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Dexuan Xie - Publications

Affiliations: 
University of Wisconsin-Milwaukee, Milwaukee, WI 
Area:
Applied Mathematics, Molecular Biology
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36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Xie D, Audi SH, Dash RK. A size-modified poisson-boltzmann ion channel model in a solvent of multiple ionic species: Application to voltage-dependent anion channel. Journal of Computational Chemistry. 41: 218-230. PMID 31845398 DOI: 10.1002/Jcc.26091  0.345
2020 Chao Z, Xie D, Sameh AH. Preconditioners for nonsymmetric indefinite linear systems Journal of Computational and Applied Mathematics. 367: 112436. DOI: 10.1016/J.Cam.2019.112436  0.347
2019 Li J, Ying J, Xie D. On the analysis and application of an ion size-modified Poisson–Boltzmann equation Nonlinear Analysis-Real World Applications. 47: 188-203. DOI: 10.1016/J.Nonrwa.2018.10.011  0.35
2019 Volkmer HW, Xie D. Study of local and nonlocal Poisson–Boltzmann equations for linear and nonlinear models with spherical symmetry Journal of Computational and Applied Mathematics. 362: 653-662. DOI: 10.1016/J.Cam.2018.06.050  0.365
2018 Ying J, Xie D. An accelerated nonlocal Poisson-Boltzmann equation solver for electrostatics of biomolecule. International Journal For Numerical Methods in Biomedical Engineering. PMID 30021243 DOI: 10.1002/Cnm.3129  0.404
2018 Volkmer HW, Xie D. Series solution of a nonlocal dielectric test model for a solute ball with point charges in an ionic solvent Communications in Information and Systems. 18: 251-268. DOI: 10.4310/Cis.2018.V18.N4.A3  0.308
2017 Xie Y, Ying J, Xie D. SMPBS: Web server for computing biomolecular electrostatics using finite element solvers of size modified Poisson-Boltzmann equation. Journal of Computational Chemistry. PMID 28052351 DOI: 10.1002/Jcc.24703  0.348
2017 Ying J, Xie D. A hybrid solver of size modified Poisson–Boltzmann equation by domain decomposition, finite element, and finite difference Applied Mathematical Modelling. 58: 166-180. DOI: 10.1016/J.Apm.2017.09.026  0.397
2016 Xie D, Liu JL, Eisenberg B. Nonlocal Poisson-Fermi model for ionic solvent. Physical Review. E. 94: 012114. PMID 27575084 DOI: 10.1103/Physreve.94.012114  0.362
2016 Xie D, Volkmer HW, Ying J. Analytical solutions of nonlocal Poisson dielectric models with multiple point charges inside a dielectric sphere. Physical Review. E. 93: 043304. PMID 27176425 DOI: 10.1103/Physreve.93.043304  0.36
2016 Xie D, Jiang Y. A nonlocal modified Poisson-Boltzmann equation and finite element solver for computing electrostatics of biomolecules Journal of Computational Physics. 322: 1-20. DOI: 10.1016/J.Jcp.2016.06.028  0.39
2015 Li J, Xie D. A new linear Poisson-Boltzmann equation and finite element solver by solution decomposition approach Communications in Mathematical Sciences. 13: 315-325. DOI: 10.4310/Cms.2015.V13.N2.A2  0.39
2015 Jiang Y, Xie Y, Ying J, Xie D, Yu Z. SDPBS Web Server for Calculation of Electrostatics of Ionic Solvated Biomolecules Computational and Mathematical Biophysics. 3. DOI: 10.1515/Mlbmb-2015-0011  0.354
2015 Xie D, Li J. A new analysis of electrostatic free energy minimization and Poisson-Boltzmann equation for protein in ionic solvent Nonlinear Analysis: Real World Applications. 21: 185-196. DOI: 10.1016/J.Nonrwa.2014.07.008  0.432
2015 Ying J, Xie D. A new finite element and finite difference hybrid method for computing electrostatics of ionic solvated biomolecule Journal of Computational Physics. 298: 636-651. DOI: 10.1016/J.Jcp.2015.06.016  0.418
2015 Xie D, Ying J. A new box iterative method for a class of nonlinear interface problems with application in solving Poisson-Boltzmann equation Journal of Computational and Applied Mathematics. DOI: 10.1016/J.Cam.2016.01.005  0.444
2014 Jiang Y, Ying J, Xie D. A Poisson-Boltzmann Equation Test Model for Protein in Spherical Solute Region and its Applications Molecular Based Mathematical Biology. 2: 86-97. DOI: 10.2478/Mlbmb-2014-0006  0.339
2014 Xie D. New solution decomposition and minimization schemes for Poisson-Boltzmann equation in calculation of biomolecular electrostatics Journal of Computational Physics. 275: 294-309. DOI: 10.1016/J.Jcp.2014.07.012  0.393
2013 Xie D, Volkmer HW. A modified nonlocal continuum electrostatic model for protein in water and its analytical solutions for ionic born models Communications in Computational Physics. 13: 174-194. DOI: 10.4208/Cicp.170811.211011S  0.357
2013 Xie D, Jiang Y, Scott LR. Efficient Algorithms for a Nonlocal Dielectric Model for Protein in Ionic Solvent Siam Journal On Scientific Computing. 35. DOI: 10.1137/120899078  0.429
2012 Xie D, Jiang Y, Brune P, Scott LR. A fast solver for a nonlocal dielectric continuum model Siam Journal On Scientific Computing. 34: B107-B126. DOI: 10.1137/110839254  0.412
2011 Xie D. An improved approximate Newton method for implicit Runge-Kutta formulas Journal of Computational and Applied Mathematics. 235: 5249-5258. DOI: 10.1016/J.Cam.2011.05.027  0.422
2011 Xie D, Zarrouk MG. Convergence analysis of truncated incomplete Hessian Newton minimization method and application in biomolecular potential energy minimization Computational Optimization and Applications. 48: 213-232. DOI: 10.1007/S10589-009-9252-7  0.397
2011 Xie D, Scott LR. A new boundary integral equation for molecular electrostatics with charges over whole space Bit Numerical Mathematics. 51: 1051-1071. DOI: 10.1007/S10543-011-0329-1  0.335
2009 Xie D, Ni Q. An incomplete Hessian Newton minimization method and its application in a chemical database problem. Computational Optimization and Applications. 44: 467-485. PMID 20445822 DOI: 10.1007/S10589-008-9164-Y  0.521
2009 Xie D, Dash RK, Beard DA. An Improved Algorithm and Its Parallel Implementation for Solving a General Blood-Tissue Transport and Metabolism Model. Journal of Computational Physics. 228: 7850-7861. PMID 20161089 DOI: 10.1016/J.Jcp.2009.07.024  0.355
2009 Xie D. New parallel symmetric SOR preconditioners by multi-type partitioning International Journal of Computer Mathematics. 86: 287-300. DOI: 10.1080/00207160801965313  0.305
2007 Xie D, Zhou S. A new minimization protocol for solving nonlinear Poisson–Boltzmann mortar finite element equation Bit Numerical Mathematics. 47: 853-871. DOI: 10.1007/S10543-007-0145-9  0.389
2006 Xie D. A new block parallel sor method and its analysis Siam Journal On Scientific Computing. 27: 1513-1533. DOI: 10.1137/040604777  0.419
2005 Xie J, Butko P, Xie D. Molecular dynamics simulations of the cytolytic toxin Cyt1A in solution. Ieee Transactions On Nanobioscience. 4: 235-40. PMID 16220687 DOI: 10.1109/Tnb.2005.853659  0.317
2004 Xie D. Analysis of a class of parallel multigrid smoothers Bit Numerical Mathematics. 44: 813-828. DOI: 10.1007/S10543-004-3830-Y  0.329
2003 Xie D, Singh SB, Fluder EM, Schlick T. Principal component analysis combined with truncated-Newton minimization for dimensionality reduction of chemical databases Mathematical Programming, Series B. 95: 161-185. DOI: 10.1007/S10107-002-0345-7  0.342
2002 Xie D, Schlick T. A more lenient stopping rule for line search algorithms Optimization Methods and Software. 17: 683-700. DOI: 10.1080/1055678021000049363  0.36
2000 Xie D, Ridgway Scott L, Schlick T. Analysis of the SHAKE-SOR algorithm for constrained molecular dynamics simulations Methods and Applications of Analysis. 7: 577-590. DOI: 10.4310/Maa.2000.V7.N3.A11  0.307
1999 Xie D, Schlick T. Remark on Algorithm 702—the updated truncated Newton minimization package Acm Transactions On Mathematical Software. 25: 108-122. DOI: 10.1145/305658.305698  0.34
1999 Xie D, Schlick T. Efficient implementation of the truncated-newton algorithm for large-scale chemistry applications Siam Journal On Optimization. 10: 132-154. DOI: 10.1137/S1052623497313642  0.434
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