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Alberto Bartesaghi, Ph.D. - Publications

Affiliations: 
2005 University of Minnesota, Twin Cities, Minneapolis, MN 
Area:
Electronics and Electrical Engineering, Computer Science, Biomedical Engineering
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48 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Bendory T, Bartesaghi A, Singer A. Single-particle cryo-electron microscopy: Mathematical theory, computational challenges, and opportunities. Ieee Signal Processing Magazine. 37: 58-76. PMID 32395065 DOI: 10.1109/Msp.2019.2957822  0.337
2020 Henderson R, Lu M, Zhou Y, Mu Z, Parks R, Han Q, Hsu AL, Carter E, Blanchard SC, Edwards RJ, Wiehe K, Saunders KO, Borgnia MJ, Bartesaghi A, Mothes W, et al. Disruption of the HIV-1 Envelope allosteric network blocks CD4-induced rearrangements. Nature Communications. 11: 520. PMID 31980614 DOI: 10.1038/S41467-019-14196-W  0.333
2020 Zhou Y, Moscovich A, Bendory T, Bartesaghi A. Unsupervised particle sorting for high-resolution single-particle cryo-EM Inverse Problems. 36: 44002. DOI: 10.1088/1361-6420/Ab5Ec8  0.329
2019 Bartesaghi A. Expanding the Computational Toolbox for Single-Particle Cryo-Electron Microscopy Microscopy and Microanalysis. 25: 2686-2687. DOI: 10.1017/S1431927619014168  0.315
2018 Bartesaghi A, Aguerrebere C, Falconieri V, Banerjee S, Earl LA, Zhu X, Grigorieff N, Milne JLS, Sapiro G, Wu X, Subramaniam S. Atomic Resolution Cryo-EM Structure of β-Galactosidase. Structure (London, England : 1993). PMID 29754826 DOI: 10.1016/J.Str.2018.04.004  0.521
2016 Merk A, Bartesaghi A, Banerjee S, Falconieri V, Rao P, Davis MI, Pragani R, Boxer MB, Earl LA, Milne JL, Subramaniam S. Breaking Cryo-EM Resolution Barriers to Facilitate Drug Discovery. Cell. PMID 27238019 DOI: 10.1016/J.Cell.2016.05.040  0.355
2016 Borgnia MJ, Banerjee S, Merk A, Matthies D, Bartesaghi A, Rao P, Pierson J, Earl LA, Falconieri V, Subramaniam S, Milne JL. Using cryo-EM to map small ligands on dynamic metabolic enzymes: Studies with glutamate dehydrogenase. Molecular Pharmacology. PMID 27036132 DOI: 10.1124/Mol.116.103382  0.314
2016 Banerjee S, Bartesaghi A, Merk A, Rao P, Bulfer SL, Yan Y, Green N, Mroczkowski B, Neitz RJ, Wipf P, Falconieri V, Deshaies RJ, Milne JL, Huryn D, Arkin M, et al. 2.3 Å resolution cryo-EM structure of human p97 and mechanism of allosteric inhibition. Science (New York, N.Y.). PMID 26822609 DOI: 10.1126/Science.Aad7974  0.326
2016 Aguerrebere C, Delbracio M, Bartesaghi A, Sapiro G. Fundamental Limits in Multi-Image Alignment Ieee Transactions On Signal Processing. 64: 5707-5722. DOI: 10.1109/Tsp.2016.2600517  0.492
2016 Borgnia MJ, Banerjee S, Bartesaghi A, Matthies D, Rao P, Merk A, Pierson J, Milne JL, Subramaniam S. Using cryo-EM to Untangle the Conformational Landscape of a Small Allosterically-Regulated Complex Biophysical Journal. 110: 22a. DOI: 10.1016/J.Bpj.2015.11.179  0.366
2016 Matthies D, Dalmas O, Borgnia MJ, Dominik PK, Merk A, Rao P, Reddy BG, Islam S, Bartesaghi A, Perozo E, Subramaniam S. Single-Particle Cryo-EM Studies of a 200-kDa Magnesium Ion Channel Reveal Large Structural Changes Upon Gating Biophysical Journal. 110: 10a. DOI: 10.1016/J.Bpj.2015.11.109  0.311
2015 Bartesaghi A, Merk A, Banerjee S, Matthies D, Wu X, Milne JL, Subramaniam S. 2.2 Å resolution cryo-EM structure of β-galactosidase in complex with a cell-permeant inhibitor. Science (New York, N.Y.). 348: 1147-51. PMID 25953817 DOI: 10.1126/Science.Aab1576  0.354
2015 Borgnia MJ, Banerjee S, Rao P, Bartesaghi A, Merk A, Pierson J, Subramaniam S, Milne J. Localization of Small Ligands in a Metabolic Protein Complex using Cryo-Electron Microscopy Biophysical Journal. 108: 514a. DOI: 10.1016/J.Bpj.2014.11.2818  0.338
2015 Matthies D, Bartesaghi A, Merk A, Banerjee S, Subramaniam S. Residue Specific Radiation Damage of Protein Structures using High-Resolution Cryo-Electron Microscopy Biophysical Journal. 108: 190a. DOI: 10.1016/J.Bpj.2014.11.1052  0.346
2014 Bartesaghi A, Matthies D, Banerjee S, Merk A, Subramaniam S. Structure of β-galactosidase at 3.2-Å resolution obtained by cryo-electron microscopy. Proceedings of the National Academy of Sciences of the United States of America. 111: 11709-14. PMID 25071206 DOI: 10.1073/Pnas.1402809111  0.329
2014 Tran EE, Simmons JA, Bartesaghi A, Shoemaker CJ, Nelson E, White JM, Subramaniam S. Spatial localization of the Ebola virus glycoprotein mucin-like domain determined by cryo-electron tomography. Journal of Virology. 88: 10958-62. PMID 25008940 DOI: 10.1128/Jvi.00870-14  0.334
2014 Yoo TS, Lowekamp BC, Kuybeda O, Narayan K, Frank GA, Bartesaghi A, Borgnia M, Subramaniam S, Sapiro G, Ackerman MJ. Accelerating discovery in 3D microanalysis: Leveraging open source software and deskside high performance computing Microscopy and Microanalysis. 20: 774-775. DOI: 10.1017/S1431927614005595  0.464
2014 Bartesaghi A, Pierson J, Rao P, Banerjee S, Borgnia M, Yu L, Earl L, Alink M, Milne J, Subramaniam S. Structure Determination of Small Macromolecular Complexes by Cryo-Electron Microscopy Biophysical Journal. 106: 601a. DOI: 10.1016/J.Bpj.2013.11.3329  0.382
2013 Bartesaghi A, Merk A, Borgnia MJ, Milne JL, Subramaniam S. Prefusion structure of trimeric HIV-1 envelope glycoprotein determined by cryo-electron microscopy. Nature Structural & Molecular Biology. 20: 1352-7. PMID 24154805 DOI: 10.1038/Nsmb.2711  0.35
2013 Harris AK, Bartesaghi A, Milne JL, Subramaniam S. HIV-1 envelope glycoprotein trimers display open quaternary conformation when bound to the gp41 membrane-proximal external-region-directed broadly neutralizing antibody Z13e1. Journal of Virology. 87: 7191-6. PMID 23596305 DOI: 10.1128/Jvi.03284-12  0.325
2013 Milne JL, Borgnia MJ, Bartesaghi A, Tran EE, Earl LA, Schauder DM, Lengyel J, Pierson J, Patwardhan A, Subramaniam S. Cryo-electron microscopy--a primer for the non-microscopist. The Febs Journal. 280: 28-45. PMID 23181775 DOI: 10.1111/Febs.12078  0.354
2013 Kuybeda O, Frank GA, Bartesaghi A, Borgnia M, Subramaniam S, Sapiro G. A collaborative framework for 3D alignment and classification of heterogeneous subvolumes in cryo-electron tomography. Journal of Structural Biology. 181: 116-27. PMID 23110852 DOI: 10.1016/J.Jsb.2012.10.010  0.552
2013 Bartesaghi A, Pierson J, Schauder D, Borgnia M, Subramaniam S. Automated Workflows for Structure Determination by Single-Particle Cryo-EM at Sub-Nanometer Resolutions Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.1955  0.369
2013 Tran EE, Kuybeda O, Bartesaghi A, Milne JL, Subramaniam S. Binding of Neutralizing Antibodies Results in Distinct Quaternary Conformations of Trimeric HIV-1 Envelope Glycoproteins Biophysical Journal. 104: 352a. DOI: 10.1016/J.Bpj.2012.11.1952  0.339
2013 Borgnia MJ, Bartesaghi A, Tran E, Milne JL, Subramaniam S. 9 Å Structure of Trimeric HIV-1 Envelope Glycoprotein in an Activated State Biophysical Journal. 104: 350a. DOI: 10.1016/J.Bpj.2012.11.1946  0.37
2012 Bartesaghi A, Lecumberry F, Sapiro G, Subramaniam S. Protein secondary structure determination by constrained single-particle cryo-electron tomography. Structure (London, England : 1993). 20: 2003-13. PMID 23217682 DOI: 10.1016/J.Str.2012.10.016  0.558
2012 Tran EE, Borgnia MJ, Kuybeda O, Schauder DM, Bartesaghi A, Frank GA, Sapiro G, Milne JL, Subramaniam S. Structural mechanism of trimeric HIV-1 envelope glycoprotein activation. Plos Pathogens. 8: e1002797. PMID 22807678 DOI: 10.1371/Journal.Ppat.1002797  0.529
2012 Frank GA, Bartesaghi A, Kuybeda O, Borgnia MJ, White TA, Sapiro G, Subramaniam S. Computational separation of conformational heterogeneity using cryo-electron tomography and 3D sub-volume averaging. Journal of Structural Biology. 178: 165-76. PMID 22248450 DOI: 10.1016/J.Jsb.2012.01.004  0.56
2012 Tran EEH, Borgnia MJ, Kuybeda O, Schauder DM, Bartesaghi A, Frank GA, Sapiro G, Milne JLS, Subramaniam S. Structure of trimeric HIV-1 BaL Env bound to VRC01 and VRC03 antibodies. Plos Pathogens. DOI: 10.1371/Journal.Ppat.1002797.G002  0.488
2011 Meyerson JR, White TA, Bliss D, Moran A, Bartesaghi A, Borgnia MJ, de la Cruz MJ, Schauder D, Hartnell LM, Nandwani R, Dawood M, Kim B, Kim JH, Sununu J, Yang L, et al. Determination of molecular structures of HIV envelope glycoproteins using cryo-electron tomography and automated sub-tomogram averaging. Journal of Visualized Experiments : Jove. PMID 22158337 DOI: 10.3791/2770  0.36
2011 White TA, Bartesaghi A, Borgnia MJ, de la Cruz MJ, Nandwani R, Hoxie JA, Bess JW, Lifson JD, Milne JL, Subramaniam S. Three-dimensional structures of soluble CD4-bound states of trimeric simian immunodeficiency virus envelope glycoproteins determined by using cryo-electron tomography. Journal of Virology. 85: 12114-23. PMID 21937655 DOI: 10.1128/Jvi.05297-11  0.362
2011 Harris A, Borgnia MJ, Shi D, Bartesaghi A, He H, Pejchal R, Kang Y, Depetris R, Marozsan AJ, Sanders RW, Klasse PJ, Milne JLS, Wilson IA, Olson WC, Moore JP, et al. Trimeric HIV-1 glycoprotein gp140 immunogens and native HIV-1 envelope glycoproteins display the same closed and open quaternary molecular architectures Proceedings of the National Academy of Sciences of the United States of America. 108: 11440-11445. PMID 21709254 DOI: 10.1073/Pnas.1101414108  0.328
2010 White TA, Bartesaghi A, Borgnia MJ, Meyerson JR, de la Cruz MJ, Bess JW, Nandwani R, Hoxie JA, Lifson JD, Milne JL, Subramaniam S. Molecular architectures of trimeric SIV and HIV-1 envelope glycoproteins on intact viruses: strain-dependent variation in quaternary structure. Plos Pathogens. 6: e1001249. PMID 21203482 DOI: 10.1371/Journal.Ppat.1001249  0.352
2010 White T, Bartesaghi A, Borgnia M, de la Cruz M, Milne J, Subramaniam S. Structural Studies of Trimeric SIV and HIV-1 Envelope Glycoproteins Using Cryo-Electron Tomography Microscopy and Microanalysis. 16: 882-883. DOI: 10.1017/S1431927610061350  0.349
2009 Bartesaghi A, Subramaniam S. Membrane protein structure determination using cryo-electron tomography and 3D image averaging. Current Opinion in Structural Biology. 19: 402-7. PMID 19646859 DOI: 10.1016/J.Sbi.2009.06.005  0.345
2008 Liu J, Bartesaghi A, Borgnia MJ, Sapiro G, Subramaniam S. Molecular architecture of native HIV-1 gp120 trimers. Nature. 455: 109-13. PMID 18668044 DOI: 10.1038/Nature07159  0.526
2008 Bartesaghi A, Sprechmann P, Liu J, Randall G, Sapiro G, Subramaniam S. Classification and 3D averaging with missing wedge correction in biological electron tomography. Journal of Structural Biology. 162: 436-50. PMID 18440828 DOI: 10.1016/J.Jsb.2008.02.008  0.552
2007 Subramaniam S, Bartesaghi A, Liu J, Bennett AE, Sougrat R. Electron tomography of viruses. Current Opinion in Structural Biology. 17: 596-602. PMID 17964134 DOI: 10.1016/J.Sbi.2007.09.009  0.352
2007 Sougrat R, Bartesaghi A, Lifson JD, Bennett AE, Bess JW, Zabransky DJ, Subramaniam S. Electron tomography of the contact between T cells and SIV/HIV-1: implications for viral entry. Plos Pathogens. 3: e63. PMID 17480119 DOI: 10.1371/Journal.Ppat.0030063  0.346
2007 Bartesaghi A, Sprechmann P, Randall G, Sapiro G, Subramaniam S. Classification, averaging and reconstruction of macromolecules in electron tomography 2007 4th Ieee International Symposium On Biomedical Imaging: From Nano to Macro - Proceedings. 244-247. DOI: 10.1109/ISBI.2007.356834  0.5
2007 Aganj I, Bartesaghi A, Borgnia M, Liao HY, Sapiro G, Subramaniam S. Regularization for inverting the radon transform with wedge consideration 2007 4th Ieee International Symposium On Biomedical Imaging: From Nano to Macro - Proceedings. 217-220. DOI: 10.1109/ISBI.2007.356827  0.61
2006 Mohan A, Bartesaghi A, Sapiro G. Constrained regularization of digital terrain elevation data Ieee Geoscience and Remote Sensing Letters. 3: 59-62. DOI: 10.1109/Lgrs.2005.856702  0.474
2006 Yatziv L, Bartesaghi A, Sapiro G. O(N) implementation of the fast marching algorithm Journal of Computational Physics. 212: 393-399. DOI: 10.1016/J.Jcp.2005.08.005  0.662
2005 Bartesaghi A, Sapiro G, Subramaniam S. An energy-based three-dimensional segmentation approach for the quantitative interpretation of electron tomograms. Ieee Transactions On Image Processing : a Publication of the Ieee Signal Processing Society. 14: 1314-23. PMID 16190467 DOI: 10.1109/Tip.2005.852467  0.552
2005 Bartesaghi A, Sapiro G. Tracking of moving objects under severe and total occlusions Proceedings - International Conference On Image Processing, Icip. 1: 301-304. DOI: 10.1109/ICIP.2005.1529747  0.417
2005 Bartesaghi A, Sapiro G, Malzbender T, Gelb D. Three-dimensional shape rendering from multiple images Graphical Models. 67: 332-346. DOI: 10.1016/J.Gmod.2005.02.002  0.51
2004 Bartesaghi A, Sapiro G, Malzbender T, Gelb D. Non-photorealistic rendering from multiple images Proceedings - International Conference On Image Processing, Icip. 4: 2403-2406. DOI: 10.1109/ICIP.2004.1421585  0.443
2001 Bartesaghi A, Sapiro G. A system for the generation of curves on 3D brain images. Human Brain Mapping. 14: 1-15. PMID 11500986 DOI: 10.1002/Hbm.1037  0.486
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