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Li Zhao - Publications

Affiliations: 
University of California, Davis, Davis, CA 
Area:
population genetics and molecular evolution
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Zhao L, Svetec N, Begun DJ. De Novo Genes. Annual Review of Genetics. PMID 39088850 DOI: 10.1146/annurev-genet-111523-102413  0.782
2024 Lee U, Li C, Langer CB, Svetec N, Zhao L. Comparative Single Cell Analysis of Transcriptional Bursting Reveals the Role of Genome Organization on Transcript Origination. Biorxiv : the Preprint Server For Biology. PMID 38746255 DOI: 10.1101/2024.04.29.591771  0.741
2024 Peng J, Svetec N, Molina H, Zhao L. The Origin and Evolution of Sex Peptide and Sex Peptide Receptor Interactions. Molecular Biology and Evolution. PMID 38518286 DOI: 10.1093/molbev/msae065  0.686
2024 Peng J, Zhao L. The origin and structural evolution of de novo genes in Drosophila. Nature Communications. 15: 810. PMID 38280868 DOI: 10.1038/s41467-024-45028-1  0.356
2023 Peng J, Svetec N, Molina H, Zhao L. The Origin and Evolution of Sex Peptide and Sex Peptide Receptor Interactions. Biorxiv : the Preprint Server For Biology. PMID 38013995 DOI: 10.1101/2023.11.19.567744  0.686
2023 Khodursky S, Zheng EB, Svetec N, Durkin SM, Benjamin S, Gadau A, Wu X, Zhao L. The evolution and mutational robustness of chromatin accessibility in Drosophila. Genome Biology. 24: 232. PMID 37845780 DOI: 10.1186/s13059-023-03079-5  0.725
2023 Khodursky S, Zheng EB, Svetec N, Durkin SM, Benjamin S, Gadau A, Wu X, Zhao L. The evolution and mutational robustness of chromatin accessibility in . Biorxiv : the Preprint Server For Biology. PMID 37425760 DOI: 10.1101/2023.06.26.546587  0.724
2023 Peng J, Zhao L. The origin and structural evolution of genes in . Biorxiv : the Preprint Server For Biology. PMID 37425675 DOI: 10.1101/2023.03.13.532420  0.345
2023 Witt E, Langer CB, Svetec N, Zhao L. Transcriptional and mutational signatures of the Drosophila ageing germline. Nature Ecology & Evolution. PMID 36635344 DOI: 10.1038/s41559-022-01958-x  0.732
2021 Peng J, Svetec N, Zhao L. Intermolecular interactions drive protein adaptive and co-adaptive evolution at both species and population levels. Molecular Biology and Evolution. PMID 34878126 DOI: 10.1093/molbev/msab350  0.719
2021 Cridland JM, Majane AC, Zhao L, Begun DJ. Population biology of accessory gland-expressed de novo genes in Drosophila melanogaster. Genetics. PMID 34791207 DOI: 10.1093/genetics/iyab207  0.624
2021 Durkin SM, Chakraborty M, Abrieux A, Lewald KM, Gadau A, Svetec N, Peng J, Kopyto M, Langer CB, Chiu JC, Emerson JJ, Zhao L. Behavioral and genomic sensory adaptations underlying the pest activity of Drosophila suzukii. Molecular Biology and Evolution. PMID 33586767 DOI: 10.1093/molbev/msab048  0.714
2021 Witt E, Svetec N, Benjamin S, Zhao L. Transcription factors drive opposite relationships between gene age and tissue specificity in male and female Drosophila gonads. Molecular Biology and Evolution. PMID 33481021 DOI: 10.1093/molbev/msab011  0.737
2020 Khodursky S, Svetec N, Durkin SM, Zhao L. The evolution of sex-biased gene expression in the brain. Genome Research. PMID 32554780 DOI: 10.1101/Gr.259069.119  0.758
2019 Levran O, Even-Tov E, Zhao L. A hominid-specific shift in cerebellar expression, upstream retrotransposons, and a potential cis-regulatory mechanism: bioinformatics analyses of the mu-opioid receptor gene. Heredity. PMID 31712748 DOI: 10.1038/S41437-019-0282-3  0.335
2019 Li S, Zheng EB, Zhao L, Liu S. Nonreciprocal and Conditional Cooperativity Directs the Pioneer Activity of Pluripotency Transcription Factors. Cell Reports. 28: 2689-2703.e4. PMID 31484078 DOI: 10.1016/J.Celrep.2019.07.103  0.346
2019 Witt E, Benjamin S, Svetec N, Zhao L. Testis single-cell RNA-seq reveals the dynamics of de novo gene transcription and germline mutational bias in . Elife. 8. PMID 31418408 DOI: 10.7554/Elife.47138  0.763
2019 Witt E, Benjamin S, Svetec N, Zhao L. Author response: Testis single-cell RNA-seq reveals the dynamics of de novo gene transcription and germline mutational bias in Drosophila Elife. DOI: 10.7554/Elife.47138.028  0.729
2018 Matthews BJ, Dudchenko O, Kingan SB, Koren S, Antoshechkin I, Crawford JE, Glassford WJ, Herre M, Redmond SN, Rose NH, Weedall GD, Wu Y, Batra SS, Brito-Sierra CA, Buckingham SD, ... ... Zhao L, et al. Improved reference genome of Aedes aegypti informs arbovirus vector control. Nature. PMID 30429615 DOI: 10.1038/S41586-018-0692-Z  0.348
2018 Tian Y, Guo S, Chen C, Zhao L, Li Z, Yan Y. Gene sequence screening for manganese poisoning-susceptible genes and analysis of gene interaction effects. Environmental Toxicology and Pharmacology. 64: 60-69. PMID 30300793 DOI: 10.1016/j.etap.2018.09.013  0.315
2017 Zhao L, Begun DJ. Genomics of parallel adaptation at two timescales in Drosophila. Plos Genetics. 13: e1007016. PMID 28968391 DOI: 10.1371/Journal.Pgen.1007016  0.634
2016 Svetec N, Cridland JM, Zhao L, Begun DJ. The Adaptive Significance of Natural Genetic Variation in the DNA Damage Response of Drosophila melanogaster. Plos Genetics. 12: e1005869. PMID 26950216 DOI: 10.1371/Journal.Pgen.1005869  0.755
2015 Li X, Fan D, Zhang W, Liu G, Zhang L, Zhao L, Fang X, Chen L, Dong Y, Chen Y, Ding Y, Zhao R, Feng M, Zhu Y, Feng Y, et al. Outbred genome sequencing and CRISPR/Cas9 gene editing in butterflies. Nature Communications. 6: 8212. PMID 26354079 DOI: 10.1038/Ncomms9212  0.614
2015 Zhao L, Wit J, Svetec N, Begun DJ. Parallel Gene Expression Differences between Low and High Latitude Populations of Drosophila melanogaster and D. simulans. Plos Genetics. 11: e1005184. PMID 25950438 DOI: 10.1371/Journal.Pgen.1005184  0.782
2015 Svetec N, Zhao L, Saelao P, Chiu JC, Begun DJ. Evidence that natural selection maintains genetic variation for sleep in Drosophila melanogaster. Bmc Evolutionary Biology. 15: 41. PMID 25887180 DOI: 10.1186/S12862-015-0316-2  0.771
2014 Zhao L, Saelao P, Jones CD, Begun DJ. Origin and spread of de novo genes in Drosophila melanogaster populations. Science (New York, N.Y.). 343: 769-72. PMID 24457212 DOI: 10.1126/Science.1248286  0.731
2013 Chiu JC, Jiang X, Zhao L, Hamm CA, Cridland JM, Saelao P, Hamby KA, Lee EK, Kwok RS, Zhang G, Zalom FG, Walton VM, Begun DJ. Genome of Drosophila suzukii, the spotted wing drosophila. G3 (Bethesda, Md.). 3: 2257-71. PMID 24142924 DOI: 10.1534/G3.113.008185  0.674
2012 Zhou Q, Zhu HM, Huang QF, Zhao L, Zhang GJ, Roy SW, Vicoso B, Xuan ZL, Ruan J, Zhang Y, Zhao RP, Ye C, Zhang XQ, Wang J, Wang W, et al. Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans. Bmc Genomics. 13: 109. PMID 22439699 DOI: 10.1186/1471-2164-13-109  0.567
2011 Xing W, Han B, Wu Q, Zhao L, Bao X, Bou S. Molecular cloning and characterization of Izumo1 gene from sheep and cashmere goat reveal alternative splicing Molecular Biology Reports. 38: 1995-2006. PMID 20963501 DOI: 10.1007/S11033-010-0322-9  0.377
2010 Ding Y, Zhao L, Yang S, Jiang Y, Chen Y, Zhao R, Zhang Y, Zhang G, Dong Y, Yu H, Zhou Q, Wang W. A young Drosophila duplicate gene plays essential roles in spermatogenesis by regulating several Y-linked male fertility genes. Plos Genetics. 6: e1001255. PMID 21203494 DOI: 10.1371/Journal.Pgen.1001255  0.662
2010 Xiang H, Zhu J, Chen Q, Dai F, Li X, Li M, Zhang H, Zhang G, Li D, Dong Y, Zhao L, Lin Y, Cheng D, Yu J, Sun J, et al. Single base-resolution methylome of the silkworm reveals a sparse epigenomic map. Nature Biotechnology. 28: 516-20. PMID 20436463 DOI: 10.1038/Nbt.1626  0.611
2009 Li X, Zhao L, Jiang H, Wang W. Short homologous sequences are strongly associated with the generation of chimeric RNAs in eukaryotes. Journal of Molecular Evolution. 68: 56-65. PMID 19089307 DOI: 10.1007/S00239-008-9187-0  0.337
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