| Year |
Citation |
Score |
| 2023 |
Pathira Kankanamge LS, Mora A, Ondrechen MJ, Beuning PJ. Biochemical Activity of 17 Cancer-Associated Variants of DNA Polymerase Kappa Predicted by Electrostatic Properties. Chemical Research in Toxicology. PMID 37883788 DOI: 10.1021/acs.chemrestox.3c00233 |
0.685 |
|
| 2023 |
Pathira Kankanamge LS, Ruffner LA, Touch MM, Pina M, Beuning PJ, Ondrechen MJ. Functional annotation of haloacid dehalogenase superfamily structural genomics proteins. The Biochemical Journal. 480: 1553-1569. PMID 37747786 DOI: 10.1042/BCJ20230057 |
0.74 |
|
| 2023 |
Morse M, Roby FN, Kinare M, McIsaac J, Williams MC, Beuning PJ. DNA damage alters binding conformations of E. coli single-stranded DNA binding protein. Biophysical Journal. PMID 37632138 DOI: 10.1016/j.bpj.2023.08.018 |
0.347 |
|
| 2022 |
Ngu L, Ray D, Watson SS, Beuning PJ, Ondrechen MJ, O'Doherty GA. Stereoselective Synthesis of β-Glycinamide Ribonucleotide. Molecules (Basel, Switzerland). 27. PMID 35458726 DOI: 10.3390/molecules27082528 |
0.524 |
|
| 2022 |
Mills CL, Yin P, Leifer B, Ferrins L, O'Doherty GA, Beuning PJ, Ondrechen MJ. Functional Characterization of Structural Genomics Proteins in the Crotonase Superfamily. Acs Chemical Biology. PMID 35060718 DOI: 10.1021/acschembio.1c00842 |
0.643 |
|
| 2021 |
Cohen SE, Hashmi SM, Jones AD, Lykourinou V, Ondrechen MJ, Sridhar S, van de Ven AL, Waters LS, Beuning PJ. Adapting Undergraduate Research to Remote Work to Increase Engagement. Biophysicist (Rockville, Md.). 2: 28-32. PMID 36909739 DOI: 10.35459/tbp.2021.000199 |
0.513 |
|
| 2021 |
Wang P, Roider E, Coulter ME, Walsh CA, Kramer CS, Beuning PJ, Giese RW. DNA Adductomics by Mass Tag Prelabeling. Rapid Communications in Mass Spectrometry : Rcm. e9095. PMID 33821547 DOI: 10.1002/rcm.9095 |
0.315 |
|
| 2021 |
Naufer MN, Morse M, Möller GB, McIsaac J, Rouzina I, Beuning PJ, Williams MC. Multiprotein E. coli SSB-ssDNA complex shows both stable binding and rapid dissociation due to interprotein interactions. Nucleic Acids Research. PMID 33434279 DOI: 10.1093/nar/gkaa1267 |
0.338 |
|
| 2020 |
Wang P, Shah GL, Landau HJ, Coulter ME, Walsh CA, Roider E, Kramer CS, Beuning PJ, Giese RW. Jettison-MS of Nucleic Acid Species. Journal of the American Society For Mass Spectrometry. PMID 32551641 DOI: 10.1021/Jasms.0C00084 |
0.422 |
|
| 2020 |
Ngu L, Winters JN, Nguyen K, Ramos KE, DeLateur NA, Makowski L, Whitford PC, Ondrechen MJ, Beuning PJ. Probing remote residues important for catalysis in Escherichia coli ornithine transcarbamoylase. Plos One. 15: e0228487. PMID 32027716 DOI: 10.1371/Journal.Pone.0228487 |
0.661 |
|
| 2020 |
Ruffner LA, Pina M, Beuning PJ, Ondrechen MJ. Making Functional Predictions Using Local Spatial Arrangements in the Haloacid Dehalogenase Superfamily The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.07027 |
0.707 |
|
| 2020 |
Ondrechen MJ, Coulther TA, Ngu L, Watson S, Beuning PJ. Electrostatic and Chemical Properties in Natural and Designed Enzymes The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.04482 |
0.582 |
|
| 2020 |
Naufer MN, Morse M, Moller GB, McIsaac J, Rouzina I, Beuning PJ, Williams MC. E. coli Single Stranded Binding Protein (SSB) Self-Regulates Wrapping of SSDNA through Competitive Binding Biophysical Journal. 118: 70a. DOI: 10.1016/J.Bpj.2019.11.559 |
0.313 |
|
| 2020 |
Ngu L, Winters JN, Makowski L, Beuning PJ, Ondrechen MJ. Distal Residues and Enzyme Activity: Implications for Personalized Medicine Biophysical Journal. 118: 535a-536a. DOI: 10.1016/J.Bpj.2019.11.2937 |
0.614 |
|
| 2019 |
Stern HR, Sefcikova J, Chaparro VE, Beuning PJ. Mammalian DNA Polymerase Kappa Activity and Specificity. Molecules (Basel, Switzerland). 24. PMID 31374881 DOI: 10.3390/Molecules24152805 |
0.472 |
|
| 2019 |
Koleva BN, Gokcan H, Rizzo AA, Lim S, Jeanne Dit Fouque K, Choy A, Liriano ML, Fernandez-Lima F, Korzhnev DM, Cisneros GA, Beuning PJ. Dynamics of the E. coli β-Clamp Dimer Interface and Its Influence on DNA Loading. Biophysical Journal. PMID 31349986 DOI: 10.1016/J.Bpj.2019.06.035 |
0.393 |
|
| 2019 |
Coulther TA, Stern HR, Beuning PJ. Engineering Polymerases for New Functions. Trends in Biotechnology. PMID 31003719 DOI: 10.1016/J.Tibtech.2019.03.011 |
0.402 |
|
| 2019 |
Moulton K, Sadiki A, Koleva B, Ombelets L, Tran T, Liu S, Wang B, Chen H, Micheloni E, Beuning P, O'Doherty G, Zhou ZS. Site-specific reversible protein and peptide modification: transglutaminase-catalyzed glutamine conjugation and bioorthogonal light-mediated removal. Bioconjugate Chemistry. PMID 30945848 DOI: 10.1021/Acs.Bioconjchem.9B00145 |
0.347 |
|
| 2019 |
Muenter MM, Aiken A, Akanji JO, Baig S, Bellou S, Carlson A, Conway C, Cowell CM, DeLateur NA, Hester A, Joshi C, Kramer C, Leifer BS, Nash E, Qi MH, ... ... Beuning PJ, et al. The response of Escherichia coli to the alkylating agents chloroacetaldehyde and styrene oxide. Mutation Research. 840: 1-10. PMID 30857727 DOI: 10.1016/J.Mrgentox.2019.02.001 |
0.396 |
|
| 2018 |
Antczak NM, Walker AR, Stern HR, Leddin EM, Palad C, Coulther TA, Swett RJ, Cisneros GA, Beuning PJ. Characterization of nine cancer-associated variants in human DNA polymerase κ. Chemical Research in Toxicology. PMID 30004685 DOI: 10.1021/Acs.Chemrestox.8B00055 |
0.469 |
|
| 2018 |
Mills CL, Garg R, Lee JS, Tian L, Suciu A, Cooperman G, Beuning PJ, Jo Ondrechen M. Functional classification of protein structures by local structure matching in graph representation. Protein Science : a Publication of the Protein Society. PMID 29604149 DOI: 10.1002/Pro.3416 |
0.402 |
|
| 2018 |
Parasuram R, Coulther TA, Hollander JM, Keston-Smith E, Ondrechen MJ, Beuning PJ. Prediction of active site and distal residues in E. coli DNA polymerase III alpha polymerase activity. Biochemistry. PMID 29341605 DOI: 10.1021/Acs.Biochem.7B01004 |
0.721 |
|
| 2017 |
Beuning PJ. DNA Polymerases: From Molecular Mechanisms to Human Disease, a Special Issue. Chemical Research in Toxicology. 30: 1921. PMID 29151356 DOI: 10.1021/Acs.Chemrestox.7B00261 |
0.35 |
|
| 2017 |
Antczak NM, Packer MR, Lu X, Zhang K, Beuning PJ. Human Y-family DNA polymerase kappa is more tolerant to changes in its active site loop than its ortholog E. coli DinB. Chemical Research in Toxicology. PMID 28823149 DOI: 10.1021/Acs.Chemrestox.7B00175 |
0.515 |
|
| 2017 |
Murison DA, Timson RC, Koleva B, Ordazzo M, Beuning PJ. Identification of the dimer exchange interface of the bacterial DNA damage response protein UmuD. Biochemistry. PMID 28806503 DOI: 10.1021/Acs.Biochem.7B00560 |
0.472 |
|
| 2017 |
Murison DA, Ollivierre JN, Huang Q, Budil DE, Beuning PJ. Altering the N-terminal arms of the polymerase manager protein UmuD modulates protein interactions. Plos One. 12: e0173388. PMID 28273172 DOI: 10.1371/Journal.Pone.0173388 |
0.798 |
|
| 2017 |
Alyami EM, Rizzo AA, Beuning PJ, Korzhnev DM. NMR resonance assignments for the N-terminal domain of the δ subunit of the E. coli γ clamp loader complex. Biomolecular Nmr Assignments. PMID 28265855 DOI: 10.1007/S12104-017-9741-Z |
0.406 |
|
| 2017 |
Naufer MN, Murison DA, Rouzina I, Beuning PJ, Williams MC. Single-molecule mechanochemical characterization of E. coli pol III core catalytic activity. Protein Science : a Publication of the Protein Society. PMID 28263430 DOI: 10.1002/Pro.3152 |
0.379 |
|
| 2017 |
Naufer MN, Murison DA, Rouzina I, Beuning PJ, Williams MC. Single-Molecule Characterization of E. Coli Pol III Core Catalytic Activity Biophysical Journal. 112: 514a. DOI: 10.1016/J.Bpj.2016.11.2778 |
0.426 |
|
| 2016 |
Fornander LH, Frykholm K, Fritzsche J, Araya J, Nevin P, Werner E, Cakir A, Persson F, Garcin EB, Beuning PJ, Mehlig B, Modesti M, Westerlund F. Visualizing the non-homogeneous structure of RAD51 filaments using nanofluidic channels. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 27479732 DOI: 10.1021/Acs.Langmuir.6B01877 |
0.436 |
|
| 2015 |
Parasuram R, Mills CL, Wang Z, Somasundaram S, Beuning PJ, Ondrechen MJ. Local structure based method for prediction of the biochemical function of proteins: Applications to glycoside hydrolases. Methods (San Diego, Calif.). PMID 26564235 DOI: 10.1016/J.Ymeth.2015.11.010 |
0.67 |
|
| 2015 |
Hawver LA, Tehrani M, Antczak NM, Kania D, Muser S, Sefcikova J, Beuning PJ. Point mutations in Escherichia coli DNA pol V that confer resistance to non-cognate DNA damage also alter protein-protein interactions. Mutation Research. 780: 1-14. PMID 26218456 DOI: 10.1016/J.Mrfmmm.2015.07.003 |
0.494 |
|
| 2015 |
Nevin P, Lu X, Zhang K, Engen JR, Beuning PJ. Noncognate DNA damage prevents the formation of the active conformation of the Y-family DNA polymerases DinB and DNA polymerase κ. The Febs Journal. 282: 2646-60. PMID 25899385 DOI: 10.1111/Febs.13304 |
0.464 |
|
| 2015 |
Mills CL, Beuning PJ, Ondrechen MJ. Biochemical functional predictions for protein structures of unknown or uncertain function. Computational and Structural Biotechnology Journal. 13: 182-91. PMID 25848497 DOI: 10.1016/J.Csbj.2015.02.003 |
0.658 |
|
| 2015 |
Nevin P, Engen JR, Beuning PJ. Steric gate residues of Y-family DNA polymerases DinB and pol kappa are crucial for dNTP-induced conformational change. Dna Repair. 29: 65-73. PMID 25684709 DOI: 10.1016/J.Dnarep.2015.01.012 |
0.461 |
|
| 2015 |
Brodkin HR, DeLateur NA, Somarowthu S, Mills CL, Novak WR, Beuning PJ, Ringe D, Ondrechen MJ. Prediction of distal residue participation in enzyme catalysis. Protein Science : a Publication of the Protein Society. 24: 762-78. PMID 25627867 DOI: 10.1002/Pro.2648 |
0.781 |
|
| 2014 |
Cuccarese MF, Wang Y, Beuning PJ, O'Doherty GA. Cryptocaryol Structure-Activity Relationship Study of Cancer Cell Cytotoxicity and Ability to Stabilize PDCD4. Acs Medicinal Chemistry Letters. 5: 522-6. PMID 24900873 DOI: 10.1021/Ml4005039 |
0.72 |
|
| 2014 |
Fang J, Nevin P, Kairys V, Venclovas C, Engen JR, Beuning PJ. Conformational analysis of processivity clamps in solution demonstrates that tertiary structure does not correlate with protein dynamics. Structure (London, England : 1993). 22: 572-81. PMID 24613485 DOI: 10.1016/J.Str.2014.02.001 |
0.338 |
|
| 2014 |
Fornander LH, Persson F, Fritzsche J, Araya J, Nevin P, Beuning P, Modesti M, Frykholm K, Westerlund F. Using Nanofluidic Channels to Probe the Dynamics of Rad51-DNA Filaments Biophysical Journal. 106: 692a-693a. DOI: 10.1016/J.Bpj.2013.11.3830 |
0.414 |
|
| 2014 |
Beuning P, Silva MC, Nevin P, Chaurasiya KR, Ruslie C, Voortman L, Lone S, Ronayne EA, Williams MC. Interactions Between the E. Coli Sos Response Protein Umud and DNA Polymerase III Alpha Subunit Have Implications for Regulating Replication in Response to DNA Damage Biophysical Journal. 106: 230a-231a. DOI: 10.1016/J.Bpj.2013.11.1348 |
0.46 |
|
| 2013 |
Chaurasiya KR, Ruslie C, Silva MC, Voortman L, Nevin P, Lone S, Beuning PJ, Williams MC. Polymerase manager protein UmuD directly regulates Escherichia coli DNA polymerase III α binding to ssDNA. Nucleic Acids Research. 41: 8959-68. PMID 23901012 DOI: 10.1093/Nar/Gkt648 |
0.476 |
|
| 2013 |
Walsh JM, Ippoliti PJ, Ronayne EA, Rozners E, Beuning PJ. Discrimination against major groove adducts by Y-family polymerases of the DinB subfamily. Dna Repair. 12: 713-22. PMID 23791649 DOI: 10.1016/J.Dnarep.2013.05.006 |
0.655 |
|
| 2013 |
Ollivierre JN, Sikora JL, Beuning PJ. Dimer exchange and cleavage specificity of the DNA damage response protein UmuD. Biochimica Et Biophysica Acta. 1834: 611-20. PMID 23220418 DOI: 10.1016/J.Bbapap.2012.11.008 |
0.804 |
|
| 2013 |
Pant K, Nimitpattana S, Silva MC, Sefcikova J, Beuning PJ, Williams MC. Simultaneous Interaction of E. Coli Single Stranded DNA Binding Protein and Replicativedna Polymerase III Alpha Subunit with Single-Stranded DNA Molecules Biophysical Journal. 104: 74a. DOI: 10.1016/J.Bpj.2012.11.447 |
0.432 |
|
| 2013 |
Beuning PJ, Fang J, Nevin P, Engen JR. Conformational Analysis of Processivity Clamps Demonstrates that Protein Tertiary Structure Does Not Correlate with Dynamics Biophysical Journal. 104: 29a. DOI: 10.1016/J.Bpj.2012.11.198 |
0.375 |
|
| 2012 |
Ippoliti PJ, Delateur NA, Jones KM, Beuning PJ. Multiple strategies for translesion synthesis in bacteria. Cells. 1: 799-831. PMID 24710531 DOI: 10.3390/Cells1040799 |
0.48 |
|
| 2012 |
Walsh JM, Parasuram R, Rajput PR, Rozners E, Ondrechen MJ, Beuning PJ. Effects of non-catalytic, distal amino acid residues on activity of E. coli DinB (DNA polymerase IV). Environmental and Molecular Mutagenesis. 53: 766-76. PMID 23034734 DOI: 10.1002/Em.21730 |
0.776 |
|
| 2012 |
Walsh JM, Beuning PJ. Synthetic nucleotides as probes of DNA polymerase specificity. Journal of Nucleic Acids. 2012: 530963. PMID 22720133 DOI: 10.1155/2012/530963 |
0.649 |
|
| 2012 |
Silva MC, Nevin P, Ronayne EA, Beuning PJ. Selective disruption of the DNA polymerase III α-β complex by the umuD gene products. Nucleic Acids Research. 40: 5511-22. PMID 22406830 DOI: 10.1093/Nar/Gks229 |
0.428 |
|
| 2012 |
Beuning P, Ollivierre J, Sikora J. Conformational Dynamics of the E. Coli SOS Mutagenesis Protein UmuD Biophysical Journal. 102: 444a. DOI: 10.1016/J.Bpj.2011.11.2431 |
0.812 |
|
| 2012 |
Ruslie C, Chaurasiya K, Silva MC, Nevin P, Beuning PJ, Williams MC. Single Molecule DNA Interactions Between the E. Coli DNA Polymerase III α Subunit and the Polymerase Manager Protein UmuD Biophysical Journal. 102: 280a-281a. DOI: 10.1016/J.Bpj.2011.11.1550 |
0.402 |
|
| 2011 |
Ollivierre JN, Budil DE, Beuning PJ. Electron spin labeling reveals the highly dynamic N-terminal arms of the SOS mutagenesis protein UmuD. Molecular Biosystems. 7: 3183-6. PMID 21975937 DOI: 10.1039/C1Mb05334E |
0.755 |
|
| 2011 |
Somarowthu S, Brodkin HR, DAquino JA, Ringe D, Ondrechen MJ, Beuning PJ. A tale of two isomerases: Compact versus extended active sites in ketosteroid isomerase and phosphoglucose isomerase Biochemistry. 50: 9283-9295. PMID 21970785 DOI: 10.1021/Bi201089V |
0.789 |
|
| 2011 |
Hawver LA, Gillooly CA, Beuning PJ. Characterization of Escherichia coli UmuC active-site loops identifies variants that confer UV hypersensitivity. Journal of Bacteriology. 193: 5400-11. PMID 21784925 DOI: 10.1128/Jb.05301-11 |
0.489 |
|
| 2011 |
Fang J, Engen JR, Beuning PJ. Escherichia coli processivity clamp β from DNA polymerase III is dynamic in solution. Biochemistry. 50: 5958-68. PMID 21657794 DOI: 10.1021/Bi200580B |
0.412 |
|
| 2011 |
Walsh JM, Hawver LA, Beuning PJ. Escherichia coli Y family DNA polymerases. Frontiers in Bioscience (Landmark Edition). 16: 3164-82. PMID 21622227 DOI: 10.2741/3904 |
0.656 |
|
| 2011 |
Han GW, Ko J, Farr CL, Deller MC, Xu Q, Chiu HJ, Miller MD, Sefcikova J, Somarowthu S, Beuning PJ, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA, et al. Crystal structure of a metal-dependent phosphoesterase (YP_910028.1) from Bifidobacterium adolescentis: Computational prediction and experimental validation of phosphoesterase activity. Proteins. 79: 2146-60. PMID 21538547 DOI: 10.1002/Prot.23035 |
0.822 |
|
| 2011 |
Walsh JM, Bouamaied I, Brown T, Wilhelmsson LM, Beuning PJ. Discrimination against the cytosine analog tC by Escherichia coli DNA polymerase IV DinB. Journal of Molecular Biology. 409: 89-100. PMID 21477595 DOI: 10.1016/J.Jmb.2011.03.069 |
0.648 |
|
| 2011 |
Ollivierre JN, Sikora JL, Beuning PJ. The dimeric SOS mutagenesis protein UmuD is active as a monomer. The Journal of Biological Chemistry. 286: 3607-17. PMID 21118802 DOI: 10.1074/Jbc.M110.167254 |
0.812 |
|
| 2011 |
Walsh JM, Hawver LA, Beuning PJ. Escherichia coli Y family DNA polymerases Frontiers in Bioscience. 16: 3164-3182. DOI: 10.2741/3904 |
0.62 |
|
| 2011 |
Beuning P, Ollivierre JN, Sikora J. Multple Active Forms of UmuD Protein that Regulates Bacterial Mutagenesis Biophysical Journal. 100: 374a. DOI: 10.1016/J.Bpj.2010.12.2230 |
0.819 |
|
| 2010 |
Ollivierre JN, Fang J, Beuning PJ. The Roles of UmuD in Regulating Mutagenesis. Journal of Nucleic Acids. 2010. PMID 20936072 DOI: 10.4061/2010/947680 |
0.808 |
|
| 2010 |
Fang J, Rand KD, Silva MC, Wales TE, Engen JR, Beuning PJ. Conformational dynamics of the Escherichia coli DNA polymerase manager proteins UmuD and UmuD'. Journal of Molecular Biology. 398: 40-53. PMID 20206636 DOI: 10.1016/J.Jmb.2010.02.040 |
0.493 |
|
| 2010 |
Beuning PJ, Fang J, Sefcikova J, Silva MC, Engen JR. The Dynamic DNA Damage Inducible Protein UmuD Inhibits Replication Biophysical Journal. 98: 64a. DOI: 10.1016/J.Bpj.2009.12.363 |
0.5 |
|
| 2009 |
Beuning PJ, Chan S, Waters LS, Addepalli H, Ollivierre JN, Walker GC. Characterization of novel alleles of the Escherichia coli umuDC genes identifies additional interaction sites of UmuC with the beta clamp. Journal of Bacteriology. 191: 5910-20. PMID 19633075 DOI: 10.1128/Jb.00292-09 |
0.802 |
|
| 2009 |
Shurtleff BW, Ollivierre JN, Tehrani M, Walker GC, Beuning PJ. Steric gate variants of UmuC confer UV hypersensitivity on Escherichia coli. Journal of Bacteriology. 191: 4815-23. PMID 19482923 DOI: 10.1128/Jb.01742-08 |
0.804 |
|
| 2009 |
Beuning PJ, Fang JS, Sefcikova J, Engen JR. Regulation Of The DNA Damage Response By The DNA Polymerase Manager Protein UmuD Biophysical Journal. 96: 342a. DOI: 10.1016/J.Bpj.2008.12.1718 |
0.499 |
|
| 2009 |
Sefcikova J, Malcho J, Foley K, Beuning P. Quantitative Characterization of Interactions of the Escherichia Coli SOS DNA Damage Response Proteins UmuD and UmuD' with the Replicative DNA Polymerase Biophysical Journal. 96: 341a-342a. DOI: 10.1016/J.Bpj.2008.12.1714 |
0.475 |
|
| 2008 |
McCauley MJ, Shokri L, Sefcikova J, Venclovas C, Beuning PJ, Williams MC. Distinct double- and single-stranded DNA binding of E. coli replicative DNA polymerase III alpha subunit. Acs Chemical Biology. 3: 577-87. PMID 18652472 DOI: 10.1021/Cb8001107 |
0.455 |
|
| 2007 |
Jarosz DF, Beuning PJ, Cohen SE, Walker GC. Y-family DNA polymerases in Escherichia coli. Trends in Microbiology. 15: 70-7. PMID 17207624 DOI: 10.1016/J.Tim.2006.12.004 |
0.483 |
|
| 2007 |
Beuning PJ, Addepalli H, Walker GC. Active site mutations in the Y family DNA polymerase UmuC cause hypersensitivity to UV light and are dominant negative The Faseb Journal. 21. DOI: 10.1096/Fasebj.21.5.A659-B |
0.38 |
|
| 2006 |
Cruceanu M, Stephen AG, Beuning PJ, Gorelick RJ, Fisher RJ, Williams MC. Single DNA molecule stretching measures the activity of chemicals that target the HIV-1 nucleocapsid protein. Analytical Biochemistry. 358: 159-70. PMID 17034752 DOI: 10.1016/J.Ab.2006.08.037 |
0.387 |
|
| 2006 |
Beuning PJ, Simon SM, Godoy VG, Jarosz DF, Walker GC. Characterization of Escherichia coli translesion synthesis polymerases and their accessory factors. Methods in Enzymology. 408: 318-40. PMID 16793378 DOI: 10.1016/S0076-6879(06)08020-7 |
0.466 |
|
| 2006 |
Beuning PJ, Simon SM, Zemla A, Barsky D, Walker GC. A non-cleavable UmuD variant that acts as a UmuD' mimic. The Journal of Biological Chemistry. 281: 9633-40. PMID 16464848 DOI: 10.1074/Jbc.M511101200 |
0.364 |
|
| 2006 |
Beuning PJ, Sawicka D, Barsky D, Walker GC. Two processivity clamp interactions differentially alter the dual activities of UmuC. Molecular Microbiology. 59: 460-74. PMID 16390442 DOI: 10.1111/J.1365-2958.2005.04959.X |
0.387 |
|
| 2003 |
Wong FC, Beuning PJ, Silvers C, Musier-Forsyth K. An Isolated Class II Aminoacyl-tRNA Synthetase Insertion Domain Is Functional in Amino Acid Editing Journal of Biological Chemistry. 278: 52857-52864. PMID 14530268 DOI: 10.1074/Jbc.M309627200 |
0.394 |
|
| 2002 |
Wong FC, Beuning PJ, Nagan M, Shiba K, Musier-Forsyth K. Functional role of the prokaryotic proline-tRNA synthetase insertion domain in amino acid editing. Biochemistry. 41: 7108-15. PMID 12033945 DOI: 10.1021/Bi012178J |
0.393 |
|
| 2002 |
Beuning PJ, Nagan MC, Cramer CJ, Musier-Forsyth K, Gelpà JL, Bashford D. Efficient aminoacylation of the tRNA(Ala) acceptor stem: dependence on the 2:71 base pair. Rna (New York, N.Y.). 8: 659-70. PMID 12022232 DOI: 10.1017/S1355838202020277 |
0.319 |
|
| 2002 |
Lipman RS, Beuning PJ, Musier-Forsyth K, Hou YM. Amino acid activation of a dual-specificity tRNA synthetase is independent of tRNA. Journal of Molecular Biology. 316: 421-7. PMID 11866507 DOI: 10.1006/Jmbi.2001.5373 |
0.369 |
|
| 2002 |
Kallick DA, Nagan MC, Beuning PJ, Kerimo S, Tessmer MR, Cramer CJ, Musier-Forsyth K. Discrimination of C1:G72 microhelixAla by AlaRS is based on specific atomic groups rather than conformational effects: An NMR and MD analysis Journal of Physical Chemistry B. 106: 8878-8884. DOI: 10.1021/Jp020956R |
0.328 |
|
| 2001 |
Beuning PJ, Musier-Forsyth K. Species-specific Differences in Amino Acid Editing by Class II Prolyl-tRNA Synthetase Journal of Biological Chemistry. 276: 30779-30785. PMID 11408489 DOI: 10.1074/Jbc.M104761200 |
0.365 |
|
| 2000 |
Musier-Forsyth K, Beuning PJ. Role of zinc ion in translational accuracy becomes crystal clear Nature Structural Biology. 7: 435-436. PMID 10881182 DOI: 10.1038/75816 |
0.317 |
|
| 2000 |
Nagan MC, Beuning P, Musier-Forsyth K, Cramer CJ. Importance of discriminator base stacking interactions: molecular dynamics analysis of A73 microhelix(Ala) variants. Nucleic Acids Research. 28: 2527-34. PMID 10871402 DOI: 10.1093/Nar/28.13.2527 |
0.331 |
|
| 1999 |
Beuning PJ, Musier-Forsyth K. Transfer RNA recognition by aminoacyl-tRNA synthetases Biopolymers. 52: 1-28. PMID 10737860 DOI: 10.1002/(Sici)1097-0282(1999)52:1<1::Aid-Bip1>3.0.Co;2-W |
0.301 |
|
| 1999 |
Fischer AE, Beuning PJ, Musier-Forsyth K. Identification of discriminator base atomic groups that modulate the alanine aminoacylation reaction. The Journal of Biological Chemistry. 274: 37093-6. PMID 10601268 DOI: 10.1074/Jbc.274.52.37093 |
0.343 |
|
| 1997 |
Beuning PJ, Yang F, Schimmel P, Musier-Forsyth K. Specific atomic groups and RNA helix geometry in acceptor stem recognition by a tRNA synthetase Proceedings of the National Academy of Sciences of the United States of America. 94: 10150-10154. PMID 9294178 DOI: 10.1073/Pnas.94.19.10150 |
0.354 |
|
| 1997 |
Beuning PJ, Gulotta M, Musier-Forsyth K. Atomic group 'mutagenesis' reveals major groove fine interactions of a tRNA synthetase with an RNA helix Journal of the American Chemical Society. 119: 8397-8402. DOI: 10.1021/Ja971020C |
0.31 |
|
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