| Year |
Citation |
Score |
| 2022 |
Lin SH, Zhao D, Deng V, Birdsall VK, Ho S, Buzovetsky O, Etson CM, Mukerji I. Integration Host Factor Binds DNA Holliday Junctions. International Journal of Molecular Sciences. 24. PMID 36614023 DOI: 10.3390/ijms24010580 |
0.734 |
|
| 2021 |
He W, Verhees GF, Bhagwat N, Yang Y, Kulkarni DS, Lombardo Z, Lahiri S, Roy P, Zhuo J, Dang B, Snyder A, Shastry S, Moezpoor M, Alocozy L, Lee KG, ... ... Mukerji I, et al. SUMO fosters assembly and functionality of the MutSγ complex to facilitate meiotic crossing over. Developmental Cell. PMID 34214491 DOI: 10.1016/j.devcel.2021.06.012 |
0.734 |
|
| 2020 |
Joshi M, Li Y, Lombardo Z, Hingorani M, Mukerji I. Exploring the Interaction of Msh2‐Msh6 with the Holliday Junction Through ATPase Activity The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.04514 |
0.724 |
|
| 2020 |
Lombardo Z, Lahiri S, Lakhani B, Hingorani MM, Beveridge DL, Mukerji I. Investigating the Role of Msh4-Msh5 ATPASE Activity During Homologous Recombination Biophysical Journal. 118: 73a. DOI: 10.1016/J.Bpj.2019.11.572 |
0.719 |
|
| 2019 |
Li Y, Lombardo Z, Joshi M, Hingorani MM, Mukerji I. Mismatch Recognition by Msh2-Msh6: Role of Structure and Dynamics. International Journal of Molecular Sciences. 20. PMID 31480444 DOI: 10.3390/Ijms20174271 |
0.753 |
|
| 2019 |
Zhao D, Mukerji I, Etson C. Establishing a Single-Molecule FRET System for Studying DNA-Protein Interactions Biophysical Journal. 116: 505a. DOI: 10.1016/J.Bpj.2018.11.2722 |
0.722 |
|
| 2018 |
Lahiri S, Li Y, Hingorani MM, Mukerji I. MutSγ-Induced DNA Conformational Changes Provide Insights into its Role in Meiotic Recombination. Biophysical Journal. PMID 30467025 DOI: 10.1016/J.Bpj.2018.10.029 |
0.665 |
|
| 2018 |
Lahiri S, Mukerji I. Homology Modeling and Structural Analysis of S. Cerevisiae Msh4 and Msh5 Provide Insight into DNA Binding and Specificity Biophysical Journal. 114: 85a. DOI: 10.1016/J.Bpj.2017.11.506 |
0.633 |
|
| 2017 |
Zhang Q, Lahiri S, Banerjee T, Sun Z, Oliver D, Mukerji I. Alignment of the protein substrate hairpin along the SecA two-helix finger primes protein transport in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. PMID 28798063 DOI: 10.1073/Pnas.1702201114 |
0.612 |
|
| 2017 |
Cote JM, Ramirez-Mondragon CA, Siegel ZS, Czyzyk DJ, Gao J, Sham YY, Mukerji I, Taylor EA. The Stories Tryptophans Tell: Exploring Protein Dynamics of Heptosyltransferase I from Escherichia coli. Biochemistry. PMID 28098447 DOI: 10.1021/Acs.Biochem.6B00850 |
0.374 |
|
| 2017 |
Savage RE, Wang W, Starr FW, Mukerji I. Investigation of the Melting Thermodynamics of a DNA 4-Way Junction: One Base at a Time Biophysical Journal. 112: 69a-70a. DOI: 10.1016/J.Bpj.2016.11.418 |
0.379 |
|
| 2016 |
Moreno A, Knee JL, Mukerji I. Photophysical Characterization of Enhanced 6-Methylisoxanthopterin Fluorescence in Duplex DNA. The Journal of Physical Chemistry. B. 120: 12232-12248. PMID 27934220 DOI: 10.1021/Acs.Jpcb.6B07369 |
0.333 |
|
| 2016 |
Litke JL, Li Y, Nocka LM, Mukerji I. Probing the Ion Binding Site in a DNA Holliday Junction Using Förster Resonance Energy Transfer (FRET). International Journal of Molecular Sciences. 17. PMID 26978349 DOI: 10.3390/Ijms17030366 |
0.341 |
|
| 2016 |
Wang W, Nocka LM, Wiemann BZ, Hinckley DM, Mukerji I, Starr FW. Holliday Junction Thermodynamics and Structure: Coarse-Grained Simulations and Experiments. Scientific Reports. 6: 22863. PMID 26971574 DOI: 10.1038/Srep22863 |
0.356 |
|
| 2016 |
Starr FW, Wang W, Nocka LM, Wiemann BZ, Hinckley DM, Mukerji I. Holliday Junction Thermodynamics and Structure: Comparisons of Coarse-Grained Simulations and Experiments Biophysical Journal. 110: 178a. DOI: 10.1016/J.Bpj.2015.11.992 |
0.365 |
|
| 2015 |
Lahiri S, Hingorani M, Mukerji I. 116 Binding dynamics of yeast MutS homologs Msh4-Msh5 with the Holliday junction. Journal of Biomolecular Structure & Dynamics. 33: 73. PMID 26103328 DOI: 10.1080/07391102.2015.1032749 |
0.611 |
|
| 2015 |
Lahiri S, Hingorani M, Mukerji I. Binding Dynamics of the Holliday Junction with Yeast MutS Homolog Msh4-Msh5 Biophysical Journal. 108: 70a. DOI: 10.1016/J.Bpj.2014.11.418 |
0.673 |
|
| 2015 |
Li Y, Hingorani M, Mukerji I. Enhanced Dynamics of Mismatched Base Pairs Associated with Msh2-Msh6 Recognition Biophysical Journal. 108: 70a. DOI: 10.1016/J.Bpj.2014.11.416 |
0.378 |
|
| 2015 |
Birdsall V, Deng V, Mukerji I. Characterization of IHF Binding to DNA Four-Way Junctions and Forks Biophysical Journal. 108: 401a. DOI: 10.1016/J.Bpj.2014.11.2197 |
0.387 |
|
| 2014 |
Li Y, Hingorani M, Mukerji I. Global and Local Conformation of Mismatched Duplex DNA Upon MSH2-MSH6 Binding Studied by Steady-State and Time-Resolved Fluorescence Biophysical Journal. 106: 691a. DOI: 10.1016/J.Bpj.2013.11.3822 |
0.395 |
|
| 2013 |
Auclair SM, Oliver DB, Mukerji I. Defining the solution state dimer structure of Escherichia coli SecA using Förster resonance energy transfer. Biochemistry. 52: 2388-401. PMID 23484952 DOI: 10.1021/Bi301217T |
0.382 |
|
| 2013 |
Li Y, Hingorani M, Mukerji I. Global and Local Conformational Studies of Mismatched Duplex DNA Upon Msh2-Msh6 Binding by Steady-State and Time-Resolved Fluorescence Biophysical Journal. 104: 76a. DOI: 10.1016/J.Bpj.2012.11.459 |
0.396 |
|
| 2013 |
Nocka LM, Mukerji I, Beveridge D, Wheatley L. Structure and Function of Holliday Junctions Complexed with Ions and HU Protein Biophysical Journal. 104: 75a. DOI: 10.1016/J.Bpj.2012.11.454 |
0.396 |
|
| 2013 |
Moreno AT, Mukerji I, Knee J. HU Induced Perturbation to the Structure and Dynamics of Flexible DNA Substrate Construct Biophysical Journal. 104: 422a. DOI: 10.1016/J.Bpj.2012.11.2349 |
0.412 |
|
| 2012 |
Husain B, Mukerji I, Cole JL. Analysis of high-affinity binding of protein kinase R to double-stranded RNA. Biochemistry. 51: 8764-70. PMID 23062027 DOI: 10.1021/Bi301226H |
0.334 |
|
| 2012 |
Moreno A, Knee J, Mukerji I. Applying 6-methylisoxanthopterin-enhanced fluorescence to examine protein-DNA interactions in the picomolar range. Biochemistry. 51: 6847-59. PMID 22849374 DOI: 10.1021/Bi300466D |
0.372 |
|
| 2012 |
Wheatley EG, Pieniazek SN, Mukerji I, Beveridge DL. Molecular dynamics of a DNA Holliday junction: the inverted repeat sequence d(CCGGTACCGG)â‚„. Biophysical Journal. 102: 552-60. PMID 22325278 DOI: 10.1016/J.Bpj.2011.11.4023 |
0.365 |
|
| 2012 |
Mukerji I, Vitoc CI, Litke J, Wheatley E, Buzovetsky O, Li Y, Beveridge DL. Structure of DNA Four-Way Junctions: Effect of Ions and Proteins Biophysical Journal. 102: 75a. DOI: 10.1016/J.Bpj.2011.11.440 |
0.399 |
|
| 2012 |
Moreno AT, Mukerji I, Knee J. Insight into the Mechanism of Hu-Induced DNA Bending Biophysical Journal. 102: 72a. DOI: 10.1016/J.Bpj.2011.11.421 |
0.401 |
|
| 2012 |
Wheatley E, Mukerji I, Beveridge DL. Structure Prediction of an Unusual Protein-DNA Complex Hu with a DNA Four-Way Junction Biophysical Journal. 102: 71a. DOI: 10.1016/J.Bpj.2011.11.414 |
0.411 |
|
| 2011 |
Ikuta T, Thatte HS, Tang JX, Mukerji I, Knee K, Bridges KR, Wang S, Montero-Huerta P, Joshi RM, Head CA. Nitric oxide reduces sickle hemoglobin polymerization: potential role of nitric oxide-induced charge alteration in depolymerization. Archives of Biochemistry and Biophysics. 510: 53-61. PMID 21457702 DOI: 10.1016/J.Abb.2011.03.013 |
0.701 |
|
| 2011 |
Vitoc CI, Mukerji I. HU binding to a DNA four-way junction probed by Förster resonance energy transfer. Biochemistry. 50: 1432-41. PMID 21230005 DOI: 10.1021/Bi1007589 |
0.412 |
|
| 2011 |
Litke J, Mukerji I. Probing the Ion-Binding Site of the Holliday Junction Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.1958 |
0.341 |
|
| 2011 |
Li Y, Mukerji I, Hingorani M. Investigation of the Binding Interaction of S. cerevisiae MutS Homologs MSH2-MSH6 and MSH4-MSH5 with Holliday Junctions Biophysical Journal. 100: 243a. DOI: 10.1016/J.Bpj.2010.12.1543 |
0.42 |
|
| 2011 |
Moreno AT, Mukerji I. HU Induced Perturbation to the Structure and Dynamics of a Flexible DNA Substrate Biophysical Journal. 100: 230a. DOI: 10.1016/J.Bpj.2010.12.1468 |
0.403 |
|
| 2010 |
Auclair SM, Moses JP, Musial-Siwek M, Kendall DA, Oliver DB, Mukerji I. Mapping of the signal peptide-binding domain of Escherichia coli SecA using Förster resonance energy transfer. Biochemistry. 49: 782-92. PMID 20025247 DOI: 10.1021/Bi901446R |
0.308 |
|
| 2010 |
Wang Y, Petty S, Trojanowski A, Knee K, Goulet D, Mukerji I, King J. Formation of amyloid fibrils in vitro from partially unfolded intermediates of human gammaC-crystallin. Investigative Ophthalmology & Visual Science. 51: 672-8. PMID 19684009 DOI: 10.1167/Iovs.09-3987 |
0.74 |
|
| 2010 |
Goulet DR, Knee KM, Mukerji I, King JA. Citrate Binding Stabilizes Human Gamma-Crystallin to Slow Unfolding and Inhibit Aggregation Biophysical Journal. 98: 614a. DOI: 10.1016/J.Bpj.2009.12.3350 |
0.763 |
|
| 2010 |
Auclair SM, Oliver DB, Mukerji I. Identification of the Escherichia Coli SecA Solution State Dimer Orientation using Forster Resonance Energy Transfer Biophysical Journal. 98: 499a. DOI: 10.1016/J.Bpj.2009.12.2717 |
0.301 |
|
| 2010 |
Moreno AT, Mukerji I, Knee J. 6MI Enhanced Fluorescence in a Specific DNA Pentamer Sequence Biophysical Journal. 98: 42a. DOI: 10.1016/J.Bpj.2009.12.242 |
0.309 |
|
| 2009 |
Knee KM, Mukerji I. Real time monitoring of sickle cell hemoglobin fiber formation by UV resonance Raman spectroscopy. Biochemistry. 48: 9903-11. PMID 19778007 DOI: 10.1021/Bi901352M |
0.716 |
|
| 2009 |
Sarkar T, Petrov AS, Vitko JR, Santai CT, Harvey SC, Mukerji I, Hud NV. Integration host factor (IHF) dictates the structure of polyamine-DNA condensates: implications for the role of IHF in the compaction of bacterial chromatin. Biochemistry. 48: 667-75. PMID 19132923 DOI: 10.1021/Bi8019965 |
0.362 |
|
| 2009 |
Bhattacharya A, Kondo M, Mukerji I. Fibril formation of Aβ (10-35) studied by UV resonance Raman Spectroscopy Biophysical Journal. 96: 90a-91a. DOI: 10.1016/J.Bpj.2008.12.375 |
0.31 |
|
| 2009 |
Moreno AT, Knee J, Mukerji I. Observation of Oligonucleotide Dynamics by means of Fluorescent Nucleoside analog 6MI Biophysical Journal. 96: 347a-348a. DOI: 10.1016/J.Bpj.2008.12.1747 |
0.36 |
|
| 2008 |
Knee KM, Dixit SB, Aitken CE, Ponomarev S, Beveridge DL, Mukerji I. Spectroscopic and molecular dynamics evidence for a sequential mechanism for the A-to-B transition in DNA. Biophysical Journal. 95: 257-72. PMID 18326653 DOI: 10.1529/Biophysj.107.117606 |
0.721 |
|
| 2007 |
Vitko J, Rujan I, Androga L, Mukerji I, Bolton PH. Molecular beacon-equilibrium cyclization detection of DNA-protein complexes. Biophysical Journal. 93: 3210-7. PMID 17631534 DOI: 10.1529/Biophysj.106.097642 |
0.362 |
|
| 2007 |
Knee KM, Roden CK, Flory MR, Mukerji I. The role of beta93 Cys in the inhibition of Hb S fiber formation. Biophysical Chemistry. 127: 181-93. PMID 17350155 DOI: 10.1016/J.Bpc.2007.02.002 |
0.714 |
|
| 2007 |
Sarkar T, Vitoc I, Mukerji I, Hud NV. Bacterial protein HU dictates the morphology of DNA condensates produced by crowding agents and polyamines. Nucleic Acids Research. 35: 951-61. PMID 17259223 DOI: 10.1093/Nar/Gkl1093 |
0.363 |
|
| 2006 |
Augustyn KE, Wojtuszewski K, Hawkins ME, Knutson JR, Mukerji I. Examination of the premelting transition of DNA A-tracts using a fluorescent adenosine analogue. Biochemistry. 45: 5039-47. PMID 16605272 DOI: 10.1021/Bi0518343 |
0.317 |
|
| 2004 |
Wojtuszewski K, Mukerji I. The HU-DNA binding interaction probed with UV resonance Raman spectroscopy: structural elements of specificity. Protein Science : a Publication of the Protein Society. 13: 2416-28. PMID 15322284 DOI: 10.1110/Ps.04730204 |
0.413 |
|
| 2004 |
Arthanari H, Wojtuszewski K, Mukerji I, Bolton PH. Effects of HU binding on the equilibrium cyclization of mismatched, curved, and normal DNA. Biophysical Journal. 86: 1625-31. PMID 14990489 DOI: 10.1016/S0006-3495(04)74230-7 |
0.393 |
|
| 2003 |
Ding H, Mukerji I, Oliver D. Nucleotide and phospholipid-dependent control of PPXD and C-domain association for SecA ATPase. Biochemistry. 42: 13468-75. PMID 14621992 DOI: 10.1021/Bi035099B |
0.312 |
|
| 2003 |
Ding H, Hunt JF, Mukerji I, Oliver D. Bacillus subtilis SecA ATPase exists as an antiparallel dimer in solution. Biochemistry. 42: 8729-38. PMID 12873133 DOI: 10.1021/Bi0342057 |
0.366 |
|
| 2003 |
Wojtuszewski K, Mukerji I. HU binding to bent DNA: a fluorescence resonance energy transfer and anisotropy study. Biochemistry. 42: 3096-104. PMID 12627977 DOI: 10.1021/Bi0264014 |
0.37 |
|
| 2002 |
Mukerji I, Williams AP. UV resonance Raman and circular dichroism studies of a DNA duplex containing an A(3)T(3) tract: evidence for a premelting transition and three-centered H-bonds. Biochemistry. 41: 69-77. PMID 11772004 DOI: 10.1021/Bi010918I |
0.317 |
|
| 2001 |
Wojtuszewski K, Hawkins ME, Cole JL, Mukerji I. HU binding to DNA: evidence for multiple complex formation and DNA bending. Biochemistry. 40: 2588-98. PMID 11327882 DOI: 10.1021/Bi002382R |
0.384 |
|
| 2001 |
Ding H, Mukerji I, Oliver D. Lipid and signal peptide-induced conformational changes within the C-domain of Escherichia coli SecA protein Biochemistry. 40: 1835-1843. PMID 11327846 DOI: 10.1021/Bi002058W |
0.331 |
|
| 2000 |
Schmidt M, Ding H, Ramamurthy V, Mukerji I, Oliver D. Nucleotide binding activity of SecA homodimer is conformationally regulated by temperature and altered by prlD and azi mutations Journal of Biological Chemistry. 275: 15440-15448. PMID 10747939 DOI: 10.1074/Jbc.M000605200 |
0.346 |
|
| 2000 |
Sokolov L, Mukerji I. Structure of sickle cell hemoglobin fibers probed with UV resonance Raman spectroscopy Journal of Physical Chemistry B. 104: 10835-10843. DOI: 10.1021/Jp000488Q |
0.302 |
|
| 1997 |
Chan SS, Austin RH, Mukerji I, Spiro TG. Temperature-dependent ultraviolet resonance Raman spectroscopy of the premelting state of dA.dT DNA. Biophysical Journal. 72: 1512-20. PMID 9083657 DOI: 10.1016/S0006-3495(97)78799-X |
0.309 |
|
| 1995 |
Latimer MJ, DeRose VJ, Mukerji I, Yachandra VK, Sauer K, Klein MP. Evidence for the proximity of calcium to the manganese cluster of photosystem II: determination by X-ray absorption spectroscopy. Biochemistry. 34: 10898-909. PMID 7662671 DOI: 10.1021/Bi00034A024 |
0.683 |
|
| 1995 |
Jayaraman V, Rodgers KR, Mukerji I, Spiro TG. Hemoglobin allostery: resonance Raman spectroscopy of kinetic intermediates. Science (New York, N.Y.). 269: 1843-8. PMID 7569921 DOI: 10.1126/Science.7569921 |
0.319 |
|
| 1995 |
DeRose VJ, Latimer MJ, Zimmermann JL, Mukerji I, Yachandra VK, Sauer K, Klein MP. Fluoride substitution in the Mn cluster from Photosystem II: EPR and X-ray absorption spectroscopy studies Chemical Physics. 194: 443-459. DOI: 10.1016/0301-0104(95)00043-N |
0.646 |
|
| 1994 |
Mukerji I, Andrews JC, DeRose VJ, Latimer MJ, Yachandra VK, Sauer K, Klein MP. Orientation of the oxygen-evolving manganese complex in a photosystem II membrane preparation: an X-ray absorption spectroscopy study. Biochemistry. 33: 9712-21. PMID 8068650 DOI: 10.1021/Bi00198A042 |
0.687 |
|
| 1994 |
DeRose VJ, Mukerji I, Latimer MJ, Yachandra VK, Sauer K, Klein MP. Comparison of the manganese oxygen-evolving complex in photosystem II of spinach and Synechococcus sp. with multinuclear manganese model compounds by X-ray absorption spectroscopy Journal of the American Chemical Society. 116: 5239-5249. DOI: 10.1021/Ja00091A031 |
0.683 |
|
| 1993 |
Yachandra VK, DeRose VJ, Latimer MJ, Mukerji I, Sauer K, Klein MP. Where plants make oxygen: a structural model for the photosynthetic oxygen-evolving manganese cluster. Science (New York, N.Y.). 260: 675-9. PMID 8480177 DOI: 10.1126/Science.8480177 |
0.687 |
|
| 1993 |
Yachandra VK, Derose VJ, Latimer MJ, Mukerji I, Sauer K, Klein MP. A structural model for the photosynthetic oxygen evolving manganese complex Japanese Journal of Applied Physics. 32: 523-526. DOI: 10.7567/Jjaps.32S2.523 |
0.685 |
|
| 1993 |
Mukerji I, Sauer K. Energy transfer dynamics of an isolated light harvesting complex of Photosystem I from spinach: time-resolved fluorescence measurements at 295 K and 77 K Bba - Bioenergetics. 1142: 311-320. DOI: 10.1016/0005-2728(93)90159-D |
0.509 |
|
| 1991 |
Klein MP, Yachandra VK, DeRose VJ, Mukerji I, Latimer MJ, Sauer K. A structural model for the photosynthetic oxygen evolving manganese cluster Journal of Inorganic Biochemistry. 43: 363. DOI: 10.1016/0162-0134(91)84349-E |
0.675 |
|
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