, Alvarado K, Bijmoer R, Borosova R, Bräeuchler C, Breman E, Briggs M, Buord S, Cave LH, et al. Selecting the best candidates for resurrecting extinct-in-the-wild plants from herbaria. Nature Plants. 8: 1385-1393. PMID 36536014 DOI: 10.1038/s41477-022-01296-7  0.349
2022 Zhang YM, Sheikh SI, Ward AKG, Forbes AA, Prior KM, Stone GN, Gates MW, Egan SP, Zhang L, Davis C, Weinersmith KL, Melika G, Lucky A. Delimiting the cryptic diversity and host preferences of Sycophila parasitoid wasps associated with oak galls using phylogenomic data. Molecular Ecology. PMID 35762844 DOI: 10.1111/mec.16582  0.397
2022 Xiong H, Wang D, Shao C, Yang X, Yang J, Ma T, Davis CC, Liu L, Xi Z. Species Tree Estimation and the Impact of Gene Loss Following Whole-Genome Duplication. Systematic Biology. PMID 35689633 DOI: 10.1093/sysbio/syac040  0.653
2022 Davis CC, Lyra GM, Park DS, Asprino R, Maruyama R, Torquato D, Cook BI, Ellison AM. New directions in tropical phenology. Trends in Ecology & Evolution. PMID 35680467 DOI: 10.1016/j.tree.2022.05.001  0.354
2021 Daru BH, Davies TJ, Willis CG, Meineke EK, Ronk A, Zobel M, Pärtel M, Antonelli A, Davis CC. Widespread homogenization of plant communities in the Anthropocene. Nature Communications. 12: 6983. PMID 34873159 DOI: 10.1038/s41467-021-27186-8  0.783
2021 Park DS, Breckheimer IK, Ellison AM, Lyra GM, Davis CC. Phenological displacement is uncommon among sympatric angiosperms. The New Phytologist. PMID 34626123 DOI: 10.1111/nph.17784  0.38
2021 M Lyra G, Iha C, Grassa CJ, Cai L, Zhang H, Lane C, Blouin N, Oliveira MC, Marcos de Castro Nunes J, Davis CC. Phylogenomics, divergence time estimation and trait evolution provide a new look into the Gracilariales (Rhodophyta). Molecular Phylogenetics and Evolution. 107294. PMID 34419587 DOI: 10.1016/j.ympev.2021.107294  0.765
2021 Thorogood CJ, Teixeira-Costa L, Ceccantini G, Davis C, Hiscock SJ. Endoparasitic plants and fungi show evolutionary convergence across phylogenetic divisions. The New Phytologist. PMID 34251722 DOI: 10.1111/nph.17556  0.3
2021 Nitta JH, Watkins JE, Holbrook NM, Wang TW, Davis CC. Ecophysiological differentiation between life stages in filmy ferns (Hymenophyllaceae). Journal of Plant Research. PMID 34117960 DOI: 10.1007/s10265-021-01318-z  0.775
2021 Yan Y, Davis CC, Dimitrov D, Wang Z, Rahbek C, Borregaard MK. Phytogeographic history of the Tea family inferred through high-resolution phylogeny and fossils. Systematic Biology. PMID 34109420 DOI: 10.1093/sysbio/syab042  0.368
2021 Teixeira-Costa L, Davis CC, Ceccantini G. Striking developmental convergence in angiosperm endoparasites. American Journal of Botany. PMID 33988869 DOI: 10.1002/ajb2.1658  0.305
2021 Meineke EK, Davis CC, Davies TJ. Phenological sensitivity to temperature mediates herbivory. Global Change Biology. PMID 33735502 DOI: 10.1111/gcb.15600  0.325
2021 Cai L, Arnold BJ, Xi Z, Khost DE, Patel N, Hartmann CB, Manickam S, Sasirat S, Nikolov LA, Mathews S, Sackton TB, Davis CC. Deeply Altered Genome Architecture in the Endoparasitic Flowering Plant Sapria himalayana Griff. (Rafflesiaceae). Current Biology : Cb. PMID 33485466 DOI: 10.1016/j.cub.2020.12.045  0.809
2020 Cai L, Xi Z, Lemmon EM, Lemmon AR, Mast A, Buddenhagen CE, Liu L, Davis CC. The Perfect Storm: Gene Tree Estimation Error, Incomplete Lineage Sorting, and Ancient Gene Flow Explain the Most Recalcitrant Ancient Angiosperm Clade, Malpighiales. Systematic Biology. PMID 33169797 DOI: 10.1093/sysbio/syaa083  0.598
2020 Davis CC, Champ J, Park DS, Breckheimer I, Lyra GM, Xie J, Joly A, Tarapore D, Ellison AM, Bonnet P. A New Method for Counting Reproductive Structures in Digitized Herbarium Specimens Using Mask R-CNN. Frontiers in Plant Science. 11: 1129. PMID 32849691 DOI: 10.3389/Fpls.2020.01129  0.402
2020 Pearson KD, Nelson G, Aronson MFJ, Bonnet P, Brenskelle L, Davis CC, Denny EG, Ellwood ER, Goëau H, Heberling JM, Joly A, Lorieul T, Mazer SJ, Meineke EK, Stucky BJ, et al. Machine Learning Using Digitized Herbarium Specimens to Advance Phenological Research. Bioscience. 70: 610-620. PMID 32665738 DOI: 10.1093/Biosci/Biaa044  0.363
2020 Li H, Liu B, Davis CC, Yang Y. Plastome phylogenomics, systematics, and divergence time estimation of the Beilschmiedia group (Lauraceae). Molecular Phylogenetics and Evolution. 106901. PMID 32619568 DOI: 10.1016/J.Ympev.2020.106901  0.469
2020 Segovia RA, Pennington RT, Baker TR, Coelho de Souza F, Neves DM, Davis CC, Armesto JJ, Olivera-Filho AT, Dexter KG. Freezing and water availability structure the evolutionary diversity of trees across the Americas. Science Advances. 6: eaaz5373. PMID 32494713 DOI: 10.1126/Sciadv.Aaz5373  0.461
2020 Park DS, Willis CG, Xi Z, Kartesz JT, Davis CC, Worthington S. Machine Learning Predicts Large Scale Declines in Native Plant Phylogenetic Diversity. The New Phytologist. PMID 32339295 DOI: 10.1111/Nph.16621  0.662
2020 Nitta JH, Watkins JE, Davis CC. Life in the canopy: community trait assessments reveal substantial functional diversity among fern epiphytes. The New Phytologist. PMID 32285944 DOI: 10.1111/Nph.16607  0.797
2020 Povilus RA, DaCosta JM, Grassa C, Satyaki PRV, Moeglein M, Jaenisch J, Xi Z, Mathews S, Gehring M, Davis CC, Friedman WE. Water lily () genome reveals variable genomic signatures of ancient vascular cambium losses. Proceedings of the National Academy of Sciences of the United States of America. PMID 32234787 DOI: 10.1073/Pnas.1922873117  0.803
2020 Yang Y, Sun P, Lv L, Wang D, Ru D, Li Y, Ma T, Zhang L, Shen X, Meng F, Jiao B, Shan L, Liu M, Wang Q, Qin Z, ... ... Davis CC, et al. Prickly waterlily and rigid hornwort genomes shed light on early angiosperm evolution. Nature Plants. PMID 32094642 DOI: 10.1038/S41477-020-0594-6  0.664
2020 Hedrick BP, Heberling JM, Meineke EK, Turner KG, Grassa CJ, Park DS, Kennedy J, Clarke JA, Cook JA, Blackburn DC, Edwards SV, Davis CC. Digitization and the future of natural history collections Bioscience. 70: 243-251. DOI: 10.7287/Peerj.Preprints.27859V1  0.708
2020 DeSisto CMM, Park DS, Davis CC, Ramananjato V, Tonos JL, Razafindratsima OH. An invasive species spread by threatened diurnal lemurs impacts rainforest structure in Madagascar Biological Invasions. 22: 2845-2858. DOI: 10.1007/S10530-020-02293-7  0.787
2019 Liu X, Fu W, Tang Y, Zhang W, Song Z, Li L, Yang J, Ma H, Yang J, Zhou C, Davis CC, Wang Y. Diverse trajectories of plastome degradation in holoparasitic Cistanche and the whereabouts of the lost plastid genes. Journal of Experimental Botany. PMID 31639183 DOI: 10.1093/Jxb/Erz456  0.484
2019 Marinho LC, Cai L, Duan X, Ruhfel BR, Fiaschi P, Amorim AM, van den Berg C, Davis CC. Plastomes resolve generic limits within tribe Clusieae (Clusiaceae) and reveal the new genus Arawakia. Molecular Phylogenetics and Evolution. PMID 30743062 DOI: 10.1016/J.Ympev.2019.02.005  0.79
2018 Park DS, Breckheimer I, Williams AC, Law E, Ellison AM, Davis CC. Herbarium specimens reveal substantial and unexpected variation in phenological sensitivity across the eastern United States. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374. PMID 30455212 DOI: 10.1098/Rstb.2017.0394  0.497
2018 Meineke EK, Davies TJ, Daru BH, Davis CC. Biological collections for understanding biodiversity in the Anthropocene. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374. PMID 30455204 DOI: 10.1098/Rstb.2017.0386  0.753
2018 Cai L, Xi Z, Amorim AM, Sugumaran M, Rest JS, Liu L, Davis CC. Widespread ancient whole-genome duplications in Malpighiales coincide with Eocene global climatic upheaval. The New Phytologist. PMID 30030969 DOI: 10.1111/Nph.15357  0.675
2018 Iha C, Grassa CJ, de M Lyra G, Davis CC, Verbruggen H, Oliveira MC. Organellar genomics: a useful tool to study evolutionary relationships and molecular evolution in Gracilariaceae (Rhodophyta). Journal of Phycology. PMID 29989670 DOI: 10.1111/Jpy.12765  0.756
2018 Yost JM, Sweeney PW, Gilbert E, Nelson G, Guralnick R, Gallinat AS, Ellwood ER, Rossington N, Willis CG, Blum SD, Walls RL, Haston EM, Denslow MW, Zohner CM, Morris AB, ... ... Davis CC, et al. Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants. Applications in Plant Sciences. 6: e1022. PMID 29732253 DOI: 10.1002/Aps3.1022  0.374
2018 Nitta JH, Amer S, Davis CC. Microsorum × tohieaense (Polypodiaceae), a New Hybrid Fern from French Polynesia, with Implications for the Taxonomy of Microsorum Systematic Botany. 43: 397-413. DOI: 10.1600/036364418X697166  0.303
2018 Park DS, Ellison AM, Davis CC. Mating system does not predict niche breath Global Ecology and Biogeography. 27: 804-813. DOI: 10.1111/Geb.12740  0.483
2018 Meseguer AS, Lobo JM, Cornuault J, Beerling D, Ruhfel BR, Davis CC, Jousselin E, Sanmartín I. Reconstructing deep-time palaeoclimate legacies in the clusioid Malpighiales unveils their role in the evolution and extinction of the boreotropical flora Global Ecology and Biogeography. 27: 616-628. DOI: 10.1111/Geb.12724  0.722
2017 Barkman TJ, Klooster MR, Gaddis KD, Franzone B, Calhoun S, Manickam S, Vessabutr S, Sasirat S, Davis CC. Reading between the vines: Hosts as islands for extreme holoparasitic plants. American Journal of Botany. 104: 1382-1389. PMID 29885244 DOI: 10.3732/Ajb.1700117  0.391
2017 Pearse WD, Davis CC, Inouye DW, Primack RB, Davies TJ. A statistical estimator for determining the limits of contemporary and historic phenology. Nature Ecology & Evolution. PMID 29109468 DOI: 10.1038/S41559-017-0350-0  0.407
2017 Daru BH, Park DS, Primack RB, Willis CG, Barrington DS, Whitfeld TJS, Seidler TG, Sweeney PW, Foster DR, Ellison AM, Davis CC. Widespread sampling biases in herbaria revealed from large-scale digitization. The New Phytologist. PMID 29083043 DOI: 10.1111/Nph.14855  0.745
2017 Lagomarsino LP, Forrestel EJ, Muchhala N, Davis CC. Repeated evolution of vertebrate pollination syndromes in a recently diverged Andean plant clade. Evolution; International Journal of Organic Evolution. PMID 28640437 DOI: 10.1111/Evo.13297  0.784
2017 Willis CG, Ellwood ER, Primack RB, Davis CC, Pearson KD, Gallinat AS, Yost JM, Nelson G, Mazer SJ, Rossington NL, Sparks TH, Soltis PS. Old Plants, New Tricks: Phenological Research Using Herbarium Specimens. Trends in Ecology & Evolution. PMID 28465044 DOI: 10.1016/J.Tree.2017.03.015  0.407
2017 Willis CG, Law E, Williams AC, Franzone BF, Bernardos R, Bruno L, Hopkins C, Schorn C, Weber E, Park DS, Davis CC. CrowdCurio: an online crowdsourcing platform to facilitate climate change studies using herbarium specimens. The New Phytologist. PMID 28394023 DOI: 10.1111/Nph.14535  0.442
2017 Nikolov LA, Davis CC. The big, the bad, and the beautiful: Biology of the world's largest flowers Journal of Systematics and Evolution. 55: 516-524. DOI: 10.1111/Jse.12260  0.442
2017 Park DS, Davis CC. Implications and alternatives of assigning climate data to geographical centroids Journal of Biogeography. 44: 2188-2198. DOI: 10.1111/Jbi.13029  0.407
2017 Nitta JH, Meyer J, Taputuarai R, Davis CC. Life cycle matters: DNA barcoding reveals contrasting community structure between fern sporophytes and gametophytes Ecological Monographs. 87: 278-296. DOI: 10.1002/Ecm.1246  0.42
2016 Cai L, Xi Z, Peterson K, Rushworth C, Beaulieu J, Davis CC. Phylogeny of Elatinaceae and the Tropical Gondwanan Origin of the Centroplacaceae(Malpighiaceae, Elatinaceae) Clade. Plos One. 11: e0161881. PMID 27684711 DOI: 10.1371/Journal.Pone.0161881  0.756
2016 De M Lyra G, Gurgel CF, Da S Costa E, De Jesus PB, Oliveira MC, De Oliveira EC, Davis CC, De Castro Nunes JM. Delimitating cryptic species in the Gracilaria domingensis complex (Gracilariaceae, Rhodophyta) using molecular and morphological data. Journal of Phycology. PMID 27485203 DOI: 10.1111/Jpy.12456  0.452
2016 Ruhfel BR, Bove CP, Philbrick CT, Davis CC. Dispersal largely explains the Gondwanan distribution of the ancient tropical clusioid plant clade. American Journal of Botany. PMID 27335391 DOI: 10.3732/Ajb.1500537  0.755
2016 Bardon L, Sothers C, Prance GT, Malé PG, Xi Z, Davis CC, Murienne J, García-Villacorta R, Coissac E, Lavergne S, Chave J. Unraveling the biogeographical history of Chrysobalanaceae from plastid genomes. American Journal of Botany. PMID 27329943 DOI: 10.3732/Ajb.1500463  0.662
2016 Lagomarsino LP, Condamine FL, Antonelli A, Mulch A, Davis CC. The abiotic and biotic drivers of rapid diversification in Andean bellflowers (Campanulaceae). The New Phytologist. PMID 26990796 DOI: 10.1111/Nph.13920  0.762
2016 Schorn C, Weber E, Bernardos R, Hopkins C, Davis C. The New England Vascular Plants Project: 295,000 specimens and counting Rhodora. 118: 324-325. DOI: 10.3119/15-34  0.316
2016 Zhang W, Kramer EM, Davis CC. Differential expression of CYC2 genes and the elaboration of floral morphologies in Hiptage, an old world genus of Malpighiaceae International Journal of Plant Sciences. 177: 551-558. DOI: 10.1086/687225  0.348
2015 Lyra GM, Costa ED, de Jesus PB, de Matos JC, Caires TA, Oliveira MC, Oliveira EC, Xi Z, Nunes JM, Davis CC. Phylogeny of Gracilariaceae (Rhodophyta): evidence from plastid and mitochondrial nucleotide sequences. Journal of Phycology. 51: 356-366. PMID 26986530 DOI: 10.1111/Jpy.12281  0.675
2015 Xi Z, Liu L, Davis CC. The impact of missing data on species tree estimation. Molecular Biology and Evolution. PMID 26589995 DOI: 10.1093/Molbev/Msv266  0.635
2015 Edwards SV, Xi Z, Janke A, Faircloth BC, McCormack JE, Glenn TC, Zhong B, Wu S, Lemmon EM, Lemmon AR, Leaché AD, Liu L, Davis CC. Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics. Molecular Phylogenetics and Evolution. PMID 26518740 DOI: 10.1016/J.Ympev.2015.10.027  0.596
2015 Davis CC, Willis CG, Connolly B, Kelly C, Ellison AM. Herbarium records are reliable sources of phenological change driven by climate and provide novel insights into species' phenological cueing mechanisms. American Journal of Botany. 102: 1599-609. PMID 26451038 DOI: 10.3732/Ajb.1500237  0.408
2015 Xi Z, Liu L, Davis CC. Genes with minimal phylogenetic information are problematic for coalescent analyses when gene tree estimation is biased. Molecular Phylogenetics and Evolution. 92: 63-71. PMID 26115844 DOI: 10.1016/J.Ympev.2015.06.009  0.626
2015 Davis CC, Xi Z. Horizontal gene transfer in parasitic plants. Current Opinion in Plant Biology. 26: 14-9. PMID 26051213 DOI: 10.1016/J.Pbi.2015.05.008  0.674
2015 Veller C, Nowak MA, Davis CC. Extended flowering intervals of bamboos evolved by discrete multiplication. Ecology Letters. 18: 653-9. PMID 25963600 DOI: 10.1111/Ele.12442  0.38
2015 Liu L, Xi Z, Wu S, Davis CC, Edwards SV. Estimating phylogenetic trees from genome-scale data. Annals of the New York Academy of Sciences. PMID 25873435 DOI: 10.1111/Nyas.12747  0.694
2015 Willis CG, Franzone BF, Xi Z, Davis CC. Corrigendum to: The establishment of Central American migratory corridors and the biogeographic origins of seasonally dry tropical forests in Mexico. Frontiers in Genetics. 6: 64. PMID 25759718 DOI: 10.3389/Fgene.2015.00064  0.566
2015 Liu L, Xi Z, Davis CC. Coalescent methods are robust to the simultaneous effects of long branches and incomplete lineage sorting. Molecular Biology and Evolution. 32: 791-805. PMID 25431481 DOI: 10.1093/Molbev/Msu331  0.63
2015 Farnsworth E, Bajcz A, Drummond F, Bellemare J, Deeg C, Sax DF, Early R, Bertin RI, McKenna KR, Searcy KB, Hickler MG, Motzkin G, Bradley PM, Marino J, Parmentier B, ... ... Davis CC, et al. NEBC 120th Anniversary Botanical Research Conference Presentations Rhodora. 117: 507-541. DOI: 10.3119/15-25  0.669
2015 Lyra GdM, Costa EdS, de Jesus PB, de Matos JCG, Caires TA, Oliveira MC, Oliveira EC, Xi Z, Nunes JMdC, Davis CC. Phylogeny of Gracilariaceae (Rhodophyta): Evidence from plastid and mitochondrial nucleotide sequences Journal of Phycology. 51: 356-366. DOI: 10.1111/jpy.12281  0.51
2014 Willis CG, Franzone BF, Xi Z, Davis CC. The establishment of Central American migratory corridors and the biogeographic origins of seasonally dry tropical forests in Mexico. Frontiers in Genetics. 5: 433. PMID 25566320 DOI: 10.3389/Fgene.2014.00433  0.709
2014 Lagomarsino LP, Antonelli A, Muchhala N, Timmermann A, Mathews S, Davis CC. Phylogeny, classification, and fruit evolution of the species-rich Neotropical bellflowers (Campanulaceae: Lobelioideae). American Journal of Botany. 101: 2097-112. PMID 25480707 DOI: 10.3732/Ajb.1400339  0.77
2014 Horn JW, Xi Z, Riina R, Peirson JA, Yang Y, Dorsey BL, Berry PE, Davis CC, Wurdack KJ. Evolutionary bursts in Euphorbia (Euphorbiaceae) are linked with photosynthetic pathway. Evolution; International Journal of Organic Evolution. 68: 3485-504. PMID 25302554 DOI: 10.1111/Evo.12534  0.645
2014 Xi Z, Liu L, Rest JS, Davis CC. Coalescent versus concatenation methods and the placement of Amborella as sister to water lilies. Systematic Biology. 63: 919-32. PMID 25077515 DOI: 10.1093/Sysbio/Syu055  0.669
2014 Panchen ZA, Primack RB, Nordt B, Ellwood ER, Stevens AD, Renner SS, Willis CG, Fahey R, Whittemore A, Du Y, Davis CC. Leaf out times of temperate woody plants are related to phylogeny, deciduousness, growth habit and wood anatomy. The New Phytologist. 203: 1208-19. PMID 24942252 DOI: 10.1111/Nph.12892  0.513
2014 Nikolov LA, Tomlinson PB, Manickam S, Endress PK, Kramer EM, Davis CC. Holoparasitic Rafflesiaceae possess the most reduced endophytes and yet give rise to the world's largest flowers. Annals of Botany. 114: 233-42. PMID 24942001 DOI: 10.1093/Aob/Mcu114  0.779
2014 Davis CC, Schaefer H, Xi Z, Baum DA, Donoghue MJ, Harmon LJ. Long-term morphological stasis maintained by a plant-pollinator mutualism. Proceedings of the National Academy of Sciences of the United States of America. 111: 5914-9. PMID 24706921 DOI: 10.1073/Pnas.1403157111  0.724
2014 Davis CC, Xi Z, Mathews S. Plastid phylogenomics and green plant phylogeny: almost full circle but not quite there. Bmc Biology. 12: 11. PMID 24533863 DOI: 10.1186/1741-7007-12-11  0.636
2014 Nikolov LA, Staedler YM, Manickam S, Schönenberger J, Endress PK, Kramer EM, Davis CC. Floral structure and development in Rafflesiaceae with emphasis on their exceptional gynoecia. American Journal of Botany. 101: 225-43. PMID 24509798 DOI: 10.3732/Ajb.1400009  0.758
2014 Zhong B, Xi Z, Goremykin VV, Fong R, McLenachan PA, Novis PM, Davis CC, Penny D. Streptophyte algae and the origin of land plants revisited using heterogeneous models with three new algal chloroplast genomes. Molecular Biology and Evolution. 31: 177-83. PMID 24136916 DOI: 10.1093/Molbev/Mst200  0.652
2014 Ellison AM, Davis CC, Calie PJ, Naczi RFC. Pitcher plants (Sarracenia) provide a 21st-century perspective on infraspecific ranks and interspecific hybrids: A modest proposal* for appropriate recognition and usage Systematic Botany. 39: 939-949. DOI: 10.1600/036364414X681473  0.455
2013 DeChaine EG, Forester BR, Schaefer H, Davis CC. Deep genetic divergence between disjunct Refugia in the Arctic-Alpine King's Crown, Rhodiola integrifolia (Crassulaceae). Plos One. 8: e79451. PMID 24282505 DOI: 10.1371/Journal.Pone.0079451  0.424
2013 Xi Z, Rest JS, Davis CC. Phylogenomics and coalescent analyses resolve extant seed plant relationships. Plos One. 8: e80870. PMID 24278335 DOI: 10.1371/Journal.Pone.0080870  0.706
2013 Nikolov LA, Endress PK, Sugumaran M, Sasirat S, Vessabutr S, Kramer EM, Davis CC. Developmental origins of the world's largest flowers, Rafflesiaceae. Proceedings of the National Academy of Sciences of the United States of America. 110: 18578-83. PMID 24167265 DOI: 10.1073/Pnas.1310356110  0.768
2013 Zhang W, Steinmann VW, Nikolov L, Kramer EM, Davis CC. Divergent genetic mechanisms underlie reversals to radial floral symmetry from diverse zygomorphic flowered ancestors. Frontiers in Plant Science. 4: 302. PMID 23970887 DOI: 10.3389/Fpls.2013.00302  0.775
2013 Wolkovich EM, Davies TJ, Schaefer H, Cleland EE, Cook BI, Travers SE, Willis CG, Davis CC. Temperature-dependent shifts in phenology contribute to the success of exotic species with climate change. American Journal of Botany. 100: 1407-21. PMID 23797366 DOI: 10.3732/Ajb.1200478  0.476
2013 Cappellari SC, Schaefer H, Davis CC. Evolution: pollen or pollinators - which came first? Current Biology : Cb. 23: R316-8. PMID 23618666 DOI: 10.1016/J.Cub.2013.02.049  0.461
2013 Endress PK, Davis CC, Matthews ML. Advances in the floral structural characterization of the major subclades of Malpighiales, one of the largest orders of flowering plants. Annals of Botany. 111: 969-85. PMID 23486341 DOI: 10.1093/Aob/Mct056  0.477
2013 Xi Z, Wang Y, Bradley RK, Sugumaran M, Marx CJ, Rest JS, Davis CC. Massive mitochondrial gene transfer in a parasitic flowering plant clade. Plos Genetics. 9: e1003265. PMID 23459037 DOI: 10.1371/Journal.Pgen.1003265  0.681
2013 Ellwood ER, Temple SA, Primack RB, Bradley NL, Davis CC. Record-breaking early flowering in the eastern United States. Plos One. 8: e53788. PMID 23342001 DOI: 10.1371/Journal.Pone.0053788  0.414
2013 Ruhfel BR, Stevens PF, Davis CC. Combined morphological and molecular phylogeny of the clusioid clade (Malpighiales) and the placement of the ancient rosid macrofossil paleoclusia International Journal of Plant Sciences. 174: 910-936. DOI: 10.1086/670668  0.776
2012 Xi Z, Ruhfel BR, Schaefer H, Amorim AM, Sugumaran M, Wurdack KJ, Endress PK, Matthews ML, Stevens PF, Mathews S, Davis CC. Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales. Proceedings of the National Academy of Sciences of the United States of America. 109: 17519-24. PMID 23045684 DOI: 10.1073/Pnas.1205818109  0.82
2012 Ellison AM, Butler ED, Hicks EJ, Naczi RF, Calie PJ, Bell CD, Davis CC. Phylogeny and biogeography of the carnivorous plant family Sarraceniaceae. Plos One. 7: e39291. PMID 22720090 DOI: 10.1371/Journal.Pone.0039291  0.641
2012 Xi Z, Bradley RK, Wurdack KJ, Wong K, Sugumaran M, Bomblies K, Rest JS, Davis CC. Horizontal transfer of expressed genes in a parasitic flowering plant. Bmc Genomics. 13: 227. PMID 22681756 DOI: 10.1186/1471-2164-13-227  0.618
2012 Zhang W, Kramer EM, Davis CC. Similar genetic mechanisms underlie the parallel evolution of floral phenotypes. Plos One. 7: e36033. PMID 22558314 DOI: 10.1371/Journal.Pone.0036033  0.421
2011 Davis CC, Schaefer H. Plant evolution: pulses of extinction and speciation in gymnosperm diversity. Current Biology : Cb. 21: R995-8. PMID 22192834 DOI: 10.1016/J.Cub.2011.11.020  0.407
2011 Soltis DE, Smith SA, Cellinese N, Wurdack KJ, Tank DC, Brockington SF, Refulio-Rodriguez NF, Walker JB, Moore MJ, Carlsward BS, Bell CD, Latvis M, Crawley S, Black C, Diouf D, ... ... Davis CC, et al. Angiosperm phylogeny: 17 genes, 640 taxa. American Journal of Botany. 98: 704-30. PMID 21613169 DOI: 10.3732/Ajb.1000404  0.815
2011 Ruhfel BR, Bittrich V, Bove CP, Gustafsson MH, Philbrick CT, Rutishauser R, Xi Z, Davis CC. Phylogeny of the clusioid clade (Malpighiales): evidence from the plastid and mitochondrial genomes. American Journal of Botany. 98: 306-25. PMID 21613119 DOI: 10.3732/Ajb.1000354  0.823
2011 Moore MJ, Hassan N, Gitzendanner MA, Bruenn RA, Croley M, Vandeventer A, Horn JW, Dhingra A, Brockington SF, Latvis M, Ramdial J, Alexandre R, Piedrahita A, Xi Z, Davis CC, et al. Phylogenetic analysis of the plastid inverted repeat for 244 species: Insights into deeper-level Angiosperm relationships from a long, slowly evolving sequence region International Journal of Plant Sciences. 172: 541-558. DOI: 10.1086/658923  0.642
2010 Davis CC, Anderson WR. A complete generic phylogeny of Malpighiaceae inferred from nucleotide sequence data and morphology. American Journal of Botany. 97: 2031-48. PMID 21616850 DOI: 10.3732/Ajb.1000146  0.499
2010 Davis CC, Willis CG, Primack RB, Miller-Rushing AJ. The importance of phylogeny to the study of phenological response to global climate change. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 3201-13. PMID 20819813 DOI: 10.1098/Rstb.2010.0130  0.466
2010 Zhang W, Kramer EM, Davis CC. Floral symmetry genes and the origin and maintenance of zygomorphy in a plant-pollinator mutualism. Proceedings of the National Academy of Sciences of the United States of America. 107: 6388-93. PMID 20363959 DOI: 10.1073/Pnas.0910155107  0.475
2010 Willis CG, Ruhfel BR, Primack RB, Miller-Rushing AJ, Losos JB, Davis CC. Favorable climate change response explains non-native species' success in Thoreau's woods. Plos One. 5: e8878. PMID 20126652 DOI: 10.1371/Journal.Pone.0008878  0.791
2009 Wurdack KJ, Davis CC. Malpighiales phylogenetics: Gaining ground on one of the most recalcitrant clades in the angiosperm tree of life. American Journal of Botany. 96: 1551-70. PMID 21628300 DOI: 10.3732/Ajb.0800207  0.499
2009 Wang H, Moore MJ, Soltis PS, Bell CD, Brockington SF, Alexandre R, Davis CC, Latvis M, Manchester SR, Soltis DE. Rosid radiation and the rapid rise of angiosperm-dominated forests. Proceedings of the National Academy of Sciences of the United States of America. 106: 3853-8. PMID 19223592 DOI: 10.1073/Pnas.0813376106  0.633
2009 Willis CG, Ruhfel B, Primack RB, Miller-Rushing AJ, Davis CC. Reply to McDonald et al.: Climate change, not deer herbivory, has shaped species decline in Concord, Massachusetts Proceedings of the National Academy of Sciences of the United States of America. 106: E29. DOI: 10.1073/Pnas.0900170106  0.75
2009 Davis CC, Fritsch PW, Li J, Donoghue MJ. Phylogeny and Biogeography of Cercis (Fabaceae): Evidence from Nuclear Ribosomal ITS and Chloroplast ndhF Sequence Data Systematic Botany. 27: 289-302. DOI: 10.1043/0363-6445-27.2.289  0.457
2008 Davis CC. Floral evolution: dramatic size change was recent and rapid in the world's largest flowers. Current Biology : Cb. 18: R1102-4. PMID 19081046 DOI: 10.1016/J.Cub.2008.10.011  0.354
2008 Willis CG, Ruhfel B, Primack RB, Miller-Rushing AJ, Davis CC. Phylogenetic patterns of species loss in Thoreau's woods are driven by climate change. Proceedings of the National Academy of Sciences of the United States of America. 105: 17029-33. PMID 18955707 DOI: 10.1073/Pnas.0806446105  0.784
2008 Davis CC, Endress PK, Baum DA. The evolution of floral gigantism. Current Opinion in Plant Biology. 11: 49-57. PMID 18207449 DOI: 10.1016/J.Pbi.2007.11.003  0.444
2008 Ruhfel B, Lindsay S, Davis CC. Phylogenetic placement of Rheopteris and the polyphyly of Monogramma (Pteridaceae s.l.): Evidence from rbcl sequence data Systematic Botany. 33: 37-43. DOI: 10.1600/036364408783887410  0.482
2007 Davis CC, Latvis M, Nickrent DL, Wurdack KJ, Baum DA. Floral gigantism in Rafflesiaceae. Science (New York, N.Y.). 315: 1812. PMID 17218493 DOI: 10.1126/Science.1135260  0.478
2007 Soltis DE, Clayton JW, Davis CC, Gitzendanner MA, Cheek M, Savolainen V, Amorim AM, Soltis PS. Monophyly and relationships of the enigmatic family Peridiscaceae Taxon. 56: 65-73. DOI: 10.2307/25065736  0.421
2006 Qiu YL, Li L, Wang B, Chen Z, Knoop V, Groth-Malonek M, Dombrovska O, Lee J, Kent L, Rest J, Estabrook GF, Hendry TA, Taylor DW, Testa CM, Ambros M, ... ... Davis CC, et al. The deepest divergences in land plants inferred from phylogenomic evidence. Proceedings of the National Academy of Sciences of the United States of America. 103: 15511-6. PMID 17030812 DOI: 10.1073/Pnas.0603335103  0.457
2005 Samuel R, Kathriarachchi H, Hoffmann P, Barfuss MH, Wurdack KJ, Davis CC, Chase MW. Molecular phylogenetics of Phyllanthaceae: evidence from plastid MATK and nuclear PHYC sequences. American Journal of Botany. 92: 132-41. PMID 21652393 DOI: 10.3732/Ajb.92.1.132  0.399
2005 Davis CC, Anderson WR, Wurdack KJ. Gene transfer from a parasitic flowering plant to a fern. Proceedings. Biological Sciences / the Royal Society. 272: 2237-42. PMID 16191635 DOI: 10.1098/Rspb.2005.3226  0.447
2005 Davis CC, Webb CO, Wurdack KJ, Jaramillo CA, Donoghue MJ. Explosive radiation of Malpighiales supports a mid-cretaceous origin of modern tropical rain forests. The American Naturalist. 165: E36-65. PMID 15729659 DOI: 10.1086/428296  0.586
2005 Qiu YL, Dombrovska O, Lee J, Li L, Whitlock BA, Bernasconi-Quadroni F, Rest JS, Davis CC, Borsch T, Hilu KW, Renner SS, Soltis DE, Soltis PS, Zanis MJ, Cannone JJ, et al. Phylogenetic analyses of basal angiosperms based on nine plastid, mitochondrial, and nuclear genes International Journal of Plant Sciences. 166: 815-842. DOI: 10.1086/431800  0.424
2004 Davis CC, Chase MW. Elatinaceae are sister to Malpighiaceae; Peridiscaceae belong to Saxifragales. American Journal of Botany. 91: 262-73. PMID 21653382 DOI: 10.3732/Ajb.91.2.262  0.387
2004 Davis CC, Wurdack KJ. Host-to-parasite gene transfer in flowering plants: Phylogenetic evidence from Malpighiales Science. 305: 676-678. PMID 15256617 DOI: 10.1126/Science.1100671  0.445
2004 Davis CC, Fritsch PW, Bell CD, Mathews S, Arboretum A. High‐Latitude Tertiary Migrations of an Exclusively Tropical Clade: Evidence from Malpighiaceae International Journal of Plant Sciences. 165. DOI: 10.1086/383337  0.38
2002 Davis CC. Madagasikaria (Malpighiaceae): a new genus from Madagascar with implications for floral evolution in Malpighiaceae. American Journal of Botany. 89: 699-706. PMID 21665670 DOI: 10.3732/Ajb.89.4.699  0.482
2002 Davis CC, Bell CD, Fritsch PW, Mathews S. Phylogeny of Acridocarpus-Brachylophon (Malpighiaceae): implications for tertiary tropical floras and Afroasian biogeography. Evolution; International Journal of Organic Evolution. 56: 2395-405. PMID 12583580 DOI: 10.1111/J.0014-3820.2002.Tb00165.X  0.645
2002 Davis CC, Bell CD, Mathews S, Donoghue MJ. Laurasian migration explains Gondwanan disjunctions: evidence from Malpighiaceae. Proceedings of the National Academy of Sciences of the United States of America. 99: 6833-7. PMID 11983870 DOI: 10.1073/Pnas.102175899  0.684
2001 Davis CC, Anderson WR, Donoghue MJ. Phylogeny of Malpighiaceae: evidence from chloroplast ndhF and trnl-F nucleotide sequences. American Journal of Botany. 88: 1830-46. PMID 21669617 DOI: 10.2307/3558360  0.653
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