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Peter P. Calabrese, Ph.D. - Publications

Affiliations: 
2001 Cornell University, Ithaca, NY, United States 
Area:
Mathematics, Genetics
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29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Moura S, Hartl I, Brumovska V, Calabrese PP, Yasari A, Striedner Y, Bishara M, Mair T, Ebner T, Schütz GJ, Sevcsik E, Tiemann-Boege I. Exploring FGFR3 Mutations in the Male Germline: Implications for Clonal Germline Expansions and Paternal Age-Related Dysplasias. Genome Biology and Evolution. 16. PMID 38411226 DOI: 10.1093/gbe/evae015  0.311
2022 Eboreime J, Choi SK, Yoon SR, Sadybekov A, Katritch V, Calabrese P, Arnheim N. Germline selection of PTPN11 (HGNC:9644) variants make a major contribution to both Noonan syndrome's high birth rate and the transmission of sporadic cancer variants resulting in fetal abnormality. Human Mutation. PMID 36349709 DOI: 10.1002/humu.24493  0.318
2022 Kim K, Calabrese P, Wang S, Qin C, Rao Y, Feng P, Chen XS. The roles of APOBEC-mediated RNA editing in SARS-CoV-2 mutations, replication and fitness. Scientific Reports. 12: 14972. PMID 36100631 DOI: 10.1038/s41598-022-19067-x  0.309
2022 Kim K, Calabrese P, Wang S, Qin C, Rao Y, Feng P, Chen XS. The Roles of APOBEC-mediated RNA Editing in SARS-CoV-2 Mutations, Replication and Fitness. Research Square. PMID 35441170 DOI: 10.21203/rs.3.rs-1524060/v1  0.309
2016 Fischer JM, Calabrese PP, Miller AJ, Muñoz NM, Grady WM, Shibata D, Liskay RM. Single cell lineage tracing reveals a role for TgfβR2 in intestinal stem cell dynamics and differentiation. Proceedings of the National Academy of Sciences of the United States of America. 113: 12192-12197. PMID 27791005 DOI: 10.1073/Pnas.1611980113  0.35
2016 Eboreime J, Choi SK, Yoon SR, Arnheim N, Calabrese P. Estimating Exceptionally Rare Germline and Somatic Mutation Frequencies via Next Generation Sequencing. Plos One. 11: e0158340. PMID 27341568 DOI: 10.1371/Journal.Pone.0158340  0.457
2016 Arnheim N, Calabrese P. Germline Stem Cell Competition, Mutation Hot Spots, Genetic Disorders, and Older Fathers. Annual Review of Genomics and Human Genetics. PMID 27070266 DOI: 10.1146/Annurev-Genom-083115-022656  0.481
2013 Shinde DN, Elmer DP, Calabrese P, Boulanger J, Arnheim N, Tiemann-Boege I. New evidence for positive selection helps explain the paternal age effect observed in achondroplasia. Human Molecular Genetics. 22: 4117-26. PMID 23740942 DOI: 10.1093/Hmg/Ddt260  0.481
2013 Yoon SR, Choi SK, Eboreime J, Gelb BD, Calabrese P, Arnheim N. Age-dependent germline mosaicism of the most common noonan syndrome mutation shows the signature of germline selection. American Journal of Human Genetics. 92: 917-26. PMID 23726368 DOI: 10.1016/J.Ajhg.2013.05.001  0.471
2012 Choi SK, Yoon SR, Calabrese P, Arnheim N. Positive selection for new disease mutations in the human germline: evidence from the heritable cancer syndrome multiple endocrine neoplasia type 2B. Plos Genetics. 8: e1002420. PMID 22359510 DOI: 10.1371/Journal.Pgen.1002420  0.472
2011 Pham P, Calabrese P, Park SJ, Goodman MF. Analysis of a single-stranded DNA-scanning process in which activation-induced deoxycytidine deaminase (AID) deaminates C to U haphazardly and inefficiently to ensure mutational diversity. The Journal of Biological Chemistry. 286: 24931-42. PMID 21572036 DOI: 10.1074/Jbc.M111.241208  0.348
2011 Arnheim N, Calabrese P. Recurrent germline mutations in the FGFR2/3 genes, high mutation frequency, paternal skewing and age-dependence Monographs in Human Genetics. 19: 58-66. DOI: 10.1159/000318834  0.312
2010 Calabrese P, Shibata D. A simple algebraic cancer equation: Calculating how cancers may arise with normal mutation rates Bmc Cancer. 10. PMID 20051132 DOI: 10.1186/1471-2407-10-3  0.403
2009 Yoon SR, Qin J, Glaser RL, Jabs EW, Wexler NS, Sokol R, Arnheim N, Calabrese P. The ups and downs of mutation frequencies during aging can account for the Apert syndrome paternal age effect. Plos Genetics. 5: e1000558. PMID 19593369 DOI: 10.1371/Journal.Pgen.1000558  0.415
2009 Arnheim N, Calabrese P. Understanding what determines the frequency and pattern of human germline mutations. Nature Reviews. Genetics. 10: 478-88. PMID 19488047 DOI: 10.1038/Nrg2529  0.469
2008 Choi SK, Yoon SR, Calabrese P, Arnheim N. A germ-line-selective advantage rather than an increased mutation rate can explain some unexpectedly common human disease mutations. Proceedings of the National Academy of Sciences of the United States of America. 105: 10143-8. PMID 18632557 DOI: 10.1073/Pnas.0801267105  0.468
2007 Arnheim N, Calabrese P, Tiemann-Boege I. Mammalian meiotic recombination hot spots. Annual Review of Genetics. 41: 369-99. PMID 18076329 DOI: 10.1146/Annurev.Genet.41.110306.130301  0.32
2007 Qin J, Calabrese P, Tiemann-Boege I, Shinde DN, Yoon SR, Gelfand D, Bauer K, Arnheim N. The molecular anatomy of spontaneous germline mutations in human testes. Plos Biology. 5: e224. PMID 17760502 DOI: 10.1371/Journal.Pbio.0050224  0.485
2006 Tiemann-Boege I, Calabrese P, Cochran DM, Sokol R, Arnheim N. High-resolution recombination patterns in a region of human chromosome 21 measured by sperm typing. Plos Genetics. 2: e70. PMID 16680198 DOI: 10.1371/Journal.Pgen.0020070  0.31
2006 Toomajian C, Hu TT, Aranzana MJ, Lister C, Tang C, Zheng H, Zhao K, Calabrese P, Dean C, Nordborg M. A nonparametric test reveals selection for rapid flowering in the Arabidopsis genome. Plos Biology. 4: e137. PMID 16623598 DOI: 10.1371/Journal.Pbio.0040137  0.338
2005 Calabrese P, Mecklin JP, Järvinen HJ, Aaltonen LA, Tavaré S, Shibata D. Numbers of mutations to different types of colorectal cancer. Bmc Cancer. 5: 126. PMID 16202134 DOI: 10.1186/1471-2407-5-126  0.404
2005 Nordborg M, Hu TT, Ishino Y, Jhaveri J, Toomajian C, Zheng H, Bakker E, Calabrese P, Gladstone J, Goyal R, Jakobsson M, Kim S, Morozov Y, Padhukasahasram B, Plagnol V, et al. The pattern of polymorphism in Arabidopsis thaliana. Plos Biology. 3: e196. PMID 15907155 DOI: 10.1371/Journal.Pbio.0030196  0.322
2004 Bransteitter R, Pham P, Calabrese P, Goodman MF. Biochemical analysis of hypermutational targeting by wild type and mutant activation-induced cytidine deaminase. The Journal of Biological Chemistry. 279: 51612-21. PMID 15371439 DOI: 10.1074/Jbc.M408135200  0.403
2004 DuMont VB, Fay JC, Calabrese PP, Aquadro CF. DNA variability and divergence at the notch locus in Drosophila melanogaster and D. simulans: a case of accelerated synonymous site divergence. Genetics. 167: 171-85. PMID 15166145 DOI: 10.1534/Genetics.167.1.171  0.304
2004 Calabrese P, Tsao JL, Yatabe Y, Salovaara R, Mecklin JP, Järvinen HJ, Aaltonen LA, Tavaré S, Shibata D. Colorectal pretumor progression before and after loss of DNA mismatch repair. The American Journal of Pathology. 164: 1447-53. PMID 15039232 DOI: 10.1016/S0002-9440(10)63231-2  0.43
2004 Kim KM, Calabrese P, Tavaré S, Shibata D. Enhanced stem cell survival in familial adenomatous polyposis. The American Journal of Pathology. 164: 1369-77. PMID 15039224 DOI: 10.1016/S0002-9440(10)63223-3  0.386
2004 Calabrese P, Tavaré S, Shibata D. Pretumor progression: clonal evolution of human stem cell populations. The American Journal of Pathology. 164: 1337-46. PMID 15039221 DOI: 10.1016/S0002-9440(10)63220-8  0.434
2003 Calabrese P, Durrett R. Dinucleotide repeats in the Drosophila and human genomes have complex, length-dependent mutation processes. Molecular Biology and Evolution. 20: 715-25. PMID 12679531 DOI: 10.1093/Molbev/Msg084  0.572
2001 Calabrese PP, Durrett RT, Aquadro CF. Dynamics of microsatellite divergence under stepwise mutation and proportional slippage/point mutation models. Genetics. 159: 839-52. PMID 11606557  0.572
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