| Year |
Citation |
Score |
| 2017 |
Ye F, Chen ER, Nilsen TW. Kaposi's Sarcoma-Associated Herpesvirus Utilizes and Manipulates RNA N(6)-Adenosine Methylation to Promote Lytic Replication. Journal of Virology. PMID 28592530 DOI: 10.1128/Jvi.00466-17 |
0.406 |
|
| 2016 |
Tat TT, Maroney PA, Chamnongpol S, Coller J, Nilsen TW. Cotranslational microRNA mediated messenger RNA destabilization. Elife. 5. PMID 27058298 DOI: 10.7554/Elife.12880 |
0.402 |
|
| 2016 |
Tat TT, Maroney PA, Chamnongpol S, Coller J, Nilsen TW. Author response: Cotranslational microRNA mediated messenger RNA destabilization Elife. DOI: 10.7554/Elife.12880.019 |
0.548 |
|
| 2015 |
Nilsen TW. Preparing Cellular DNA from Nuclei or Whole Cells. Cold Spring Harbor Protocols. 2015: pdb.prot086314. PMID 26330625 DOI: 10.1101/Pdb.Prot086314 |
0.407 |
|
| 2015 |
Nilsen TW. Removal of rRNA from Deproteinized, Phenol-Extracted Total RNA by Hybrid Selection. Cold Spring Harbor Protocols. 2015: 784-5. PMID 26240407 DOI: 10.1101/Pdb.Prot086132 |
0.576 |
|
| 2015 |
Nilsen TW. Boundary Analysis to Determine the Minimal RNA Sequence Required for Protein Binding. Cold Spring Harbor Protocols. 2015: 662-5. PMID 26134905 DOI: 10.1101/Pdb.Prot081042 |
0.533 |
|
| 2015 |
Nilsen TW. Nucleotide analog interference mapping. Cold Spring Harbor Protocols. 2015: 604-8. PMID 26034303 DOI: 10.1101/Pdb.Prot081067 |
0.538 |
|
| 2015 |
Nilsen TW. Chemical modification interference. Cold Spring Harbor Protocols. 2015: 599-603. PMID 26034302 DOI: 10.1101/Pdb.Prot081059 |
0.571 |
|
| 2015 |
Nilsen TW. Measuring the length of poly(A) tails. Cold Spring Harbor Protocols. 2015: 413-8. PMID 25834263 DOI: 10.1101/Pdb.Prot081034 |
0.353 |
|
| 2015 |
Nilsen TW. Twenty years of RNA: then and now. Rna (New York, N.Y.). 21: 471-3. PMID 25780098 DOI: 10.1261/Rna.051284.115 |
0.522 |
|
| 2015 |
Nilsen TW. An alternative method for processing northern blots after capillary transfer. Cold Spring Harbor Protocols. 2015: 314-8. PMID 25734064 DOI: 10.1101/Pdb.Prot081026 |
0.479 |
|
| 2015 |
Nilsen TW. Poisoned primer extension. Cold Spring Harbor Protocols. 2015: pdb.prot080986. PMID 25561619 DOI: 10.1101/Pdb.Prot080986 |
0.401 |
|
| 2015 |
Nilsen TW. Direct chemical sequencing of end-labeled RNA. Cold Spring Harbor Protocols. 2015: pdb.prot080937. PMID 25561618 DOI: 10.1101/Pdb.Prot080937 |
0.579 |
|
| 2015 |
Nilsen TW. Twenty years of RNA: Then and now Rna. 21: 471-473. DOI: 10.1261/rna.051284.115 |
0.482 |
|
| 2015 |
Nilsen TW. Boundary analysis to determine the minimal RNA sequence required for protein binding Cold Spring Harbor Protocols. 2015: 662-666. DOI: 10.1101/pdb.prot081042 |
0.405 |
|
| 2015 |
Nilsen TW. Direct chemical sequencing of end-labeled RNA Cold Spring Harbor Protocols. 2015: 124-131. DOI: 10.1101/pdb.prot080937 |
0.456 |
|
| 2014 |
Nilsen TW. Mapping RNA–protein interactions using iodine footprinting Cold Spring Harbor Protocols. 2014: 1337-1341. PMID 25447283 DOI: 10.1101/Pdb.Prot080960 |
0.618 |
|
| 2014 |
Nilsen TW. Mapping RNA–protein interactions using hydroxyl-radical footprinting Cold Spring Harbor Protocols. 2014: 1333-1336. PMID 25447282 DOI: 10.1101/Pdb.Prot080952 |
0.562 |
|
| 2014 |
Nilsen TW. Detecting RNA–RNA interactions using psoralen derivatives Cold Spring Harbor Protocols. 2014: 996-1000. PMID 25183819 DOI: 10.1101/Pdb.Prot080861 |
0.566 |
|
| 2014 |
Nilsen TW. Detection of RNAs by 3′-end labeling and RNase H digestion Cold Spring Harbor Protocols. 2014: 789-792. PMID 24987142 DOI: 10.1101/Pdb.Prot080796 |
0.61 |
|
| 2014 |
Nilsen TW. Reverse footprinting to map sites of RNA–Protein interactions Cold Spring Harbor Protocols. 2014: 683-686. PMID 24890211 DOI: 10.1101/pdb.prot080804 |
0.435 |
|
| 2014 |
Nilsen TW. RNase footprinting to map sites of RNA–protein interactions Cold Spring Harbor Protocols. 2014: 677-682. PMID 24890210 DOI: 10.1101/Pdb.Prot080788 |
0.592 |
|
| 2014 |
Nilsen TW. 3′-end labeling of RNA with [5′-32P]cytidine 3′,5′-Bis(phosphate) and T4 RNA ligase 1 Cold Spring Harbor Protocols. 2014: 444-446. PMID 24692494 DOI: 10.1101/Pdb.Prot080713 |
0.5 |
|
| 2014 |
Nilsen TW. Internal mRNA methylation finally finds functions Science. 343: 1207-1208. PMID 24626918 DOI: 10.1126/Science.1249340 |
0.443 |
|
| 2013 |
Nilsen TW. Preparing size markers for gel electrophoresis Cold Spring Harbor Protocols. 2013: 1186-1189. PMID 24298031 DOI: 10.1101/Pdb.Prot079426 |
0.477 |
|
| 2013 |
Nilsen TW. RNA sequencing by primer extension Cold Spring Harbor Protocols. 2013: 1182-1185. PMID 24298029 DOI: 10.1101/Pdb.Prot079400 |
0.566 |
|
| 2013 |
Nilsen TW, Rio DC, Ares M. High-yield synthesis of RNA using T7 RNA polymerase and plasmid DNA or oligonucleotide templates. Cold Spring Harbor Protocols. 2013. PMID 24184762 DOI: 10.1101/Pdb.Prot078535 |
0.537 |
|
| 2013 |
Nilsen TW. Toeprinting Cold Spring Harbor Protocols. 2013: 896-899. PMID 24003204 DOI: 10.1101/pdb.prot077180 |
0.364 |
|
| 2013 |
Nilsen TW. The Fundamentals of RNA Purification Cold Spring Harbor Protocols. 8: 618-624. PMID 23818674 DOI: 10.1101/Pdb.Top075838 |
0.603 |
|
| 2013 |
Collins K, Nilsen TW. Enzyme engineering through evolution: Thermostable recombinant group II intron reverse transcriptases provide new tools for RNA research and biotechnology Rna. 19: 1017-1018. PMID 23793892 DOI: 10.1261/Rna.040451.113 |
0.495 |
|
| 2013 |
Nilsen TW. Analysis of pre-mRNA splicing using HeLa cell nuclear extracts Cold Spring Harbor Protocols. 8: 584-587. PMID 23734029 DOI: 10.1101/Pdb.Prot075184 |
0.5 |
|
| 2013 |
Nilsen TW. Preparation of nuclear extracts from HeLa cells Cold Spring Harbor Protocols. 8: 579-583. PMID 23734028 DOI: 10.1101/Pdb.Prot075176 |
0.315 |
|
| 2013 |
Nilsen TW. RNA structure determination using nuclease digestion Cold Spring Harbor Protocols. 8: 379-382. PMID 23547152 DOI: 10.1101/Pdb.Prot072330 |
0.591 |
|
| 2013 |
Nilsen TW. Detecting RNA-protein interactions by photocross-linking using RNA molecules containing uridine analogs. Cold Spring Harbor Protocols. 2013. PMID 23457347 DOI: 10.1101/Pdb.Prot073569 |
0.585 |
|
| 2013 |
Nilsen TW. Site-specific labeling of RNA. Cold Spring Harbor Protocols. 2013. PMID 23457342 DOI: 10.1101/Pdb.Prot072918 |
0.616 |
|
| 2013 |
Nilsen TW. Gel purification of RNA Cold Spring Harbor Protocols. 8: 180-183. PMID 23378657 DOI: 10.1101/Pdb.Prot072942 |
0.619 |
|
| 2013 |
Nilsen TW. RNA-friendly plasmid preparation Cold Spring Harbor Protocols. 8: 174-179. PMID 23378655 DOI: 10.1101/Pdb.Prot072926 |
0.376 |
|
| 2013 |
Nilsen TW. Determining the yield of RNA synthesized in vitro. Cold Spring Harbor Protocols. 2013. PMID 23282637 DOI: 10.1101/Pdb.Prot072629 |
0.618 |
|
| 2013 |
Nilsen TW. Splinted ligation method to detect small RNAs. Cold Spring Harbor Protocols. 2013. PMID 23282636 DOI: 10.1101/Pdb.Prot072611 |
0.595 |
|
| 2013 |
Nilsen TW. Detecting RNA-protein interactions by photocross-linking using RNA molecules containing uridine analogs Cold Spring Harbor Protocols. 8: 266-268. DOI: 10.1101/pdb.prot073569 |
0.498 |
|
| 2013 |
Nilsen TW. Site-specific labeling of RNA Cold Spring Harbor Protocols. 8: 269-275. DOI: 10.1101/pdb.prot072918 |
0.451 |
|
| 2012 |
Nilsen TW. Selective precipitation of large RNAs. Cold Spring Harbor Protocols. 2012. PMID 23209142 DOI: 10.1101/Pdb.Prot072322 |
0.585 |
|
| 2012 |
Nilsen TW. Removing rRNA from deproteinized, phenol-extracted total RNA by enzymatic digestion Cold Spring Harbor Protocols. 7: 1187-1188. PMID 23118366 DOI: 10.1101/Pdb.Prot072124 |
0.611 |
|
| 2012 |
Nilsen TW, Rio DC. In vitro transcription of labeled RNA: Synthesis, capping, and substitution Cold Spring Harbor Protocols. 7: 1181-1186. PMID 23118360 DOI: 10.1101/Pdb.Prot072066 |
0.593 |
|
| 2012 |
Nilsen TW. Selective precipitation of large RNAs Cold Spring Harbor Protocols. 7: 1302-1303. DOI: 10.1101/pdb.prot072322 |
0.477 |
|
| 2011 |
Baker KE, Nilsen TW. The Centrality of RNA, Then and Now Cell. 147: 962-963. DOI: 10.1016/J.Cell.2011.11.003 |
0.609 |
|
| 2010 |
Chamnongpol S, Maroney PA, Nilsen TW. A rapid, quantitative assay for direct detection of microRNAs and other small RNAs using splinted ligation. Methods in Molecular Biology (Clifton, N.J.). 667: 3-17. PMID 20827523 DOI: 10.1007/978-1-60761-811-9_1 |
0.611 |
|
| 2010 |
Rio DC, Ares M, Hannon GJ, Nilsen TW. Enrichment of poly(A)+ mRNA using immobilized oligo(dT). Cold Spring Harbor Protocols. 2010: pdb.prot5454. PMID 20647358 DOI: 10.1101/Pdb.Prot5454 |
0.626 |
|
| 2010 |
Rio DC, Ares M, Hannon GJ, Nilsen TW. Guidelines for the use of RNA purification kits. Cold Spring Harbor Protocols. 2010: pdb.ip79. PMID 20647349 DOI: 10.1101/Pdb.Ip79 |
0.644 |
|
| 2010 |
Rio DC, Ares M, Hannon GJ, Nilsen TW. Determining the yield and quality of purified RNA. Cold Spring Harbor Protocols. 2010: pdb.top82. PMID 20516190 DOI: 10.1101/Pdb.Top82 |
0.691 |
|
| 2010 |
Rio DC, Ares M, Hannon GJ, Nilsen TW. Nondenaturing agarose gel electrophoresis of RNA. Cold Spring Harbor Protocols. 2010: pdb.prot5445. PMID 20516183 DOI: 10.1101/Pdb.Prot5445 |
0.708 |
|
| 2010 |
Rio DC, Ares M, Hannon GJ, Nilsen TW. Polyacrylamide gel electrophoresis of RNA. Cold Spring Harbor Protocols. 2010: pdb.prot5444. PMID 20516182 DOI: 10.1101/Pdb.Prot5444 |
0.692 |
|
| 2010 |
Rio DC, Ares M, Hannon GJ, Nilsen TW. Removal of DNA from RNA. Cold Spring Harbor Protocols. 2010: pdb.prot5443. PMID 20516181 DOI: 10.1101/Pdb.Prot5443 |
0.649 |
|
| 2010 |
Rio DC, Ares M, Hannon GJ, Nilsen TW. Removal of ribosomal subunits (and rRNA) from cytoplasmic extracts before solubilization with SDS and deproteinization. Cold Spring Harbor Protocols. 2010: pdb.prot5442. PMID 20516180 DOI: 10.1101/Pdb.Prot5442 |
0.715 |
|
| 2010 |
Rio DC, Ares M, Hannon GJ, Nilsen TW. Preparation of cytoplasmic and nuclear RNA from tissue culture cells. Cold Spring Harbor Protocols. 2010: pdb.prot5441. PMID 20516179 DOI: 10.1101/Pdb.Prot5441 |
0.55 |
|
| 2010 |
Rio DC, Ares M, Hannon GJ, Nilsen TW. Ethanol precipitation of RNA and the use of carriers. Cold Spring Harbor Protocols. 2010: pdb.prot5440. PMID 20516178 DOI: 10.1101/Pdb.Prot5440 |
0.668 |
|
| 2010 |
Rio DC, Ares M, Hannon GJ, Nilsen TW. Purification of RNA using TRIzol (TRI reagent). Cold Spring Harbor Protocols. 2010: pdb.prot5439. PMID 20516177 DOI: 10.1101/Pdb.Prot5439 |
0.707 |
|
| 2010 |
Rio DC, Ares M, Hannon GJ, Nilsen TW. Purification of RNA by SDS solubilization and phenol extraction. Cold Spring Harbor Protocols. 2010: pdb.prot5438. PMID 20516176 DOI: 10.1101/Pdb.Prot5438 |
0.668 |
|
| 2010 |
Shaked H, Wachtel C, Tulinski P, Yahia NH, Barda O, Darzynkiewicz E, Nilsen TW, Michaeli S. Establishment of an in vitro trans-splicing system in Trypanosoma brucei that requires endogenous spliced leader RNA. Nucleic Acids Research. 38: e114. PMID 20159996 DOI: 10.1093/Nar/Gkq065 |
0.584 |
|
| 2010 |
Valadkhan S, Nilsen TW. Reprogramming of the non-coding transcriptome during brain development Journal of Biology. 9. PMID 20156321 DOI: 10.1186/Jbiol197 |
0.345 |
|
| 2010 |
Nilsen TW, Graveley BR. Expansion of the eukaryotic proteome by alternative splicing. Nature. 463: 457-63. PMID 20110989 DOI: 10.1038/Nature08909 |
0.394 |
|
| 2010 |
Rio DC, Ares M, Hannon GJ, Nilsen TW. Determining the yield and quality of purified RNA Cold Spring Harbor Protocols. 5. DOI: 10.1101/pdb.top82 |
0.612 |
|
| 2010 |
Rio DC, Ares M, Hannon GJ, Nilsen TW. Enrichment of poly(A)+ mRNA using immobilized oligo(dT) Cold Spring Harbor Protocols. 5. DOI: 10.1101/pdb.prot5454 |
0.581 |
|
| 2010 |
Rio DC, Ares M, Hannon GJ, Nilsen TW. Nondenaturing agarose gel electrophoresis of RNA Cold Spring Harbor Protocols. 5. DOI: 10.1101/pdb.prot5445 |
0.669 |
|
| 2010 |
Rio DC, Ares M, Hannon GJ, Nilsen TW. Polyacrylamide gel electrophoresis of RNA Cold Spring Harbor Protocols. 5. DOI: 10.1101/pdb.prot5444 |
0.734 |
|
| 2010 |
Rio DC, Ares M, Hannon GJ, Nilsen TW. Removal of DNA from RNA Cold Spring Harbor Protocols. 5. DOI: 10.1101/pdb.prot5443 |
0.609 |
|
| 2010 |
Rio DC, Ares M, Hannon GJ, Nilsen TW. Removal of ribosomal subunits (and rRNA) from cytoplasmic extracts before solubilization with SDS and deproteinization Cold Spring Harbor Protocols. 5. DOI: 10.1101/pdb.prot5442 |
0.575 |
|
| 2010 |
Rio DC, Ares M, Hannon GJ, Nilsen TW. Preparation of cytoplasmic and nuclear RNA from tissue culture cells Cold Spring Harbor Protocols. 5. DOI: 10.1101/pdb.prot5441 |
0.594 |
|
| 2010 |
Rio DC, Ares M, Hannon GJ, Nilsen TW. Ethanol precipitation of RNA and the use of carriers Cold Spring Harbor Protocols. 5. DOI: 10.1101/pdb.prot5440 |
0.564 |
|
| 2010 |
Rio DC, Ares M, Hannon GJ, Nilsen TW. Purification of RNA using TRIzol (TRI Reagent) Cold Spring Harbor Protocols. 5. DOI: 10.1101/pdb.prot5439 |
0.679 |
|
| 2010 |
Rio DC, Ares M, Hannon GJ, Nilsen TW. Purification of RNA by SDS solubilization and phenol extraction Cold Spring Harbor Protocols. 5. DOI: 10.1101/pdb.prot5438 |
0.713 |
|
| 2010 |
Rio DC, Ares MJ, Hannon GJ, Nilsen TW. Guidelines for the use of RNA purification kits Cold Spring Harbor Protocols. 5. DOI: 10.1101/pdb.ip79 |
0.722 |
|
| 2009 |
Stern MZ, Gupta SK, Salmon-Divon M, Haham T, Barda O, Levi S, Wachtel C, Nilsen TW, Michaeli S. Multiple roles for polypyrimidine tract binding (PTB) proteins in trypanosome RNA metabolism. Rna (New York, N.Y.). 15: 648-65. PMID 19218552 DOI: 10.1261/Rna.1230209 |
0.472 |
|
| 2008 |
Yu Y, Maroney PA, Denker JA, Zhang XHF, Dybkov O, Lührmann R, Jankowsky E, Chasin LA, Nilsen TW. Dynamic Regulation of Alternative Splicing by Silencers that Modulate 5′ Splice Site Competition Cell. 135: 1224-1236. PMID 19109894 DOI: 10.1016/J.Cell.2008.10.046 |
0.363 |
|
| 2008 |
Nilsen TW. Endo-siRNAs: Yet another layer of complexity in RNA silencing Nature Structural and Molecular Biology. 15: 546-548. PMID 18523465 DOI: 10.1038/Nsmb0608-546 |
0.598 |
|
| 2008 |
Maroney PA, Chamnongpol S, Souret F, Nilsen TW. Direct detection of small RNAs using splinted ligation Nature Protocols. 3: 279-287. PMID 18274530 DOI: 10.1038/Nprot.2007.530 |
0.616 |
|
| 2007 |
Nilsen TW. RNA 1997-2007: A Remarkable Decade of Discovery Molecular Cell. 28: 715-720. PMID 18082596 DOI: 10.1016/J.Molcel.2007.11.017 |
0.495 |
|
| 2007 |
Maroney PA, Chamnongpol S, Souret F, Nilsen TW. A rapid, quantitative assay for direct detection of microRNAs and other small RNAs using splinted ligation. Rna (New York, N.Y.). 13: 930-6. PMID 17456563 DOI: 10.1261/Rna.518107 |
0.499 |
|
| 2006 |
Maroney PA, Yu Y, Fisher J, Nilsen TW. Evidence that microRNAs are associated with translating messenger RNAs in human cells. Nature Structural & Molecular Biology. 13: 1102-7. PMID 17128271 DOI: 10.1038/Nsmb1174 |
0.357 |
|
| 2006 |
Bowers HA, Maroney PA, Fairman ME, Kastner B, Lührmann R, Nilsen TW, Jankowsky E. Discriminatory RNP remodeling by the DEAD-box protein DED1. Rna (New York, N.Y.). 12: 903-12. PMID 16556937 DOI: 10.1261/Rna.2323406 |
0.563 |
|
| 2004 |
Fairman ME, Maroney PA, Wang W, Bowers HA, Gollnick P, Nilsen TW, Jankowsky E. Protein displacement by DExH/D "RNA helicases" without duplex unwinding. Science (New York, N.Y.). 304: 730-4. PMID 15118161 DOI: 10.1126/Science.1095596 |
0.576 |
|
| 2004 |
deHaseth PL, Nilsen TW. Molecular biology. When a part is as good as the whole. Science (New York, N.Y.). 303: 1307-8. PMID 14988541 DOI: 10.1126/Science.1095483 |
0.587 |
|
| 2004 |
Nilsen TW. Too hot to splice. Nature Structural & Molecular Biology. 11: 208-9. PMID 14983169 DOI: 10.1038/Nsmb0304-208 |
0.326 |
|
| 2003 |
Nilsen TW. The spliceosome: the most complex macromolecular machine in the cell? Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 25: 1147-9. PMID 14635248 DOI: 10.1002/Bies.10394 |
0.519 |
|
| 2002 |
Denker JA, Zuckerman DM, Maroney PA, Nilsen TW. New components of the spliced leader RNP required for nematode trans-splicing. Nature. 417: 667-70. PMID 12050671 DOI: 10.1038/Nature00783 |
0.538 |
|
| 2002 |
Nilsen TW. The spliceosome: no assembly required? Molecular Cell. 9: 8-9. PMID 11804581 DOI: 10.1016/S1097-2765(02)00430-6 |
0.357 |
|
| 2001 |
Nilsen TW. Evolutionary origin of SL-addition trans-splicing: still an enigma. Trends in Genetics : Tig. 17: 678-80. PMID 11718904 DOI: 10.1016/S0168-9525(01)02499-4 |
0.391 |
|
| 2001 |
Romfo CM, Maroney PA, Wu S, Nilsen TW. 3' splice site recognition in nematode trans-splicing involves enhancer-dependent recruitment of U2 snRNP. Rna (New York, N.Y.). 7: 785-92. PMID 11421357 DOI: 10.1017/S1355838201010263 |
0.346 |
|
| 2000 |
Maroney PA, Romfo CM, Nilsen TW. Nuclease protection of RNAs containing site-specific labels: a rapid method for mapping RNA-protein interactions. Rna (New York, N.Y.). 6: 1905-9. PMID 11142388 DOI: 10.1017/S1355838200001308 |
0.539 |
|
| 2000 |
Nilsen TW. The case for an RNA enzyme. Nature. 408: 782-3. PMID 11130703 DOI: 10.1038/35048655 |
0.588 |
|
| 2000 |
Caprara MG, Nilsen TW. RNA: versatility in form and function. Nature Structural Biology. 7: 831-3. PMID 11017186 DOI: 10.1038/82816 |
0.583 |
|
| 2000 |
Maroney PA, Romfo CM, Nilsen TW. Functional recognition of 5' splice site by U4/U6.U5 tri-snRNP defines a novel ATP-dependent step in early spliceosome assembly. Molecular Cell. 6: 317-28. PMID 10983979 DOI: 10.1016/S1097-2765(00)00032-0 |
0.344 |
|
| 2000 |
Nilsen TW. RNA: Editor's note Rna. 6: 469. DOI: 10.1017/S1355838200009997 |
0.492 |
|
| 1999 |
Wu S, Romfo CM, Nilsen TW, Green MR. Functional recognition of the 3' splice site AG by the splicing factor U2AF35. Nature. 402: 832-5. PMID 10617206 DOI: 10.1038/45590 |
0.422 |
|
| 1999 |
Nilsen TW. Analysis of RNA structure and function using site-specific substitution or derivatization Methods (San Diego, Calif.). 18: 1-2. PMID 10208810 DOI: 10.1006/meth.1999.0750 |
0.419 |
|
| 1998 |
Nilsen TW. RNA-RNA Interactions in Nuclear Pre-mRNA Splicing Cold Spring Harbor Monograph Archive. 35: 279-307. DOI: 10.1101/087969509.35.279 |
0.582 |
|
| 1996 |
Nilsen TW. A parallel spliceosome. Science (New York, N.Y.). 273: 1813. PMID 8815545 DOI: 10.1126/Science.273.5283.1813 |
0.545 |
|
| 1996 |
Denker JA, Maroney PA, Yu YT, Kanost RA, Nilsen TW. Multiple requirements for nematode spliced leader RNP function in trans-splicing. Rna (New York, N.Y.). 2: 746-55. PMID 8752085 |
0.498 |
|
| 1995 |
Nilsen TW. trans-splicing: an update. Molecular and Biochemical Parasitology. 73: 1-6. PMID 8577317 DOI: 10.1016/0166-6851(94)00107-X |
0.433 |
|
| 1995 |
Maroney PA, Denker JA, Darzynkiewicz E, Laneve R, Nilsen TW. Most mRNAs in the nematode Ascaris lumbricoides are trans-spliced: a role for spliced leader addition in translational efficiency. Rna (New York, N.Y.). 1: 714-23. PMID 7585256 |
0.313 |
|
| 1994 |
Hannon GE, Hannon GJ, Maroney PA, Nilsen TW. Transcription of a nematode U1 small nuclear RNA in vitro. 3'-end formation requires cis-acting elements within the coding sequence. The Journal of Biological Chemistry. 269: 12387-90. PMID 8175641 |
0.618 |
|
| 1994 |
Denker JA, Nilsen TW. Characterization of a DNA-binding factor that recognizes the 22-base pair trans-spliced leader sequence in Ascaris lumbricoides. Molecular and Biochemical Parasitology. 66: 139-42. PMID 7984176 DOI: 10.1016/0166-6851(94)90044-2 |
0.631 |
|
| 1994 |
Shambaugh JD, Hannon GE, Nilsen TW. The spliceosomal U small nuclear RNAs of Ascaris lumbricoides. Molecular and Biochemical Parasitology. 64: 349-52. PMID 7935614 DOI: 10.1016/0166-6851(94)00040-9 |
0.576 |
|
| 1994 |
Nilsen TW. RNA-RNA interactions in the spliceosome: unraveling the ties that bind. Cell. 78: 1-4. PMID 7518355 DOI: 10.1016/0092-8674(94)90563-0 |
0.58 |
|
| 1993 |
Yu YT, Maroney PA, Nilsen TW. Functional reconstitution of U6 snRNA in nematode cis- and trans-splicing: U6 can serve as both a branch acceptor and a 5' exon. Cell. 75: 1049-59. PMID 8261508 DOI: 10.1016/0092-8674(93)90315-H |
0.378 |
|
| 1993 |
Nilsen TW. Trans-splicing of nematode premessenger RNA. Annual Review of Microbiology. 47: 413-40. PMID 8257104 DOI: 10.1146/Annurev.Mi.47.100193.002213 |
0.572 |
|
| 1992 |
Hannon GJ, Maroney PA, Yu YT, Hannon GE, Nilsen TW. Interaction of U6 snRNA with a sequence required for function of the nematode SL RNA in trans-splicing. Science (New York, N.Y.). 258: 1775-80. PMID 1465612 DOI: 10.1126/Science.1465612 |
0.681 |
|
| 1992 |
Nilsen TW. Trans-splicing in protozoa and helminths. Infectious Agents and Disease. 1: 212-8. PMID 1365548 |
0.528 |
|
| 1991 |
Maroney PA, Hannon GJ, Shambaugh JD, Nilsen TW. Intramolecular base pairing between the nematode spliced leader and its 5' splice site is not essential for trans-splicing in vitro. The Embo Journal. 10: 3869-75. PMID 1935906 DOI: 10.1002/J.1460-2075.1991.Tb04956.X |
0.674 |
|
| 1991 |
Hannon GJ, Maroney PA, Nilsen TW. U small nuclear ribonucleoprotein requirements for nematode cis- and trans-splicing in vitro. The Journal of Biological Chemistry. 266: 22792-5. PMID 1835972 |
0.563 |
|
| 1991 |
Hannon GJ, Chubb A, Maroney PA, Hannon G, Altman S, Nilsen TW. Multiple cis-acting elements are required for RNA polymerase III transcription of the gene encoding H1 RNA, the RNA component of human RNase P. The Journal of Biological Chemistry. 266: 22796-9. PMID 1720774 |
0.646 |
|
| 1990 |
Hannon GJ, Maroney PA, Ayers DG, Shambaugh JD, Nilsen TW. Transcription of a nematode trans-spliced leader RNA requires internal elements for both initiation and 3' end-formation. The Embo Journal. 9: 1915-21. PMID 2347310 DOI: 10.1002/J.1460-2075.1990.Tb08318.X |
0.697 |
|
| 1990 |
Baer M, Nilsen TW, Costigan C, Altman S. Structure and transcription of a human gene for H1 RNA, the RNA component of human RNase P. Nucleic Acids Research. 18: 97-103. PMID 2308839 DOI: 10.1093/Nar/18.1.97 |
0.501 |
|
| 1990 |
Maroney PA, Hannon GJ, Nilsen TW. Transcription and cap trimethylation of a nematode spliced leader RNA in a cell-free system. Proceedings of the National Academy of Sciences of the United States of America. 87: 709-13. PMID 2300557 DOI: 10.1073/Pnas.87.2.709 |
0.728 |
|
| 1990 |
Hannon GJ, Maroney PA, Denker JA, Nilsen TW. Trans splicing of nematode pre-messenger RNA in vitro. Cell. 61: 1247-55. PMID 2163760 DOI: 10.1016/0092-8674(90)90689-C |
0.653 |
|
| 1990 |
Maroney PA, Hannon GJ, Denker JA, Nilsen TW. The nematode spliced leader RNA participates in trans-splicing as an Sm snRNP. The Embo Journal. 9: 3667-73. PMID 2145151 DOI: 10.1002/J.1460-2075.1990.Tb07578.X |
0.708 |
|
| 1989 |
Nilsen TW, Shambaugh J, Denker J, Chubb G, Faser C, Putnam L, Bennett K. Characterization and expression of a spliced leader RNA in the parasitic nematode Ascaris lumbricoides var. suum. Molecular and Cellular Biology. 9: 3543-7. PMID 2796996 DOI: 10.1128/Mcb.9.8.3543 |
0.619 |
|
| 1989 |
Maroney PA, Hannon GJ, Nilsen TW. Accurate and efficient RNA polymerase III transcription in a cell-free extract prepared from Ascaris suum embryos. Molecular and Biochemical Parasitology. 35: 277-83. PMID 2747746 DOI: 10.1016/0166-6851(89)90214-4 |
0.667 |
|
| 1989 |
Ransohoff RM, Denker JA, Takacs AM, Hannon GJ, Nilsen TW. Organization and expression of 5S rRNA genes in the parasitic nematode, Brugia malayi. Nucleic Acids Research. 17: 3773-82. PMID 2734103 DOI: 10.1093/Nar/17.10.3773 |
0.561 |
|
| 1989 |
Nilsen TW. Trans-splicing in nematodes. Experimental Parasitology. 69: 413-6. PMID 2680571 DOI: 10.1016/0014-4894(89)90191-4 |
0.396 |
|
| 1989 |
Hannon GJ, Maroney PA, Branch A, Benenfield BJ, Robertson HD, Nilsen TW. Accurate processing of human pre-rRNA in vitro. Molecular and Cellular Biology. 9: 4422-31. PMID 2586517 DOI: 10.1128/Mcb.9.10.4422 |
0.623 |
|
| 1988 |
Takacs AM, Denker JA, Perrine KG, Maroney PA, Nilsen TW. A 22-nucleotide spliced leader sequence in the human parasitic nematode Brugia malayi is identical to the trans-spliced leader exon in Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America. 85: 7932-6. PMID 3186698 DOI: 10.1073/Pnas.85.21.7932 |
0.452 |
|
| 1987 |
Ransohoff RM, Narayan P, Ayers DF, Rottman FM, Nilsen TW. Priming of influenza mRNA transcription is inhibited in CHO cells treated with the methylation inhibitor, neplanocin A. Antiviral Research. 7: 317-27. PMID 3674853 DOI: 10.1016/0166-3542(87)90014-3 |
0.496 |
|
| 1986 |
Goodwin RG, Rottman FM, Callaghan T, Kung HJ, Maroney PA, Nilsen TW. c-erbB activation in avian leukosis virus-induced erythroblastosis: multiple epidermal growth factor receptor mRNAs are generated by alternative RNA processing. Molecular and Cellular Biology. 6: 3128-33. PMID 3023963 DOI: 10.1128/mcb.6.9.3128-3133.1986 |
0.377 |
|
| 1985 |
Ransohoff RM, Maroney PA, Nayak DP, Chambers TM, Nilsen TW. Effect of human alpha A interferon on influenza virus replication in MDBK cells. Journal of Virology. 56: 1049-52. PMID 4068143 DOI: 10.1128/Jvi.56.3.1049-1052.1985 |
0.362 |
|
| 1985 |
Nilsen TW, Maroney PA, Goodwin RG, Rottman FM, Crittenden LB, Raines MA, Kung HJ. c-erbB activation in ALV-induced erythroblastosis: novel RNA processing and promoter insertion result in expression of an amino-truncated EGF receptor. Cell. 41: 719-26. PMID 2988784 DOI: 10.1016/S0092-8674(85)80052-0 |
0.371 |
|
| 1984 |
Horowitz S, Horowitz A, Nilsen TW, Munns TW, Rottman FM. Mapping of N6-methyladenosine residues in bovine prolactin mRNA. Proceedings of the National Academy of Sciences of the United States of America. 81: 5667-71. PMID 6592581 DOI: 10.1073/Pnas.81.18.5667 |
0.449 |
|
| 1983 |
Nilsen TW, Maroney PA, Baglioni C. Maintenance of protein synthesis in spite of mRNA breakdown in interferon-treated HeLa cells infected with reovirus. Molecular and Cellular Biology. 3: 64-9. PMID 6828030 DOI: 10.1128/Mcb.3.1.64 |
0.542 |
|
| 1983 |
Baglioni C, Nilsen TW. Mechanisms of antiviral action of interferon. Interferon. 5: 23-42. PMID 6202642 |
0.381 |
|
| 1982 |
Nilsen TW, McCandless S, Baglioni C. 2', 5'-oligo(A)-activated endonuclease in NIH 3T3 mouse cells chronically infected with Moloney murine leukemia virus. Virology. 122: 498-502. PMID 7147712 DOI: 10.1016/0042-6822(82)90252-5 |
0.46 |
|
| 1982 |
Nilsen TW, Maroney PA, Baglioni C. Inhibition of protein synthesis in reovirus-infected HeLa cells with elevated levels of interferon-induced protein kinase activity. The Journal of Biological Chemistry. 257: 14593-6. PMID 6184367 |
0.498 |
|
| 1982 |
Nilsen TW, Maroney PA, Robertson HD, Baglioni C. Heterogeneous nuclear RNA promotes synthesis of (2',5')oligoadenylate and is cleaved by the (2',5')oligoadenylate-activated endoribonuclease. Molecular and Cellular Biology. 2: 154-60. PMID 6180300 DOI: 10.1128/Mcb.2.2.154 |
0.702 |
|
| 1982 |
Nilsen TW, Maroney PA, Baglioni C. Synthesis of (2'-5')oligoadenylate and activation of an endoribonuclease in interferon-treated HeLa cells infected with reovirus. Journal of Virology. 42: 1039-45. PMID 6178844 DOI: 10.1128/Jvi.42.3.1039-1045.1982 |
0.502 |
|
| 1982 |
Nilsen TW, Wood DL, Baglioni C. Presence of 2',5'-oligo(A) and of enzymes that synthesize, bind, and degrade 2',5'-oligo(A) in HeLa cell nuclei. The Journal of Biological Chemistry. 257: 1602-5. PMID 6173380 |
0.566 |
|
| 1981 |
Nilsen TW, Wood DL, Baglioni C. 2',5'-Oligo(A)-activated endoribonuclease. Tissue distribution and characterization with a binding assay. The Journal of Biological Chemistry. 256: 10751-4. PMID 7287731 |
0.456 |
|
| 1981 |
Baglioni C, D'Alessandro SB, Nilsen TW, den Hartog JA, Crea R, van Boom JH. Analogs of (2'-5')oligo(A). Endonuclease activation and inhibition of protein synthesis in intact cells. The Journal of Biological Chemistry. 256: 3253-7. PMID 6259158 |
0.458 |
|
| 1981 |
Nilsen TW, Wood DL, Baglioni C. Cross-linking of viral RNA by 4'-aminomethyl-4,5',8-trimethylpsoralen in HeLa cells infected with encephalomyocarditis virus and the tsG114 mutant of vesicular stomatitis virus. Virology. 109: 82-93. PMID 6258315 DOI: 10.1016/0042-6822(81)90473-6 |
0.606 |
|
| 1981 |
Baglioni C, Nilsen TW, Maroney PA, de Ferra F. Molecular mechanisms of action of interferon. Texas Reports On Biology and Medicine. 41: 471-8. PMID 6189211 |
0.376 |
|
| 1981 |
Baglioni C, Maroney PA, Nilsen TW. Assay for (2'-5')-oligo(A)-dependent endonuclease activity. Methods in Enzymology. 79: 249-57. PMID 6173668 DOI: 10.1016/S0076-6879(81)79036-0 |
0.603 |
|
| 1981 |
Baglioni C, Nilsen TW. The action of interferon at the molecular level. American Scientist. 69: 392-9. PMID 6169297 |
0.378 |
|
| 1981 |
Nilsen TW, Maroney PA, Baglioni C. Double-stranded RNA causes synthesis of 2',5'-oligo(A) and degradation of messenger RNA in interferon-treated cells. The Journal of Biological Chemistry. 256: 7806-11. PMID 6167569 |
0.666 |
|
| 1980 |
Baglioni C, Benvin S, Maroney PA, Minks MA, Nilsen TW, West DK. Interferon-induced enzymes: activation and role in te antiviral state. Annals of the New York Academy of Sciences. 350: 497-509. PMID 6165300 DOI: 10.1111/J.1749-6632.1980.Tb20652.X |
0.387 |
|
| 1980 |
Nilsen TW, Weissman SG, Baglioni C. Role of 2',5'-oligo(adenylic acid) polymerase in the degradation of ribonucleic acid linked to double-stranded ribonucleic acid by extracts of interferon-treated cells. Biochemistry. 19: 5574-9. PMID 6161640 DOI: 10.1021/Bi00565A018 |
0.685 |
|
| 1980 |
Nilsen TW, Wood DL, Baglioni C. Virus-specific effects of interferon in embryonal carcinoma cells. Nature. 286: 178-80. PMID 6157099 DOI: 10.1038/286178A0 |
0.47 |
|
| 1979 |
Nilsen TW, Baglioni C. Mechanism for discrimination between viral and host mRNA in interferon-treated cells. Proceedings of the National Academy of Sciences of the United States of America. 76: 2600-4. PMID 223150 DOI: 10.1073/Pnas.76.6.2600 |
0.641 |
|
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