| Year |
Citation |
Score |
| 2023 |
Ploetz E, Ambrose B, Barth A, Börner R, Erichson F, Kapanidis AN, Kim HD, Levitus M, Lohman TM, Mazumder A, Rueda D, Steffen FD, Cordes T, Magennis S, Lerner E. A new twist on PIFE: photoisomerisation-related fluorescence enhancement. Methods and Applications in Fluorescence. PMID 37726007 DOI: 10.1088/2050-6120/acfb58 |
0.558 |
|
| 2023 |
Kümmerlin M, Mazumder A, Kapanidis AN. Bleaching-resistant, Near-continuous Single-molecule Fluorescence and FRET Based on Fluorogenic and Transient DNA Binding. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. e202300175. PMID 37043705 DOI: 10.1002/cphc.202300175 |
0.643 |
|
| 2023 |
Ploetz E, Ambrose B, Barth A, Börner R, Erichson F, Kapanidis AN, Kim HD, Levitus M, Lohman TM, Mazumder A, Rueda D, Steffen FD, Cordes T, Magennis SW, Lerner E. A new twist on PIFE: photoisomerisation-related fluorescence enhancement. Arxiv. PMID 36866225 |
0.558 |
|
| 2021 |
Mazumder A, Ebright RH, Kapanidis AN. Transcription initiation at a consensus bacterial promoter proceeds via a 'bind-unwind-load-and-lock' mechanism. Elife. 10. PMID 34633286 DOI: 10.7554/eLife.70090 |
0.73 |
|
| 2021 |
Mazumder A, Wang A, Uhm H, Ebright RH, Kapanidis AN. RNA polymerase clamp conformational dynamics: long-lived states and modulation by crowding, cations, and nonspecific DNA binding. Nucleic Acids Research. PMID 33589919 DOI: 10.1093/nar/gkab074 |
0.734 |
|
| 2020 |
Mazumder A, Lin M, Kapanidis AN, Ebright RH. Closing and opening of the RNA polymerase trigger loop. Proceedings of the National Academy of Sciences of the United States of America. PMID 32571927 DOI: 10.1073/Pnas.1920427117 |
0.773 |
|
| 2020 |
Nova IC, Mazumder A, Craig JM, Laszlo AH, Noakes MT, Brinkerhoff HD, Yang S, Mount JW, Huang J, Ebright RH, Gundlach JH. Tracking Single RNAP Enzyme Steps and State Transitions During Elongation and Pausing with Nanopore Tweezers Biophysical Journal. 118: 29a. DOI: 10.1016/J.Bpj.2019.11.340 |
0.555 |
|
| 2020 |
Mazumder A, Ebright RH, Kapanidis AN. Single-molecule Analysis Reveals the Mechanism for DNA Opening in Transcription Initiation Biophysical Journal. 118: 29a. DOI: 10.1016/J.Bpj.2019.11.339 |
0.703 |
|
| 2019 |
Gilboa B, Jing B, Cui TJ, Sow M, Plochowietz A, Mazumder A, Kapanidis AN. Confinement-Free Wide-Field Ratiometric Tracking of Single Fluorescent Molecules. Biophysical Journal. PMID 31711608 DOI: 10.1016/J.Bpj.2019.10.033 |
0.635 |
|
| 2019 |
Mazumder A, Kapanidis AN. Recent Advances in Understanding σ70-Dependent Transcription Initiation Mechanisms. Journal of Molecular Biology. PMID 31082441 DOI: 10.1016/J.Jmb.2019.04.046 |
0.648 |
|
| 2019 |
Mazumder A. Monitoring Structural Transitions in RNA Polymerase using Single Molecule FRET Biophysical Journal. 116: 298a. DOI: 10.1016/J.Bpj.2018.11.1617 |
0.474 |
|
| 2019 |
Nova IC, Craig JM, Laszlo AH, Mazumder A, Brinkerhoff H, Derrington IM, Noakes MT, Mount JW, Huang J, Bowman J, Ebright RH, Gundlach JH. Determining Dynamics of RNA Polymerase Elongation and Pausing using Nanopore Tweezers Biophysical Journal. 116: 209a. DOI: 10.1016/J.Bpj.2018.11.1152 |
0.63 |
|
| 2018 |
Duchi D, Mazumder A, Malinen AM, Ebright RH, Kapanidis AN. The RNA polymerase clamp interconverts dynamically among three states and is stabilized in a partly closed state by ppGpp. Nucleic Acids Research. PMID 29878276 DOI: 10.1093/Nar/Gky482 |
0.75 |
|
| 2018 |
Lin W, Das K, Degen D, Mazumder A, Duchi D, Wang D, Ebright YW, Ebright RY, Sineva E, Gigliotti M, Srivastava A, Mandal S, Jiang Y, Liu Y, Yin R, et al. Structural Basis of Transcription Inhibition by Fidaxomicin (Lipiarmycin A3). Molecular Cell. PMID 29606590 DOI: 10.1016/J.Molcel.2018.02.026 |
0.694 |
|
| 2018 |
Roy K, Mazumder A, Ghosh P, Naiya G, Ghosh B, Roy S. A peptide-based synthetic transcription factor selectively activates transcription in a mammalian cell. Chemical Communications (Cambridge, England). PMID 29369310 DOI: 10.1039/C7Cc09279B |
0.342 |
|
| 2018 |
Nova IC, Mazumder A, Craig JM, Laszlo AH, Derrington IM, Noakes MT, Brinkerhoff H, Bowman J, Mount JW, Tickman BI, Ebright RH, Gundlach JH. Nanopore Tweezers Reveal Detailed RNA Polymerase Dynamics at a Sequence-Specific Pause Element Biophysical Journal. 114: 193a. DOI: 10.1016/J.Bpj.2017.11.1077 |
0.624 |
|
| 2017 |
Mazumder A, Batabyal S, Mondal M, Mondol T, Choudhury S, Ghosh R, Chatterjee T, Bhattacharyya D, Pal SK, Roy S. Specific DNA sequences allosterically enhance protein-protein interaction in a transcription factor through modulation of protein dynamics: implications for specificity of gene regulation. Physical Chemistry Chemical Physics : Pccp. PMID 28548177 DOI: 10.1039/C7Cp01193H |
0.396 |
|
| 2017 |
Gundlach JH, Derrington IM, Laszlo AH, Craig JM, Nova IC, Brinkerhoff H, Noakes MT, Ebright RH, Mazumder A. Single-Molecule Picometer Resolution Nanopore Tweezers Resolution Biophysical Journal. 112: 517a. DOI: 10.1016/J.Bpj.2016.11.2797 |
0.623 |
|
| 2017 |
Nova IC, Mazumder A, Derrington IM, Laszlo AH, Ebright RH, Gundlach JH. RNA Polymerase Transcription Elongation Pasuing and Termination Investigated at Super Resolution with the Mspa Nanopore Biophysical Journal. 112: 212a. DOI: 10.1016/J.Bpj.2016.11.1171 |
0.642 |
|
| 2015 |
Chakraborty A, Mazumder A, Lin M, Hasemeyer A, Xu Q, Wang D, Ebright YW, Ebright RH. Site-specific incorporation of probes into RNA polymerase by unnatural-amino-acid mutagenesis and Staudinger-Bertozzi ligation. Methods in Molecular Biology (Clifton, N.J.). 1276: 101-31. PMID 25665560 DOI: 10.1007/978-1-4939-2392-2_6 |
0.548 |
|
| 2013 |
Batabyal S, Mondol T, Choudhury S, Mazumder A, Pal SK. Ultrafast interfacial solvation dynamics in specific protein DNA recognition. Biochimie. 95: 2168-76. PMID 23973281 DOI: 10.1016/J.Biochi.2013.08.015 |
0.334 |
|
| 2012 |
Mazumder A, Bandyopadhyay S, Dhar A, Lewis DE, Deb S, Dey S, Chakrabarti P, Roy S. A genetic network that balances two outcomes utilizes asymmetric recognition of operator sites. Biophysical Journal. 102: 1580-9. PMID 22500758 DOI: 10.1016/J.Bpj.2012.01.052 |
0.308 |
|
| 2012 |
Mazumder A, Maiti A, Roy K, Roy S. A synthetic peptide mimic of λ-Cro shows sequence-specific binding in vitro and in vivo Acs Chemical Biology. 7: 1084-1094. PMID 22480451 DOI: 10.1021/Cb200523N |
0.349 |
|
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