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Chandra Verma, PhD - Publications

Affiliations: 
Bioinformatics Institute A*Star, Agency for Science Technology & Research 
Area:
Molecular Modeling, Structural Biology, p53, kinases
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Year Citation  Score
2020 Zhou L, Chan JCY, Chupin S, Gueguen N, Desquiret-Dumas V, Koh SK, Li J, Gao Y, Deng L, Verma C, Beuerman RW, Chan ECY, Milea D, Reynier P. Increased Protein -Glutathionylation in Leber's Hereditary Optic Neuropathy (LHON). International Journal of Molecular Sciences. 21. PMID 32344771 DOI: 10.3390/Ijms21083027  0.323
2020 Cocco E, Lee JE, Kannan S, Schram AM, Won HH, Shifman S, Kulick A, Baldino L, Toska E, Arena S, Mussolin B, Kannan R, Vasan N, Gorelick AN, Berger MF, ... ... Verma C, et al. Abstract 5680: TRK xDFG mutations trigger a sensitivity switch from type I to II kinase inhibitors Cancer Research. 80: 5680-5680. DOI: 10.1158/1538-7445.Am2020-5680  0.32
2019 Harish M, Kannan S, Puttagunta S, Pradhan M, Verma C, Venkatraman P. A novel determinant of PSMD9 PDZ binding guides the evolution of first generation of super binding peptides. Biochemistry. PMID 31287951 DOI: 10.1021/acs.biochem.9b00308  0.307
2018 Chan CY, Soh ACK, Kioh DYQ, Li J, Verma C, Koh SK, Beuerman RW, Zhou L, Chan ECY. Reactive Metabolite-induced Protein Glutathionylation: a Potentially Novel Mechanism Underlying Acetaminophen Hepatotoxicity. Molecular & Cellular Proteomics : McP. PMID 30006487 DOI: 10.1074/Mcp.Ra118.000875  0.32
2018 Kannan S, Venkatachalam G, Lim HH, Surana U, Verma C. Conformational landscape of the epidermal growth factor receptor kinase reveals a mutant specific allosteric pocket. Chemical Science. 9: 5212-5222. PMID 29997876 DOI: 10.1039/C8Sc01262H  0.39
2018 Wong YH, Kumar A, Liew CW, Tharakaraman K, Srinivasaraghavan K, Sasisekharan R, Verma C, Lescar J. Molecular basis for dengue virus broad cross-neutralization by humanized monoclonal antibody 513. Scientific Reports. 8: 8449. PMID 29855525 DOI: 10.1038/S41598-018-26800-Y  0.326
2018 Lau QY, Li J, Sani MA, Sinha S, Li Y, Ng FM, Kang C, Bhattacharjya S, Separovic F, Verma C, Chia CSB. Elucidating the bactericidal mechanism of action of the linear antimicrobial tetrapeptide BRBR-NH. Biochimica Et Biophysica Acta. PMID 29758185 DOI: 10.1016/J.Bbamem.2018.05.004  0.302
2017 Prasanna Kumar A, Nguyen MN, Verma C, Lukman S. Structural analysis of protein tyrosine phosphatase 1B reveals potentially druggable allosteric binding sites. Proteins. PMID 29235148 DOI: 10.1002/Prot.25440  0.369
2017 Kaan HYK, Sim AYL, Tan SKJ, Verma C, Song H. Targeting YAP/TAZ-TEAD protein-protein interactions using fragment-based and computational modeling approaches. Plos One. 12: e0178381. PMID 28570566 DOI: 10.1371/Journal.Pone.0178381  0.371
2017 Badowski C, Sim AYL, Verma C, Szeverényi I, Natesavelalar C, Terron-Kwiatkowski A, Harper J, O'Toole EA, Lane EB. Modeling the Structure of Keratin 1 and 10 Terminal Domains and their Misassembly in Keratoderma. The Journal of Investigative Dermatology. PMID 28526297 DOI: 10.1016/J.Jid.2017.03.038  0.303
2017 Irani MA, Kannan S, Verma C. Role of N-glycosylation in EGFR ectodomain ligand binding. Proteins. PMID 28486782 DOI: 10.1002/Prot.25314  0.346
2017 Kannan S, Pradhan MR, Tiwari G, Tan WC, Chowbay B, Tan EH, Tan DS, Verma C. Hydration effects on the efficacy of the Epidermal growth factor receptor kinase inhibitor afatinib. Scientific Reports. 7: 1540. PMID 28484248 DOI: 10.1038/S41598-017-01491-Z  0.328
2017 Lee XA, Verma C, Sim AYL. Designing dual inhibitors of Mdm2/MdmX: Unexpected coupling of water with gatekeeper Y100/99. Proteins. PMID 28425639 DOI: 10.1002/Prot.25310  0.379
2017 Li J, Hu Z, Beuerman RW, Verma CS. Molecular Environment Modulates Conformational Differences between Crystal and Solution States of Human beta-defensin 2. The Journal of Physical Chemistry. B. PMID 28294607 DOI: 10.1021/Acs.Jpcb.7B00083  0.337
2017 Loke JJ, Kumar A, Hoon S, Verma CS, Miserez A. Hierarchical Assembly of Tough Bioelastomeric Egg Capsules is Mediated by a Bundling Protein. Biomacromolecules. PMID 28196415 DOI: 10.1021/Acs.Biomac.6B01810  0.315
2017 Marzinek JK, Bag N, Huber RG, Holdbrook DA, Wohland T, Verma C, Bond PJ. Multiscale Dynamics of Flavivirus Fusion Peptides - Membrane Interactions via Simulation and Experiments Biophysical Journal. 112: 328a. DOI: 10.1016/J.Bpj.2016.11.1776  0.334
2017 Marzinek JK, Holdbrook D, Huber RG, Verma C, Bond PJ. Simulations Help Unravel Flavivirus Envelope Structure and Function Biophysical Journal. 112: 309a. DOI: 10.1016/J.Bpj.2016.11.1677  0.321
2016 Siau JW, Coffill CR, Zhang WV, Tan YS, Hundt J, Lane D, Verma C, Ghadessy F. Functional characterization of p53 pathway components in the ancient metazoan Trichoplax adhaerens. Scientific Reports. 6: 33972. PMID 27678309 DOI: 10.1038/Srep33972  0.332
2016 Marzinek JK, Holdbrook DA, Huber RG, Verma C, Bond PJ. Pushing the Envelope: Dengue Viral Membrane Coaxed into Shape by Molecular Simulations. Structure (London, England : 1993). PMID 27396828 DOI: 10.1016/J.Str.2016.05.014  0.302
2016 Ouaray Z, ElSawy KM, Lane DP, Essex JW, Verma C. Reactivation of mutant p53: Constraints on mechanism highlighted by principal component analysis of the DNA binding domain. Proteins. PMID 27317883 DOI: 10.1002/Prot.25089  0.376
2016 Aronica PG, Verma C, Popovic B, Leatherbarrow RJ, Gould IR. The Parasol Protocol for computational mutagenesis. Protein Engineering, Design & Selection : Peds. PMID 27255759 DOI: 10.1093/Protein/Gzw009  0.322
2016 Wei SJ, Chee S, Yurlova L, Lane D, Verma C, Brown C, Ghadessy F. Avoiding drug resistance through extended drug target interfaces: a case for stapled peptides. Oncotarget. PMID 27057630 DOI: 10.18632/Oncotarget.8572  0.356
2016 Chattopadhyay A, O'Connor CJ, Zhang F, Galvagnion C, Galloway WR, Tan YS, Stokes JE, Rahman T, Verma C, Spring DR, Itzhaki LS. Discovery of a small-molecule binder of the oncoprotein gankyrin that modulates gankyrin activity in the cell. Scientific Reports. 6: 23732. PMID 27046077 DOI: 10.1038/Srep23732  0.367
2016 Marzinek JK, Lakshminarayanan R, Goh E, Huber RG, Panzade S, Verma C, Bond PJ. Characterizing the Conformational Landscape of Flavivirus Fusion Peptides via Simulation and Experiment. Scientific Reports. 6: 19160. PMID 26785994 DOI: 10.1038/Srep19160  0.344
2016 Castel P, Ellis H, Bago R, Toska E, Srinivasaraghavan K, Carmona FJ, Razavi P, Verma C, Dickler M, Chandarlapaty S, Brogi E, Alessi D, Baselga J, Scaltriti M. Abstract 2107: PDK1 blockade overcomes intrinsic resistance to PI3Kα inhibition Cancer Research. 76: 2107-2107. DOI: 10.1158/1538-7445.Am2016-2107  0.303
2016 Kumar A, Kannan S, Lescar J, Verma C, Miserez A. Squid's Suckerin Proteins in Bits & Bytes Biophysical Journal. 110: 341a. DOI: 10.1016/J.Bpj.2015.11.1835  0.315
2015 Lau YH, Wu Y, Rossmann M, Tan BX, de Andrade P, Tan YS, Verma C, McKenzie GJ, Venkitaraman AR, Hyvönen M, Spring DR. Double Strain-Promoted Macrocyclization for the Rapid Selection of Cell-Active Stapled Peptides. Angewandte Chemie (International Ed. in English). 54: 15410-3. PMID 26768531 DOI: 10.1002/Anie.201508416  0.34
2015 Petrone L, Kumar A, Sutanto CN, Patil NJ, Kannan S, Palaniappan A, Amini S, Zappone B, Verma C, Miserez A. Mussel adhesion is dictated by time-regulated secretion and molecular conformation of mussel adhesive proteins. Nature Communications. 6: 8737. PMID 26508080 DOI: 10.1038/Ncomms9737  0.32
2015 Sangith N, Srinivasaraghavan K, Sahu I, Desai A, Medipally S, Somavarappu AK, Verma C, Venkatraman P. Corrigendum to "Discovery of novel interacting partners of PSMD9, a proteasomal chaperone: Role of an Atypical and versatile PDZ-domain motif interaction and identification of putative functional modules" [FEBS Open Bio 4 (2014) 571-583]. Febs Open Bio. 5: 731-2. PMID 26448906 DOI: 10.1016/J.Fob.2015.06.010  0.359
2015 Ochsenbein F, Morelli X, Verma C. Editorial. Protein-Protein Interaction Analysis and Modulation. Progress in Biophysics and Molecular Biology. 119: 1. PMID 26345255 DOI: 10.1016/J.Pbiomolbio.2015.08.019  0.301
2015 Narayan V, Landre V, Ning J, Hernychova L, Muller P, Verma C, Walkinshaw MD, Blackburn EA, Ball KL. Protein:protein Interactions Modulate the Docking-Dependent E3-Ubiquitin Ligase Activity of CHIP. Molecular & Cellular Proteomics : McP. PMID 26330542 DOI: 10.1074/Mcp.M115.051169  0.382
2015 Sim AY, Verma C. How does a hydrocarbon staple affect peptide hydrophobicity? Journal of Computational Chemistry. 36: 773-84. PMID 25706509 DOI: 10.1002/Jcc.23859  0.317
2015 Ma W, Fuentes G, Shi X, Verma C, Radda GK, Han W. FoxO1 negatively regulates leptin-induced POMC transcription through its direct interaction with STAT3. The Biochemical Journal. 466: 291-8. PMID 25510553 DOI: 10.1042/Bj20141109  0.72
2015 Ng YZ, Kannan S, Lane DP, Fuentes G, Verma CS. mAb806 binding to epidermal growth factor receptor: a computational study. Proteins. 83: 153-68. PMID 25370927 DOI: 10.1002/Prot.24714  0.693
2014 Sim AY, Joseph T, Lane DP, Verma C. Mechanism of Stapled Peptide Binding to MDM2: Possible Consequences for Peptide Design. Journal of Chemical Theory and Computation. 10: 1753-61. PMID 26580383 DOI: 10.1021/Ct4009238  0.36
2014 Chee SM, Wongsantichon J, Soo Tng Q, Robinson R, Joseph TL, Verma C, Lane DP, Brown CJ, Ghadessy FJ. Structure of a stapled peptide antagonist bound to nutlin-resistant Mdm2. Plos One. 9: e104914. PMID 25115702 DOI: 10.1371/Journal.Pone.0104914  0.362
2014 Sangith N, Srinivasaraghavan K, Sahu I, Desai A, Medipally S, Somavarappu AK, Verma C, Venkatraman P. Discovery of novel interacting partners of PSMD9, a proteasomal chaperone: Role of an Atypical and versatile PDZ-domain motif interaction and identification of putative functional modules. Febs Open Bio. 4: 571-83. PMID 25009770 DOI: 10.1016/J.Fob.2014.05.005  0.381
2014 Tan YS, Spring DR, Abell C, Verma C. The use of chlorobenzene as a probe molecule in molecular dynamics simulations. Journal of Chemical Information and Modeling. 54: 1821-7. PMID 24910248 DOI: 10.1021/Ci500215X  0.36
2014 Lau YH, de Andrade P, Sköld N, McKenzie GJ, Venkitaraman AR, Verma C, Lane DP, Spring DR. Investigating peptide sequence variations for 'double-click' stapled p53 peptides. Organic & Biomolecular Chemistry. 12: 4074-7. PMID 24817343 DOI: 10.1039/C4Ob00742E  0.309
2014 Goh WL, Lee MY, Joseph TL, Quah ST, Brown CJ, Verma C, Brenner S, Ghadessy FJ, Teo YN. Molecular rotors as conditionally fluorescent labels for rapid detection of biomolecular interactions. Journal of the American Chemical Society. 136: 6159-62. PMID 24494589 DOI: 10.1021/Ja413031H  0.335
2014 Lukman S, Verma CS, Fuentes G. Exploiting protein intrinsic flexibility in drug design. Advances in Experimental Medicine and Biology. 805: 245-69. PMID 24446365 DOI: 10.1007/978-3-319-02970-2_11  0.711
2013 Wei SJ, Joseph T, Chee S, Li L, Yurlova L, Zolghadr K, Brown C, Lane D, Verma C, Ghadessy F. Inhibition of nutlin-resistant HDM2 mutants by stapled peptides. Plos One. 8: e81068. PMID 24278380 DOI: 10.1371/Journal.Pone.0081068  0.341
2013 Pereira M, Verma CS, Fuentes G. Differences in the binding affinities of ErbB family: heterogeneity in the prediction of resistance mutants. Plos One. 8: e77054. PMID 24194858 DOI: 10.1371/Journal.Pone.0077054  0.698
2013 Hernychova L, Man P, Verma C, Nicholson J, Sharma CA, Ruckova E, Teo JY, Ball K, Vojtesek B, Hupp TR. Identification of a second Nutlin-3 responsive interaction site in the N-terminal domain of MDM2 using hydrogen/deuterium exchange mass spectrometry. Proteomics. 13: 2512-25. PMID 23776060 DOI: 10.1002/Pmic.201300029  0.409
2013 Wei SJ, Joseph T, Sim AY, Yurlova L, Zolghadr K, Lane D, Verma C, Ghadessy F. In vitro selection of mutant HDM2 resistant to Nutlin inhibition. Plos One. 8: e62564. PMID 23653682 DOI: 10.1371/Journal.Pone.0062564  0.372
2013 Zou H, Koh JJ, Li J, Qiu S, Aung TT, Lin H, Lakshminarayanan R, Dai X, Tang C, Lim FH, Zhou L, Tan AL, Verma C, Tan DT, Chan HS, et al. Design and synthesis of amphiphilic xanthone-based, membrane-targeting antimicrobials with improved membrane selectivity. Journal of Medicinal Chemistry. 56: 2359-73. PMID 23441632 DOI: 10.1021/Jm301683J  0.302
2013 Li J, Liu S, Lakshminarayanan R, Bai Y, Pervushin K, Verma C, Beuerman RW. Molecular simulations suggest how a branched antimicrobial peptide perturbs a bacterial membrane and enhances permeability. Biochimica Et Biophysica Acta. 1828: 1112-21. PMID 23274275 DOI: 10.1016/J.Bbamem.2012.12.015  0.301
2012 Li J, Lakshminarayanan R, Bai Y, Liu S, Zhou L, Pervushin K, Verma C, Beuerman RW. Molecular dynamics simulations of a new branched antimicrobial peptide: a comparison of force fields. The Journal of Chemical Physics. 137: 215101. PMID 23231260 DOI: 10.1063/1.4768899  0.31
2012 Zhou W, Motakis E, Fuentes G, Verma CS. Macrostate identification from biomolecular simulations through time series analysis. Journal of Chemical Information and Modeling. 52: 2319-24. PMID 22928709 DOI: 10.1021/Ci300341V  0.703
2012 Bai Y, Liu S, Li J, Lakshminarayanan R, Sarawathi P, Tang C, Ho D, Verma C, Beuerman RW, Pervushin K. Progressive structuring of a branched antimicrobial peptide on the path to the inner membrane target. The Journal of Biological Chemistry. 287: 26606-17. PMID 22700968 DOI: 10.1074/Jbc.M112.363259  0.302
2012 Sonkaria S, Fuentes G, Verma C, Narang R, Khare V, Fischer A, Faivre D. Insight into the assembly properties and functional organisation of the magnetotactic bacterial actin-like homolog, MamK. Plos One. 7: e34189. PMID 22586444 DOI: 10.1371/Journal.Pone.0034189  0.688
2012 Raghunathan D, Gayen S, Kumar A, Hunke C, Grüber G, Verma CS. Subunit F modulates ATP binding and migration in the nucleotide-binding subunit B of the A 1A O ATP synthase of Methanosarcina mazei Gö1 Journal of Bioenergetics and Biomembranes. 44: 213-224. PMID 22350011 DOI: 10.1007/S10863-012-9410-Y  0.701
2011 Fuentes G, Scaltriti M, Baselga J, Verma CS. Synergy between trastuzumab and pertuzumab for human epidermal growth factor 2 (Her2) from colocalization: an in silico based mechanism. Breast Cancer Research : Bcr. 13: R54. PMID 21600050 DOI: 10.1186/Bcr2888  0.661
2011 Tan YS, Fuentes G, Verma C. A comparison of the dynamics of pantothenate synthetase from M. tuberculosis and E. coli: computational studies. Proteins. 79: 1715-27. PMID 21425349 DOI: 10.1002/Prot.22994  0.701
2011 Dastidar SG, Raghunathan D, Nicholson J, Hupp TR, Lane DP, Verma CS. Chemical states of the N-terminal "lid" of MDM2 regulate p53 binding: simulations reveal complexities of modulation. Cell Cycle (Georgetown, Tex.). 10: 82-9. PMID 21191186 DOI: 10.4161/Cc.10.1.14345  0.74
2011 Zhou L, Liu SP, Chen LY, Li J, Ong LB, Guo L, Wohland T, Tang CC, Lakshminarayanan R, Mavinahalli J, Verma C, Beuerman RW. The structural parameters for antimicrobial activity, human epithelial cell cytotoxicity and killing mechanism of synthetic monomer and dimer analogues derived from hBD3 C-terminal region. Amino Acids. 40: 123-33. PMID 20397033 DOI: 10.1007/S00726-010-0565-8  0.327
2011 Fuentes G, Dastidar SG, Madhumalar A, Verma CS. Role of protein flexibility in the discovery of new drugs Drug Development Research. 72: 26-35. DOI: 10.1002/Ddr.20399  0.705
2010 Namboodiri S, Verma C, Dhar PK, Giuliani A, Nair AS. Sequence signatures of allosteric proteins towards rational design. Systems and Synthetic Biology. 4: 271-80. PMID 22132054 DOI: 10.1007/S11693-011-9072-9  0.333
2010 Pennell S, Westcott S, Ortiz-Lombardía M, Patel D, Li J, Nott TJ, Mohammed D, Buxton RS, Yaffe MB, Verma C, Smerdon SJ. Structural and functional analysis of phosphothreonine-dependent FHA domain interactions. Structure (London, England : 1993). 18: 1587-95. PMID 21134638 DOI: 10.1016/J.Str.2010.09.014  0.403
2010 Fraser JA, Madhumalar A, Blackburn E, Bramham J, Walkinshaw MD, Verma C, Hupp TR. A novel p53 phosphorylation site within the MDM2 ubiquitination signal: II. A model in which phosphorylation at Ser269 induces a mutant conformation to p53 Journal of Biological Chemistry. 285: 37773-37786. PMID 20847049 DOI: 10.1074/Jbc.M110.143107  0.345
2010 Ng YW, Raghunathan D, Chan PM, Baskaran Y, Smith DJ, Lee CH, Verma C, Manser E. Why an A-loop phospho-mimetic fails to activate PAK1: understanding an inaccessible kinase state by molecular dynamics simulations. Structure (London, England : 1993). 18: 879-90. PMID 20637424 DOI: 10.1016/J.Str.2010.04.011  0.728
2010 Grüber G, Raghunathan D, Gayen S, Verma CS. Crosstalk along the stalk: Dynamics of the interaction of subunits B and F in the A1AO ATP synthase of methanosarcina mazei Gö1 Biochemistry. 49: 4181-4190. PMID 20377205 DOI: 10.1021/Bi9021236  0.693
2010 Joseph TL, Madhumalar A, Brown CJ, Lane DP, Verma CS. Differential binding of p53 and nutlin to MDM2 and MDMX: computational studies. Cell Cycle (Georgetown, Tex.). 9: 1167-81. PMID 20190571 DOI: 10.4161/Cc.9.6.11067  0.371
2010 Mavinahalli JN, Madhumalar A, Beuerman RW, Lane DP, Verma C. Differences in the transactivation domains of p53 family members: a computational study. Bmc Genomics. 11: S5. PMID 20158876 DOI: 10.1186/1471-2164-11-S1-S5  0.369
2010 Brown CJ, Dastidar SG, See HY, Coomber DW, Ortiz-Lombardía M, Verma C, Lane DP. Rational design and biophysical characterization of thioredoxin-based aptamers: insights into peptide grafting. Journal of Molecular Biology. 395: 871-83. PMID 19895821 DOI: 10.1016/J.Jmb.2009.10.069  0.347
2009 Madhumalar A, Lee HJ, Brown CJ, Lane D, Verma C. Design of a novel MDM2 binding peptide based on the p53 family. Cell Cycle (Georgetown, Tex.). 8: 2828-36. PMID 19713735 DOI: 10.4161/Cc.8.17.9516  0.344
2009 Bai Y, Liu S, Jiang P, Zhou L, Li J, Tang C, Verma C, Mu Y, Beuerman RW, Pervushin K. Structure-dependent charge density as a determinant of antimicrobial activity of peptide analogues of defensin. Biochemistry. 48: 7229-39. PMID 19580334 DOI: 10.1021/Bi900670D  0.338
2009 Dastidar SG, Madhumalar A, Fuentes G, Lane DP, Verma CS. Forces mediating protein–protein interactions: a computational study of p53 “approaching” MDM2 Theoretical Chemistry Accounts. 125: 621-635. DOI: 10.1007/S00214-009-0682-1  0.711
2008 Lim WG, Chen X, Liu JP, Tan BJ, Zhou S, Smith A, Lees N, Hou L, Gu F, Yu XY, Du Y, Smith D, Verma C, Liu K, Duan W. The C-terminus of PRK2/PKNgamma is required for optimal activation by RhoA in a GTP-dependent manner. Archives of Biochemistry and Biophysics. 479: 170-8. PMID 18835241 DOI: 10.1016/J.Abb.2008.09.008  0.336
2008 Madhumalar A, Smith DJ, Verma C. Stability of the core domain of p53: insights from computer simulations. Bmc Bioinformatics. 9: S17. PMID 18315848 DOI: 10.1186/1471-2105-9-S1-S17  0.325
2007 Fuentes G, Ballesteros A, Verma CS. Enthalpic and entropic contributions in the transesterification of sucrose: computational study of lipases and subtilisin. Journal of Biomolecular Structure & Dynamics. 25: 145-55. PMID 17718593 DOI: 10.1080/07391102.2007.10507163  0.737
2006 Suresh A, Verma C. Modelling study of dimerization in mammalian defensins. Bmc Bioinformatics. 7: S17. PMID 17254301 DOI: 10.1186/1471-2105-7-S5-S17  0.315
2006 Yeong SS, Zhu Y, Smith D, Verma C, Lim WG, Tan BJ, Li QT, Cheung NS, Cai M, Zhu YZ, Zhou SF, Tan SL, Duan W. The last 10 amino acid residues beyond the hydrophobic motif are critical for the catalytic competence and function of protein kinase Calpha. The Journal of Biological Chemistry. 281: 30768-81. PMID 16895917 DOI: 10.1074/Jbc.M511278200  0.35
2006 Lim WG, Tan BJ, Zhu Y, Zhou S, Armstrong JS, Li QT, Dong Q, Chan E, Smith D, Verma C, Tan SL, Duan W. The very C-terminus of PRK1/PKN is essential for its activation by RhoA and downstream signaling. Cellular Signalling. 18: 1473-81. PMID 16427251 DOI: 10.1016/J.Cellsig.2005.11.009  0.348
2006 Zhu Y, Smith D, Verma C, Lim WG, Tan BJ, Armstrong JS, Zhou S, Chan E, Tan SL, Zhu YZ, Cheung NS, Duan W. The very C-terminus of protein kinase Cepsilon is critical for the full catalytic competence but its hydrophobic motif is dispensable for the interaction with 3-phosphoinositide-dependent kinase-1. Cellular Signalling. 18: 807-18. PMID 16137858 DOI: 10.1016/J.Cellsig.2005.07.005  0.36
2005 Akif M, Suhre K, Verma C, Mande SC. Conformational flexibility of Mycobacterium tuberculosis thioredoxin reductase: crystal structure and normal-mode analysis. Acta Crystallographica. Section D, Biological Crystallography. 61: 1603-11. PMID 16301794 DOI: 10.1107/S0907444905030519  0.307
2004 Fuentes G, Ballesteros A, Verma CS. Specificity in lipases: a computational study of transesterification of sucrose. Protein Science : a Publication of the Protein Society. 13: 3092-103. PMID 15557256 DOI: 10.1110/Ps.04724504  0.748
2004 Haire LF, Whyte SM, Vasisht N, Gill AC, Verma C, Dodson EJ, Dodson GG, Bayley PM. The crystal structure of the globular domain of sheep prion protein. Journal of Molecular Biology. 336: 1175-83. PMID 15037077 DOI: 10.1016/J.Jmb.2003.12.059  0.307
2003 Krzywda S, Brzozowski AM, Verma C, Karata K, Ogura T, Wilkinson AJ. The crystal structure of the AAA domain of the ATP-dependent protease FtsH of Escherichia coli at 1.5 A resolution. Structure (London, England : 1993). 10: 1073-83. PMID 12176385 DOI: 10.1016/S0969-2126(02)00806-7  0.341
2002 Fuentes G, Cruces MA, Plou FJ, Ballesteros A, Verma CS. Computational studies of subtilisin-catalyzed transesterification of sucrose: importance of entropic effects. Chembiochem : a European Journal of Chemical Biology. 3: 907-10. PMID 12210994 DOI: 10.1002/1439-7633(20020902)3:9<907::Aid-Cbic907>3.0.Co;2-6  0.708
2002 Brzozowski AM, Dodson EJ, Dodson GG, Murshudov GN, Verma C, Turkenburg JP, de Bree FM, Dauter Z. Structural origins of the functional divergence of human insulin-like growth factor-I and insulin. Biochemistry. 41: 9389-97. PMID 12135360 DOI: 10.1021/Bi020084J  0.323
1996 Gul S, Dhillon PS, Verma C, Thomas EW, Brocklehurst K. Investigation of electrostatic interactions and binding effects in papin-ligand interaction. Biochemical Society Transactions. 24: 473S. PMID 8879017 DOI: 10.1042/Bst024473S  0.325
1996 Sreedharan SK, Verma C, Caves LSD, Brocklehurst SM, Gharbia SE, Shah HN, Brocklehurst K. Demonstration that 1-trans-epoxysuccinyl-L-leucylamido-(4-guanidino) butane (E-64) is one of the most effective low Mr inhibitors of trypsin-catalysed hydrolysis. Characterization by kinetic analysis and by energy minimization and molecular dynamics simulation of the E-64-beta-trypsin complex. Biochemical Journal. 316: 777-786. PMID 8670152 DOI: 10.1042/Bj3160777  0.305
1996 Plou FJ, Kowlessur D, Malthouse JP, Mellor GW, Hartshorn MJ, Pinitglang S, Patel H, Topham CM, Thomas EW, Verma C, Brocklehurst K. Characterization of the electrostatic perturbation of a catalytic site (Cys)-S-/(His)-Im+H ion-pair in one type of serine proteinase architecture by kinetic and computational studies on chemically mutated subtilisin variants. Journal of Molecular Biology. 257: 1088-111. PMID 8632470 DOI: 10.1006/Jmbi.1996.0225  0.311
1995 Thomas MP, Verma C, Boyd SM, Brocklehurst K. The structural origins of the unusual specificities observed in the isolation of chymopapain M and actinidin by covalent chromatography and the lack of inhibition of chymopapain M by cystatin Biochemical Journal. 306: 39-46. PMID 7864827 DOI: 10.1042/Bj3060039  0.332
1994 Lawson DM, Brzozowski AM, Rety S, Verma C, Dodson GG. Probing the nature of substrate binding in Humicola lanuginosa lipase through X-ray crystallography and intuitive modelling. Protein Engineering. 7: 543-50. PMID 8029210 DOI: 10.1093/Protein/7.4.543  0.321
Low-probability matches (unlikely to be authored by this person)
2011 Lane DP, Brown C, Khoo KH, Goh A, Lin G, Liew HP, Verma C, Cheok CF. Abstract IA10: How the p53 pathway controls the response to chemotherapy Cancer Research. 71. DOI: 10.1158/1538-7445.Fbcr11-Ia10  0.299
2015 Li J, Liu S, Koh JJ, Zou H, Lakshminarayanan R, Bai Y, Pervushin K, Zhou L, Verma C, Beuerman RW. A novel fragment based strategy for membrane active antimicrobials against MRSA. Biochimica Et Biophysica Acta. 1848: 1023-31. PMID 25582665 DOI: 10.1016/J.Bbamem.2015.01.001  0.298
2011 Brown CJ, Dastidar SG, Quah ST, Lim A, Chia B, Verma CS. C-terminal substitution of MDM2 interacting peptides modulates binding affinity by distinctive mechanisms. Plos One. 6: e24122. PMID 21904608 DOI: 10.1371/journal.pone.0024122  0.296
1997 Gill R, Wallach B, Verma C, Ursø B, De Wolf E, Grötzinger J, Murray-Rust J, Pitts J, Wollmer A, De Meyts P, Wood S. Engineering the C-region of human insulin-like growth factor-1: implications for receptor binding. Protein Engineering. 9: 1011-9. PMID 8961354 DOI: 10.1093/Protein/9.11.1011  0.296
2013 ElSawy KM, Verma CS, Joseph TL, Lane DP, Twarock R, Caves LS. On the interaction mechanisms of a p53 peptide and nutlin with the MDM2 and MDMX proteins: a Brownian dynamics study. Cell Cycle (Georgetown, Tex.). 12: 394-404. PMID 23324352 DOI: 10.4161/Cc.23511  0.296
2013 Srinivasaraghavan K, Nacro K, Grüber G, Verma CS. Effect of Ser392 phosphorylation on the structure and dynamics of the polybasic domain of ADP ribosylation factor nucleotide site opener protein: a molecular simulation study. Biochemistry. 52: 7339-49. PMID 24083777 DOI: 10.1021/bi400912e  0.296
1999 Gill R, Verma C, Wallach B, Ursø B, Pitts J, Wollmer A, De Meyts P, Wood S. Modelling of the disulphide-swapped isomer of human insulin-like growth factor-1: implications for receptor binding. Protein Engineering. 12: 297-303. PMID 10325399 DOI: 10.1093/Protein/12.4.297  0.294
2009 Liu S, Zhou L, Chen L, Dastidar SG, Verma C, Li J, Tan D, Beuerman R. Effect of structural parameters of peptides on dimer formation and highly oxidized side products in the oxidation of thiols of linear analogues of human beta-defensin 3 by DMSO. Journal of Peptide Science : An Official Publication of the European Peptide Society. 15: 95-106. PMID 19108000 DOI: 10.1002/Psc.1100  0.294
2011 Medda F, Joseph TL, Pirrie L, Higgins M, Slawin AMZ, Lain S, Verma C, Westwood NJ. N1-Benzyl substituted cambinol analogues as isozyme selective inhibitors of the sirtuin family of protein deacetylases Medchemcomm. 2: 611-615. DOI: 10.1039/C1Md00023C  0.293
2018 Li J, Beuerman R, Verma C. The effect of molecular shape on oligomerization of hydrophobic drugs: Molecular simulations of ciprofloxacin and nutlin. The Journal of Chemical Physics. 148: 104902. PMID 29544273 DOI: 10.1063/1.5013056  0.293
2015 Lama D, Brown CJ, Lane DP, Verma CS. Gating by Tryptophan 73 Exposes a Cryptic Pocket at the Protein-Binding Interface of the Oncogenic eIF4E Protein. Biochemistry. PMID 26427906 DOI: 10.1021/Acs.Biochem.5B00812  0.293
2016 Kannan S, Lane DP, Verma CS. Long range recognition and selection in IDPs: the interactions of the C-terminus of p53. Scientific Reports. 6: 23750. PMID 27030593 DOI: 10.1038/Srep23750  0.291
2008 Liu S, Zhou L, Li J, Suresh A, Verma C, Foo YH, Yap EP, Tan DT, Beuerman RW. Linear analogues of human beta-defensin 3: concepts for design of antimicrobial peptides with reduced cytotoxicity to mammalian cells. Chembiochem : a European Journal of Chemical Biology. 9: 964-73. PMID 18350527 DOI: 10.1002/Cbic.200700560  0.291
2012 Lukman S, Robinson RC, Wales D, Verma CS. Conformational dynamics of capping protein and interaction partners: simulation studies. Proteins. 80: 1066-77. PMID 22253039 DOI: 10.1002/prot.24008  0.29
2010 Lane DP, Cheok CF, Brown C, Madhumalar A, Ghadessy FJ, Verma C. Mdm2 and p53 are highly conserved from placozoans to man. Cell Cycle (Georgetown, Tex.). 9: 540-7. PMID 20081368 DOI: 10.4161/Cc.9.3.10516  0.29
1998 Gul S, Pinitglang S, Thomas EW, Verma C, Brocklehurst K. Sensitivities of transition state geometries to P1-P2 binding in reactions of papain and actinidin. Biochemical Society Transactions. 26. PMID 9649846 DOI: 10.1042/Bst026S171  0.29
2017 Chen Y, Li T, Li J, Cheng S, Wang J, Verma C, Zhao Y, Wu C. Stabilization of peptides against proteolysis through disulfide-bridged conjugation with synthetic aromatics. Organic & Biomolecular Chemistry. PMID 28177025 DOI: 10.1039/C6Ob02786E  0.289
1997 Resmini M, Vigna R, Simms C, Barber NJ, Hagi-Pavli EP, Watts AB, Verma C, Gallacher G, Brocklehurst K. Characterization of the hydrolytic activity of a polyclonal catalytic antibody preparation by pH-dependence and chemical modification studies: evidence for the involvement of Tyr and Arg side chains as hydrogen-bond donors Biochemical Journal. 326: 279-287. PMID 9337880 DOI: 10.1042/Bj3260279  0.289
2014 Lau YH, De Andrade P, Quah ST, Rossmann M, Laraia L, Sköld N, Sum TJ, Rowling PJE, Joseph TL, Verma C, Hyvönen M, Itzhaki LS, Venkitaraman AR, Brown CJ, Lane DP, et al. Functionalised staple linkages for modulating the cellular activity of stapled peptides Chemical Science. 5: 1804-1809. DOI: 10.1039/C4Sc00045E  0.288
2017 Nguyen MN, Pradhan MR, Verma C, Zhong P. The interfacial character of antibody paratopes: analysis of antibody-antigen structures. Bioinformatics (Oxford, England). PMID 28633399 DOI: 10.1093/Bioinformatics/Btx389  0.287
2009 Scaltriti M, Verma C, Guzman M, Jimenez J, Parra JL, Pedersen K, Smith DJ, Landolfi S, Ramon y Cajal S, Arribas J, Baselga J. Lapatinib, a HER2 tyrosine kinase inhibitor, induces stabilization and accumulation of HER2 and potentiates trastuzumab-dependent cell cytotoxicity. Oncogene. 28: 803-14. PMID 19060928 DOI: 10.1038/Onc.2008.432  0.286
2018 Sawyer TK, Partridge AW, Kaan HYK, Juang YC, Lim S, Johannes C, Yuen TY, Verma C, Kannan S, Aronica P, Tan YS, Sherborne B, Ha S, Hochman J, Chen S, et al. Macrocyclic α helical peptide therapeutic modality: A perspective of learnings and challenges. Bioorganic & Medicinal Chemistry. PMID 29598901 DOI: 10.1016/J.Bmc.2018.03.008  0.286
2007 Verma C, Seebah S, Low SM, Zhou L, Liu SP, Li J, Beuerman RW. Defensins: Antimicrobial peptides for therapeutic development Biotechnology Journal. 2: 1353-1359. PMID 17886240 DOI: 10.1002/Biot.200700148  0.285
2005 Renugopalakrishnan V, Ortiz-Lombardía M, Verma C. Electrostatics of Cytochrome-c assemblies. Journal of Molecular Modeling. 11: 265-270. PMID 15868153 DOI: 10.1007/S00894-005-0244-Y  0.285
2019 Nguyen MN, Sen N, Lin MY, Joseph TL, Vaz C, Tanavde V, Way L, Hupp TR, Verma CS, Madhusudhan MS. Discovering Putative Protein Targets of Small Molecules: A Study of the p53 Activator Nutlin. Journal of Chemical Information and Modeling. PMID 30794402 DOI: 10.1021/Acs.Jcim.8B00762  0.283
2008 Nigham A, Tucker-Kellogg L, Mihalek I, Verma C, Hsu D. pFlexAna: detecting conformational changes in remotely related proteins. Nucleic Acids Research. 36: W246-51. PMID 18477634 DOI: 10.1093/Nar/Gkn259  0.282
2008 Scaltriti M, Verma C, Guzman M, Jimenez J, Parra J, Pedersen K, Landolfi S, Ramon Y Cajal S, Arribas J, Baselga J. Effect of lapatinib on accumulation of inactive HER2 at the cell membrane and on antibody-dependent cellular cytotoxicity (ADCC) mediated by trastuzumab: A novel mechanism for the enhanced effects of combined anti-HER2 therapy. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 26: 3594. PMID 27949368 DOI: 10.1200/Jco.2008.26.15_Suppl.3594  0.28
2010 Lane DP, Cheok CF, Brown CJ, Madhumalar A, Ghadessy FJ, Verma C. The Mdm2 and p53 genes are conserved in the Arachnids. Cell Cycle (Georgetown, Tex.). 9: 748-54. PMID 20160485 DOI: 10.4161/Cc.9.4.10616  0.28
2004 Svangård E, Göransson U, Smith D, Verma C, Backlund A, Bohlin L, Claeson P. Primary and 3-D modelled structures of two cyclotides from Viola odorata. Phytochemistry. 64: 135-42. PMID 12946412 DOI: 10.1016/S0031-9422(03)00218-8  0.279
2015 Koh JJ, Lin H, Caroline V, Chew YS, Pang LM, Aung TT, Li J, Lakshminarayanan R, Tan DT, Verma CS, Tan AL, Beuerman RW, Liu S. N-Lipidated Peptide Dimers: Effective Antibacterial Agents against Gram-Negative Pathogens through Lipopolysaccharide Permeabilization. Journal of Medicinal Chemistry. PMID 26214729 DOI: 10.1021/Acs.Jmedchem.5B00628  0.278
2020 Kumar AP, Verma CS, Lukman S. Structural dynamics and allostery of Rab proteins: strategies for drug discovery and design. Briefings in Bioinformatics. PMID 31950981 DOI: 10.1093/bib/bbz161  0.278
2015 Tan YS, Spring DR, Abell C, Verma CS. The Application of Ligand-Mapping Molecular Dynamics Simulations to the Rational Design of Peptidic Modulators of Protein-Protein Interactions. Journal of Chemical Theory and Computation. 11: 3199-3210. PMID 26575757 DOI: 10.1021/Ct5010577  0.276
2017 Tiwari G, Verma CS. Towards Understanding the Molecular Recognition of Albumin by p53 Activating Stapled-Peptide ATSP-7041. The Journal of Physical Chemistry. B. PMID 28048940 DOI: 10.1021/acs.jpcb.6b09900  0.275
2019 Coufalova D, Remnant L, Hernychova L, Muller P, Healy A, Kannan S, Vojtesek B, Westwood N, Verma CS, Vojtesek B, Hupp TR, Houston DR. An inter-subunit protein-peptide interface that stabilizes the specific activity and oligomerization of the AAA+ chaperone Reptin. Journal of Proteomics. PMID 30862565 DOI: 10.1016/J.Jprot.2019.02.012  0.275
2019 Yadahalli S, Neira JL, Johnson CM, Tan YS, Rowling PJE, Chattopadhyay A, Verma CS, Itzhaki LS. Kinetic and thermodynamic effects of phosphorylation on p53 binding to MDM2. Scientific Reports. 9: 693. PMID 30679555 DOI: 10.1038/S41598-018-36589-5  0.274
2015 Koh JJ, Lin S, Aung TT, Lim F, Zou H, Bai Y, Li J, Lin H, Pang LM, Koh WL, Salleh SM, Lakshminarayanan R, Zhou L, Qiu S, Pervushin K, ... Verma C, et al. Amino acid modified xanthone derivatives: novel, highly promising membrane-active antimicrobials for multidrug-resistant Gram-positive bacterial infections. Journal of Medicinal Chemistry. 58: 739-52. PMID 25474410 DOI: 10.1021/Jm501285X  0.274
2018 Iegre J, Ahmed NS, Gaynord JS, Wu Y, Herlihy KM, Tan YS, Lopes-Pires ME, Jha R, Lau YH, Sore HF, Verma C, O' Donovan DH, Pugh N, Spring DR. Stapled peptides as a new technology to investigate protein-protein interactions in human platelets. Chemical Science. 9: 4638-4643. PMID 29899957 DOI: 10.1039/C8Sc00284C  0.273
2007 Hui JL, Srinivasan D, Coomber D, Lane DP, Verma CS. Modulation of the p53-MDM2 interaction by phosphorylation of Thr18: A computational study Cell Cycle. 6: 2604-2611. PMID 17957142 DOI: 10.4161/Cc.6.21.4923  0.272
2011 Goudie DR, D'Alessandro M, Merriman B, Lee H, Szeverényi I, Avery S, O'Connor BD, Nelson SF, Coats SE, Stewart A, Christie L, Pichert G, Friedel J, Hayes I, Burrows N, ... ... Verma C, et al. Multiple self-healing squamous epithelioma is caused by a disease-specific spectrum of mutations in TGFBR1. Nature Genetics. 43: 365-9. PMID 21358634 DOI: 10.1038/Ng.780  0.271
2013 Kreisberg JF, Ong NT, Krishna A, Joseph TL, Wang J, Ong C, Ooi HA, Sung JC, Siew CC, Chang GC, Biot F, Cuccui J, Wren BW, Chan J, Sivalingam SP, ... ... Verma C, et al. Growth inhibition of pathogenic bacteria by sulfonylurea herbicides. Antimicrobial Agents and Chemotherapy. 57: 1513-7. PMID 23263008 DOI: 10.1128/Aac.02327-12  0.271
2015 Carmona FJ, Montemurro F, Kannan S, Rossi V, Verma C, Baselga J, Scaltriti M. AKT signaling in ERBB2-amplified breast cancer. Pharmacology & Therapeutics. PMID 26645663 DOI: 10.1016/J.Pharmthera.2015.11.013  0.267
2007 Hui JL, Gek HC, Krishnan A, Lane DP, Verma CS. Substrate specificity of cyclins determined by electrostatics Cell Cycle. 6: 2219-2226. PMID 17890901 DOI: 10.4161/Cc.6.18.4706  0.266
2022 Frosi Y, Ng S, Lin YC, Jiang S, Ramlan SR, Lama D, Verma CS, Asial I, Brown CJ. Development of a novel peptide aptamer that interacts with the eIF4E capped-mRNA binding site using peptide epitope linker evolution (PELE). Rsc Chemical Biology. 3: 916-930. PMID 35866173 DOI: 10.1039/d2cb00099g  0.266
1997 Pinitglang S, Patel M, Noble M, Sreedharan SK, Verma C, Thomas EW, Brocklehurst K. Effects of the quality of the P2-S2 hydrophobic contacts on the catalytic activities of papain, caricain and ficin and their generation by electrostatic switches. Biochemical Society Transactions. 25. PMID 9056986 DOI: 10.1042/Bst025088S  0.266
2013 ElSawy KM, Verma CS, Lane DP, Caves LS. On the origin of the stereoselective affinity of Nutlin-3 geometrical isomers for the MDM2 protein. Cell Cycle (Georgetown, Tex.). 12: 3727-35. PMID 24270847 DOI: 10.4161/Cc.27273  0.265
2016 Skotte NH, Sanders SS, Singaraja RR, Ehrnhoefer DE, Vaid K, Qiu X, Kannan S, Verma C, Hayden MR. Palmitoylation of caspase-6 by HIP14 regulates its activation. Cell Death and Differentiation. PMID 27911442 DOI: 10.1038/Cdd.2016.139  0.265
2012 Lane DP, Verma C. Mdm2 in evolution. Genes & Cancer. 3: 320-4. PMID 23150765 DOI: 10.1177/1947601912458285  0.265
2019 Kannan S, Partridge AW, Lane DP, Verma CS. The Dual Interactions of p53 with MDM2 and p300: Implications for the Design of MDM2 Inhibitors. International Journal of Molecular Sciences. 20. PMID 31795143 DOI: 10.3390/Ijms20235996  0.265
2016 Nguyen MN, Sim AY, Wan Y, Madhusudhan MS, Verma C. Topology independent comparison of RNA 3D structures using the CLICK algorithm. Nucleic Acids Research. PMID 27634929 DOI: 10.1093/Nar/Gkw819  0.264
2016 Ravi Kumar V, Verma C, Umapathy S. Molecular dynamics and simulations study on the vibrational and electronic solvatochromism of benzophenone. The Journal of Chemical Physics. 144: 064302. PMID 26874483 DOI: 10.1063/1.4941058  0.263
2012 Funston G, Goh W, Wei SJ, Tng QS, Brown C, Jiah Tong L, Verma C, Lane D, Ghadessy F. Binding of Translationally Controlled Tumour Protein to the N-terminal domain of HDM2 is inhibited by nutlin-3. Plos One. 7: e42642. PMID 22912717 DOI: 10.1371/Journal.Pone.0042642  0.262
2015 Iyengar PV, Jaynes P, Rodon L, Lama D, Law KP, Lim YP, Verma C, Seoane J, Eichhorn PJ. USP15 regulates SMURF2 kinetics through C-lobe mediated deubiquitination. Scientific Reports. 5: 14733. PMID 26435193 DOI: 10.1016/S0959-8049(16)61579-4  0.262
2013 Koh JJ, Qiu S, Zou H, Lakshminarayanan R, Li J, Zhou X, Tang C, Saraswathi P, Verma C, Tan DT, Tan AL, Liu S, Beuerman RW. Rapid bactericidal action of alpha-mangostin against MRSA as an outcome of membrane targeting. Biochimica Et Biophysica Acta. 1828: 834-44. PMID 22982495 DOI: 10.1016/J.Bbamem.2012.09.004  0.262
2011 Lane DP, Madhumalar A, Lee AP, Tay BH, Verma C, Brenner S, Venkatesh B. Conservation of all three p53 family members and Mdm2 and Mdm4 in the cartilaginous fish. Cell Cycle (Georgetown, Tex.). 10: 4272-9. PMID 22107961 DOI: 10.4161/Cc.10.24.18567  0.262
2016 Tan YS, Reeks J, Brown CJ, Thean D, Ferrer Gago FJ, Yuen TY, Goh ET, Lee XE, Jennings CE, Joseph TL, Lakshminarayanan R, Lane DP, Noble ME, Verma CS. Benzene Probes in Molecular Dynamics Simulations Reveal Novel Binding Sites for Ligand Design. The Journal of Physical Chemistry Letters. PMID 27532490 DOI: 10.1021/Acs.Jpclett.6B01525  0.261
2012 Vinekar R, Verma C, Ghosh I. Functional relevance of dynamic properties of Dimeric NADP-dependent Isocitrate Dehydrogenases. Bmc Bioinformatics. 13: S2. PMID 23281650 DOI: 10.1186/1471-2105-13-S17-S2  0.261
2015 Koh JJ, Zou H, Lin S, Lin H, Soh RT, Lim FH, Koh WL, Li J, Lakshminarayanan R, Verma C, Tan DT, Cao D, Beuerman RW, Liu S. Nonpeptidic Amphiphilic Xanthone Derivatives: Structure-Activity Relationship and Membrane-Targeting Properties. Journal of Medicinal Chemistry. PMID 26681070 DOI: 10.1021/Acs.Jmedchem.5B01500  0.26
1997 Watts A, Hafeez A, Gul S, Verma C, Thomas EW, Brocklehurst K. Effects of site-specific mutations on the kinetically influential ionizations of papain. Biochemical Society Transactions. 25. PMID 9056982 DOI: 10.1042/Bst025084S  0.259
2019 Kalathiya U, Padariya M, Pawlicka K, Verma CS, Houston D, Hupp TR, Alfaro JA. Insights into the Effects of Cancer Associated Mutations at the UPF2 and ATP-Binding Sites of NMD Master Regulator: UPF1. International Journal of Molecular Sciences. 20. PMID 31718065 DOI: 10.3390/ijms20225644  0.258
2012 Dastidar SG, Lane DP, Verma CS. Why is F19Ap53 unable to bind MDM2? Simulations suggest crack propagation modulates binding. Cell Cycle (Georgetown, Tex.). 11: 2239-47. PMID 22617389 DOI: 10.4161/Cc.20333  0.258
2014 Sim AY, Guilhot-Gaudeffroy A, Verma C, Minary P, Bernauer J. A Protein-RNA Knowledge-Based Potential for Scoring and Refinement Biophysical Journal. 106: 699a. DOI: 10.1016/J.Bpj.2013.11.3868  0.257
2011 Goudie DR, D'Alessandro M, Merriman B, Lee H, Szeverényi I, Avery S, O'Connor BD, Nelson SF, Coats SE, Stewart AA, Christie L, Pichert G, Friedel J, Hayes I, Burrows N, ... ... Verma C, et al. Abstract LB-245: Loss of function of the TGFβRI receptor leads to the spontaneously regressing squamous carcinoma condition, multiple self-healing squamous epithelioma (Ferguson-Smith disease) Cancer Research. 71. DOI: 10.1158/1538-7445.Am2011-Lb-245  0.257
2013 Lama D, Quah ST, Verma CS, Lakshminarayanan R, Beuerman RW, Lane DP, Brown CJ. Rational optimization of conformational effects induced by hydrocarbon staples in peptides and their binding interfaces. Scientific Reports. 3: 3451. PMID 24336354 DOI: 10.1038/Srep03451  0.257
2015 Kannan S, Poulsen A, Yang HY, Ho M, Ang SH, Eldwin TS, Jeyaraj DA, Chennamaneni LR, Liu B, Hill J, Verma CS, Nacro K. Probing the binding mechanism of Mnk inhibitors by docking and molecular dynamics simulations. Biochemistry. 54: 32-46. PMID 25431995 DOI: 10.1021/bi501261j  0.257
2016 Pradhan MR, Ouray Z, Kannan S, Lane DP, Verma CS. Dynamics of Aggregating Mutants of the P53 DNA Binding Domain Reveal A Novel “Druggable” Pocket Biophysical Journal. 110: 55a. DOI: 10.1016/J.Bpj.2015.11.361  0.256
2023 Jelinska C, Kannan S, Frosi Y, Ramlan SR, Winnerdy F, Lakshminarayanan R, Johannes CW, Brown CJ, Phan AT, Rhodes D, Verma CS. Stitched peptides as potential cell permeable inhibitors of oncogenic DAXX protein. Rsc Chemical Biology. 4: 1096-1110. PMID 38033728 DOI: 10.1039/d3cb00149k  0.253
2008 Dastidar SG, Lane DP, Verma CS. Multiple peptide conformations give rise to similar binding affinities: molecular simulations of p53-MDM2. Journal of the American Chemical Society. 130: 13514-5. PMID 18800837 DOI: 10.1021/Ja804289G  0.252
2014 Lescar J, Meyer I, Akshita K, Srinivasaraghavan K, Verma C, Palous M, Mazier D, Datry A, Fekkar A. Aspergillus fumigatus harbouring the sole Y121F mutation shows decreased susceptibility to voriconazole but maintained susceptibility to itraconazole and posaconazole The Journal of Antimicrobial Chemotherapy. 69: 3244-3247. PMID 25125676 DOI: 10.1093/Jac/Dku316  0.252
2021 Budhraja A, Pandey S, Kannan S, Verma CS, Venkatraman P. The polybasic insert, the RBD of the SARS-CoV-2 spike protein, and the feline coronavirus - evolved or yet to evolve. Biochemistry and Biophysics Reports. 25: 100907. PMID 33521335 DOI: 10.1016/j.bbrep.2021.100907  0.25
1999 Jääskeläine S, Verma CS, Hubbard RE, Caves LSD. Identifying key electrostatic interactions in Rhizomucor miehei lipase: the influence of solvent dielectric Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta). 101: 175-179. DOI: 10.1007/S002140050426  0.25
1999 Hussain S, Allen KK, Connerton IF, Cummings NJ, Gul S, Khan A, Taylor MAJ, Thomas EW, Verma C, Brocklehurst K. Investigation of electrostatic and hydrogen bonding interactions of caricain and caricain D158N with time-dependent inhibitors Biochemical Society Transactions. 27. DOI: 10.1042/Bst027A037A  0.249
2009 Dastidar SG, Lane DP, Verma CS. Modulation of p53 binding to MDM2: computational studies reveal important roles of Tyr100. Bmc Bioinformatics. 10: S6. PMID 19958516 DOI: 10.1186/1471-2105-10-S15-S6  0.248
2007 Seebah S, Suresh A, Zhuo S, Choong YH, Chua H, Chuon D, Beuerman R, Verma C. Defensins knowledgebase: a manually curated database and information source focused on the defensins family of antimicrobial peptides. Nucleic Acids Research. 35: D265-8. PMID 17090586 DOI: 10.1093/Nar/Gkl866  0.246
2017 Yadahalli S, Li J, Lane DP, Gosavi S, Verma CS. Characterizing the conformational landscape of MDM2-binding p53 peptides using Molecular Dynamics simulations. Scientific Reports. 7: 15600. PMID 29142290 DOI: 10.1038/S41598-017-15930-4  0.246
2017 Kannan S, Pradhan MR, Cherian J, Joseph TL, Poh ZY, Hai Yan Y, Melvyn H, Boping L, Jeffrey H, Nacro K, Verma CS. Small Molecules Targeting the Inactive Form of the Mnk1/2 Kinases. Acs Omega. 2: 7881-7891. PMID 30023565 DOI: 10.1021/acsomega.7b01403  0.245
2021 Kannan S, Aronica PGA, Nguyen TB, Li J, Verma CS. Computational Design of Macrocyclic Binders of S100B(ββ): Novel Peptide Theranostics. Molecules (Basel, Switzerland). 26. PMID 33573254 DOI: 10.3390/molecules26030721  0.245
2015 ElSawy KM, Sim A, Lane DP, Verma CS, Caves LS. A spatiotemporal characterization of the effect of p53 phosphorylation on its interaction with MDM2. Cell Cycle (Georgetown, Tex.). 14: 179-88. PMID 25584963 DOI: 10.4161/15384101.2014.989043  0.245
2015 Nguyen MN, Verma C. Rclick: a web server for comparison of RNA 3D structures. Bioinformatics (Oxford, England). 31: 966-8. PMID 25391398 DOI: 10.1093/Bioinformatics/Btu752  0.245
2010 Joseph TL, Lane D, Verma CS. Stapled peptides in the p53 pathway: computer simulations reveal novel interactions of the staples with the target protein. Cell Cycle (Georgetown, Tex.). 9: 4560-8. PMID 21088491 DOI: 10.4161/Cc.9.22.13816  0.244
2012 Zhou W, Quah ST, Verma CS, Liu Y, Lane DP, Brown CJ. Improved eIF4E binding peptides by phage display guided design: plasticity of interacting surfaces yield collective effects. Plos One. 7: e47235. PMID 23094039 DOI: 10.1371/Journal.Pone.0047235  0.243
2022 Frosi Y, Lin YC, Shimin J, Ramlan SR, Hew K, Engman AH, Pillai A, Yeung K, Cheng YX, Cornvik T, Nordlund P, Goh M, Lama D, Gates ZP, Verma CS, et al. Engineering an autonomous VH domain to modulate intracellular pathways and to interrogate the eIF4F complex. Nature Communications. 13: 4854. PMID 35982046 DOI: 10.1038/s41467-022-32463-1  0.243
2019 Pradhan MR, Siau JW, Kannan S, Nguyen MN, Ouaray Z, Kwoh CK, Lane DP, Ghadessy F, Verma CS. Simulations of mutant p53 DNA binding domains reveal a novel druggable pocket. Nucleic Acids Research. PMID 30649466 DOI: 10.1093/Nar/Gky1314  0.242
2013 Maity A, Yadav S, Verma CS, Ghosh Dastidar S. Dynamics of Bcl-xL in water and membrane: molecular simulations. Plos One. 8: e76837. PMID 24116174 DOI: 10.1371/journal.pone.0076837  0.241
2021 Heymann D, Mohanram H, Kumar A, Verma CS, Lescar J, Miserez A. Structure of a consensus chitin-binding domain revealed by solution NMR. Journal of Structural Biology. 107725. PMID 33744410 DOI: 10.1016/j.jsb.2021.107725  0.241
2014 Pal A, Verma C, Mortellaro A. 132 Cytokine. 70: 59. DOI: 10.1016/J.Cyto.2014.07.139  0.24
2019 Lama D, Liberatore AM, Frosi Y, Nakhle J, Tsomaia N, Bashir T, Lane DP, Brown CJ, Verma CS, Auvin S. Structural insights reveal a recognition feature for tailoring hydrocarbon stapled-peptides against the eukaryotic translation initiation factor 4E protein. Chemical Science. 10: 2489-2500. PMID 30881679 DOI: 10.1039/C8Sc03759K  0.239
2017 Chan JV, Ping Koh DX, Liu Y, Joseph TL, Lane DP, Verma CS, Tan YS. Role of the N-terminal lid in regulating the interaction of phosphorylated MDMX with p53. Oncotarget. 8: 112825-112840. PMID 29348869 DOI: 10.18632/Oncotarget.22829  0.237
1997 Brocklehurst K, Thomas EW, Verma C, Patel M, Sreedharan SK. Design and synthesis of substrate-derived n-acylaminoalkyl 2-pyridyl disulphides as probes of cysteine proteinase mechanism Biochemical Society Transactions. 25. PMID 9056990 DOI: 10.1042/Bst025092S  0.237
1998 Khan A, Connerton IF, Cummings NJ, Hussain S, Noble MA, Taylor MA, Thomas EW, Verma C, Brocklehurst K. The kinetically influential ionizations of caricain D158N revealed by using 4,4'-dipyrimidyl disulfide as a reactivity probe. Biochemical Society Transactions. 26: S172. PMID 9649847 DOI: 10.1042/Bst026S172  0.236
1997 Noble M, Abramson D, Verma C, Brocklehurst K. Evidence that the carboxy groups of Asp158 in papain and caricain have abnormally low pKa values and thus do not contribute the key ionisations with pKa 4 that generate catalytic competence. Biochemical Society Transactions. 25. PMID 9056988 DOI: 10.1042/Bst025090S  0.235
2019 Mohanram H, Kumar A, Verma CS, Pervushin K, Miserez A. Three-dimensional structure of Megabalanus rosa Cement Protein 20 revealed by multi-dimensional NMR and molecular dynamics simulations. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374: 20190198. PMID 31495314 DOI: 10.1098/Rstb.2019.0198  0.235
2020 Tan YS, Verma CS. Straightforward incorporation of multiple ligand types into molecular dynamics simulations for efficient binding site detection and characterization. Journal of Chemical Theory and Computation. PMID 32810406 DOI: 10.1021/acs.jctc.0c00405  0.233
2012 Fernandez-Recio J, Verma C. Theory and simulation: complexity and emergence. Current Opinion in Structural Biology. 22: 127-9. PMID 22417973 DOI: 10.1016/J.Sbi.2012.02.002  0.233
2018 Marzinek JK, Huber RG, Sharma KK, Wohland T, Verma C, Bond PJ. Molecular Simulations Detail the Thermal Expansion of the Pre-endosomal Dengue Virus Biophysical Journal. 114: 458a-459a. DOI: 10.1016/J.Bpj.2017.11.2532  0.233
2013 Lukman S, Lane DP, Verma CS. Mapping the structural and dynamical features of multiple p53 DNA binding domains: insights into loop 1 intrinsic dynamics. Plos One. 8: e80221. PMID 24324553 DOI: 10.1371/Journal.Pone.0080221  0.232
2012 ElSawy KM, Twarock R, Lane DP, Verma CS, Caves LS. Characterization of the Ligand Receptor Encounter Complex and Its Potential for in Silico Kinetics-Based Drug Development. Journal of Chemical Theory and Computation. 8: 314-21. PMID 26592892 DOI: 10.1021/Ct200560W  0.232
2015 Eichhorn PJA, Iyengar P, Jaynes P, Verma C. Abstract 4970: USP15 regulates SMURF2 kinetics through C-lobe mediated deubiquitination Cancer Research. 75: 4970-4970. DOI: 10.1158/1538-7445.Am2015-4970  0.231
1997 Gul S, Clarke A, Field B, Thomas MP, Willenbrock F, Pinitglang S, Verma C, Thomas EW, Brocklehurst K. Investigation of the electrostatic field of the papain active centre by using monoprotonated and diprotonated pyridyl (Py) disulphides as reactivity probes. Biochemical Society Transactions. 25. PMID 9056989 DOI: 10.1042/Bst025091S  0.23
2006 Stec E, Witkowska-Zimny M, Hryniewicz MM, Neumann P, Wilkinson AJ, Brzozowski AM, Verma CS, Zaim J, Wysocki S, Bujacz GD. Structural basis of the sulphate starvation response in E. coli: crystal structure and mutational analysis of the cofactor-binding domain of the Cbl transcriptional regulator. Journal of Molecular Biology. 364: 309-22. PMID 17010379 DOI: 10.1016/j.jmb.2006.06.033  0.23
2019 Pradhan M, Nguyen MN, Kannan S, Fox SJ, Kwoh CK, Lane DP, Verma CS. Characterization of hydration properties in structural ensemble of biomolecules. Journal of Chemical Information and Modeling. PMID 31140800 DOI: 10.1021/Acs.Jcim.8B00453  0.229
2014 Sanz FC, Montemurro F, Rossi V, Verma C, Berger M, Baselga J, Scaltriti M. 69 AKT3 activation mediates resistance to HER2-targeted therapies in HER2-amplified breast cancer European Journal of Cancer. 50: 27-28. DOI: 10.1016/S0959-8049(14)70195-9  0.228
2021 Lim S, Boyer N, Boo N, Huang C, Venkatachalam G, Angela Juang YC, Garrigou M, Kaan HYK, Duggal R, Peh KM, Sadruddin A, Gopal P, Yuen TY, Ng S, Kannan S, ... ... Verma CS, et al. Discovery of cell active macrocyclic peptides with on-target inhibition of KRAS signaling. Chemical Science. 12: 15975-15987. PMID 35024121 DOI: 10.1039/d1sc05187c  0.228
2020 Shivgan AT, Marzinek JK, Huber RG, Krah A, Henchman RH, Matsudaira P, Verma CS, Bond PJ. Extending the Martini Coarse-Grained Force Field to -Glycans. Journal of Chemical Information and Modeling. PMID 32702979 DOI: 10.1021/Acs.Jcim.0C00495  0.226
2015 Ng JW, Lama D, Lukman S, Lane DP, Verma CS, Sim AY. R248Q mutation - Beyond p53-DNA binding. Proteins. PMID 26442703 DOI: 10.1002/Prot.24940  0.226
2022 Nicolaou ST, Kannan S, Warwicker J, Verma CS. Activation of p53: how phosphorylated Ser15 triggers sequential phosphorylation of p53 at Thr18 by CK1δ. Proteins. PMID 35752942 DOI: 10.1002/prot.26393  0.226
2016 Wiedmann MM, Tan YS, Wu Y, Aibara S, Xu W, Sore HF, Verma CS, Itzhaki L, Stewart M, Brenton JD, Spring DR. Development of Cell-Permeable, Non-Helical Constrained Peptides to Target a Key Protein-Protein Interaction in Ovarian Cancer. Angewandte Chemie (International Ed. in English). PMID 27918136 DOI: 10.1002/Anie.201609427  0.225
2021 Chia J, Wang SC, Wee S, Gill DJ, Tay F, Kannan S, Verma CS, Gunaratne J, Bard FA. Src activates retrograde membrane traffic through phosphorylation of GBF1. Elife. 10. PMID 34870592 DOI: 10.7554/eLife.68678  0.223
2018 Ramesh K, Lama D, Tan KW, Nguyen VS, Chew FT, Verma CS, Mok YK. Homologous Lympho-Epithelial Kazal-type Inhibitor Domains Delay Blood Coagulation by Inhibiting Factor X and XI with Differential Specificity. Structure (London, England : 1993). PMID 30017565 DOI: 10.1016/j.str.2018.05.018  0.223
2016 Tan YS, Lane DP, Verma CS. Stapled peptide design: principles and roles of computation. Drug Discovery Today. PMID 27326912 DOI: 10.1016/J.Drudis.2016.06.012  0.223
2013 Zou H, Koh J, Li J, Qiu S, Aung TT, Lin H, Lakshminarayanan R, Dai X, Tang C, Lim FH, Zhou L, Tan AL, Verma C, Tan DTH, Chan HSO, et al. Correction to Design and Synthesis of Amphiphilic Xanthone-Based, Membrane-Targeting Antimicrobials with Improved Membrane Selectivity Journal of Medicinal Chemistry. 56: 3747-3747. DOI: 10.1021/Jm400514X  0.22
2005 Verma CS, Fischer S. Protein stability and ligand binding: new paradigms from in-silico experiments. Biophysical Chemistry. 115: 295-302. PMID 15752621 DOI: 10.1016/j.bpc.2004.12.038  0.219
2020 Mehta S, Algie M, Al-Jabry T, McKinney C, Kannan S, Verma CS, Ma W, Zhang J, Bartolec TK, Masamsetti VP, Parker K, Henderson L, Gould ML, Bhatia P, Harfoot R, et al. Critical Role for Cold Shock Protein YB-1 in Cytokinesis. Cancers. 12. PMID 32882852 DOI: 10.3390/Cancers12092473  0.219
2023 Chuah YH, Tay EXY, Grinchuk OV, Yoon J, Feng J, Kannan S, Robert M, Jakhar R, Liang Y, Lee BWL, Wang LC, Lim YT, Zhao T, Sobota RM, Lu G, ... ... Verma CS, et al. CAMK2D serves as a molecular scaffold for RNF8-MAD2 complex to induce mitotic checkpoint in glioma. Cell Death and Differentiation. PMID 37468549 DOI: 10.1038/s41418-023-01192-3  0.219
2016 Lama D, Pradhan MR, Brown CJ, Eapen RS, Joseph TL, Kwoh CK, Lane DP, Verma CS. Water-Bridge Mediates Recognition of mRNA Cap in eIF4E. Structure (London, England : 1993). PMID 27916520 DOI: 10.1016/J.Str.2016.11.006  0.219
2004 Dubbink HJ, Hersmus R, Verma CS, van der Korput HA, Berrevoets CA, van Tol J, Ziel-van der Made AC, Brinkmann AO, Pike AC, Trapman J. Distinct recognition modes of FXXLF and LXXLL motifs by the androgen receptor. Molecular Endocrinology (Baltimore, Md.). 18: 2132-50. PMID 15178743 DOI: 10.1210/me.2003-0375  0.219
2019 Iegre J, Brear P, Baker DJ, Tan YS, Atkinson EL, Sore HF, O' Donovan DH, Verma CS, Hyvönen M, Spring DR. Efficient development of stable and highly functionalised peptides targeting the CK2α/CK2β protein-protein interaction. Chemical Science. 10: 5056-5063. PMID 31183056 DOI: 10.1039/c9sc00798a  0.219
2015 Kannan S, Poulsen A, Yang HY, Ho M, Ang SH, Eldwin TSW, Jeyaraj DA, Chennamaneni LR, Liu B, Hill J, Verma CS, Nacro K. Probing the binding mechanism of Mnk inhibitors by docking and molecular dynamics simulations Biochemistry. 54: 32-46. DOI: 10.1021/bi501261j  0.218
2002 McCarthy AA, Walsh MA, Verma CS, O'Connell DP, Reinhold M, Yalloway GN, D'Arcy D, Higgins TM, Voordouw G, Mayhew SG. Crystallographic investigation of the role of aspartate 95 in the modulation of the redox potentials of Desulfovibrio vulgaris flavodoxin. Biochemistry. 41: 10950-62. PMID 12206666 DOI: 10.1021/Bi020225H  0.217
2010 Fernández-Recio J, Verma C. Theory and simulation: integrating models into experimental scenarios. Current Opinion in Structural Biology. 20: 139-41. PMID 20226653 DOI: 10.1016/J.Sbi.2010.02.002  0.216
2017 Kannan S, Poulsen A, Yang HY, Ho M, Ang SH, Eldwin TSW, Jeyaraj DA, Chennamaneni LR, Liu B, Hill J, Verma CS, Nacro K. Correction to Probing the Binding Mechanism of Mnk Inhibitors by Docking and Molecular Dynamics Simulations. Biochemistry. PMID 29077411 DOI: 10.1021/acs.biochem.7b00996  0.216
2015 Jiang Y, Tan CY, Tan SY, Wong MSF, Chen YF, Zhang L, Yao K, Gan SKE, Verma C, Tan YJ. SAW sensor for Influenza A virus detection enabled with efficient surface functionalization Sensors and Actuators, B: Chemical. 209: 78-84. DOI: 10.1016/J.Snb.2014.11.103  0.216
2019 Charoenpattarapreeda J, Tan YS, Iegre J, Walsh SJ, Fowler E, Eapen RS, Wu Y, Sore HF, Verma CS, Itzhaki L, Spring DR. Targeted covalent inhibitors of MDM2 using electrophile-bearing stapled peptides. Chemical Communications (Cambridge, England). PMID 31225847 DOI: 10.1039/c9cc04022f  0.216
2012 ElSawy KM, Twarock R, Verma CS, Caves LS. Peptide inhibitors of viral assembly: a novel route to broad-spectrum antivirals. Journal of Chemical Information and Modeling. 52: 770-6. PMID 22390317 DOI: 10.1021/ci200467s  0.216
2008 Fernández-Recio J, Verma C. Theory and simulation. Editorial overview. Current Opinion in Structural Biology. 18: 131-3. PMID 18406601 DOI: 10.1016/J.Sbi.2008.03.001  0.215
2005 Sakharkar KR, Sakharkar MK, Verma C, Chow VTK. Comparative study of overlapping genes in bacteria, with special reference to Rickettsia prowazekii and Rickettsia conorii. International Journal of Systematic and Evolutionary Microbiology. 55: 1205-1209. PMID 15879256 DOI: 10.1099/Ijs.0.63446-0  0.215
2017 Wong JH, Alfatah M, Sin MF, Sim HM, Verma CS, Lane DP, Arumugam P. A yeast two-hybrid system for the screening and characterization of small-molecule inhibitors of protein-protein interactions identifies a novel putative Mdm2-binding site in p53. Bmc Biology. 15: 108. PMID 29121928 DOI: 10.1186/S12915-017-0446-7  0.214
2016 Schönbach C, Verma C, Wee LJ, Bond PJ, Ranganathan S. 2016 update on APBioNet's annual international conference on bioinformatics (InCoB). Bmc Genomics. 17: 1036. PMID 28155656 DOI: 10.1186/S12864-016-3362-2  0.213
2020 Ng S, Juang YC, Chandramohan A, Kaan HYK, Sadruddin A, Yuen TY, Ferrer-Gago FJ, Lee XC, Liew X, Johannes CW, Brown CJ, Kannan S, Aronica PG, Berglund NA, Verma CS, et al. De-risking Drug Discovery of Intracellular Targeting Peptides: Screening Strategies to Eliminate False-Positive Hits. Acs Medicinal Chemistry Letters. 11: 1993-2001. PMID 33062184 DOI: 10.1021/Acsmedchemlett.0C00022  0.212
2008 Brown CJ, Srinivasan D, Jun LH, Coomber D, Verma CS, Lane DP. The electrostatic surface of MDM2 modulates the specificity of its interaction with phosphorylated and unphosphorylated p53 peptides. Cell Cycle (Georgetown, Tex.). 7: 608-10. PMID 18256546 DOI: 10.4161/Cc.7.5.5488  0.212
2005 Khalaila I, Allardyce CS, Verma CS, Dyson PJ. A mass spectrometric and molecular modelling study of cisplatin binding to transferrin. Chembiochem : a European Journal of Chemical Biology. 6: 1788-95. PMID 16196027 DOI: 10.1002/cbic.200500067  0.211
2022 Reid LM, Guzzetti I, Svensson T, Carlsson AC, Su W, Leek T, von Sydow L, Czechtizky W, Miljak M, Verma C, De Maria L, Essex JW. How well does molecular simulation reproduce environment-specific conformations of the intrinsically disordered peptides PLP, TP2 and ONEG? Chemical Science. 13: 1957-1971. PMID 35308859 DOI: 10.1039/d1sc03496k  0.211
1996 Pinitglang S, Noble M, Verma C, Thomas EW, Brocklehurst K. Studies on the enhancement of the reactivity of the (Cys-25)-S-/(His159)-Im+H ion-pair of papain by deprotonation across pKa 4. Biochemical Society Transactions. 24. PMID 8879012 DOI: 10.1042/Bst024468S  0.21
2009 Madhumalar A, Jun LH, Lane DP, Verma CS. Dimerization of the core domain of the p53 family: a computational study. Cell Cycle (Georgetown, Tex.). 8: 137-48. PMID 19106606 DOI: 10.4161/Cc.8.1.7530  0.21
2009 Brown CJ, Verma CS, Walkinshaw MD, Lane DP. Crystallization of eIF4E complexed with eIF4GI peptide and glycerol reveals distinct structural differences around the cap-binding site. Cell Cycle (Georgetown, Tex.). 8: 1905-11. PMID 19440045 DOI: 10.4161/Cc.8.12.8742  0.21
2019 Partridge AW, Kaan HYK, Juang YC, Sadruddin A, Lim S, Brown CJ, Ng S, Thean D, Ferrer F, Johannes C, Yuen TY, Kannan S, Aronica P, Tan YS, Pradhan MR, ... Verma CS, et al. Incorporation of Putative Helix-Breaking Amino Acids in the Design of Novel Stapled Peptides: Exploring Biophysical and Cellular Permeability Properties. Molecules (Basel, Switzerland). 24. PMID 31226791 DOI: 10.3390/Molecules24122292  0.209
2018 Kozic M, Fox SJ, Thomas JM, Verma CS, Rigden DJ. Large scale ab initio modelling of structurally uncharacterized antimicrobial peptides reveals known and novel folds. Proteins. PMID 29388242 DOI: 10.1002/prot.25473  0.208
2018 Marzinek JK, Bag N, Huber RG, Holdbrook DA, Wohland T, Verma CS, Bond PJ. A Funneled Conformational Landscape Governs Flavivirus Fusion Peptide Interaction with Lipid Membranes. Journal of Chemical Theory and Computation. PMID 29874075 DOI: 10.1021/Acs.Jctc.8B00438  0.208
2005 De Simone A, Dodson GG, Verma CS, Zagari A, Fraternali F. Prion and water: tight and dynamical hydration sites have a key role in structural stability. Proceedings of the National Academy of Sciences of the United States of America. 102: 7535-40. PMID 15894615 DOI: 10.1073/pnas.0501748102  0.208
2019 Kannan S, Fox SJ, Verma CS. Exploring gatekeeper mutations in EGFR through computer simulations. Journal of Chemical Information and Modeling. PMID 31099565 DOI: 10.1021/acs.jcim.9b00361  0.208
2015 Pradhan MR, Pal A, Hu Z, Kannan S, Kwoh CK, Lane DP, Verma CS. Wetting of non-conserved residue-backbones: A feature indicative of aggregation associated regions of proteins. Proteins. PMID 26677132 DOI: 10.1002/Prot.24976  0.207
2015 ElSawy KM, Lane DP, Verma CS, Caves LS. Recognition Dynamics of p53 and MDM2: Implications for Peptide Design. The Journal of Physical Chemistry. B. PMID 26701330 DOI: 10.1021/Acs.Jpcb.5B11162  0.207
2015 Lama D, Quah ST, Brown CJ, Lane DP, Verma CS. 159 Stapled-peptides targeting the protein-binding interface of eukaryotic Translation Initiation Factor 4E (eIF4E) protein. Journal of Biomolecular Structure & Dynamics. 33: 102-3. PMID 26103369 DOI: 10.1080/07391102.2015.1032796  0.205
2019 Tan YS, Mhoumadi Y, Verma CS. Roles of computational modelling in understanding p53 structure, biology, and its therapeutic targeting. Journal of Molecular Cell Biology. PMID 30726928 DOI: 10.1093/jmcb/mjz009  0.205
2017 Xu W, Lau YH, Fischer G, Tan YS, Chattopadhyay A, de la Roche M, Hyvonen M, Verma CS, Spring DR, Itzhaki LS. Macrocyclized extended peptides: Inhibiting the substrate-recognition domain of tankyrase. Journal of the American Chemical Society. PMID 28084734 DOI: 10.1021/jacs.6b10234  0.205
2021 Ting DSJ, Li J, Verma CS, Goh ETL, Nubile M, Mastropasqua L, Said DG, Beuerman RW, Lakshminarayanan R, Mohammed I, Dua HS. Evaluation of Host Defense Peptide (CaD23)-Antibiotic Interaction and Mechanism of Action: Insights From Experimental and Molecular Dynamics Simulations Studies. Frontiers in Pharmacology. 12: 731499. PMID 34690770 DOI: 10.3389/fphar.2021.731499  0.205
2016 Tiwari G, Verma CS. Probing p53 Activating Stapled-Peptide Interaction with Albumin Using Molecular Docking and Simulation Biophysical Journal. 110: 538a. DOI: 10.1016/j.bpj.2015.11.2880  0.204
2020 Kannan S, Aronica PGA, Ng S, Gek Lian DT, Frosi Y, Chee S, Shimin J, Yuen TY, Sadruddin A, Kaan HYK, Chandramohan A, Wong JH, Tan YS, Chang ZW, Ferrer-Gago FJ, ... ... Verma CS, et al. Macrocyclization of an all-d linear α-helical peptide imparts cellular permeability. Chemical Science. 11: 5577-5591. PMID 32874502 DOI: 10.1039/C9Sc06383H  0.202
2023 Loh JT, Teo JKH, Kannan S, Verma CS, Lim HH, Lam KP. Disrupting the Dok3-Card9 Interaction with Synthetic Peptides Enhances Antifungal Effector Functions of Human Neutrophils. Pharmaceutics. 15. PMID 37513967 DOI: 10.3390/pharmaceutics15071780  0.201
2012 Joseph TL, Lane DP, Verma CS. Stapled BH3 peptides against MCL-1: mechanism and design using atomistic simulations. Plos One. 7: e43985. PMID 22952838 DOI: 10.1371/Journal.Pone.0043985  0.2
2023 Ho TLF, Lee MY, Goh HC, Ng GYN, Lee JJH, Kannan S, Lim YT, Zhao T, Lim EKH, Phua CZJ, Lee YF, Lim RYX, Ng PJH, Yuan J, Chan DKH, ... ... Verma CS, et al. Domain-specific p53 mutants activate EGFR by distinct mechanisms exposing tissue-independent therapeutic vulnerabilities. Nature Communications. 14: 1726. PMID 36977662 DOI: 10.1038/s41467-023-37223-3  0.2
2019 Theng Ong S, Thomas G, Kannan S, Her Z, Rui Ng X, Chew X, Nguyen HM, Wulff H, Verma C, Chen Q, Ahmed M, Chandy KG. Novel Inhibitors of the Calcium-Activated K+ Channel KCa3.1 to Treat Non-Alcoholic Fatty Liver Disease and Liver Fibrosis Biophysical Journal. 116: 249a. DOI: 10.1016/J.Bpj.2018.11.1362  0.199
2019 Lama D, Verma CS. Deciphering the mechanistic effects of eIF4E phosphorylation on mRNA-cap recognition. Protein Science : a Publication of the Protein Society. PMID 31811670 DOI: 10.1002/pro.3798  0.198
2015 Lua WH, Gan SK, Lane DP, Verma CS. A search for synergy in the binding kinetics of Trastuzumab and Pertuzumab whole and F(ab) to Her2. Npj Breast Cancer. 1: 15012. PMID 28721368 DOI: 10.1038/npjbcancer.2015.12  0.198
2011 Hussain S, Khan A, Gul S, Resmini M, Verma CS, Thomas EW, Brocklehurst K. Identification of interactions involved in the generation of nucleophilic reactivity and of catalytic competence in the catalytic site Cys/His ion pair of papain. Biochemistry. 50: 10732-42. PMID 22044167 DOI: 10.1021/Bi201207Z  0.198
2024 Jayakody T, Inoue A, Kannan S, Nakamura G, Kawakami K, Mendis K, Nguyen TB, Li J, Herr DR, Verma CS, Dawe GS. Mechanisms of biased agonism by Gα-biased stapled peptide agonists of the relaxin-3 receptor. Science Signaling. 17: eabl5880. PMID 38349968 DOI: 10.1126/scisignal.abl5880  0.197
2019 Reid LM, Verma CS, Essex JW. The role of molecular simulations in understanding the mechanisms of cell-penetrating peptides. Drug Discovery Today. PMID 31229665 DOI: 10.1016/J.Drudis.2019.06.013  0.196
2020 Kong LR, Mohamed Salleh NAB, Ong RW, Tan TZ, Syn NL, Goh RM, Fhu CW, Tan DSW, Iyer NG, Kannan S, Verma CS, Lim YC, Soo R, Ho J, Huang Y, et al. A common MET polymorphism harnesses HER2 signaling to drive aggressive squamous cell carcinoma. Nature Communications. 11: 1556. PMID 32214092 DOI: 10.1038/S41467-020-15318-5  0.196
2008 Dodson GG, Lane DP, Verma CS. Molecular simulations of protein dynamics: new windows on mechanisms in biology. Embo Reports. 9: 144-50. PMID 18246106 DOI: 10.1038/Sj.Embor.7401160  0.195
2024 Li J, Tan YS, Verma CS. Dissecting the geometric and hydrophobic constraints of stapled peptides. Proteins. PMID 38196284 DOI: 10.1002/prot.26662  0.195
2016 Schönbach C, Verma C, Bond PJ, Ranganathan S. Bioinformatics and systems biology research update from the 15(th) International Conference on Bioinformatics (InCoB2016). Bmc Bioinformatics. 17: 524. PMID 28155668 DOI: 10.1186/S12859-016-1409-7  0.194
2020 Brown CJ, Verma CS, Lane DP, Lama D. Conformational ordering of intrinsically disordered peptides for targeting translation initiation. Biochimica Et Biophysica Acta. General Subjects. 1865: 129775. PMID 33122085 DOI: 10.1016/j.bbagen.2020.129775  0.193
2021 Lim J, Kumar A, Low K, Verma CS, Mu Y, Miserez A, Pervushin K. Liquid-Liquid Phase Separation of Short Histidine- and Tyrosine-Rich Peptides: Sequence Specificity and Molecular Topology. The Journal of Physical Chemistry. B. PMID 34106723 DOI: 10.1021/acs.jpcb.0c11476  0.19
2021 Sana B, Ho T, Kannan S, Ke D, Li E, Seayad J, Verma C, Duong H, Ghadessy F. Engineered RebH halogenase variants demonstrating a specificity switch from tryptophan towards novel indole compounds. Chembiochem : a European Journal of Chemical Biology. PMID 34240527 DOI: 10.1002/cbic.202100210  0.19
2018 Fox SJ, Lakshminarayanan R, Beuerman RW, Li J, Verma CS. Conformational Transitions of Melittin between Aqueous and Lipid Phases: Comparison of Simulations with Experiments. The Journal of Physical Chemistry. B. PMID 30114909 DOI: 10.1021/acs.jpcb.8b06781  0.188
2017 Landré V, Revi B, Mir MG, Verma C, Hupp TR, Gilbert N, Ball KL. Regulation of transcriptional activators by DNA-binding domain ubiquitination. Cell Death and Differentiation. PMID 28362432 DOI: 10.1038/Cdd.2017.42  0.188
2018 Liu BH, Jobichen C, Chia CSB, Chan THM, Tang JP, Chung TXY, Li J, Poulsen A, Hung AW, Koh-Stenta X, Tan YS, Verma CS, Tan HK, Wu CS, Li F, et al. Targeting cancer addiction for SALL4 by shifting its transcriptome with a pharmacologic peptide. Proceedings of the National Academy of Sciences of the United States of America. PMID 29976840 DOI: 10.1073/pnas.1801253115  0.188
2016 Verma C, Bond P. Introductory note for JBCB special issue. Journal of Bioinformatics and Computational Biology. 1602005. PMID 28033736 DOI: 10.1142/S0219720016020054  0.186
2017 Hui EY, Rout B, Tan YS, Verma CS, Chan KP, Johannes CW. An intramolecular tryptophan-condensation approach for peptide stapling. Organic & Biomolecular Chemistry. PMID 29271460 DOI: 10.1039/c7ob02667f  0.185
2009 Brown CJ, Lain S, Verma CS, Fersht AR, Lane DP. Awakening guardian angels: drugging the p53 pathway. Nature Reviews. Cancer. 9: 862-73. PMID 19935675 DOI: 10.1038/Nrc2763  0.184
2017 Li J, Koh JJ, Liu S, Lakshminarayanan R, Verma CS, Beuerman RW. Membrane Active Antimicrobial Peptides: Translating Mechanistic Insights to Design. Frontiers in Neuroscience. 11: 73. PMID 28261050 DOI: 10.3389/fnins.2017.00073  0.184
2014 Lakshminarayanan R, Liu S, Li J, Nandhakumar M, Aung TT, Goh E, Chang JYT, Saraswathi P, Tang C, Safie SRB, Lin LY, Riezman H, Lei Z, Verma CS, Beuerman RW. Synthetic multivalent antifungal peptides effective against fungi Plos One. 9. PMID 24498363 DOI: 10.1371/Journal.Pone.0087730  0.183
2019 Yuen TY, Brown CJ, Xue Y, Tan YS, Ferrer Gago FJ, Lee XE, Neo JY, Thean D, Kaan HYK, Partridge AW, Verma CS, Lane DP, Johannes CW. Stereoisomerism of stapled peptide inhibitors of the p53-Mdm2 interaction: an assessment of synthetic strategies and activity profiles. Chemical Science. 10: 6457-6466. PMID 31316744 DOI: 10.1039/C9Sc01456J  0.183
2015 Sangith N, Srinivasaraghavan K, Sahu I, Desai A, Medipally S, Somavarappu AK, Verma C, Venkatraman P. Corrigendum to "Discovery of novel interacting partners of PSMD9, a proteasomal chaperone: Role of an Atypical and versatile PDZ-domain motif interaction and identification of putative functional modules" [FEBS Open Bio 4 (2014) 571-583] Febs Open Bio. DOI: 10.1016/j.fob.2015.06.010  0.181
2011 Brown CJ, Cheok CF, Verma CS, Lane DP. Reactivation of p53: from peptides to small molecules. Trends in Pharmacological Sciences. 32: 53-62. PMID 21145600 DOI: 10.1016/J.Tips.2010.11.004  0.18
2016 Coffill CR, Lee AP, Siau JW, Chee SM, Joseph TL, Tan YS, Madhumalar A, Tay BH, Brenner S, Verma CS, Ghadessy FJ, Venkatesh B, Lane DP. The p53-Mdm2 interaction and the E3 ligase activity of Mdm2/Mdm4 are conserved from lampreys to humans. Genes & Development. PMID 26798135 DOI: 10.1101/Gad.274118.115  0.179
2024 Shivgan AT, Marzinek JK, Krah A, Matsudaira P, Verma CS, Bond PJ. Coarse-Grained Model of Glycosaminoglycans for Biomolecular Simulations. Journal of Chemical Theory and Computation. PMID 38358378 DOI: 10.1021/acs.jctc.3c01088  0.179
2023 Kasper SH, Otten S, Squadroni B, Orr-Terry C, Kuang Y, Mussallem L, Ge L, Yan L, Kannan S, Verma CS, Brown CJ, Johannes CW, Lane DP, Chandramohan A, Partridge AW, et al. A high-throughput microfluidic mechanoporation platform to enable intracellular delivery of cyclic peptides in cell-based assays. Bioengineering & Translational Medicine. 8: e10542. PMID 37693049 DOI: 10.1002/btm2.10542  0.179
2014 Khoo KH, Hoe KK, Verma CS, Lane DP. Drugging the p53 pathway: understanding the route to clinical efficacy. Nature Reviews. Drug Discovery. 13: 217-36. PMID 24577402 DOI: 10.1038/Nrd4236  0.179
2021 Xu W, Kannan S, Verma CS, Nacro K. Update on the Development of MNK Inhibitors as Therapeutic Agents. Journal of Medicinal Chemistry. PMID 34533957 DOI: 10.1021/acs.jmedchem.1c00368  0.178
2017 Su CT, Kwoh CK, Verma CS, Gan SK. Modeling the full length HIV-1 Gag polyprotein reveals the role of its p6 subunit in viral maturation and the effect of non-cleavage site mutations in protease drug resistance. Journal of Biomolecular Structure & Dynamics. 1-40. PMID 29237328 DOI: 10.1080/07391102.2017.1417160  0.178
2020 Wu C, Kannan S, Verma CS, Swaminathan K, Wong SM. Molecular modeling and interaction between Arabidopsis sulfite oxidase and the GW motif of Turnip crinkle virus coat protein. Virology. 551: 64-74. PMID 33038689 DOI: 10.1016/j.virol.2020.08.013  0.177
2021 Aronica PGA, Reid LM, Desai N, Li J, Fox SJ, Yadahalli S, Essex JW, Verma CS. Computational Methods and Tools in Antimicrobial Peptide Research. Journal of Chemical Information and Modeling. PMID 34165973 DOI: 10.1021/acs.jcim.1c00175  0.177
2018 Marzinek JK, Huber RG, Holdbrook D, Boon PL, Sim AY, Martins AS, Saw WG, Martins IC, Anand GS, Grüber G, Lok S, Wohland T, Wan Y, Verma C, Bond PJ. Virtual Dengue Virus: The INS and OUTS Biophysical Journal. 114: 208a. DOI: 10.1016/J.Bpj.2017.11.1163  0.176
2016 Fox SJ, Fazil MH, Dhand C, Venkatesh M, Goh ET, Harini S, Eugene C, Lim RR, Ramakrishna S, Chaurasia SS, Beuerman RW, Verma CS, Verma NK, Loh XJ, Lakshminarayanan R. Insight into membrane selectivity of linear and branched polyethylenimines and their potential as biocides for advanced wound dressings. Acta Biomaterialia. PMID 27079762 DOI: 10.1016/j.actbio.2016.04.015  0.175
2020 Kong LR, Ong RW, Tan TZ, Mohamed Salleh NAB, Thangavelu M, Chan JV, Koh LYJ, Periyasamy G, Lau JA, Le TBU, Wang L, Lee M, Kannan S, Verma CS, Lim CM, et al. Targeting codon 158 p53-mutant cancers via the induction of p53 acetylation. Nature Communications. 11: 2086. PMID 32350249 DOI: 10.1038/S41467-020-15608-Y  0.174
2020 Cocco E, Lee JE, Kannan S, Schram AM, Won HH, Shifman S, Kulick A, Baldino L, Toska E, Arruabarrena-Aristorena A, Kittane S, Wu F, Cai Y, Arena S, Mussolin B, ... ... Verma CS, et al. TRK xDFG mutations trigger a sensitivity switch from type I to II kinase inhibitors. Cancer Discovery. PMID 33004339 DOI: 10.1158/2159-8290.CD-20-0571  0.173
2013 Brown CJ, Quah ST, Jong J, Goh AM, Chiam PC, Khoo KH, Choong ML, Lee MA, Yurlova L, Zolghadr K, Joseph TL, Verma CS, Lane DP. Stapled peptides with improved potency and specificity that activate p53. Acs Chemical Biology. 8: 506-12. PMID 23214419 DOI: 10.1021/Cb3005148  0.172
2011 Brown CJ, Lim JJ, Leonard T, Lim HC, Chia CS, Verma CS, Lane DP. Stabilizing the eIF4G1 α-helix increases its binding affinity with eIF4E: implications for peptidomimetic design strategies. Journal of Molecular Biology. 405: 736-53. PMID 21094167 DOI: 10.1016/J.Jmb.2010.10.045  0.171
2017 Lua WH, Ling WL, Su CT, Yeo JY, Verma CS, Eisenhaber B, Eisenhaber F, Gan SK. Discovery of a novel splice variant of Fcar (CD89) unravels sequence segments necessary for efficient secretion: a story of bad signal peptides and good ones that nevertheless do not make it. Cell Cycle (Georgetown, Tex.). 0. PMID 28103138 DOI: 10.1080/15384101.2017.1281480  0.17
2006 Leonard PM, Brzozowski AM, Lebedev A, Marshall CM, Smith DJ, Verma CS, Walton NJ, Grogan G. The 1.8 A resolution structure of hydroxycinnamoyl-coenzyme A hydratase-lyase (HCHL) from Pseudomonas fluorescens, an enzyme that catalyses the transformation of feruloyl-coenzyme A to vanillin. Acta Crystallographica. Section D, Biological Crystallography. 62: 1494-501. PMID 17139085 DOI: 10.1107/S0907444906039199  0.169
2004 Prabhakaran M, Gursahani SH, Verma CS, Garduno-Juarez R, Renugopalakrishnan V. Cytochrome c: The effect of temperature and pressure from molecular dynamics simulations Journal of Physics and Chemistry of Solids. 65: 1615-1622. DOI: 10.1016/j.jpcs.2003.10.079  0.168
2002 Smith JC, Merzel F, Verma CS, Fischer S. Protein hydration water: Structure and thermodynamics Journal of Molecular Liquids. 101: 27-33. DOI: 10.1016/S0167-7322(02)00100-9  0.166
2020 Ladds MJGW, Popova G, Pastor-Fernández A, Kannan S, van Leeuwen IMM, Håkansson M, Walse B, Tholander F, Bhatia R, Verma CS, Lane DP, Laín S. Exploitation of dihydroorotate dehydrogenase (DHODH) and p53 activation as therapeutic targets: A case study in polypharmacology. The Journal of Biological Chemistry. 295: 17935-17949. PMID 33453808 DOI: 10.1074/jbc.RA119.012056  0.165
2015 Verma C, R K S, Singh RB, Mishra S. Biochemical and In-silico Studies on Pectin Methylesterase from G9 Variety of Musa acuminata for Delayed Ripening. The Open Biochemistry Journal. 9: 15-23. PMID 25926894 DOI: 10.2174/1874091X01509010015  0.165
2020 Ladds MJGW, Popova G, Pastor-Fernández A, Kannan S, van Leeuwen IMM, Håkansson M, Walse B, Tholander F, Bhatia R, Verma CS, Lane DP, Laín S. Exploitation of DHODH and p53 activation as therapeutic targets - a case study in polypharmacology. The Journal of Biological Chemistry. PMID 32900849 DOI: 10.1074/Jbc.Ra119.012056  0.164
2018 Kannan S, Tan DS, Verma CS. Effects of Single Nucleotide Polymorphisms on the binding of afatinib to EGFR: a potential patient stratification factor revealed by modelling studies. Journal of Chemical Information and Modeling. PMID 30481018 DOI: 10.1021/acs.jcim.8b00491  0.164
2023 Tang Z, Jiang W, Li S, Huang X, Yang Y, Chen X, Qiu J, Xiao C, Xie Y, Zhang X, Li J, Verma CS, He Y, Yang A. Design and evaluation of tadpole-like conformational antimicrobial peptides. Communications Biology. 6: 1177. PMID 37980400 DOI: 10.1038/s42003-023-05560-0  0.162
2023 Lane DP, Verma CS. Covalent Rescue of Mutant p53. Cancer Discovery. 13: 14-16. PMID 36620883 DOI: 10.1158/2159-8290.CD-22-1212  0.162
2016 Lakshminarayanan R, Tan WX, Aung TT, Goh ET, Muruganantham N, Li J, Chang JY, Dikshit N, Saraswathi P, Lim RR, Kang TS, Balamuralidhar V, Sukumaran B, Verma CS, Sivaraman J, et al. Branched Peptide, B2088, Disrupts the Supramolecular Organization of Lipopolysaccharides and Sensitizes the Gram-negative Bacteria. Scientific Reports. 6: 25905. PMID 27174567 DOI: 10.1038/srep25905  0.16
1998 Fischer S, Verma CS, Hubbard RE. Rotation of Structural Water inside a Protein:  Calculation of the Rate and Vibrational Entropy of Activation The Journal of Physical Chemistry B. 102: 1797-1805. DOI: 10.1021/Jp972948U  0.159
2020 Malik AJ, Aronica PGA, Verma CS. DStabilize: A Web Resource to Generate Mirror Images of Biomolecules. Structure (London, England : 1993). PMID 32783952 DOI: 10.1016/j.str.2020.07.014  0.159
2023 Malik AJ, Langer D, Verma CS, Poole AM, Allison JR. Structome: a tool for the rapid assembly of datasets for structural phylogenetics. Bioinformatics Advances. 3: vbad134. PMID 38046099 DOI: 10.1093/bioadv/vbad134  0.158
2019 Nguyen MN, Verma CS, Zhong P. AppA: a web server for analysis, comparison, and visualization of contact residues and interfacial waters of antibody-antigen structures and models. Nucleic Acids Research. PMID 31069385 DOI: 10.1093/nar/gkz358  0.156
2020 Li J, Beuerman R, Verma CS. Mechanism of polyamine induced colistin resistance through electrostatic networks on bacterial outer membranes. Biochimica Et Biophysica Acta. Biomembranes. 183297. PMID 32339485 DOI: 10.1016/j.bbamem.2020.183297  0.155
2011 Cheok CF, Verma CS, Baselga J, Lane DP. Translating p53 into the clinic. Nature Reviews. Clinical Oncology. 8: 25-37. PMID 20975744 DOI: 10.1038/Nrclinonc.2010.174  0.152
2005 Khalaila I, Allardyce CS, Verma CS, Dyson PJ. Cover Picture: A Mass Spectrometric and Molecular Modelling Study of Cisplatin Binding to Transferrin (ChemBioChem 10/2005) Chembiochem. 6: 1709-1709. DOI: 10.1002/cbic.200590032  0.152
2021 Nicolaou ST, Hebditch M, Jonathan OJ, Verma CS, Warwicker J. PhosIDP: a web tool to visualize the location of phosphorylation sites in disordered regions. Scientific Reports. 11: 9930. PMID 33976270 DOI: 10.1038/s41598-021-88992-0  0.152
2014 Sim AYL, Joseph T, Lane DP, Verma C. Mechanism of stapled peptide binding to MDM2: Possible consequences for peptide design Journal of Chemical Theory and Computation. 10: 1753-1761. DOI: 10.1021/ct4009238  0.151
2001 Fischer S, Smith JC, Verma CS. Dissecting the Vibrational Entropy Change on Protein/Ligand Binding:  Burial of a Water Molecule in Bovine Pancreatic Trypsin Inhibitor The Journal of Physical Chemistry B. 105: 8050-8055. DOI: 10.1021/Jp0120920  0.151
2021 Nguyen TB, Lane DP, Verma CS. Can Glycosylation Mask the Detection of MHC Expressing p53 Peptides by T Cell Receptors? Biomolecules. 11. PMID 34356680 DOI: 10.3390/biom11071056  0.15
2016 Castel P, Ellis H, Bago R, Toska E, Razavi P, Carmona FJ, Kannan S, Verma CS, Dickler M, Chandarlapaty S, Brogi E, Alessi DR, Baselga J, Scaltriti M. PDK1-SGK1 Signaling Sustains AKT-Independent mTORC1 Activation and Confers Resistance to PI3Kα Inhibition. Cancer Cell. PMID 27451907 DOI: 10.1016/J.Ccell.2016.06.004  0.149
2024 Chandramohan A, Josien H, Yuen TY, Duggal R, Spiegelberg D, Yan L, Juang YA, Ge L, Aronica PG, Kaan HYK, Lim YH, Peier A, Sherborne B, Hochman J, Lin S, ... ... Verma CS, et al. Design-rules for stapled peptides with in vivo activity and their application to Mdm2/X antagonists. Nature Communications. 15: 489. PMID 38216578 DOI: 10.1038/s41467-023-43346-4  0.145
2018 Yang HY, Chennamaneni LR, Ho MWT, Ang SH, Tan ESW, Jeyaraj DA, Yeap YS, Liu B, Ong EH, Joy JK, Wee JLK, Kwek P, Retna P, Dinie N, Nguyen TTH, ... ... Verma CS, et al. Optimization of Selective Mitogen-activated Protein Kinase Interacting Kinases 1 and 2 (MNK1/2) Inhibitors for the treatment of Blast Crisis Leukemia. Journal of Medicinal Chemistry. PMID 29683667 DOI: 10.1021/acs.jmedchem.7b01714  0.145
2008 Gul S, Hussain S, Thomas MP, Resmini M, Verma CS, Thomas EW, Brocklehurst K. Generation of nucleophilic character in the Cys25/His159 ion pair of papain involves Trp177 but not Asp158. Biochemistry. 47: 2025-35. PMID 18225918 DOI: 10.1021/bi702126p  0.144
2023 Tabanifar B, Moorthy A, Tsai HH, Kannan S, Verma CS, Sabapathy K. JNK mediates cell death by promoting the ubiquitination of the apurinic/apyrimidinic endonuclease APE1. Cell Reports. 42: 113123. PMID 37703179 DOI: 10.1016/j.celrep.2023.113123  0.143
2018 Li J, Beuerman RW, Verma CS. Molecular Insights into the Membrane Affinities of Model Hydrophobes. Acs Omega. 3: 2498-2507. PMID 30023836 DOI: 10.1021/acsomega.7b01759  0.141
2018 Wirawan M, Fibriansah G, Marzinek JK, Lim XX, Ng TS, Sim AYL, Zhang Q, Kostyuchenko VA, Shi J, Smith SA, Verma CS, Anand G, Crowe JE, Bond PJ, Lok SM. Mechanism of Enhanced Immature Dengue Virus Attachment to Endosomal Membrane Induced by prM Antibody. Structure (London, England : 1993). PMID 30471923 DOI: 10.1016/j.str.2018.10.009  0.141
2019 Lim XN, Shan C, Marzinek JK, Dong H, Ng TS, Ooi JSG, Fibriansah G, Wang J, Verma CS, Bond PJ, Shi PY, Lok SM. Molecular basis of dengue virus serotype 2 morphological switch from 29°C to 37°C. Plos Pathogens. 15: e1007996. PMID 31536610 DOI: 10.1371/journal.ppat.1007996  0.141
2020 Arruabarrena-Aristorena A, Maag JLV, Kittane S, Cai Y, Karthaus WR, Ladewig E, Park J, Kannan S, Ferrando L, Cocco E, Ho SY, Tan DS, Sallaku M, Wu F, Acevedo B, ... ... Verma CS, et al. FOXA1 Mutations Reveal Distinct Chromatin Profiles and Influence Therapeutic Response in Breast Cancer. Cancer Cell. PMID 32888433 DOI: 10.1016/J.Ccell.2020.08.003  0.14
2020 Mehta S, McKinney C, Algie M, Verma CS, Kannan S, Harfoot R, Bartolec TK, Bhatia P, Fisher AJ, Gould ML, Parker K, Cesare AJ, Cunliffe HE, Cohen SB, Kleffmann T, et al. Dephosphorylation of YB-1 is Required for Nuclear Localisation During G Phase of the Cell Cycle. Cancers. 12. PMID 32013098 DOI: 10.3390/Cancers12020315  0.138
2023 Si Z, Li J, Ruan L, Reghu S, Ooi YJ, Li P, Zhu Y, Hammond PT, Verma CS, Bazan GC, Pethe K, Chan-Park MB. Designer co-beta-peptide copolymer selectively targets resistant and biofilm Gram-negative bacteria. Biomaterials. 294: 122004. PMID 36669302 DOI: 10.1016/j.biomaterials.2023.122004  0.138
2014 Lockett S, Verma C, Brafman A, Gudla P, Nandy K, Mimaki Y, Fuchs PL, Jaja J, Reilly KM, Beutler J, Turbyville TJ. Quantitative analysis of F-actin redistribution in astrocytoma cells treated with candidate pharmaceuticals. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. 85: 512-21. PMID 24515854 DOI: 10.1002/Cyto.A.22442  0.138
2022 Li J, Kannan S, Aronica P, Brown CJ, Partridge AW, Verma CS. Molecular descriptors suggest stapling as a strategy for optimizing membrane permeability of cyclic peptides. The Journal of Chemical Physics. 156: 065101. PMID 35168356 DOI: 10.1063/5.0078025  0.137
2010 Dey A, Lane DP, Verma CS. Modulating the p53 pathway. Seminars in Cancer Biology. 20: 3-9. PMID 20193765 DOI: 10.1016/J.Semcancer.2010.02.004  0.136
2019 Sim WJ, Iyengar PV, Lama D, Lui SKL, Ng HC, Haviv-Shapira L, Domany E, Kappei D, Tan TZ, Saie A, Jaynes PW, Verma CS, Kumar AP, Rouanne M, Ha HK, et al. c-Met activation leads to the establishment of a TGFβ-receptor regulatory network in bladder cancer progression. Nature Communications. 10: 4349. PMID 31554791 DOI: 10.1038/S41467-019-12241-2  0.135
2007 Somani S, Chng CP, Verma CS. Hydration of a hydrophobic cavity and its functional role: a simulation study of human interleukin-1beta. Proteins. 67: 868-85. PMID 17380484 DOI: 10.1002/Prot.21320  0.134
2019 Kannan S, Aronica PGA, Tan YS, Verma CS. Inhibiting S100B(ββ) for Activating Wild-Type p53: Design of Stapled Peptides Acs Omega. 4: 5335-5344. DOI: 10.1021/ACSOMEGA.9B00097  0.133
2020 Li J, Beuerman R, Verma CS. Dissecting the Molecular Mechanism of Colistin Resistance in -1 Bacteria. Journal of Chemical Information and Modeling. PMID 33017152 DOI: 10.1021/acs.jcim.0c01051  0.132
2000 Dvorsky R, Sevcik J, Caves LSD, Hubbard RE, Verma CS. Temperature Effects on Protein Motions:  A Molecular Dynamics Study of RNase-Sa The Journal of Physical Chemistry B. 104: 10387-10397. DOI: 10.1021/jp001933k  0.131
2023 Loh JT, Teo JKH, Kannan S, Verma CS, Andiappan AK, Lim HH, Lam KP. DOK3 promotes atopic dermatitis by enabling the phosphatase PP4C to inhibit the T cell signaling mediator CARD11. Science Signaling. 16: eadg5171. PMID 37906628 DOI: 10.1126/scisignal.adg5171  0.131
2004 Whittingham JL, Jonassen I, Havelund S, Roberts SM, Dodson EJ, Verma CS, Wilkinson AJ, Dodson GG. Crystallographic and solution studies of N-lithocholyl insulin: a new generation of prolonged-acting human insulins. Biochemistry. 43: 5987-95. PMID 15147182 DOI: 10.1021/bi036163s  0.13
2011 Lane DP, Brown CJ, Verma C, Cheok CF. New insights into p53 based therapy. Discovery Medicine. 12: 107-17. PMID 21878188  0.13
2017 Chaudhary A, Verma C, Tomar V, Singh HS. Procamallanus spiculogubernaculus Agarwal, 1958 (Nematoda: Camallanidae) from Stinging catfish, Heteropneustes fossilis in India: morphological characterization and molecular data Helminthologia. 54: 68-76. DOI: 10.1515/helm-2017-0010  0.128
2024 Tang Z, Feng J, Challa M, Rowthu SR, Xiong S, Zou C, Li J, Verma CS, Peng H, He X, Huang C, He Y. Discovery of novel Thymol-TPP antibiotics that eradicate MRSA persisters. European Journal of Medicinal Chemistry. 270: 116381. PMID 38604097 DOI: 10.1016/j.ejmech.2024.116381  0.123
2017 Ng CY, Kannan S, Chen YJ, Tan FCK, Ong WY, Go ML, Verma CS, Low CM, Lam Y. A New Generation of Arachidonic Acid Analogues as Potential Neurological Agent Targeting Cytosolic Phospholipase A2. Scientific Reports. 7: 13683. PMID 29057981 DOI: 10.1038/s41598-017-13996-8  0.121
2017 Lin S, Koh JJ, Aung TT, Lim F, Li J, Zou H, Wang L, Lakshminarayanan R, Verma CS, Wang Y, Tan DT, Cao D, Beuerman RW, Ren L, Liu S. Symmetrically Substituted Xanthone Amphiphiles Combat Gram-positive Bacterial Resistance with Enhanced Membrane Selectivity. Journal of Medicinal Chemistry. PMID 28122182 DOI: 10.1021/acs.jmedchem.6b01403  0.121
2003 Hussain S, Pinitglang S, Bailey TS, Reid JD, Noble MA, Resmini M, Thomas EW, Greaves RB, Verma CS, Brocklehurst K. Variation in the pH-dependent pre-steady-state and steady-state kinetic characteristics of cysteine-proteinase mechanism: evidence for electrostatic modulation of catalytic-site function by the neighbouring carboxylate anion. The Biochemical Journal. 372: 735-46. PMID 12643810 DOI: 10.1042/BJ20030177  0.12
2024 Felice D, Alaimo A, Bressan D, Genovesi S, Marmocchi E, Annesi N, Beccaceci G, Dalfovo D, Cutrupi F, Foletto V, Lorenzoni M, Gandolfi F, Kannan S, Verma CS, Vasciaveo A, et al. Rarγ -Foxa1 signaling promotes luminal identity in prostate progenitors and is disrupted in prostate cancer. Biorxiv : the Preprint Server For Biology. PMID 38496627 DOI: 10.1101/2024.03.06.583256  0.12
2022 Palafox M, Monserrat L, Bellet M, Villacampa G, Gonzalez-Perez A, Oliveira M, Brasó-Maristany F, Ibrahimi N, Kannan S, Mina L, Herrera-Abreu MT, Òdena A, Sánchez-Guixé M, Capelán M, Azaro A, ... ... Verma CS, et al. High p16 expression and heterozygous RB1 loss are biomarkers for CDK4/6 inhibitor resistance in ER breast cancer. Nature Communications. 13: 5258. PMID 36071033 DOI: 10.1038/s41467-022-32828-6  0.119
2018 Aronica PGA, Fox SJ, Verma CS. Comparison of Charge Derivation Methods Applied to Amino Acid Parameterization. Acs Omega. 3: 4664-4673. PMID 31458687 DOI: 10.1021/acsomega.8b00438  0.117
2021 Low BSJ, Lim CS, Ding SSL, Tan YS, Ng NHJ, Krishnan VG, Ang SF, Neo CWY, Verma CS, Hoon S, Lim SC, Tai ES, Teo AKK. Decreased GLUT2 and glucose uptake contribute to insulin secretion defects in MODY3/HNF1A hiPSC-derived mutant β cells. Nature Communications. 12: 3133. PMID 34035238 DOI: 10.1038/s41467-021-22843-4  0.117
2006 Vijayakrishnan S, Qamra R, Verma CS, Sen R, Mande SC. Cation-mediated interplay of loops in chaperonin-10. Journal of Biomolecular Structure & Dynamics. 23: 365-76. PMID 16363873 DOI: 10.1080/07391102.2006.10531232  0.114
2019 Choi D, Sonkaria S, Fox SJ, Poudel S, Kim SY, Kang S, Kim S, Verma C, Ahn SH, Lee CS, Khare V. Quantum scale biomimicry of low dimensional growth: An unusual complex amorphous precursor route to TiO band confinement by shape adaptive biopolymer-like flexibility for energy applications. Scientific Reports. 9: 18721. PMID 31822722 DOI: 10.1038/s41598-019-55103-z  0.11
2019 AMIRRUDDIN NS, TAN YS, VERMA CS, GARDNER D, BEE YM, HOON S, TEO A. 1784-P: Studying the Impact of Heterozygous Human INS Gene Mutation on Pancreatic ß Cell Diabetes. 68: 1784-P. DOI: 10.2337/Db19-1784-P  0.109
2021 Holdbrook DA, Marzinek JK, Boncel S, Boags A, Tan YS, Huber RG, Verma CS, Bond PJ. The nanotube express: Delivering a stapled peptide to the cell surface. Journal of Colloid and Interface Science. 604: 670-679. PMID 34280765 DOI: 10.1016/j.jcis.2021.07.023  0.105
2015 Sim AYL, Verma C. How does a hydrocarbon staple affect peptide hydrophobicity? Journal of Computational Chemistry. 36: 773-784. DOI: 10.1002/jcc.23859  0.104
2019 Pal A, Neo K, Rajamani L, Ferrer FJ, Lane DP, Verma CS, Mortellaro A. Inhibition of NLRP3 inflammasome activation by cell-permeable stapled peptides. Scientific Reports. 9: 4913. PMID 30894604 DOI: 10.1038/S41598-019-41211-3  0.101
2024 Siau JW, Siddiqui AA, Lau SY, Kannan S, Peter S, Zeng Y, Verma C, Droge P, Ghadessy JF. Expanding the DNA editing toolbox: Novel lambda integrase variants targeting microalgal and human genome sequences. Plos One. 19: e0292479. PMID 38349923 DOI: 10.1371/journal.pone.0292479  0.1
2015 Goswami U, Chaudhary A, Verma C, Singh HS. First Molecular Characterization of Aspiculuris tetraptera (Nematoda: Heteroxynematidae) from Mus musculus (Rodentia: Muridae) in India. Acta Parasitologica / Witold StefańSki Institute of Parasitology, Warszawa, Poland. 60: 553-6. PMID 26204196 DOI: 10.1515/ap-2015-0079  0.098
2022 Iyengar PV, Marvin DL, Lama D, Tan TZ, Suriyamurthy S, Xie F, van Dinther M, Mei H, Verma CS, Zhang L, Ritsma L, Ten Dijke P. TRAF4 inhibits bladder cancer progression by promoting BMP/SMAD signalling. Molecular Cancer Research : McR. PMID 35731212 DOI: 10.1158/1541-7786.MCR-20-1029  0.097
2012 Verma C, Chaudhary A, Singh HS. PCR-based molecular characterization, phylogenetic analysis and secondary structure of the 28S rDNA of Thaparocleidus wallagonius (Monogenea: Dactylogyridae) - the most primitive species of this genus from India. Bioinformation. 8: 816-9. PMID 23139591 DOI: 10.6026/97320630008816  0.096
2002 Dvorsky R, Hornak V, Sevcik J, Tyrrell GP, Caves LSD, Verma CS. Dynamics of RnaseSa:  A Simulation Perspective Complementary to NMR/X-ray The Journal of Physical Chemistry B. 106: 6038-6048. DOI: 10.1021/jp0133337  0.096
1993 Xiao B, Verma C, Dodson GG. Molecular simulation of human insulin-like growth factor 1 Acta Crystallographica Section a Foundations of Crystallography. 49: c150-c150. DOI: 10.1107/S0108767378095719  0.094
2015 Goswami U, Chaudhary A, Verma C, Singh HS. First Molecular Characterization of Aspiculuris tetraptera (Nematoda: Heteroxynematidae) from Mus musculus (Rodentia: Muridae) in India Acta Parasitologica. 60: 553-556. DOI: 10.1515/ap-2015-0079  0.089
2010 Lane DP, Verma C, Fang CC. The p53 inducing drug dosage may determine quiescence or senescence. Aging. 2: 748. PMID 21068468  0.088
2014 Kumar A, Chaudhary A, Verma C, Singh HS. Molecular characterization of Gastrothylax crumenifer (Platyhelminthes: Gastrothylacidae) from goats in the western part of India by LSU of nuclear ribosomal DNA. The Korean Journal of Parasitology. 52: 701-5. PMID 25548426 DOI: 10.3347/kjp.2014.52.6.701  0.087
2014 Nguyen PV, Verma CS, Gan SK. DNAApp: a mobile application for sequencing data analysis. Bioinformatics (Oxford, England). 30: 3270-1. PMID 25095882 DOI: 10.1093/bioinformatics/btu525  0.087
2003 Whittingham JL, Turkenburg JP, Verma CS, Walsh MA, Grogan G. The 2-A crystal structure of 6-oxo camphor hydrolase. New structural diversity in the crotonase superfamily. The Journal of Biological Chemistry. 278: 1744-50. PMID 12421807 DOI: 10.1074/jbc.M211188200  0.086
2003 Barton NP, Verma CS, Caves LSD. Inherent Flexibility of Calmodulin Domains:  A Normal-Mode Analysis Study The Journal of Physical Chemistry B. 107: 2170-2170. DOI: 10.1021/jp022634t  0.085
2019 Collins DM, Conlon NT, Kannan S, Verma CS, Eli LD, Lalani AS, Crown J. Preclinical Characteristics of the Irreversible Pan-HER Kinase Inhibitor Neratinib Compared with Lapatinib: Implications for the Treatment of HER2-Positive and -Mutated Breast Cancer. Cancers. 11. PMID 31141894 DOI: 10.3390/cancers11060737  0.085
2015 Verma C, Quraishi MA, Olasunkanmi LO, Ebenso EE. L-Proline-promoted synthesis of 2-amino-4-arylquinoline-3-carbonitriles as sustainable corrosion inhibitors for mild steel in 1 M HCl: Experimental and computational studies Rsc Advances. 5: 85417-85430. DOI: 10.1039/c5ra16982h  0.084
2002 Caves LS, Verma CS. Congruent qualitative behavior of complete and reconstructed phase space trajectories from biomolecular dynamics simulation. Proteins. 47: 25-30. PMID 11870862  0.084
2006 Oriz-Lombardia M, Verma CS. Proteins as data storage devices: insights from computer models Journal of Physics: Conference Series. 34: 7-14. DOI: 10.1088/1742-6596/34/1/002  0.08
2004 Greaves RB, Dodson GG, Verma CS. Altered ionization of the B13 Glu in insulin B9 and B10 mutants: a computational analysis. Protein Engineering, Design & Selection : Peds. 17: 557-63. PMID 15326283 DOI: 10.1093/protein/gzh066  0.079
2005 Kumar A, Mishra PC, Verma CS, Renugopalakrishnan V. Density functional study of the heme moiety of cytochrome c International Journal of Quantum Chemistry. 102: 1002-1009. DOI: 10.1002/Qua.20483  0.078
2013 Chan WT, Verma CS, Lane DP, Gan SK. A comparison and optimization of methods and factors affecting the transformation of Escherichia coli. Bioscience Reports. 33. PMID 24229075 DOI: 10.1042/Bsr20130098  0.078
2014 Verma CS, Suresh K. Towards FEA over tangled quads Procedia Engineering. 82: 187-199. DOI: 10.1016/J.Proeng.2014.10.383  0.077
2019 Sim WJ, Iyengar PV, Lama D, Lui SKL, Ng HC, Haviv-Shapira L, Domany E, Kappei D, Tan TZ, Saei A, Jaynes PW, Verma CS, Kumar AP, Rouanne M, Ha HK, et al. Author Correction: c-Met activation leads to the establishment of a TGFβ-receptor regulatory network in bladder cancer progression. Nature Communications. 10: 5148. PMID 31704935 DOI: 10.1038/S41467-019-13095-4  0.074
2022 Palafox M, Monserrat L, Bellet M, Villacampa G, Gonzalez-Perez A, Oliveira M, Brasó-Maristany F, Ibrahimi N, Kannan S, Mina L, Herrera-Abreu MT, Òdena A, Sánchez-Guixé M, Capelán M, Azaro A, ... ... Verma CS, et al. Author Correction: High p16 expression and heterozygous RB1 loss are biomarkers for CDK4/6 inhibitor resistance in ER breast cancer. Nature Communications. 13: 6928. PMID 36376284 DOI: 10.1038/s41467-022-34580-3  0.073
1996 Verma CS, Fischer S, Caves LSD, Roberts GCK, Hubbard RE. Calculation of the Reaction Pathway for the Aromatic Ring Flip in Methotrexate Complexed to Dihydrofolate Reductase The Journal of Physical Chemistry. 100: 2510-2518. DOI: 10.1021/jp952574+  0.072
2019 Lane DP, Verma CS. p53: updates on mechanisms, biology and therapy (I). Journal of Molecular Cell Biology. 11: 185-186. PMID 31222355 DOI: 10.1093/jmcb/mjz017  0.072
2021 Amirruddin NS, Tan WX, Tan YS, Gardner DS, Bee YM, Verma CS, Hoon S, Lee KO, Teo AKK. Progressive endoplasmic reticulum stress over time due to human insulin gene mutation contributes to pancreatic beta cell dysfunction. Diabetologia. PMID 34448879 DOI: 10.1007/s00125-021-05530-3  0.07
2021 Yoon J, Grinchuk OV, Kannan S, Ang MJY, Li Z, Tay EXY, Lok KZ, Lee BWL, Chuah YH, Chia K, Tirado Magallanes R, Liu C, Zhao H, Hor JH, Lim JJ, ... ... Verma CS, et al. A chemical biology approach reveals a dependency of glioblastoma on biotin distribution. Science Advances. 7: eabf6033. PMID 34516894 DOI: 10.1126/sciadv.abf6033  0.07
2015 Verma C, Mahadevan V, Rasiwasia N, Aggarwal G, Kant R, Jaimes A, Dey S. Construction and evaluation of ontological tag trees Expert Systems With Applications. 42: 9587-9602. DOI: 10.1016/J.Eswa.2015.07.057  0.07
2015 Verma C, Quraishi MA, Singh A. 2-Amino-5-nitro-4,6-diarylcyclohex-1-ene-1,3,3-tricarbonitriles as new and effective corrosion inhibitors for mild steel in 1 M HCl: Experimental and theoretical studies Journal of Molecular Liquids. 212: 804-812. DOI: 10.1016/j.molliq.2015.10.026  0.069
2016 Verma C, Olasunkanmi LO, Obot IB, Ebenso EE, Quraishi MA. 5-Arylpyrimido-[4,5-b]quinoline-diones as new and sustainable corrosion inhibitors for mild steel in 1 M HCl: A combined experimental and theoretical approach Rsc Advances. 6: 15639-15654. DOI: 10.1039/c5ra27417f  0.069
2015 Verma C, Kaewkangsadan V, Eremin JM, Cowley GP, Ilyas M, El-Sheemy MA, Eremin O. Natural killer (NK) cell profiles in blood and tumour in women with large and locally advanced breast cancer (LLABC) and their contribution to a pathological complete response (PCR) in the tumour following neoadjuvant chemotherapy (NAC): differential restoration of blood profiles by NAC and surgery. Journal of Translational Medicine. 13: 180. PMID 26040463 DOI: 10.1186/s12967-015-0535-8  0.068
2015 Verma C, Chaudhary A, Singh HS. Morphology and molecular analysis of Mizelleus indicus Jain (1957) and M. longicirrus (Tripathi, 1959) Venkatanarasaiah & Kulkarni 1981 (Monogenea, Dactylogyridae) from the freshwater shark Wallago attu in the Ganga River, India. Journal of Helminthology. 1-11. PMID 26373618 DOI: 10.1017/S0022149X15000814  0.067
2007 Hill CL, Lee CH, Smith DJ, Verma CS, Grogan G. On the resolution of chiral substrates by a retro-Claisenase enzyme: Biotransformations of heteroannular bicyclic β-diketones by 6-oxocamphor hydrolase Advanced Synthesis and Catalysis. 349: 1353-1360. DOI: 10.1002/adsc.200700046  0.062
2023 Wong E, Bertin N, Hebrard M, Tirado-Magallanes R, Bellis C, Lim WK, Chua CY, Tong PML, Chua R, Mak K, Lim TM, Cheong WY, Thien KE, Goh KT, Chai JF, ... ... Verma CS, et al. The Singapore National Precision Medicine Strategy. Nature Genetics. PMID 36658435 DOI: 10.1038/s41588-022-01274-x  0.062
2019 Lane DP, Verma CS. p53: updates on mechanisms, biology and therapy (II). Journal of Molecular Cell Biology. 11: 265-266. PMID 31222348 DOI: 10.1093/Jmcb/Mjz018  0.061
2014 Sharma DK, Singh R, Sharma SK, Gautam RK, Singh YP, Nayak AK, Mishra VK, Verma CL, Singh RK, Mishra B. Variety csr43 Indian Journal of Genetics and Plant Breeding. 74: 267.  0.061
2015 Korde R, Verma CB, Ebenso EE, Quraishi MA. Electrochemical and thermo dynamical investigation of 5-ethyl 4-(4-methoxyphenyl)-6-methyl-2-thioxo-1, 2, 3, 4 tetrahydropyrimidine-5-carboxylate on corrosion inhibition behavior of aluminium in 1m hydrochloric acid medium International Journal of Electrochemical Science. 10: 1081-1093.  0.06
2010 Lane D, Brown C, Cheok C, Verma C. 41 Applications of the inhibition of Mdm2 function in Cancer Therapy European Journal of Cancer Supplements. 8: 22-23. DOI: 10.1016/S1359-6349(10)71746-8  0.059
2016 Gupta NK, Verma C, Quraishi MA, Mukherjee AK. Schiff's bases derived from l-lysine and aromatic aldehydes as green corrosion inhibitors for mild steel: Experimental and theoretical studies Journal of Molecular Liquids. 215: 47-57. DOI: 10.1016/j.molliq.2015.12.027  0.059
2015 Verma C, Quraishi MA. 2-Amino-3-methyl-3-(4-nitrophenyl)-5-(phenylthio)-3H-pyrrole-4-carbonitrile as effective corrosion inhibitor for mild steel in 1M HCl: Thermodynamical, electrochemical, surface and theoretical calculation Ain Shams Engineering Journal. DOI: 10.1016/j.asej.2015.11.017  0.058
2015 Verma CB, Singh P, Bahadur I, Ebenso EE, Quraishi MA. Electrochemical, thermodynamic, surface and theoretical investigation of 2-aminobenzene-1,3-dicarbonitriles as green corrosion inhibitor for aluminum in 0.5 M NaOH Journal of Molecular Liquids. 209: 767-778. DOI: 10.1016/j.molliq.2015.06.039  0.058
2015 Verma CB, Quraishi MA, Singh A. A thermodynamical, electrochemical, theoretical and surface investigation of diheteroaryl thioethers as effective corrosion inhibitors for mild steel in 1M HCl Journal of the Taiwan Institute of Chemical Engineers. DOI: 10.1016/j.jtice.2015.06.020  0.056
2014 Chaudhary A, Verma C, Singh HS. Ribosomal DNA as molecular markers and their applications in the identification of fish parasites (Platyhelminthes: Monogenea) from India Asian Pacific Journal of Tropical Disease. 4: 82-84. DOI: 10.1016/S2222-1808(14)60320-0  0.056
2019 Raghavan SS, Chee S, Li J, Poschmann J, Nagarajan N, Jia Wei S, Verma CS, Ghadessy FJ. Development and application of a transcriptional sensor for detection of heterologous acrylic acid production in E. coli. Microbial Cell Factories. 18: 139. PMID 31426802 DOI: 10.1186/s12934-019-1185-y  0.056
2014 Verma CB, Quraishi MA, Ebenso EE. Application of some oligopolymers as effective corrosion inhibitors for mild steel in 1M HCl: Gravimetric, thermodynamic and electrochemical analysis International Journal of Electrochemical Science. 9: 5507-5519.  0.056
2015 Raikwar S, Tewari VK, Mukhopadhyay S, Verma CRB, Sreenivasulu Rao M. Simulation of components of a power shuttle transmission system for an agricultural tractor Computers and Electronics in Agriculture. 114: 114-124. DOI: 10.1016/j.compag.2015.03.006  0.056
2016 Verma C, Quraishi MA. Thermodynamic, electrochemical and surface studies of dendrimers as effective corrosion inhibitors for mild steel in 1 M HCl Analytical and Bioanalytical Electrochemistry. 8: 104-123.  0.055
2013 Verma C, Eremin JM, Robins A, Bennett AJ, Cowley GP, El-Sheemy MA, Jibril JA, Eremin O. Abnormal T regulatory cells (Tregs: FOXP3+, CTLA-4+), myeloid-derived suppressor cells (MDSCs: monocytic, granulocytic) and polarised T helper cell profiles (Th1, Th2, Th17) in women with large and locally advanced breast cancers undergoing neoadjuvant chemotherapy (NAC) and surgery: failure of abolition of abnormal treg profile with treatment and correlation of treg levels with pathological response to NAC. Journal of Translational Medicine. 11: 16. PMID 23320561 DOI: 10.1186/1479-5876-11-16  0.054
2014 Verma CP, Porathur JL, Thote NR, Roy PP, Karekal S. Empirical Approaches for Design of Web Pillars in Highwall Mining: Review and Analysis Geotechnical and Geological Engineering. 32: 587-599. DOI: 10.1007/s10706-013-9713-8  0.054
2023 Pandey A, Choudhary S, Verma CP, Mani N. Seminoma of testis with isolated bony metastasis at presentation. Journal of Cancer Research and Therapeutics. 19: 484-486. PMID 37313921 DOI: 10.4103/jcrt.jcrt_1957_21  0.054
2014 Verma CB, Quraishi MA, Ebenso EE. Electrochemical investigation of substituted aniline, melamine and formaldehyde based terpolymers as effective corrosion inhibitors for mild steel in 1M hydrochloric acid solution International Journal of Electrochemical Science. 9: 5537-5548.  0.054
2015 Verma C, Dey S. Methods to Obtain Training Videos for Fully Automated Application-Specific Classification Ieee Access. 3: 1188-1205. DOI: 10.1109/Access.2015.2461156  0.053
2013 Singh HP, Yadav M, Nayar A, Verma C, Aggarwal P, Bains SK. Ameloblastomatous calcifying ghost cell odontogenic cyst - a rare variant of a rare entity. Annali Di Stomatologia. 4: 156-60. PMID 23741537 DOI: 10.11138/ads.0156  0.05
2015 khandelwal L, Verma CB, Quraishi MA. Electrochemical and thermodynamical investigation of schiff's bases of glycine and aldehydes on corrosion inhibition behavior of mild steel in 1M hydrochloric acid medium Journal of Materials and Environmental Science. 6: 810-817.  0.049
2015 Verma CB, Ebenso EE, Bahadur I, Obot IB, Quraishi MA. 5-(Phenylthio)-3H-pyrrole-4-carbonitriles as effective corrosion inhibitors for mild steel in 1 M HCl: Experimental and theoretical investigation Journal of Molecular Liquids. 212: 209-218. DOI: 10.1016/j.molliq.2015.09.009  0.049
2015 Verma CB, Singh P, Quraishi MA. A thermodynamical, electrochemical and surface investigation of Bis (indolyl) methanes as Green corrosion inhibitors for mild steel in 1M hydrochloric acid solution Journal of the Association of Arab Universities For Basic and Applied Sciences. DOI: 10.1016/j.jaubas.2015.04.003  0.049
2014 Reddy MJ, Verma CB, Ebenso EE, Singh KK, Quaraishi MA. Electrochemical and thermodynamic investigation of nitrofurantoin as effective corrosion inhibitor for mild steel in 1M hydrochloric acid solution International Journal of Electrochemical Science. 9: 4884-4899.  0.048
2013 Haranahalli PE, Yadav S, Shukla M, Verma CM. A rare case of quadruple valve infective endocarditis of normal native valves - the advantage of TEE. TüRk Kardiyoloji DerneğI ArşIvi : TüRk Kardiyoloji DerneğInin YayıN OrganıDıR. 41: 732-5. PMID 24351949  0.048
2015 Verma CB, Singh A, Pallikonda G, Chakravarty M, Quraishi MA, Bahadur I, Ebenso EE. Aryl sulfonamidomethylphosphonates as new class of green corrosion inhibitors for mild steel in 1 M HCl: Electrochemical, surface and quantum chemical investigation Journal of Molecular Liquids. 209: 306-319. DOI: 10.1016/j.molliq.2015.06.013  0.047
2014 Verma CS, Sharma NK, Chariar VM, Maheshwari S, Hada MK. Comparative study of mechanical properties of bamboo laminae and their laminates with woods and wood based composites Composites Part B: Engineering. 60: 523-530. DOI: 10.1016/j.compositesb.2013.12.061  0.046
2014 Verma CB, Quraishi MA, Singh A. 2-Aminobenzene-1,3-dicarbonitriles as green corrosion inhibitor for mild steel in 1M HCl: Electrochemical, thermodynamic, surface and quantum chemical investigation Journal of the Taiwan Institute of Chemical Engineers. DOI: 10.1016/j.jtice.2014.11.029  0.046
2012 Shetty DC, Singh HP, Kumar P, Verma C. Report of Two Siblings with Overlapping Features of Ellis-van Creveld and Weyers Acrodental Dysostosis. Journal of Clinical Imaging Science. 2: 18. PMID 22616035 DOI: 10.4103/2156-7514.95432  0.046
2015 Verma C, Quraishi MA, Singh A. Corrigendum to "2-Aminobenzene-1, 3-dicarbonitriles as green corrosion inhibitor for mild steel in 1 M HCl: Electrochemical, thermodynamic, surface and quantum chemical investigation" [Journal of the Taiwan Institute of Chemical Engineers 49 (2015) 229-239] Journal of the Taiwan Institute of Chemical Engineers. DOI: 10.1016/j.jtice.2015.09.013  0.046
2014 Verma CB, Reddy MJ, Quraishi MA. Ultrasound assisted green synthesis of 3-(4-(Dimethylamino) Phenyl)-1-Phenylprop-2-En-1-One and its heterocyclics derived from Hydrazine, Urea and Thiourea as Corrosion Inhibitor for mild steel in 1M HCl Analytical and Bioanalytical Electrochemistry. 6: 515-534.  0.044
2014 Suwailem MA, Zarea MA, Saleh RF, Verma CX, Nooruddin HA. Pushing maximum reservoir contact applications to new limits in tight facies: A case study of Middle East's highest reservoir exposure producer Society of Petroleum Engineers - International Petroleum Technology Conference 2014, Iptc 2014: Unlocking Energy Through Innovation, Technology and Capability. 4: 2533-2543.  0.041
2015 Shahi G, Verma CB, Ebenso EE, Quraishi MA. Thermodynamic and electrochemical investigation of (9-[(R) 2[[bis [[(isopropoxycarbonyl)oxy]methoxy] phosphinyl] methoxy] propyl] adenine fumarate) as green corrosion inhibitor for mild steel in 1M HCl International Journal of Electrochemical Science. 10: 1102-1116.  0.041
2014 Singh P, Quraishi MA, Ebenso EE, Verma CB. Ultrasound assisted synthesis of chalcones as green corrosion inhibitors for mild steel in 1M hydrochloric solution International Journal of Electrochemical Science. 9: 7446-7459.  0.039
2007 Hill CL, Verma CS, Grogan G. Desymmetrisations of 1-alkylbicyclo[3.3.0]octane-2,8-diones by enzymatic retro-Claisen reaction yield optically enriched 2,3-substituted cyclopentanones Advanced Synthesis and Catalysis. 349: 916-924. DOI: 10.1002/adsc.200600468  0.038
2014 Mukherjee A, Jha S, Babu EVSSK, Verma CB. Discovery of a kimberlite pipe near Budikonda, Dharwar craton, south India: Field approaches, preliminary petrography and mineral chemistry Journal of the Geological Society of India. 84: 633-644. DOI: 10.1007/s12594-014-0174-3  0.037
2015 Verma C, Kaewkangsadan V, Eremin JM, Cowley GP, Ilyas M, El-Sheemy MA, Eremin O. Natural killer (NK) cell profiles in blood and tumour in women with large and locally advanced breast cancer (LLABC) and their contribution to a pathological complete response (PCR) in the tumour following neoadjuvant chemotherapy (NAC): Differential restoration of blood profiles by NAC and surgery Journal of Translational Medicine. 13. DOI: 10.1186/s12967-015-0535-8  0.037
2014 Sinha SK, Verma CM, Gupta G, Mittal P. Case images: Himalayan P waves in a patient with ischemic cardiomyopathy - a new entity. TüRk Kardiyoloji DerneğI ArşIvi : TüRk Kardiyoloji DerneğInin YayıN OrganıDıR. 42: 315. PMID 24769832 DOI: 10.5543/tkda.2014.40404  0.036
2011 Verma C, Rao PS, Raju MS. Public awareness on integration of leprosy services at primary health centres in Uttar Pradesh, India. Indian Journal of Leprosy. 83: 95-100. PMID 21972662  0.035
2014 Verma C, Rao PS. Determinants of rural women's participation in India's National Leprosy Eradication Programme. Indian Journal of Leprosy. 86: 105-10. PMID 26118222  0.034
2015 Verma C, Hart M, Bhatkar S, Parker-Wood A, Dey S. Access prediction for knowledge workers in enterprise data repositories Iceis 2015 - 17th International Conference On Enterprise Information Systems, Proceedings. 1: 150-161.  0.033
2015 Verma RP, Kumar K, Verma CB. Influence of foliar applied zinc on morpho-biochemical and yield of wheat (Triticum aestivum L.) varieties Biochemical and Cellular Archives. 15: 583-586.  0.033
2015 Verma C, Quraishi MA. Adsorption behavior of 8,9-bis(4 (dimethyl amino)phenyl)benzo[4,5]imidazo[1,2-a]pyridine-6,7-dicarbonitrile on mild steel surface in 1M HCl Journal of the Association of Arab Universities For Basic and Applied Sciences. DOI: 10.1016/j.jaubas.2016.01.003  0.032
2015 Mokan M, Sharma K, Sharma H, Verma C. Gbest guided differential evolution 9th International Conference On Industrial and Information Systems, Iciis 2014. DOI: 10.1109/ICIINFS.2014.7036663  0.032
2014 Porathur JL, Srikrishnan S, Verma CP, Jhanwar JC, Pal Roy P. Slope stability assessment approach for multiple seams Highwall Mining extractions International Journal of Rock Mechanics and Mining Sciences. 70: 444-449. DOI: 10.1016/j.ijrmms.2014.04.023  0.031
2015 Surana K, Singh PK, Bhattacharya B, Verma CS, Mehra RM. Synthesis of graphene oxide coated Nafion membrane for actuator application Ceramics International. 41: 5093-5099. DOI: 10.1016/j.ceramint.2014.12.080  0.028
2015 Verma C, Singh RK, Singh RB, Mishra S. Biochemical and In-silico studies on pectin methylesterase from G9 variety of musa acuminata for delayed ripening Open Biochemistry Journal. 9: 15-23.  0.028
2016 Kumar V, Sinha S, Kumar P, Razi M, Verma CM, Thakur R, Pandey U, Bhardwaj RS, Ahmad M, Bansal RK, Gupta S. Short-term outcome of acute inferior wall myocardial infarction with emphasis on conduction blocks: a prospective observational study in Indian population. Anatolian Journal of Cardiology. PMID 27752031 DOI: 10.14744/AnatolJCardiol.2016.6782  0.026
2014 Mukherjee A, Verma CB, Tiwari P, Prabhakar G. Genetic concepts: An effective search model and guide for iron ore exploration in India International Journal of Earth Sciences and Engineering. 7: 1265-1273.  0.026
2015 Sinha SK, Verma CM, Thakur R, Kumar V, Sachan M, Kumar A, Jha MJ, Mishra V. Subvalvar Mitral Aneurysm: A Rare Cause of Mitral Leak. Cardiology Research. 6: 297-299. PMID 28197245 DOI: 10.14740/cr408w  0.025
2015 Sinha SK, Goel A, Sachan M, Saraf S, Verma CM. Recurrent Hemorrhagic Pericardial Effusion and Tamponade due to Filariasis Successfully Treated with Ivermectin and Albendazole. Heart Views : the Official Journal of the Gulf Heart Association. 16: 53-5. PMID 26240733 DOI: 10.4103/1995-705X.159220  0.024
2016 Singh A, Panda SN, Saxena CK, Verma CL, Uzokwe VNE, Krause P, Gupta SK. Optimization modeling for conjunctive use planning of surface water and groundwater for irrigation Journal of Irrigation and Drainage Engineering. 142. DOI: 10.1061/(ASCE)IR.1943-4774.0000977  0.022
2011 John R, Verma CV. Changes in the health status and functional outcomes in acute traumatic hand injury patients, during physical therapy treatment. Indian Journal of Plastic Surgery : Official Publication of the Association of Plastic Surgeons of India. 44: 362-7. PMID 22022047 DOI: 10.4103/0970-0358.85358  0.022
2015 Balaji B, Verma C, Narayanaswamy B, Agarwal Y. Zodiac: Organizing large deployment of sensors to create reusable applications for buildings Buildsys 2015 - Proceedings of the 2nd Acm International Conference On Embedded Systems For Energy-Efficient Built. 13-22. DOI: 10.1145/2821650.2821674  0.021
2015 Sinha SK, Verma CM, Krishna V, Thakur R, Kumar P, Goel A, Kumar A, Razi M. Wondering PTCA Wire: Retrieval by Tangling Technique. Cardiology Research. 6: 257-259. PMID 28197236 DOI: 10.14740/cr392w  0.021
2014 Bouldin B, Verma C, Bellaci I, Black M, Dyer S, Algeryø J, De Oliveira T, Pan Y. Prototype test of an all-electric intelligent-completion system for extreme-reservoir-contact wells Spe Drilling and Completion. 29: 353-362.  0.02
2015 Divakar SR, Singh C, Verma CM, Kulkarni CD. Cesarean section under epidural anesthesia in a documented case of ruptured aneurysm of the sinus of valsalva. Journal of Anaesthesiology, Clinical Pharmacology. 31: 119-22. PMID 25788785 DOI: 10.4103/0970-9185.150565  0.019
2014 Verma C, Rao PSS. Determinants of rural women's participation in india's National Leprosy Eradication Programme Indian Journal of Leprosy. 86: 105-110.  0.018
2014 Kumar S, Garg V, Verma C, Bhooshan R, Zi-Song P, Tan LC. BGA packaging using insulated wire for die area reduction Proceedings of the 16th Electronics Packaging Technology Conference, Eptc 2014. 46-47. DOI: 10.1109/EPTC.2014.7028271  0.017
2020 Malik AJ, Aronica PGA, Verma CS. DStabilize: A Web Resource to Generate Mirror Images of Biomolecules. Structure (London, England : 1993). 28: 1376-1378. PMID 33264596 DOI: 10.1016/j.str.2020.11.010  0.017
2021 Choudhary S, Gupta N, Verma CP, Das A, Aggarwal LM, Tewari M, Mandal A, Asthana AK. Influence of adjuvant therapy on pattern of failure and survival in curatively resected gallbladder carcinoma. Journal of Cancer Research and Therapeutics. 17: 1064-1068. PMID 34528565 DOI: 10.4103/jcrt.JCRT_550_19  0.015
2020 Verma CS, Blundell T. Editorial. Progress in Biophysics and Molecular Biology. PMID 32084456 DOI: 10.1016/j.pbiomolbio.2020.02.004  0.014
2019 Matsudaira PT, Verma CS. Editorial. Progress in Biophysics and Molecular Biology. PMID 30951764 DOI: 10.1016/j.pbiomolbio.2019.03.008  0.014
2017 Bond PJ, Verma CS. Editorial. Progress in Biophysics and Molecular Biology. 128: 1-2. PMID 28743422 DOI: 10.1016/j.pbiomolbio.2017.07.005  0.014
2015 Sinha SK, Verma CM, Krishna V, Thakur R, Kumar B, Goel A, Kumar S, Kumar A, Jha MJ. ALCAPA in an Octogenarian Woman: An Enigma. Cardiology Research. 6: 289-291. PMID 28197243 DOI: 10.14740/cr400w  0.013
2021 Eisenhaber F, Verma C, Blundell T. In memoriam of Narayanaswamy Srinivasan (1962-2021). Proteins. PMID 34825411 DOI: 10.1002/prot.26287  0.01
2015 Sharma NK, Verma CS, Chariar VM, Prasad R. Eco-friendly flame-retardant treatments for cellulosic green building materials Indoor and Built Environment. 24: 422-432. DOI: 10.1177/1420326X13516655  0.01
2014 Sinha SK, Pandey U, Verma C, Kumar V, Godara M. Case images: unconventional route for performing coronary angiography. TüRk Kardiyoloji DerneğI ArşIvi : TüRk Kardiyoloji DerneğInin YayıN OrganıDıR. 42: 224. PMID 24643162 DOI: 10.5543/tkda.2014.75606  0.01
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