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Marc Niethammer - Publications

Affiliations: 
Computer Science University of North Carolina, Chapel Hill, Chapel Hill, NC 
Area:
Computer Science, Radiology
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60 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Ding Z, Fleishman G, Yang X, Thompson P, Kwitt R, Niethammer M. Fast predictive simple geodesic regression. Medical Image Analysis. 56: 193-209. PMID 31252162 DOI: 10.1016/J.Media.2019.06.003  0.401
2018 Han X, Kwitt R, Aylward S, Bakas S, Menze B, Asturias A, Vespa P, Van Horn J, Niethammer M. Brain extraction from normal and pathological images: A joint PCA/Image-Reconstruction approach. Neuroimage. PMID 29730494 DOI: 10.1016/J.Neuroimage.2018.04.073  0.359
2017 Niethammer M, Pohl KM, Janoos F, Wells WM. ACTIVE MEAN FIELDS FOR PROBABILISTIC IMAGE SEGMENTATION: CONNECTIONS WITH CHAN-VESE AND RUDIN-OSHER-FATEMI MODELS. Siam Journal On Imaging Sciences. 10: 1069-1103. PMID 29051796 DOI: 10.1137/16M1058601  0.613
2017 Yang X, Kwitt R, Styner M, Niethammer M. Quicksilver: Fast predictive image registration - A deep learning approach. Neuroimage. PMID 28705497 DOI: 10.1016/J.Neuroimage.2017.07.008  0.329
2017 Young JT, Shi Y, Niethammer M, Grauer M, Coe CL, Lubach GR, Davis B, Budin F, Knickmeyer RC, Alexander AL, Styner MA. The UNC-Wisconsin Rhesus Macaque Neurodevelopment Database: A Structural MRI and DTI Database of Early Postnatal Development. Frontiers in Neuroscience. 11: 29. PMID 28210206 DOI: 10.3389/Fnins.2017.00029  0.706
2015 Lyu I, Kim SH, Seong JK, Yoo SW, Evans A, Shi Y, Sanchez M, Niethammer M, Styner MA. Robust estimation of group-wise cortical correspondence with an application to macaque and human neuroimaging studies. Frontiers in Neuroscience. 9: 210. PMID 26113807 DOI: 10.3389/Fnins.2015.00210  0.382
2015 Liu X, Niethammer M, Kwitt R, Singh N, McCormick M, Aylward S. Low-rank Atlas Image Analyses in the Presence of Pathologies. Ieee Transactions On Medical Imaging. PMID 26111390 DOI: 10.1109/Tmi.2015.2448556  0.377
2015 Singh N, Vialard FX, Niethammer M. Splines for diffeomorphisms. Medical Image Analysis. 25: 56-71. PMID 25980676 DOI: 10.1016/J.Media.2015.04.012  0.425
2015 Hong Y, Gao Y, Niethammer M, Bouix S. Shape analysis based on depth-ordering. Medical Image Analysis. PMID 25980389 DOI: 10.1016/J.Media.2015.04.004  0.645
2015 Vicory J, Couture HD, Thomas NE, Borland D, Marron JS, Woosley J, Niethammer M. Appearance normalization of histology slides. Computerized Medical Imaging and Graphics : the Official Journal of the Computerized Medical Imaging Society. 43: 89-98. PMID 25863518 DOI: 10.1016/J.Compmedimag.2015.03.005  0.357
2015 Huang C, Shan L, Charles C, Wolfgang W, Niethammer M, Zhu H. Diseased Region Detection of Longitudinal Knee Magnetic Resonance Imaging Data. Ieee Transactions On Medical Imaging. PMID 25823031 DOI: 10.1109/Tmi.2015.2415675  0.393
2015 Tighe J, Niethammer M, Lazebnik S. Scene Parsing with Object Instance Inference Using Regions and Per-exemplar Detectors International Journal of Computer Vision. 112: 150-171. DOI: 10.1007/S11263-014-0778-5  0.343
2014 Hong Y, Gao Y, Niethammer M, Bouix S. Depth-based shape-analysis. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 17: 17-24. PMID 25320777  0.618
2014 Shan L, Zach C, Charles C, Niethammer M. Automatic atlas-based three-label cartilage segmentation from MR knee images. Medical Image Analysis. 18: 1233-46. PMID 25128683 DOI: 10.1016/J.Media.2014.05.008  0.389
2014 Zhang P, Niethammer M, Shen D, Yap PT. Large deformation diffeomorphic registration of diffusion-weighted imaging data. Medical Image Analysis. 18: 1290-8. PMID 25106710 DOI: 10.1016/J.Media.2014.06.012  0.416
2014 Hong Y, Davis B, Marron JS, Kwitt R, Singh N, Kimbell JS, Pitkin E, Superfine R, Davis SD, Zdanski CJ, Niethammer M. Statistical atlas construction via weighted functional boxplots. Medical Image Analysis. 18: 684-98. PMID 24747271 DOI: 10.1016/J.Media.2014.03.001  0.375
2014 Kwon D, Niethammer M, Akbari H, Bilello M, Davatzikos C, Pohl KM. PORTR: Pre-operative and post-recurrence brain tumor registration. Ieee Transactions On Medical Imaging. 33: 651-67. PMID 24595340 DOI: 10.1109/Tmi.2013.2293478  0.587
2014 Cao T, Zach C, Modla S, Powell D, Czymmek K, Niethammer M. Multi-modal registration for correlative microscopy using image analogies. Medical Image Analysis. 18: 914-26. PMID 24387943 DOI: 10.1016/J.Media.2013.12.005  0.359
2014 Hong Y, Gao Y, Niethammer M, Bouix S. Depth-based shape-analysis Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8675: 17-24. DOI: 10.1007/978-3-319-10443-0_3  0.583
2014 Wassermann D, Toews M, Niethammer M, Wells W. Probabilistic diffeomorphic registration: Representing uncertainty Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8545: 72-82. DOI: 10.1007/978-3-319-08554-8_8  0.661
2013 Lyu I, Kim SH, Seong JK, Yoo SW, Evans AC, Shi Y, Sanchez M, Niethammer M, Styner M. Cortical Correspondence via Sulcal Curve-Constrained Spherical Registration with Application to Macaque Studies. Proceedings of Spie--the International Society For Optical Engineering. 8669. PMID 24357916 DOI: 10.1117/12.2006459  0.395
2013 Pace DF, Aylward SR, Niethammer M. A locally adaptive regularization based on anisotropic diffusion for deformable image registration of sliding organs. Ieee Transactions On Medical Imaging. 32: 2114-26. PMID 23899632 DOI: 10.1109/Tmi.2013.2274777  0.381
2013 Csapo I, Davis B, Shi Y, Sanchez M, Styner M, Niethammer M. Longitudinal image registration with temporally-dependent image similarity measure. Ieee Transactions On Medical Imaging. 32: 1939-51. PMID 23846465 DOI: 10.1109/Tmi.2013.2269814  0.371
2013 Niethammer M, Zach C. Segmentation with area constraints Medical Image Analysis. 17: 101-112. PMID 23084504 DOI: 10.1016/J.Media.2012.09.002  0.364
2013 Shi Y, Short SJ, Knickmeyer RC, Wang J, Coe CL, Niethammer M, Gilmore JH, Zhu H, Styner MA. Diffusion tensor imaging-based characterization of brain neurodevelopment in primates. Cerebral Cortex (New York, N.Y. : 1991). 23: 36-48. PMID 22275483 DOI: 10.1093/Cercor/Bhr372  0.357
2012 Lee HP, Foskey M, Niethammer M, Krajcevski P, Lin M. Simulation-based joint estimation of body deformation and elasticity parameters for medical image analysis. Ieee Transactions On Medical Imaging. 31: 2156-2168. PMID 22893381 DOI: 10.1109/Tmi.2012.2212450  0.367
2012 Miedema J, Marron JS, Niethammer M, Borland D, Woosley J, Coposky J, Wei S, Reisner H, Thomas NE. Image and statistical analysis of melanocytic histology. Histopathology. 61: 436-44. PMID 22687043 DOI: 10.1111/J.1365-2559.2012.04229.X  0.32
2011 Lee J, Ehlers C, Crews F, Niethammer M, Budin F, Paniagua B, Sulik K, Johns J, Styner M, Oguz I. Automatic cortical thickness analysis on rodent brain. Proceedings of Spie--the International Society For Optical Engineering. 7962: 7962481-79624811. PMID 21909228 DOI: 10.1117/12.878305  0.702
2011 Walterfang M, Looi JC, Styner M, Walker RH, Danek A, Niethammer M, Evans A, Kotschet K, Rodrigues GR, Hughes A, Velakoulis D. Shape alterations in the striatum in chorea-acanthocytosis. Psychiatry Research. 192: 29-36. PMID 21377843 DOI: 10.1016/J.Pscychresns.2010.10.006  0.31
2011 Looi JC, Walterfang M, Styner M, Niethammer M, Svensson LA, Lindberg O, Ostberg P, Botes L, Orndahl E, Chua P, Velakoulis D, Wahlund LO. Shape analysis of the neostriatum in subtypes of frontotemporal lobar degeneration: neuroanatomically significant regional morphologic change. Psychiatry Research. 191: 98-111. PMID 21237621 DOI: 10.1016/J.Pscychresns.2010.09.014  0.355
2011 Vachet C, Cody Hazlett H, Niethammer M, Oguz I, Cates J, Whitaker R, Piven J, Styner M. Group-wise automatic mesh-based analysis of cortical thickness Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7962. DOI: 10.1117/12.878300  0.357
2011 Li W, Ibanez L, Gelas A, Yeo BTT, Niethammer M, Andreasen NC, Magnotta VA. An automated pipeline for cortical surface generation and registration of the cerebral cortex Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7962. DOI: 10.1117/12.876509  0.318
2011 Kabul I, Pizer SM, Rosenman J, Niethammer M. An optimal control approach for texture metamorphosis Computer Graphics Forum. 30: 2341-2353. DOI: 10.1111/J.1467-8659.2011.02067.X  0.336
2010 Karasev P, Malcolm JG, Niethammer M, Kikinis R, Tannenbaum AR. User-driven 3D mesh region targeting Proceedings of Spie. 7625: 762513. DOI: 10.1117/12.845661  0.554
2010 Shan L, Zach C, Styner M, Charles C, Niethammer M. Automatic bone segmentation and alignment from MR knee images Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7623. DOI: 10.1117/12.841167  0.375
2009 Reuter M, Wolter FE, Shenton M, Niethammer M. Laplace-Beltrami Eigenvalues and Topological Features of Eigenfunctions for Statistical Shape Analysis. Computer Aided Design. 41: 739-755. PMID 20161035 DOI: 10.1016/j.cad.2009.02.007  0.462
2009 Gerardin E, Chételat G, Chupin M, Cuingnet R, Desgranges B, Kim HS, Niethammer M, Dubois B, Lehéricy S, Garnero L, Eustache F, Colliot O. Multidimensional classification of hippocampal shape features discriminates Alzheimer's disease and mild cognitive impairment from normal aging. Neuroimage. 47: 1476-86. PMID 19463957 DOI: 10.1016/J.Neuroimage.2009.05.036  0.322
2009 Levitt JJ, Styner M, Niethammer M, Bouix S, Koo MS, Voglmaier MM, Dickey CC, Niznikiewicz MA, Kikinis R, McCarley RW, Shenton ME. Shape abnormalities of caudate nucleus in schizotypal personality disorder. Schizophrenia Research. 110: 127-39. PMID 19328654 DOI: 10.1016/J.Schres.2008.11.012  0.737
2009 Voineskos AN, O'Donnell LJ, Lobaugh NJ, Markant D, Ameis SH, Niethammer M, Mulsant BH, Pollock BG, Kennedy JL, Westin CF, Shenton ME. Quantitative examination of a novel clustering method using magnetic resonance diffusion tensor tractography. Neuroimage. 45: 370-6. PMID 19159690 DOI: 10.25011/Cim.V31I4.4830  0.613
2009 Niethammer M, Zach C, Melonakos J, Tannenbaum A. Near-tubular fiber bundle segmentation for diffusion weighted imaging: segmentation through frame reorientation. Neuroimage. 45: S123-32. PMID 19101640 DOI: 10.1016/J.Neuroimage.2008.11.001  0.386
2009 Voineskos AN, O'Donnell LJ, Lobaugh NJ, Markant D, Ameis SH, Niethammer M, Mulsant BH, Pollock BG, Kennedy JL, Westin CF, Shenton ME. Quantitative examination of a novel clustering method using magnetic resonance diffusion tensor tractography Neuroimage. 45: 370-376. DOI: 10.1016/j.neuroimage.2008.12.028  0.536
2009 Reuter M, Wolter FE, Shenton M, Niethammer M. Laplace-Beltrami eigenvalues and topological features of eigenfunctions for statistical shape analysis Cad Computer Aided Design. 41: 739-755. DOI: 10.1016/J.Cad.2009.02.007  0.525
2008 Aja-Fernandez S, Niethammer M, Kubicki M, Shenton ME, Westin CF. Restoration of DWI data using a Rician LMMSE estimator. Ieee Transactions On Medical Imaging. 27: 1389-403. PMID 18815091 DOI: 10.1109/Tmi.2008.920609  0.617
2008 Niethammer M, Vela PA, Tannenbaum A. Geometric observers for dynamically evolving curves. Ieee Transactions On Pattern Analysis and Machine Intelligence. 30: 1093-108. PMID 18421113 DOI: 10.1109/Tpami.2008.28  0.329
2008 Niethammer M, Estepar RS, Bouix S, Shenton M, Westin CF. On diffusion tensor estimation. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 6707-10. PMID 17959492 DOI: 10.1109/iembs.2006.260927  0.602
2008 Rathi Y, Dambreville S, Niethammer M, Malcolm J, Levitt J, Shenton ME, Tannenbaum A. Segmenting images analytically in shape space Progress in Biomedical Optics and Imaging - Proceedings of Spie. 6914. DOI: 10.1117/12.769511  0.679
2007 Melonakos J, Niethammer M, Mohan V, Kubicki M, Miller JV, Tannenbaum A. Locally-Constrained Region-Based Methods for DW-MRI Segmentation. Proceedings / Ieee International Conference On Computer Vision. Ieee International Conference On Computer Vision. 1-8. PMID 23857521 DOI: 10.1109/ICCV.2007.4409167  0.507
2007 Nain D, Styner M, Niethammer M, Levitt JJ, Shenton ME, Gerig G, Bobick A, Tannenbaum A. STATISTICAL SHAPE ANALYSIS OF BRAIN STRUCTURES USING SPHERICAL WAVELETS. Proceedings / Ieee International Symposium On Biomedical Imaging: From Nano to Macro. Ieee International Symposium On Biomedical Imaging. 4: 209-212. PMID 19888446 DOI: 10.1109/ISBI.2007.356825  0.442
2007 Niethammer M, Reuter M, Wolter FE, Bouix S, Peinecke N, Koo MS, Shenton ME. Global medical shape analysis using the Laplace-Beltrami spectrum. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 10: 850-7. PMID 18051138  0.732
2007 Niethammer M, Bouix S, Aja-Fernández S, Westin CF, Shenton ME. Outlier rejection for diffusion weighted imaging. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 10: 161-8. PMID 18051055  0.617
2007 Melonakos J, Mohan V, Niethammer M, Smith K, Kubicki M, Tannenbaum A. Finsler tractography for white matter connectivity analysis of the cingulum bundle. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 10: 36-43. PMID 18051041 DOI: 10.1007/978-3-540-75757-3_5  0.514
2007 Mohan V, Melonakos J, Tannenbaum A, Niethammer M, Kubicki M. Finsler level set segmentation for imagery in oriented domains Bmvc 2007 - Proceedings of the British Machine Vision Conference 2007. DOI: 10.5244/C.21.46  0.431
2007 Reuter M, Niethammer M, Wolter FE, Bouix S, Shenton M. Global medical shape analysis using the volumetric Laplace spectrum Proceedings - 2007 International Conference On Cyberworlds, Cw'07. 417-426. DOI: 10.1109/CW.2007.39  0.636
2006 Niethammer M, Tannenbaum A, Angenent S. Dynamic Active Contours for Visual Tracking. Ieee Transactions On Automatic Control. 51: 562-579. PMID 23729836 DOI: 10.1109/Tac.2006.872837  0.318
2006 Niethammer M, San Jose Estepar R, Bouix S, Shenton M, Westin CF. On diffusion tensor estimation Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Conference. 2622-2625. PMID 17946125 DOI: 10.1109/IEMBS.2006.259826  0.602
2006 Niethammer M, Bouix S, Westin CF, Shenton ME. Fiber bundle estimation and parameterization. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 9: 252-9. PMID 17354779  0.546
2006 Niethammer M, Kalies WD, Mischaikow K, Tannenbaum A. On the detection of simple points in higher dimensions using cubical homology. Ieee Transactions On Image Processing : a Publication of the Ieee Signal Processing Society. 15: 2462-9. PMID 16900699 DOI: 10.1109/Tip.2006.877309  0.337
2006 Kotte O, Niethammer M, Jacobs LJ. Lamb wave characterization by differential reassignment and non-linear anisotropic diffusion Ndt and E International. 39: 96-105. DOI: 10.1016/J.Ndteint.2005.08.001  0.314
2005 Niethammer M, Vela PA, Tannenbaum A. On the Evolution of Vector Distance Functions of Closed Curves. International Journal of Computer Vision. 65: 5-27. PMID 23700357 DOI: 10.1007/S11263-005-3849-9  0.302
2004 Niethammer M, Betelu S, Sapiro G, Tannenbaum A, Giblin PJ. Area-Based Medial Axis of Planar Curves. International Journal of Computer Vision. 60: 203-224. PMID 23710110 DOI: 10.1023/B:Visi.0000036835.28674.D0  0.334
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