Xin-Jian He - Related publications

Affiliations: 
NIBS (Beijing, China), Beijing, Beijing Shi, China 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Morgunova E, Taipale J. Structural insights into the interaction between transcription factors and the nucleosome. Current Opinion in Structural Biology. 71: 171-179. PMID 34364091 DOI: 10.1016/j.sbi.2021.06.016   
2021 Rayapuram N, Jarad M, Alhoraibi HM, Bigeard J, Abulfaraj AA, Völz R, Mariappan KG, Almeida-Trapp M, Schlöffel M, Lastrucci E, Bonhomme L, Gust AA, Mithöfer A, Arold ST, Pflieger D, et al. Chromatin phosphoproteomics unravels a function for AT-hook motif nuclear localized protein AHL13 in PAMP-triggered immunity. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33419940 DOI: 10.1073/pnas.2004670118   
2021 Banerjee S, Roy S. An insight into understanding the coupling between homologous recombination mediated DNA repair and chromatin romodeling mechanisms in plant genome: an update. Cell Cycle (Georgetown, Tex.). 1-25. PMID 34437813 DOI: 10.1080/15384101.2021.1966584   
2021 Suganuma T, Workman JL. Nucleotide Metabolism Behind Epigenetics. Frontiers in Endocrinology. 12: 731648. PMID 34526971 DOI: 10.3389/fendo.2021.731648   
2021 Huang R, Huang T, Irish VF. Do Epigenetic Timers Control Petal Development? Frontiers in Plant Science. 12: 709360. PMID 34295349 DOI: 10.3389/fpls.2021.709360   
2021 Jethmalani Y, Tran K, Negesse MY, Sun W, Ramos M, Jaiswal D, Jezek M, Amos S, Garcia EJ, Park D, Green EM. Set4 regulates stress response genes and coordinates histone deacetylases within yeast subtelomeres. Life Science Alliance. 4. PMID 34625508 DOI: 10.26508/lsa.202101126   
2021 Li S, He X, Gao Y, Zhou C, Chiang VL, Li W. Histone Acetylation Changes in Plant Response to Drought Stress. Genes. 12. PMID 34573391 DOI: 10.3390/genes12091409   
2021 Staneva DP, Carloni R, Auchynnikava T, Tong P, Arulanandam JA, Rappsilber J, Matthews KR, Allshire RC. A systematic analysis of chromatin factors identifies novel protein interaction networks associated with sites of transcription initiation and termination. Genome Research. PMID 34407985 DOI: 10.1101/gr.275368.121   
2021 Cheung KL, Kim C, Zhou MM. The Functions of BET Proteins in Gene Transcription of Biology and Diseases. Frontiers in Molecular Biosciences. 8: 728777. PMID 34540900 DOI: 10.3389/fmolb.2021.728777   
2021 Feng J, Gao Y, Wang K, Jiang M. A Novel Epigenetic Regulator ZRF1: Insight into Its Functions in Plants. Genes. 12. PMID 34440419 DOI: 10.3390/genes12081245   
2021 Rippe K. Liquid-Liquid Phase Separation in Chromatin. Cold Spring Harbor Perspectives in Biology. PMID 34127447 DOI: 10.1101/cshperspect.a040683   
2021 Wu PS, Grosser J, Cameron DP, Baranello L, Ström L. Deficiency of Polη in Saccharomyces cerevisiae reveals the impact of transcription on damage-induced cohesion. Plos Genetics. 17: e1009763. PMID 34499654 DOI: 10.1371/journal.pgen.1009763   
2021 Nirala NK, Li Q, Ghule PN, Chen HJ, Li R, Zhu LJ, Wang R, Rice NP, Mao J, Stein JL, Stein GS, van Wijnen AJ, Ip YT. Hinfp is a guardian of the somatic genome by repressing transposable elements. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34620709 DOI: 10.1073/pnas.2100839118   
2021 Shirra MK, Kocik RA, Ellison MA, Arndt KM. Opposing functions of the Hda1 complex and histone H2B mono-ubiquitylation in regulating cryptic transcription in Saccharomyces cerevisiae. G3 (Bethesda, Md.). PMID 34499735 DOI: 10.1093/g3journal/jkab298   
2021 Dai Y, Wei T, Shen Z, Bei Y, Lin H, Dai H. Classical HDACs in the regulation of neuroinflammation. Neurochemistry International. 105182. PMID 34509559 DOI: 10.1016/j.neuint.2021.105182   
2021 Zhang J, Lu X, MoghaddamKohi S, Shi L, Xu X, Zhu WG. Histone lysine modifying enzymes and their critical roles in DNA double-strand break repair. Dna Repair. 107: 103206. PMID 34411909 DOI: 10.1016/j.dnarep.2021.103206   
2021 Mohan C, Das C, Tyler J. Histone and Chromatin Dynamics Facilitating DNA repair. Dna Repair. 107: 103183. PMID 34419698 DOI: 10.1016/j.dnarep.2021.103183   
2021 Si S, Zhang M, Hu Y, Wu C, Yang Y, Luo S, Xiao X. is a histone acetyltransferase that affects bolting development in Chinese flowering cabbage. Journal of Genetics. 100. PMID 34470920   
2021 Du Q, Qu Z, Wang L, Jiang J, Fu X, Fang Y, Li X, Xie X. Histone deacetylase SbHDT701 in Sorghum bicolor reveals functions in response to stress factors by enhancing acetylation. Pesticide Biochemistry and Physiology. 178: 104908. PMID 34446212 DOI: 10.1016/j.pestbp.2021.104908   
2021 Guttzeit S, Backs J. Post-translational modifications talk and crosstalk to class IIa histone deacetylases. Journal of Molecular and Cellular Cardiology. PMID 34416247 DOI: 10.1016/j.yjmcc.2021.08.007   
2021 Sharma R, Choi KJ, Quan MD, Sharma S, Sankaran B, Park H, LaGrone A, Kim JJ, MacKenzie KR, Ferreon ACM, Kim C, Ferreon JC. Liquid condensation of reprogramming factor KLF4 with DNA provides a mechanism for chromatin organization. Nature Communications. 12: 5579. PMID 34552088 DOI: 10.1038/s41467-021-25761-7   
2021 Shi J, Xu J, Chen YE, Li JS, Cui Y, Shen L, Li JJ, Li W. The concurrence of DNA methylation and demethylation is associated with transcription regulation. Nature Communications. 12: 5285. PMID 34489442 DOI: 10.1038/s41467-021-25521-7   
2021 Zhang X, Wang T. Plant 3-D Chromatin Organization: Important Insights from Chromosome Conformation Capture Analyses of the Last 10 Years. Plant & Cell Physiology. PMID 34486654 DOI: 10.1093/pcp/pcab134   
2021 Deng Q, Lu H, Wu M, Ran M, Wang Z, Wei D, Tang Q. [Molecular mechanisms of RPD3 family members in regulating plant development and environmental responses]. Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology. 37: 2645-2657. PMID 34472285 DOI: 10.13345/j.cjb.200534   
2021 Peng Y, Li S, Onufriev A, Landsman D, Panchenko AR. Binding of regulatory proteins to nucleosomes is modulated by dynamic histone tails. Nature Communications. 12: 5280. PMID 34489435 DOI: 10.1038/s41467-021-25568-6   
2021 Du W, Pan D, Xiang P, Xiong C, Zhang M, Zhang Q, Tian Y, Zhang Z, Chen B, Luo K, Gong Q, Tian X. Terpyridine Zn(II) Complexes with Azide Units for Visualization of Histone Deacetylation in Living Cells under STED Nanoscopy. Acs Sensors. PMID 34498846 DOI: 10.1021/acssensors.1c01287   
2021 Zheng X, Sawalha A. The role of oxidative stress in epigenetic changes underlying autoimmunity. Antioxidants & Redox Signaling. PMID 34544258 DOI: 10.1089/ars.2021.0066   
2021 Fu I, Geacintov NE, Broyde S. Molecular dynamics simulations reveal how H3K56 acetylation impacts nucleosome structure to promote DNA exposure for lesion sensing. Dna Repair. 107: 103201. PMID 34399316 DOI: 10.1016/j.dnarep.2021.103201   
2021 Yoneda M, Yasui K, Nakagawa T, Hattori N, Ito T. Nucleosome assembly protein 1 (NAP-1) is a regulator of histone H1 acetylation. Journal of Biochemistry. PMID 34551067 DOI: 10.1093/jb/mvab098   
2021 Mashtalir N, Dao HT, Sankar A, Liu H, Corin AJ, Bagert JD, Ge EJ, D'Avino AR, Filipovski M, Michel BC, Dann GP, Muir TW, Kadoch C. Chromatin landscape signals differentially dictate the activities of mSWI/SNF family complexes. Science (New York, N.Y.). 373: 306-315. PMID 34437148 DOI: 10.1126/science.abf8705   
2021 Liu S, Trejo-Arellano MS, Qiu Y, Eklund DM, Köhler C, Hennig L. H2A ubiquitination is essential for Polycomb Repressive Complex 1-mediated gene regulation in Marchantia polymorpha. Genome Biology. 22: 253. PMID 34465381 DOI: 10.1186/s13059-021-02476-y   
2021 Kleinschmidt RA, Lyon LM, Smith SL, Rittenberry J, Lawless KM, Acosta AA, Donze D. Genetic screen for suppressors of increased silencing in rpd3 mutants in Saccharomyces cerevisiae identifies a potential role for H3K4 methylation. G3 (Bethesda, Md.). PMID 34534290 DOI: 10.1093/g3journal/jkab309   
2021 Sinha S, Molla S, Kundu CN. PARP1-modulated chromatin remodeling is a new target for cancer treatment. Medical Oncology (Northwood, London, England). 38: 118. PMID 34432161 DOI: 10.1007/s12032-021-01570-2   
2021 Gupta R, Ambasta RK, Kumar P. Histone deacetylase in neuropathology. Advances in Clinical Chemistry. 104: 151-231. PMID 34462055 DOI: 10.1016/bs.acc.2020.09.004   
2021 Wang Q, Bao X, Chen S, Zhong H, Liu Y, Zhang L, Xia Y, Kragler F, Luo M, Li XD, Lam HM, Zhang S. AtHDA6 functions as an H3K18ac eraser to maintain pericentromeric CHG methylation in Arabidopsis thaliana. Nucleic Acids Research. PMID 34403482 DOI: 10.1093/nar/gkab706   
2021 Cao F, Zhang Y, Cai Y, Animesh S, Zhang Y, Akincilar SC, Loh YP, Li X, Chng WJ, Tergaonkar V, Kwoh CK, Fullwood MJ. Chromatin interaction neural network (ChINN): a machine learning-based method for predicting chromatin interactions from DNA sequences. Genome Biology. 22: 226. PMID 34399797 DOI: 10.1186/s13059-021-02453-5   
2021 Lv Z, Dai R, Xu H, Liu Y, Bai B, Meng Y, Li H, Cao X, Bai Y, Song X, Zhang J. The rice histone methylation regulates hub species of the root microbiota. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 34391677 DOI: 10.1016/j.jgg.2021.06.005   
2021 Zhang S, Zhan L, Li X, Yang Z, Luo Y, Zhao H. Preclinical and clinical progress for HDAC as a putative target for epigenetic remodeling and functionality of immune cells. International Journal of Biological Sciences. 17: 3381-3400. PMID 34512154 DOI: 10.7150/ijbs.62001   
2021 Ortega P, Gómez-González B, Aguilera A. Heterogeneity of DNA damage incidence and repair in different chromatin contexts. Dna Repair. 107: 103210. PMID 34416542 DOI: 10.1016/j.dnarep.2021.103210   
2021 Li S, Lyu S, Liu Y, Luo M, Shi S, Deng S. P6 Dysfunctions Histone Deacetylase HD2C to Promote Virus Infection. Cells. 10. PMID 34571927 DOI: 10.3390/cells10092278   
2021 Chen Z, Zhang Y, Guan Q, Zhang H, Luo J, Li J, Wei W, Xu X, Liao L, Wong J, Li J. Linking nuclear matrix-localized PIAS1 to chromatin SUMOylation via direct binding of histones H3 and H2A.Z. The Journal of Biological Chemistry. 101200. PMID 34537242 DOI: 10.1016/j.jbc.2021.101200   
2021 Dziegielewski W, Ziolkowski PA. License to Regulate: Noncoding RNA Special Agents in Plant Meiosis and Reproduction. Frontiers in Plant Science. 12: 662185. PMID 34489987 DOI: 10.3389/fpls.2021.662185   
2021 Lewis TS, Sokolova V, Jung H, Ng H, Tan D. Structural basis of chromatin regulation by histone variant H2A.Z. Nucleic Acids Research. PMID 34643712 DOI: 10.1093/nar/gkab907   
2021 Jing Y, Tian G, Qin X, Liu Z, Li XD. Lysine succinylation on non-histone chromosomal protein HMG-17 (HMGN2) regulates nucleosomal DNA accessibility by disrupting the HMGN2-nucleosome association. Rsc Chemical Biology. 2: 1257-1262. PMID 34458839 DOI: 10.1039/d1cb00070e   
2021 Shoaib M, Chen Q, Shi X, Nair N, Prasanna C, Yang R, Walter D, Frederiksen KS, Einarsson H, Svensson JP, Liu CF, Ekwall K, Lerdrup M, Nordenskiöld L, Sørensen CS. Histone H4 lysine 20 mono-methylation directly facilitates chromatin openness and promotes transcription of housekeeping genes. Nature Communications. 12: 4800. PMID 34417450 DOI: 10.1038/s41467-021-25051-2   
2021 Uruci S, Lo CSY, Wheeler D, Taneja N. R-Loops and Its Chro-Mates: The Strange Case of Dr. Jekyll and Mr. Hyde. International Journal of Molecular Sciences. 22. PMID 34445553 DOI: 10.3390/ijms22168850   
2021 Tsou PS, Varga J, O'Reilly S. Advances in epigenetics in systemic sclerosis: molecular mechanisms and therapeutic potential. Nature Reviews. Rheumatology. PMID 34480165 DOI: 10.1038/s41584-021-00683-2   
2021 Leo L, Colonna Romano N. Emerging Single-Cell Technological Approaches to Investigate Chromatin Dynamics and Centromere Regulation in Human Health and Disease. International Journal of Molecular Sciences. 22. PMID 34445507 DOI: 10.3390/ijms22168809   
2021 Park M, Williams DS, Turpin ZM, Wiggins ZJ, Tsolova VM, Onokpise OU, Bass HW. Differential nuclease sensitivity profiling uncovers a drought responsive change in maize leaf chromatin structure for two large retrotransposon derivatives, and . Plant Direct. 5: e337. PMID 34430792 DOI: 10.1002/pld3.337   
2021 Amemiya HM, Schroeder J, Freddolino PL. Nucleoid-associated proteins shape chromatin structure and transcriptional regulation across the bacterial kingdom. Transcription. 1-37. PMID 34499567 DOI: 10.1080/21541264.2021.1973865