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Ruth Isserlin - Publications

Affiliations: 
Biochemistry University of Toronto, Toronto, ON, Canada 
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27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Gustavsen JA, Pai S, Isserlin R, Demchak B, Pico AR. RCy3: Network biology using Cytoscape from within R. F1000research. 8: 1774. PMID 31819800 DOI: 10.12688/F1000Research.20887.3  0.304
2019 Pai S, Hui S, Isserlin R, Shah MA, Kaka H, Bader GD. netDx: interpretable patient classification using integrated patient similarity networks. Molecular Systems Biology. 15: e8497. PMID 30872331 DOI: 10.15252/Msb.20188497  0.32
2019 Reimand J, Isserlin R, Voisin V, Kucera M, Tannus-Lopes C, Rostamianfar A, Wadi L, Meyer M, Wong J, Xu C, Merico D, Bader GD. Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap. Nature Protocols. PMID 30664679 DOI: 10.1038/S41596-018-0103-9  0.352
2016 Kucera M, Isserlin R, Arkhangorodsky A, Bader GD. AutoAnnotate: A Cytoscape app for summarizing networks with semantic annotations. F1000research. 5: 1717. PMID 27830058 DOI: 10.12688/F1000Research.9090.1  0.336
2016 Kuzmanov U, Guo H, Buchsbaum D, Cosme J, Abbasi C, Isserlin R, Sharma P, Gramolini AO, Emili A. Global phosphoproteomic profiling reveals perturbed signaling in a mouse model of dilated cardiomyopathy. Proceedings of the National Academy of Sciences of the United States of America. PMID 27742792 DOI: 10.1073/Pnas.1606444113  0.32
2015 Kofia V, Isserlin R, Buchan AM, Bader GD. Social Network: a Cytoscape app for visualizing co-authorship networks. F1000research. 4: 481. PMID 26949516 DOI: 10.12688/F1000Research.6804.3  0.321
2015 Chamberlain MD, Wells LA, Lisovsky A, Guo H, Isserlin R, Talior-Volodarsky I, Mahou R, Emili A, Sefton MV. Unbiased phosphoproteomic method identifies the initial effects of a methacrylic acid copolymer on macrophages. Proceedings of the National Academy of Sciences of the United States of America. 112: 10673-8. PMID 26261332 DOI: 10.1073/Pnas.1508826112  0.304
2015 Guo H, Garcia-Vedrenne AE, Isserlin R, Lugowski A, Morada A, Sun A, Miao Y, Kuzmanov U, Wan C, Ma H, Foltz K, Emili A. Phosphoproteomic Network Analysis in the Sea Urchin Strongylocentrotus purpuratus Reveals New Candidates in Egg Activation. Proteomics. PMID 26227301 DOI: 10.1002/Pmic.201500159  0.34
2015 Kofia V, Isserlin R, Buchan AM, Bader GD. Social Network: a Cytoscape app for visualizing co-publication networks F1000research. 4: 481. DOI: 10.12688/F1000Research.6804.1  0.321
2015 Kamdar SN, Ho LT, Isserlin R, Kron KJ, Kwast Tvd, Zlotta AR, Fleshner NE, Bader G, Bapat B. Abstract B1-32: Genome-wide integrative analysis correlating locus-specific DNA methylation and hydroxymethylation to gene expression in normal prostate cells Cancer Research. 75. DOI: 10.1158/1538-7445.Compsysbio-B1-32  0.348
2014 Guo H, Isserlin R, Lugowski A, Kuzmanov U, Emili A. Large-scale label-free phosphoproteomics: from technology to data interpretation. Bioanalysis. 6: 2403-20. PMID 25384593 DOI: 10.4155/Bio.14.188  0.341
2014 Isserlin R, Merico D, Voisin V, Bader GD. Enrichment Map - a Cytoscape app to visualize and explore OMICs pathway enrichment results. F1000research. 3: 141. PMID 25075306 DOI: 10.12688/F1000Research.4536.1  0.377
2014 Kim MS, Pinto SM, Getnet D, Nirujogi RS, Manda SS, Chaerkady R, Madugundu AK, Kelkar DS, Isserlin R, Jain S, Thomas JK, Muthusamy B, Leal-Rojas P, Kumar P, Sahasrabuddhe NA, et al. A draft map of the human proteome. Nature. 509: 575-81. PMID 24870542 DOI: 10.1038/Nature13302  0.332
2014 Dagley LF, Croft NP, Isserlin R, Olsen JB, Fong V, Emili A, Purcell AW. Discovery of novel disease-specific and membrane-associated candidate markers in a mouse model of multiple sclerosis. Molecular & Cellular Proteomics : McP. 13: 679-700. PMID 24361864 DOI: 10.1074/Mcp.M113.033340  0.321
2013 Isserlin R, Merico D, Emili A. Global proteomic profiling and enrichment maps of dilated cardiomyopathy. Methods in Molecular Biology (Clifton, N.J.). 1005: 53-66. PMID 23606248 DOI: 10.1007/978-1-62703-386-2_5  0.371
2013 Guo H, Isserlin R, Chen X, Wang W, Phanse S, Zandstra PW, Paddison PJ, Emili A. Integrative network analysis of signaling in human CD34(+) hematopoietic progenitor cells by global phosphoproteomic profiling using TiO2 enrichment combined with 2D LC-MS/MS and pathway mapping. Proteomics. 13: 1325-33. PMID 23401153 DOI: 10.1002/Pmic.201200369  0.318
2012 Witt H, Mack SC, Bender S, Ryzhova M, Martin S, Isserlin R, Jones DTW, Northcott PA, Till M, Remke M, Benner A, Hielscher T, Gupta N, Garcia L, Weiss WA, et al. Abstract 1432: The heterogeneous genomic landscape of posterior fossa ependymoma Cancer Research. 72: 1432-1432. DOI: 10.1158/1538-7445.Am2012-1432  0.324
2011 Merico D, Isserlin R, Bader GD. Visualizing gene-set enrichment results using the Cytoscape plug-in enrichment map. Methods in Molecular Biology (Clifton, N.J.). 781: 257-77. PMID 21877285 DOI: 10.1007/978-1-61779-276-2_12  0.337
2011 Oesper L, Merico D, Isserlin R, Bader GD. WordCloud: a Cytoscape plugin to create a visual semantic summary of networks. Source Code For Biology and Medicine. 6: 7. PMID 21473782 DOI: 10.1186/1751-0473-6-7  0.314
2011 Isserlin R, El-Badrawi RA, Bader GD. The Biomolecular Interaction Network Database in PSI-MI 2.5. Database : the Journal of Biological Databases and Curation. 2011: baq037. PMID 21233089 DOI: 10.1093/Database/Baq037  0.32
2010 Merico D, Isserlin R, Stueker O, Emili A, Bader GD. Enrichment map: a network-based method for gene-set enrichment visualization and interpretation. Plos One. 5: e13984. PMID 21085593 DOI: 10.1371/Journal.Pone.0013984  0.359
2010 Isserlin R, Merico D, Alikhani-Koupaei R, Gramolini A, Bader GD, Emili A. Pathway analysis of dilated cardiomyopathy using global proteomic profiling and enrichment maps. Proteomics. 10: 1316-27. PMID 20127684 DOI: 10.1002/Pmic.200900412  0.403
2009 Bousette N, Kislinger T, Fong V, Isserlin R, Hewel JA, Emil A, Gramolini AO. Large-scale characterization and analysis of the murine cardiac proteome. Journal of Proteome Research. 8: 1887-901. PMID 19714876 DOI: 10.1021/Pr800845A  0.355
2008 Gramolini AO, Kislinger T, Alikhani-Koopaei R, Fong V, Thompson NJ, Isserlin R, Sharma P, Oudit GY, Trivieri MG, Fagan A, Kannan A, Higgins DG, Huedig H, Hess G, Arab S, et al. Comparative proteomics profiling of a phospholamban mutant mouse model of dilated cardiomyopathy reveals progressive intracellular stress responses. Molecular & Cellular Proteomics : McP. 7: 519-33. PMID 18056057 DOI: 10.1074/Mcp.M700245-Mcp200  0.341
2007 Isserlin R, Emili A. Nine steps to proteomic wisdom: A practical guide to using protein-protein interaction networks and molecular pathways as a framework for interpreting disease proteomic profiles. Proteomics. Clinical Applications. 1: 1156-68. PMID 21136765 DOI: 10.1002/Prca.200700146  0.383
2007 Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, et al. Integration of biological networks and gene expression data using Cytoscape. Nature Protocols. 2: 2366-82. PMID 17947979 DOI: 10.1038/Nprot.2007.324  0.379
2005 Alfarano C, Andrade CE, Anthony K, Bahroos N, Bajec M, Bantoft K, Betel D, Bobechko B, Boutilier K, Burgess E, Buzadzija K, Cavero R, D'Abreo C, Donaldson I, Dorairajoo D, ... ... Isserlin R, et al. The Biomolecular Interaction Network Database and related tools 2005 update. Nucleic Acids Research. 33: D418-24. PMID 15608229 DOI: 10.1093/Nar/Gki051  0.32
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