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Daniel Herschlag

Affiliations: 
Stanford University, Palo Alto, CA 
Area:
ribozymes
Website:
http://cmgm.stanford.edu/biochem/herschlag/membersdanexpand.html
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Parents

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William P. Jencks grad student 1988 Brandeis
 (Mechanisms of phosphoryl transfer)
Thomas R. Cech post-doc 1989-1992 CU Boulder

Children

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Florian Hollfelder research assistant 1994-1994 Stanford Medical School
Jacob Parres-Gold research assistant 2020-2021 Stanford
Geeta J. Narlikar grad student 1992-1998 Stanford Medical School (Cell Biology Tree)
Patrick J. O'Brien grad student 2000 Stanford
Shu-ou Shan grad student 2000 Stanford
Matthew L. Peck grad student 2001 Stanford
Laura E. Bartley grad student 2002 Stanford
Katrin Karbstein grad student 2003 Stanford
Ivana N. Hughes grad student 2005 Stanford
Rhiju Das grad student 2001-2005 Department of Biochemistry Stanford University School of Medicine
Daniel A. Kraut grad student 2006 Stanford
Felix Muller-Plantiz grad student 2006 Stanford
Jesse G. Zalatan grad student 2008 Stanford
Paul A. Sigala grad student 2009 Stanford
Steve L. Bonilla grad student 2013-2019 Stanford
Jon Lorsch post-doc Stanford
Marcello Forconi post-doc 2003-2010 Stanford
Marcus Alexander post-doc 2009-2010 Stanford (Computational Biology Tree)
Lauren Danielle Hagler post-doc 2020-2024 Stanford Medical School

Collaborators

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George M. Giambasu collaborator
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Publications

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Du S, Kretsch RC, Parres-Gold J, et al. (2025) Conformational ensembles reveal the origins of serine protease catalysis. Science (New York, N.Y.). 387: eado5068
Shin JH, Cuevas LM, Roy R, et al. (2024) Exploring the energetic and conformational properties of the sequence space connecting naturally occurring RNA tetraloop receptor motifs. Rna (New York, N.Y.)
Ken ML, Roy R, Geng A, et al. (2023) RNA conformational propensities determine cellular activity. Nature
Shin JH, Bonilla SL, Denny SK, et al. (2023) Dissecting the energetic architecture within an RNA tertiary structural motif via high-throughput thermodynamic measurements. Proceedings of the National Academy of Sciences of the United States of America. 120: e2220485120
Sadée C, Hagler LD, Becker WR, et al. (2022) A comprehensive thermodynamic model for RNA binding by the Saccharomyces cerevisiae Pumilio protein PUF4. Nature Communications. 13: 4522
Bonilla SL, Denny SK, Shin JH, et al. (2021) High-throughput dissection of the thermodynamic and conformational properties of a ubiquitous class of RNA tertiary contact motifs. Proceedings of the National Academy of Sciences of the United States of America. 118
Shi H, Rangadurai A, Abou Assi H, et al. (2020) Rapid and accurate determination of atomistic RNA dynamic ensemble models using NMR and structure prediction. Nature Communications. 11: 5531
Jarmoskaite I, AlSadhan I, Vaidyanathan PP, et al. (2020) How to measure and evaluate binding affinities. Elife. 9
Zettl T, Shi X, Bonilla S, et al. (2020) The structural ensemble of a Holliday junction determined by X-ray scattering interference. Nucleic Acids Research
Gebala M, Herschlag D. (2019) Quantitative Studies of an RNA Duplex Electrostatics by Ion Counting. Biophysical Journal. 117: 1116-1124
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