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Yael David - Publications

Affiliations: 
mskcc, New York, NY, United States 
Area:
Epigenetics
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34/47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Tiedemann RL, Hrit J, Du Q, Wiseman AK, Eden HE, Dickson BM, Kong X, Chomiak AA, Vaughan RM, Hebert JM, David Y, Zhou W, Baylin SB, Jones PA, Clark SJ, et al. UHRF1 ubiquitin ligase activity supports the maintenance of low-density CpG methylation. Biorxiv : the Preprint Server For Biology. PMID 38405904 DOI: 10.1101/2024.02.13.580169  0.327
2024 Feierman ER, Louzon S, Prescott NA, Biaco T, Gao Q, Qiu Q, Choi K, Palozola KC, Voss AJ, Mehta S, Quaye C, Lynch K, Fuccillo M, Wu H, David Y, et al. Histone variant H2BE enhances chromatin accessibility in neurons to promote synaptic gene expression and long-term memory. Biorxiv : the Preprint Server For Biology. PMID 38352334 DOI: 10.1101/2024.01.29.575103  0.325
2023 Agustinus AS, Al-Rawi D, Dameracharla B, Raviram R, Jones BSCL, Stransky S, Scipioni L, Luebeck J, Di Bona M, Norkunaite D, Myers RM, Duran M, Choi S, Weigelt B, Yomtoubian S, ... ... David Y, et al. Epigenetic dysregulation from chromosomal transit in micronuclei. Nature. PMID 37286593 DOI: 10.1038/s41586-023-06084-7  0.317
2023 Finkin-Groner E, Al-Kachak A, Agustinus A, Bastle R, Lepack A, Lyu Y, Maze I, David Y. Flexible and site-specific manipulation of histones in live animals. Biorxiv : the Preprint Server For Biology. PMID 36993231 DOI: 10.1101/2023.03.19.533378  0.379
2023 Knörlein A, Xiao Y, David Y. Leveraging histone glycation for cancer diagnostics and therapeutics. Trends in Cancer. PMID 36804508 DOI: 10.1016/j.trecan.2023.01.005  0.385
2022 Ray DM, Jennings EQ, Maksimovic I, Chai X, Galligan JJ, David Y, Zheng Q. Chemical Labeling and Enrichment of Histone Glyoxal Adducts. Acs Chemical Biology. PMID 35294181 DOI: 10.1021/acschembio.1c00864  0.449
2021 Sheban D, Shani T, Maor R, Aguilera-Castrejon A, Mor N, Oldak B, Shmueli MD, Eisenberg-Lerner A, Bayerl J, Hebert J, Viukov S, Chen G, Kacen A, Krupalnik V, Chugaeva V, ... ... David Y, et al. SUMOylation of linker histone H1 drives chromatin condensation and restriction of embryonic cell fate identity. Molecular Cell. PMID 34875212 DOI: 10.1016/j.molcel.2021.11.011  0.324
2021 Faulkner S, Maksimovic I, David Y. A chemical field guide to histone nonenzymatic modifications. Current Opinion in Chemical Biology. 63: 180-187. PMID 34157651 DOI: 10.1016/j.cbpa.2021.05.002  0.446
2021 Maksimovic I, David Y. Non-enzymatic Covalent Modifications as a New Chapter in the Histone Code. Trends in Biochemical Sciences. PMID 33965314 DOI: 10.1016/j.tibs.2021.04.004  0.408
2020 Willcockson MA, Healton SE, Weiss CN, Bartholdy BA, Botbol Y, Mishra LN, Sidhwani DS, Wilson TJ, Pinto HB, Maron MI, Skalina KA, Toro LN, Zhao J, Lee CH, Hou H, ... ... David Y, et al. H1 histones control the epigenetic landscape by local chromatin compaction. Nature. PMID 33299182 DOI: 10.1038/s41586-020-3032-z  0.308
2020 Zheng Q, Osunsade A, David Y. Protein arginine deiminase 4 antagonizes methylglyoxal-induced histone glycation. Nature Communications. 11: 3241. PMID 32591537 DOI: 10.1038/S41467-020-17066-Y  0.765
2020 Maksimovic I, Zheng Q, Trujillo MN, Galligan JJ, David Y. An Azidoribose Probe to Track Ketoamine Adducts in Histone Ribose Glycation. Journal of the American Chemical Society. PMID 32390412 DOI: 10.1021/Jacs.0C01325  0.751
2020 Zheng Q, Maksimovic I, Upad A, David Y. Non-enzymatic covalent modifications: a new link between metabolism and epigenetics. Protein & Cell. PMID 32356279 DOI: 10.1007/S13238-020-00722-W  0.763
2020 Prescott NA, David Y. In Vivo Histone Labeling Using Ultrafast trans-Splicing Inteins. Methods in Molecular Biology (Clifton, N.J.). 2133: 201-219. PMID 32144669 DOI: 10.1007/978-1-0716-0434-2_10  0.465
2019 Zheng Q, Maksimovic I, Upad A, Guber D, David Y. Synthesis of an Alkynyl Methylglyoxal Probe to Investigate Non-enzymatic Histone Glycation. The Journal of Organic Chemistry. PMID 31875401 DOI: 10.1021/Acs.Joc.9B02504  0.745
2019 Yusufova N, Teater MR, Soshnev A, Kloetgen A, Osunsade A, Conway J, Doane A, Skoultchi A, Tsirigos A, David Y, Allis CD, Cesarman E, Melnick A. Histone 1 Mutations Drive Lymphomagenesis By Inducing Primitive Stem Cell Functions and Epigenetic Instructions through Profound 3D Re-Organization of the B-Cell Genome. Blood. 134: 23. PMID 31723979 DOI: 10.1182/Blood-2019-127774  0.331
2019 Maksimovic I, Ray D, Zheng Q, David Y. Utilizing intein trans-splicing for in vivo generation of site-specifically modified proteins. Methods in Enzymology. 626: 203-222. PMID 31606075 DOI: 10.1016/Bs.Mie.2019.07.015  0.738
2019 Prescott NA, Bram Y, Schwartz RE, David Y. Targeting Hepatitis B Virus cccDNA and HBx: Recent Advances and New Approaches. Acs Infectious Diseases. PMID 31525994 DOI: 10.1021/Acsinfecdis.9B00249  0.302
2019 Zheng Q, Omans ND, Leicher R, Osunsade A, Agustinus AS, Finkin-Groner E, D'Ambrosio H, Liu B, Chandarlapaty S, Liu S, David Y. Reversible histone glycation is associated with disease-related changes in chromatin architecture. Nature Communications. 10: 1289. PMID 30894531 DOI: 10.1038/S41467-019-09192-Z  0.774
2019 Zheng Q, Prescott NA, Maksimovic I, David Y. (de)Toxifying the Epigenetic Code. Chemical Research in Toxicology. PMID 30839196 DOI: 10.1021/Acs.Chemrestox.9B00013  0.77
2018 Osunsade A, Prescott NA, Hebert JM, Ray DM, Jmeian Y, Lorenz IC, David Y. A Robust Method for the Purification and Characterization of Recombinant Human Histone H1 Variants. Biochemistry. PMID 30585724 DOI: 10.1021/Acs.Biochem.8B01060  0.434
2017 Oslund RC, Su X, Haugbro M, Kee JM, Esposito M, David Y, Wang B, Ge E, Perlman DH, Kang Y, Muir TW, Rabinowitz JD. Bisphosphoglycerate mutase controls serine pathway flux via 3-phosphoglycerate. Nature Chemical Biology. PMID 28805803 DOI: 10.1038/Nchembio.2453  0.705
2017 David Y, Muir TW. Emerging chemistry strategies for engineering native chromatin. Journal of the American Chemical Society. PMID 28635271 DOI: 10.1021/Jacs.7B03430  0.594
2017 Liszczak GP, Brown ZZ, Kim SH, Oslund RC, David Y, Muir TW. Genomic targeting of epigenetic probes using a chemically tailored Cas9 system. Proceedings of the National Academy of Sciences of the United States of America. PMID 28069948 DOI: 10.1073/Pnas.1615723114  0.553
2015 Holt MT, David Y, Pollock S, Tang Z, Jeon J, Kim J, Roeder RG, Muir TW. Identification of a functional hotspot on ubiquitin required for stimulation of methyltransferase activity on chromatin. Proceedings of the National Academy of Sciences of the United States of America. PMID 26240340 DOI: 10.1073/Pnas.1504483112  0.742
2015 David Y, Vila-Perelló M, Verma S, Muir TW. Chemical tagging and customizing of cellular chromatin states using ultrafast trans-splicing inteins. Nature Chemistry. 7: 394-402. PMID 25901817 DOI: 10.1038/Nchem.2224  0.79
2015 Altun M, Walter TS, Kramer HB, Herr P, Iphöfer A, Boström J, David Y, Komsany A, Ternette N, Navon A, Stuart DI, Ren J, Kessler BM. The human otubain2-ubiquitin structure provides insights into the cleavage specificity of poly-ubiquitin-linkages. Plos One. 10: e0115344. PMID 25590432 DOI: 10.1371/Journal.Pone.0115344  0.623
2015 Altun M, Walter TS, Kramer HB, Herr P, Iphöfer A, Boström J, David Y, Komsany A, Ternette N, Navon A, Stuart DI, Ren J, Kessler BM. OTUB2 has a broader cleavage profile than OTUB1. Plos One. DOI: 10.1371/Journal.Pone.0115344.G005  0.554
2014 Nguyen UT, Bittova L, Müller MM, Fierz B, David Y, Houck-Loomis B, Feng V, Dann GP, Muir TW. Accelerated chromatin biochemistry using DNA-barcoded nucleosome libraries. Nature Methods. 11: 834-40. PMID 24997861 DOI: 10.1038/Nmeth.3022  0.77
2014 Berko D, Herkon O, Braunstein I, Isakov E, David Y, Ziv T, Navon A, Stanhill A. Inherent asymmetry in the 26S proteasome is defined by the ubiquitin receptor RPN13. The Journal of Biological Chemistry. 289: 5609-18. PMID 24429290 DOI: 10.1074/Jbc.M113.509380  0.706
2012 Pomerantz Y, Elbaz J, Ben-Eliezer I, Reizel Y, David Y, Galiani D, Nevo N, Navon A, Dekel N. From ubiquitin-proteasomal degradation to CDK1 inactivation: requirements for the first polar body extrusion in mouse oocytes. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 26: 4495-505. PMID 22859367 DOI: 10.1096/Fj.12-209866  0.596
2011 David Y, Ternette N, Edelmann MJ, Ziv T, Gayer B, Sertchook R, Dadon Y, Kessler BM, Navon A. E3 ligases determine ubiquitination site and conjugate type by enforcing specificity on E2 enzymes. The Journal of Biological Chemistry. 286: 44104-15. PMID 21965653 DOI: 10.1074/Jbc.M111.234559  0.623
2011 Shimshon L, Michaeli A, Hadar R, Nutt SL, David Y, Navon A, Waisman A, Tirosh B. SUMOylation of Blimp-1 promotes its proteasomal degradation. Febs Letters. 585: 2405-9. PMID 21722636 DOI: 10.1016/J.Febslet.2011.06.022  0.612
2010 David Y, Ziv T, Admon A, Navon A. The E2 ubiquitin-conjugating enzymes direct polyubiquitination to preferred lysines. The Journal of Biological Chemistry. 285: 8595-604. PMID 20061386 DOI: 10.1074/Jbc.M109.089003  0.625
Low-probability matches (unlikely to be authored by this person)
2021 Wu A, Zhi J, Tian T, Cihan A, Cevher MA, Liu Z, David Y, Muir TW, Roeder RG, Yu M. DOT1L complex regulates transcriptional initiation in human erythroleukemic cells. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34187895 DOI: 10.1073/pnas.2106148118  0.262
2022 Nguyen T, Li S, Chang JT, Watters JW, Ng H, Osunsade A, David Y, Liu S. Chromatin sequesters pioneer transcription factor Sox2 from exerting force on DNA. Nature Communications. 13: 3988. PMID 35810158 DOI: 10.1038/s41467-022-31738-x  0.235
2020 Yusufova N, Kloetgen A, Teater M, Osunsade A, Camarillo JM, Chin CR, Doane AS, Venters BJ, Portillo-Ledesma S, Conway J, Phillip JM, Elemento O, Scott DW, Béguelin W, Licht JD, ... ... David Y, et al. Histone H1 loss drives lymphoma by disrupting 3D chromatin architecture. Nature. PMID 33299181 DOI: 10.1038/s41586-020-3017-y  0.235
2021 Maksimovic I, Finkin-Groner E, Fukase Y, Zheng Q, Sun S, Michino M, Huggins DJ, Myers RW, David Y. Deglycase-activity oriented screening to identify DJ-1 inhibitors. Rsc Medicinal Chemistry. 12: 1232-1238. PMID 34355187 DOI: 10.1039/d1md00062d  0.233
2022 Leicher R, Osunsade A, Chua GNL, Faulkner SC, Latham AP, Watters JW, Nguyen T, Beckwitt EC, Christodoulou-Rubalcava S, Young PG, Zhang B, David Y, Liu S. Single-stranded nucleic acid binding and coacervation by linker histone H1. Nature Structural & Molecular Biology. PMID 35484234 DOI: 10.1038/s41594-022-00760-4  0.219
2022 Pluta R, Aragón E, Prescott NA, Ruiz L, Mees RA, Baginski B, Flood JR, Martin-Malpartida P, Massagué J, David Y, Macias MJ. Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1. Nature Communications. 13: 7279. PMID 36435807 DOI: 10.1038/s41467-022-34925-y  0.215
2022 Ray D, Flood J, David Y. Harnessing Split-Inteins as a Tool for the Selective Modification of Surface Receptors in Live Cells. Chembiochem : a European Journal of Chemical Biology. PMID 36178424 DOI: 10.1002/cbic.202200487  0.215
2023 Corless BC, Geißen R, Prescott NA, David Y, Scheinberg DA, Tan DS. Chemoenzymatic Synthesis of Novel Cytotoxic Epoxyketones Using the Eponemycin Biosynthetic Enzyme EpnF. Acs Chemical Biology. PMID 37172287 DOI: 10.1021/acschembio.3c00080  0.193
2023 Pihl R, Zheng Q, David Y. Nature-inspired protein ligation and its applications. Nature Reviews. Chemistry. 7: 234-255. PMID 37117416 DOI: 10.1038/s41570-023-00468-z  0.187
2024 Agustinus AS, David Y. Thinking outside the chromosome: epigenetic mechanisms in non-canonical chromatin species. Nature Structural & Molecular Biology. 31: 8-10. PMID 38253662 DOI: 10.1038/s41594-023-01200-7  0.12
2021 David Y, Oslund RC. From Basic Biology Discovery to Translational Impact: The Boundless Roles of Chemical Biology. Chembiochem : a European Journal of Chemical Biology. PMID 34730874 DOI: 10.1002/cbic.202100536  0.102
2023 Banerjee R, David Y, Chan JC. Incorporating chemical structures into scientific figures. Trends in Biochemical Sciences. 48: 743-745. PMID 37567151 DOI: 10.1016/j.tibs.2023.06.003  0.089
2021 Shah UA, Rögnvaldsson S, Derkach A, Björkholm M, Turesson I, David Y, Hultcrantz M, Tan C, Hassoun H, Korde N, Lesokhin A, Mailankody S, Kristinsson SY, Landgren CO. Diabetes mellitus and risk of plasma cell and lymphoproliferative disorders in 94,579 cases and 368,348 matched controls. Haematologica. PMID 34474548 DOI: 10.3324/haematol.2021.278772  0.057
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