| Year |
Citation |
Score |
| 2024 |
Werner A, Kanhere A, Wahlestedt C, Mattick JS. Natural antisense transcripts as versatile regulators of gene expression. Nature Reviews. Genetics. PMID 38632496 DOI: 10.1038/s41576-024-00723-z |
0.428 |
|
| 2023 |
Mattick JS. A Kuhnian revolution in molecular biology: Most genes in complex organisms express regulatory RNAs. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. e2300080. PMID 37318305 DOI: 10.1002/bies.202300080 |
0.33 |
|
| 2023 |
Enguita FJ, Leitão AL, Mattick JS. RNA Regulatory Networks 2.0. International Journal of Molecular Sciences. 24. PMID 37240347 DOI: 10.3390/ijms24109001 |
0.332 |
|
| 2023 |
Mattick JS, Amaral PP, Carninci P, Carpenter S, Chang HY, Chen LL, Chen R, Dean C, Dinger ME, Fitzgerald KA, Gingeras TR, Guttman M, Hirose T, Huarte M, Johnson R, et al. Long non-coding RNAs: definitions, functions, challenges and recommendations. Nature Reviews. Molecular Cell Biology. PMID 36596869 DOI: 10.1038/s41580-022-00566-8 |
0.452 |
|
| 2022 |
Begik O, Diensthuber G, Liu H, Delgado-Tejedor A, Kontur C, Niazi AM, Valen E, Giraldez AJ, Beaudoin JD, Mattick JS, Novoa EM. Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing. Nature Methods. PMID 36536091 DOI: 10.1038/s41592-022-01714-w |
0.378 |
|
| 2022 |
Mattick JS. RNA out of the mist. Trends in Genetics : Tig. PMID 36528415 DOI: 10.1016/j.tig.2022.11.001 |
0.434 |
|
| 2022 |
Begik O, Mattick JS, Novoa EM. Exploring the epitranscriptome by native RNA sequencing. Rna (New York, N.Y.). PMID 36104106 DOI: 10.1261/rna.079404.122 |
0.371 |
|
| 2022 |
Wei W, Zhao Q, Wang Z, Liau WS, Basic D, Ren H, Marshall PR, Zajaczkowski EL, Leighton LJ, Madugalle SU, Musgrove M, Periyakaruppiah A, Shi J, Zhang J, Mattick JS, et al. ADRAM is an experience-dependent long noncoding RNA that drives fear extinction through a direct interaction with the chaperone protein 14-3-3. Cell Reports. 38: 110546. PMID 35320727 DOI: 10.1016/j.celrep.2022.110546 |
0.617 |
|
| 2022 |
Mercer TR, Munro T, Mattick JS. The potential of long noncoding RNA therapies. Trends in Pharmacological Sciences. PMID 35153075 DOI: 10.1016/j.tips.2022.01.008 |
0.386 |
|
| 2021 |
Dey P, Mattick JS. High frequency of intron retention and clustered H3K4me3-marked nucleosomes in short first introns of human long non-coding RNAs. Epigenetics & Chromatin. 14: 45. PMID 34579770 DOI: 10.1186/s13072-021-00419-2 |
0.322 |
|
| 2021 |
Werner A, Clark JE, Samaranayake C, Casement J, Zinad HS, Sadeq S, Al-Hashimi S, Smith M, Kotaja N, Mattick JS. Widespread formation of double-stranded RNAs in testis. Genome Research. PMID 34158368 DOI: 10.1101/gr.265603.120 |
0.372 |
|
| 2021 |
Begik O, Lucas MC, Pryszcz LP, Ramirez JM, Medina R, Milenkovic I, Cruciani S, Liu H, Vieira HGS, Sas-Chen A, Mattick JS, Schwartz S, Novoa EM. Quantitative profiling of pseudouridylation dynamics in native RNAs with nanopore sequencing. Nature Biotechnology. PMID 33986546 DOI: 10.1038/s41587-021-00915-6 |
0.358 |
|
| 2021 |
Jonkhout N, Cruciani S, Santos Vieira HG, Tran J, Liu H, Liu G, Pickford R, Kaczorowski D, Franco GR, Vauti F, Camacho N, Abedini SS, Najmabadi H, Ribas de Pouplana L, Christ D, ... ... Mattick JS, et al. Subcellular relocalization and nuclear redistribution of the RNA methyltransferases TRMT1 and TRMT1L upon neuronal activation. Rna Biology. PMID 33499731 DOI: 10.1080/15476286.2021.1881291 |
0.371 |
|
| 2021 |
Chung M, Adkins RS, Mattick JSA, Bradwell KR, Shetty AC, Sadzewicz L, Tallon LJ, Fraser CM, Rasko DA, Mahurkar A, Dunning Hotopp JC. FADU: a Quantification Tool for Prokaryotic Transcriptomic Analyses. Msystems. 6. PMID 33436511 DOI: 10.1128/mSystems.00917-20 |
0.354 |
|
| 2020 |
Begik O, Lucas MC, Liu H, Ramirez JM, Mattick JS, Novoa EM. Integrative analyses of the RNA modification machinery reveal tissue- and cancer-specific signatures. Genome Biology. 21: 97. PMID 32375858 DOI: 10.1186/S13059-020-02009-Z |
0.362 |
|
| 2019 |
Liu H, Begik O, Lucas MC, Ramirez JM, Mason CE, Wiener D, Schwartz S, Mattick JS, Smith MA, Novoa EM. Accurate detection of mA RNA modifications in native RNA sequences. Nature Communications. 10: 4079. PMID 31501426 DOI: 10.1038/S41467-019-11713-9 |
0.346 |
|
| 2019 |
Hardwick SA, Bassett SD, Kaczorowski D, Blackburn J, Barton K, Bartonicek N, Carswell SL, Tilgner HU, Loy C, Halliday G, Mercer TR, Smith MA, Mattick JS. Targeted, High-Resolution RNA Sequencing of Non-coding Genomic Regions Associated With Neuropsychiatric Functions. Frontiers in Genetics. 10: 309. PMID 31031799 DOI: 10.3389/fgene.2019.00309 |
0.423 |
|
| 2018 |
Mattick JS. The State of Long Non-Coding RNA Biology. Non-Coding Rna. 4. PMID 30103474 DOI: 10.3390/ncrna4030017 |
0.44 |
|
| 2018 |
Mladenova D, Barry G, Konen LM, Pineda SS, Guennewig B, Avesson L, Zinn R, Schonrock N, Bitar M, Jonkhout N, Crumlish L, Kaczorowski DC, Gong A, Pinese M, Franco GR, ... ... Mattick JS, et al. Adar3 Is Involved in Learning and Memory in Mice. Frontiers in Neuroscience. 12: 243. PMID 29719497 DOI: 10.3389/Fnins.2018.00243 |
0.435 |
|
| 2018 |
Deveson IW, Brunck ME, Blackburn J, Tseng E, Hon T, Clark TA, Clark MB, Crawford J, Dinger ME, Nielsen LK, Mattick JS, Mercer TR. Universal Alternative Splicing of Noncoding Exons. Cell Systems. PMID 29396323 DOI: 10.1016/j.cels.2017.12.005 |
0.442 |
|
| 2017 |
Smith MA, Seemann SE, Quek XC, Mattick JS. DotAligner: identification and clustering of RNA structure motifs. Genome Biology. 18: 244. PMID 29284541 DOI: 10.1186/s13059-017-1371-3 |
0.33 |
|
| 2017 |
Jonkhout N, Tran J, Smith MA, Schonrock N, Mattick JS, Novoa EM. The RNA modification landscape in human disease. Rna (New York, N.Y.). PMID 28855326 DOI: 10.1261/Rna.063503.117 |
0.375 |
|
| 2017 |
Deveson IW, Hardwick SA, Mercer TR, Mattick JS. The Dimensions, Dynamics, and Relevance of the Mammalian Noncoding Transcriptome. Trends in Genetics : Tig. PMID 28535931 DOI: 10.1016/j.tig.2017.04.004 |
0.438 |
|
| 2017 |
Novoa EM, Mason CE, Mattick JS. Charting the unknown epitranscriptome. Nature Reviews. Molecular Cell Biology. PMID 28488699 DOI: 10.1038/Nrm.2017.49 |
0.355 |
|
| 2017 |
Barry G, Briggs JA, Hwang DW, Nayler SP, Fortuna PR, Jonkhout N, Dachet F, Maag JL, Mestdagh P, Singh EM, Avesson L, Kaczorowski DC, Ozturk E, Jones NC, Vetter I, ... ... Mattick JS, et al. The long non-coding RNA NEAT1 is responsive to neuronal activity and is associated with hyperexcitability states. Scientific Reports. 7: 40127. PMID 28054653 DOI: 10.1038/srep40127 |
0.318 |
|
| 2017 |
Smith MA, Mattick JS. Structural and Functional Annotation of Long Noncoding RNAs. Methods in Molecular Biology (Clifton, N.J.). 1526: 65-85. PMID 27896736 DOI: 10.1007/978-1-4939-6613-4_4 |
0.409 |
|
| 2016 |
Hardwick SA, Chen WY, Wong T, Deveson IW, Blackburn J, Andersen SB, Nielsen LK, Mattick JS, Mercer TR. Spliced synthetic genes as internal controls in RNA sequencing experiments. Nature Methods. PMID 27502218 DOI: 10.1038/nmeth.3958 |
0.413 |
|
| 2016 |
Bell CC, Amaral PP, Kalsbeek A, Magor GW, Gillinder KR, Tangermann P, di Lisio L, Cheetham SW, Gruhl F, Frith J, Tallack MR, Ru KL, Crawford J, Mattick JS, Dinger ME, et al. The Evx1/Evx1as gene locus regulates anterior-posterior patterning during gastrulation. Scientific Reports. 6: 26657. PMID 27226347 DOI: 10.1038/srep26657 |
0.331 |
|
| 2016 |
Bussotti G, Leonardi T, Clark MB, Mercer TR, Crawford J, Malquori L, Notredame C, Dinger ME, Mattick JS, Enright AJ. Improved definition of the mouse transcriptome via targeted RNA sequencing. Genome Research. 26: 705-716. PMID 27197243 DOI: 10.1101/gr.199760.115 |
0.399 |
|
| 2016 |
Lu Z, Zhang QC, Lee B, Flynn RA, Smith MA, Robinson JT, Davidovich C, Gooding AR, Goodrich KJ, Mattick JS, Mesirov JP, Cech TR, Chang HY. RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure. Cell. PMID 27180905 DOI: 10.1016/J.Cell.2016.04.028 |
0.35 |
|
| 2016 |
Zhao W, Mazar J, Lee B, Sawada J, Li JL, Shelley J, Govindarajan S, Towler D, Mattick JS, Komatsu M, Dinger ME, Perera RJ. The long non-coding RNA SPRIGHTLY regulates cell proliferation in primary human melanocytes. The Journal of Investigative Dermatology. PMID 26829028 DOI: 10.1016/J.Jid.2016.01.018 |
0.342 |
|
| 2015 |
Briggs JA, Wolvetang EJ, Mattick JS, Rinn JL, Barry G. Mechanisms of Long Non-coding RNAs in Mammalian Nervous System Development, Plasticity, Disease, and Evolution. Neuron. 88: 861-77. PMID 26637795 DOI: 10.1016/j.neuron.2015.09.045 |
0.407 |
|
| 2015 |
Spadaro PA, Flavell CR, Widagdo J, Ratnu VS, Troup M, Ragan C, Mattick JS, Bredy TW. Long Noncoding RNA-Directed Epigenetic Regulation of Gene Expression Is Associated with Anxiety-like Behavior in Mice. Biological Psychiatry. PMID 25792222 DOI: 10.1016/J.Biopsych.2015.02.004 |
0.613 |
|
| 2015 |
Clark MB, Mercer TR, Bussotti G, Leonardi T, Haynes KR, Crawford J, Brunck ME, Cao KA, Thomas GP, Chen WY, Taft RJ, Nielsen LK, Enright AJ, Mattick JS, Dinger ME. Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing. Nature Methods. 12: 339-42. PMID 25751143 DOI: 10.1038/nmeth.3321 |
0.398 |
|
| 2015 |
Mattick JS, Rinn JL. Discovery and annotation of long noncoding RNAs. Nature Structural & Molecular Biology. 22: 5-7. PMID 25565026 DOI: 10.1038/nsmb.2942 |
0.378 |
|
| 2015 |
Mercer TR, Clark MB, Andersen SB, Brunck ME, Haerty W, Crawford J, Taft RJ, Nielsen LK, Dinger ME, Mattick JS. Genome-wide discovery of human splicing branchpoints. Genome Research. 25: 290-303. PMID 25561518 DOI: 10.1101/Gr.182899.114 |
0.331 |
|
| 2014 |
Liu PY, Erriquez D, Marshall GM, Tee AE, Polly P, Wong M, Liu B, Bell JL, Zhang XD, Milazzo G, Cheung BB, Fox A, Swarbrick A, Hüttelmaier S, Kavallaris M, ... ... Mattick JS, et al. Effects of a novel long noncoding RNA, lncUSMycN, on N-Myc expression and neuroblastoma progression. Journal of the National Cancer Institute. 106. PMID 24906397 DOI: 10.1093/Jnci/Dju113 |
0.377 |
|
| 2014 |
Morris KV, Mattick JS. The rise of regulatory RNA. Nature Reviews. Genetics. 15: 423-37. PMID 24776770 DOI: 10.1038/Nrg3722 |
0.417 |
|
| 2014 |
Mercer TR, Clark MB, Crawford J, Brunck ME, Gerhardt DJ, Taft RJ, Nielsen LK, Dinger ME, Mattick JS. Targeted sequencing for gene discovery and quantification using RNA CaptureSeq. Nature Protocols. 9: 989-1009. PMID 24705597 DOI: 10.1038/nprot.2014.058 |
0.343 |
|
| 2014 |
Barry G, Briggs JA, Vanichkina DP, Poth EM, Beveridge NJ, Ratnu VS, Nayler SP, Nones K, Hu J, Bredy TW, Nakagawa S, Rigo F, Taft RJ, Cairns MJ, Blackshaw S, ... ... Mattick JS, et al. The long non-coding RNA Gomafu is acutely regulated in response to neuronal activation and involved in schizophrenia-associated alternative splicing. Molecular Psychiatry. 19: 486-94. PMID 23628989 DOI: 10.1038/Mp.2013.45 |
0.593 |
|
| 2013 |
Mattick JS. Probing the phenomics of noncoding RNA. Elife. 2: e01968. PMID 24381251 DOI: 10.7554/eLife.01968 |
0.328 |
|
| 2013 |
Liu G, Mercer TR, Shearwood AM, Siira SJ, Hibbs ME, Mattick JS, Rackham O, Filipovska A. Mapping of mitochondrial RNA-protein interactions by digital RNase footprinting. Cell Reports. 5: 839-48. PMID 24183674 DOI: 10.1016/J.Celrep.2013.09.036 |
0.334 |
|
| 2013 |
Li JL, Mazar J, Zhong C, Faulkner GJ, Govindarajan SS, Zhang Z, Dinger ME, Meredith G, Adams C, Zhang S, Mattick JS, Ray A, Perera RJ. Genome-wide methylated CpG island profiles of melanoma cells reveal a melanoma coregulation network. Scientific Reports. 3: 2962. PMID 24129253 DOI: 10.1038/Srep02962 |
0.317 |
|
| 2013 |
Smith MA, Gesell T, Stadler PF, Mattick JS. Widespread purifying selection on RNA structure in mammals. Nucleic Acids Research. 41: 8220-36. PMID 23847102 DOI: 10.1093/Nar/Gkt596 |
0.332 |
|
| 2013 |
Clark MB, Choudhary A, Smith MA, Taft RJ, Mattick JS. The dark matter rises: the expanding world of regulatory RNAs. Essays in Biochemistry. 54: 1-16. PMID 23829523 DOI: 10.1042/bse0540001 |
0.447 |
|
| 2013 |
Liu G, Mattick JS, Taft RJ. A meta-analysis of the genomic and transcriptomic composition of complex life. Cell Cycle (Georgetown, Tex.). 12: 2061-72. PMID 23759593 DOI: 10.4161/cc.25134 |
0.321 |
|
| 2013 |
Amaral PP, Dinger ME, Mattick JS. Non-coding RNAs in homeostasis, disease and stress responses: an evolutionary perspective. Briefings in Functional Genomics. 12: 254-78. PMID 23709461 DOI: 10.1093/bfgp/elt016 |
0.33 |
|
| 2013 |
Mercer TR, Mattick JS. Structure and function of long noncoding RNAs in epigenetic regulation. Nature Structural & Molecular Biology. 20: 300-7. PMID 23463315 DOI: 10.1038/nsmb.2480 |
0.427 |
|
| 2013 |
Cattenoz PB, Taft RJ, Westhof E, Mattick JS. Transcriptome-wide identification of A > I RNA editing sites by inosine specific cleavage. Rna (New York, N.Y.). 19: 257-70. PMID 23264566 DOI: 10.1261/rna.036202.112 |
0.409 |
|
| 2012 |
Schonrock N, Harvey RP, Mattick JS. Long noncoding RNAs in cardiac development and pathophysiology. Circulation Research. 111: 1349-62. PMID 23104877 DOI: 10.1161/CIRCRESAHA.112.268953 |
0.369 |
|
| 2012 |
Clark MB, Johnston RL, Inostroza-Ponta M, Fox AH, Fortini E, Moscato P, Dinger ME, Mattick JS. Genome-wide analysis of long noncoding RNA stability. Genome Research. 22: 885-98. PMID 22406755 DOI: 10.1101/gr.131037.111 |
0.397 |
|
| 2012 |
Mattick JS. RNA driving the epigenetic bus. The Embo Journal. 31: 515-6. PMID 22293829 DOI: 10.1038/emboj.2011.479 |
0.336 |
|
| 2012 |
Mercer TR, Gerhardt DJ, Dinger ME, Crawford J, Trapnell C, Jeddeloh JA, Mattick JS, Rinn JL. Targeted RNA sequencing reveals the deep complexity of the human transcriptome. Nature Biotechnology. 30: 99-104. PMID 22081020 DOI: 10.1038/Nbt.2024 |
0.333 |
|
| 2011 |
Rackham O, Shearwood AM, Mercer TR, Davies SM, Mattick JS, Filipovska A. Long noncoding RNAs are generated from the mitochondrial genome and regulated by nuclear-encoded proteins. Rna (New York, N.Y.). 17: 2085-93. PMID 22028365 DOI: 10.1261/Rna.029405.111 |
0.334 |
|
| 2011 |
Taft RJ, Hawkins PG, Mattick JS, Morris KV. The relationship between transcription initiation RNAs and CCCTC-binding factor (CTCF) localization. Epigenetics & Chromatin. 4: 13. PMID 21813016 DOI: 10.1186/1756-8935-4-13 |
0.387 |
|
| 2011 |
Dinger ME, Gascoigne DK, Mattick JS. The evolution of RNAs with multiple functions. Biochimie. 93: 2013-8. PMID 21802485 DOI: 10.1016/j.biochi.2011.07.018 |
0.419 |
|
| 2011 |
Clark MB, Amaral PP, Schlesinger FJ, Dinger ME, Taft RJ, Rinn JL, Ponting CP, Stadler PF, Morris KV, Morillon A, Rozowsky JS, Gerstein MB, Wahlestedt C, Hayashizaki Y, Carninci P, ... ... Mattick JS, et al. The reality of pervasive transcription. Plos Biology. 9: e1000625; discussion. PMID 21765801 DOI: 10.1371/Journal.Pbio.1000625 |
0.379 |
|
| 2011 |
Mattick JS. Long noncoding RNAs in cell and developmental biology. Seminars in Cell & Developmental Biology. 22: 327. PMID 21621631 DOI: 10.1016/j.semcdb.2011.05.002 |
0.339 |
|
| 2011 |
Khaitan D, Dinger ME, Mazar J, Crawford J, Smith MA, Mattick JS, Perera RJ. The melanoma-upregulated long noncoding RNA SPRY4-IT1 modulates apoptosis and invasion. Cancer Research. 71: 3852-62. PMID 21558391 DOI: 10.1111/J.1742-4658.2011.08137.X |
0.323 |
|
| 2011 |
Mattick JS. The central role of RNA in human development and cognition. Febs Letters. 585: 1600-16. PMID 21557942 DOI: 10.1016/j.febslet.2011.05.001 |
0.399 |
|
| 2011 |
Buske FA, Mattick JS, Bailey TL. Potential in vivo roles of nucleic acid triple-helices. Rna Biology. 8: 427-39. PMID 21525785 DOI: 10.4161/rna.8.3.14999 |
0.341 |
|
| 2011 |
Bredy TW, Lin Q, Wei W, Baker-Andresen D, Mattick JS. MicroRNA regulation of neural plasticity and memory. Neurobiology of Learning and Memory. 96: 89-94. PMID 21524708 DOI: 10.1016/J.Nlm.2011.04.004 |
0.613 |
|
| 2011 |
Askarian-Amiri ME, Crawford J, French JD, Smart CE, Smith MA, Clark MB, Ru K, Mercer TR, Thompson ER, Lakhani SR, Vargas AC, Campbell IG, Brown MA, Dinger ME, Mattick JS. SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer. Rna (New York, N.Y.). 17: 878-91. PMID 21460236 DOI: 10.1261/rna.2528811 |
0.334 |
|
| 2011 |
Bracken CP, Szubert JM, Mercer TR, Dinger ME, Thomson DW, Mattick JS, Michael MZ, Goodall GJ. Global analysis of the mammalian RNA degradome reveals widespread miRNA-dependent and miRNA-independent endonucleolytic cleavage. Nucleic Acids Research. 39: 5658-68. PMID 21427086 DOI: 10.1093/nar/gkr110 |
0.338 |
|
| 2011 |
Clark MB, Mattick JS. Long noncoding RNAs in cell biology. Seminars in Cell & Developmental Biology. 22: 366-76. PMID 21256239 DOI: 10.1016/j.semcdb.2011.01.001 |
0.4 |
|
| 2011 |
Amaral PP, Clark MB, Gascoigne DK, Dinger ME, Mattick JS. lncRNAdb: a reference database for long noncoding RNAs. Nucleic Acids Research. 39: D146-51. PMID 21112873 DOI: 10.1093/nar/gkq1138 |
0.411 |
|
| 2011 |
Mercer TR, Wilhelm D, Dinger ME, Soldà G, Korbie DJ, Glazov EA, Truong V, Schwenke M, Simons C, Matthaei KI, Saint R, Koopman P, Mattick JS. Expression of distinct RNAs from 3' untranslated regions. Nucleic Acids Research. 39: 2393-403. PMID 21075793 DOI: 10.1093/Nar/Gkq1158 |
0.393 |
|
| 2010 |
Mattick JS. The central role of RNA in the genetic programming of complex organisms. Anais Da Academia Brasileira De CiãªNcias. 82: 933-9. PMID 21152768 |
0.423 |
|
| 2010 |
Mercer TR, Dinger ME, Bracken CP, Kolle G, Szubert JM, Korbie DJ, Askarian-Amiri ME, Gardiner BB, Goodall GJ, Grimmond SM, Mattick JS. Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome. Genome Research. 20: 1639-50. PMID 21045082 DOI: 10.1101/gr.112128.110 |
0.42 |
|
| 2010 |
Mattick JS. Linc-ing Long noncoding RNAs and enhancer function. Developmental Cell. 19: 485-6. PMID 20951339 DOI: 10.1016/j.devcel.2010.10.003 |
0.369 |
|
| 2010 |
Mattick J. Video Q&A: Non-coding RNAs and eukaryotic evolution - a personal view. Bmc Biology. 8: 67. PMID 20646265 DOI: 10.1186/1741-7007-8-67 |
0.433 |
|
| 2010 |
Taft RJ, Simons C, Nahkuri S, Oey H, Korbie DJ, Mercer TR, Holst J, Ritchie W, Wong JJ, Rasko JE, Rokhsar DS, Degnan BM, Mattick JS. Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans. Nature Structural & Molecular Biology. 17: 1030-4. PMID 20622877 DOI: 10.1038/nsmb.1841 |
0.413 |
|
| 2010 |
Jung CH, Makunin IV, Mattick JS. Identification of conserved Drosophila-specific euchromatin-restricted non-coding sequence motifs. Genomics. 96: 154-66. PMID 20595017 DOI: 10.1016/j.ygeno.2010.05.006 |
0.315 |
|
| 2010 |
Mattick JS. RNA as the substrate for epigenome-environment interactions: RNA guidance of epigenetic processes and the expansion of RNA editing in animals underpins development, phenotypic plasticity, learning, and cognition. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 32: 548-52. PMID 20544741 DOI: 10.1002/bies.201000028 |
0.327 |
|
| 2010 |
Mazar J, Sinha S, Dinger ME, Mattick JS, Perera RJ. Protein-coding and non-coding gene expression analysis in differentiating human keratinocytes using a three-dimensional epidermal equivalent. Molecular Genetics and Genomics : Mgg. 284: 1-9. PMID 20499100 DOI: 10.1007/S00438-010-0543-6 |
0.304 |
|
| 2010 |
Qureshi IA, Mattick JS, Mehler MF. Long non-coding RNAs in nervous system function and disease. Brain Research. 1338: 20-35. PMID 20380817 DOI: 10.1016/J.Brainres.2010.03.110 |
0.404 |
|
| 2010 |
Mercer TR, Qureshi IA, Gokhan S, Dinger ME, Li G, Mattick JS, Mehler MF. Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation. Bmc Neuroscience. 11: 14. PMID 20137068 DOI: 10.1186/1471-2202-11-14 |
0.428 |
|
| 2010 |
Jung CH, Hansen MA, Makunin IV, Korbie DJ, Mattick JS. Identification of novel non-coding RNAs using profiles of short sequence reads from next generation sequencing data. Bmc Genomics. 11: 77. PMID 20113528 DOI: 10.1186/1471-2164-11-77 |
0.374 |
|
| 2010 |
de Hoon MJ, Taft RJ, Hashimoto T, Kanamori-Katayama M, Kawaji H, Kawano M, Kishima M, Lassmann T, Faulkner GJ, Mattick JS, Daub CO, Carninci P, Kawai J, Suzuki H, Hayashizaki Y. Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries. Genome Research. 20: 257-64. PMID 20051556 DOI: 10.1101/Gr.095273.109 |
0.336 |
|
| 2010 |
Mattick JS, Taft RJ, Faulkner GJ. A global view of genomic information--moving beyond the gene and the master regulator. Trends in Genetics : Tig. 26: 21-8. PMID 19944475 DOI: 10.1016/j.tig.2009.11.002 |
0.4 |
|
| 2010 |
Taft RJ, Pang KC, Mercer TR, Dinger M, Mattick JS. Non-coding RNAs: regulators of disease. The Journal of Pathology. 220: 126-39. PMID 19882673 DOI: 10.1002/path.2638 |
0.451 |
|
| 2009 |
Mattick JS. Deconstructing the dogma: a new view of the evolution and genetic programming of complex organisms. Annals of the New York Academy of Sciences. 1178: 29-46. PMID 19845626 DOI: 10.1111/j.1749-6632.2009.04991.x |
0.384 |
|
| 2009 |
Dinger ME, Amaral PP, Mercer TR, Mattick JS. Pervasive transcription of the eukaryotic genome: functional indices and conceptual implications. Briefings in Functional Genomics & Proteomics. 8: 407-23. PMID 19770204 DOI: 10.1093/bfgp/elp038 |
0.318 |
|
| 2009 |
Amaral PP, Neyt C, Wilkins SJ, Askarian-Amiri ME, Sunkin SM, Perkins AC, Mattick JS. Complex architecture and regulated expression of the Sox2ot locus during vertebrate development. Rna (New York, N.Y.). 15: 2013-27. PMID 19767420 DOI: 10.1261/rna.1705309 |
0.348 |
|
| 2009 |
Taft RJ, Kaplan CD, Simons C, Mattick JS. Evolution, biogenesis and function of promoter-associated RNAs. Cell Cycle (Georgetown, Tex.). 8: 2332-8. PMID 19597344 DOI: 10.4161/Cc.8.15.9154 |
0.409 |
|
| 2009 |
Pang KC, Dinger ME, Mercer TR, Malquori L, Grimmond SM, Chen W, Mattick JS. Genome-wide identification of long noncoding RNAs in CD8+ T cells. Journal of Immunology (Baltimore, Md. : 1950). 182: 7738-48. PMID 19494298 DOI: 10.4049/Jimmunol.0900603 |
0.311 |
|
| 2009 |
Taft RJ, Glazov EA, Lassmann T, Hayashizaki Y, Carninci P, Mattick JS. Small RNAs derived from snoRNAs. Rna (New York, N.Y.). 15: 1233-40. PMID 19474147 DOI: 10.1261/Rna.1528909 |
0.378 |
|
| 2009 |
Mattick JS. The genetic signatures of noncoding RNAs. Plos Genetics. 5: e1000459. PMID 19390609 DOI: 10.1371/journal.pgen.1000459 |
0.377 |
|
| 2009 |
Taft RJ, Glazov EA, Cloonan N, Simons C, Stephen S, Faulkner GJ, Lassmann T, Forrest AR, Grimmond SM, Schroder K, Irvine K, Arakawa T, Nakamura M, Kubosaki A, Hayashida K, ... ... Mattick JS, et al. Tiny RNAs associated with transcription start sites in animals. Nature Genetics. 41: 572-8. PMID 19377478 DOI: 10.1038/Ng.312 |
0.387 |
|
| 2009 |
Mercer TR, Dinger ME, Mattick JS. Long non-coding RNAs: insights into functions. Nature Reviews. Genetics. 10: 155-9. PMID 19188922 DOI: 10.1038/nrg2521 |
0.418 |
|
| 2009 |
Mattick JS, Amaral PP, Dinger ME, Mercer TR, Mehler MF. RNA regulation of epigenetic processes. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 31: 51-9. PMID 19154003 DOI: 10.1002/Bies.080099 |
0.408 |
|
| 2009 |
Sunwoo H, Dinger ME, Wilusz JE, Amaral PP, Mattick JS, Spector DL. MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles. Genome Research. 19: 347-59. PMID 19106332 DOI: 10.1101/Gr.087775.108 |
0.319 |
|
| 2009 |
Dinger ME, Pang KC, Mercer TR, Crowe ML, Grimmond SM, Mattick JS. NRED: a database of long noncoding RNA expression. Nucleic Acids Research. 37: D122-6. PMID 18829717 DOI: 10.1093/nar/gkn617 |
0.38 |
|
| 2009 |
Taft RJ, Glazov EA, Cloonan N, Simons C, Stephen S, Faulkner GJ, Lassmann T, Forrest ARR, Grimmond SM, Schroder K, Irvine K, Arakawa T, Nakamura M, Kubosaki A, Hayashida K, ... ... Mattick JS, et al. Erratum: Corrigendum: Tiny RNAs associated with transcription start sites in animals Nature Genetics. 41: 859-859. DOI: 10.1038/Ng0709-859A |
0.323 |
|
| 2008 |
Dinger ME, Pang KC, Mercer TR, Mattick JS. Differentiating protein-coding and noncoding RNA: challenges and ambiguities. Plos Computational Biology. 4: e1000176. PMID 19043537 DOI: 10.1371/journal.pcbi.1000176 |
0.411 |
|
| 2008 |
Mercer TR, Dinger ME, Mariani J, Kosik KS, Mehler MF, Mattick JS. Noncoding RNAs in Long-Term Memory Formation. The Neuroscientist : a Review Journal Bringing Neurobiology, Neurology and Psychiatry. 14: 434-45. PMID 18997122 DOI: 10.1177/1073858408319187 |
0.337 |
|
| 2008 |
Amaral PP, Mattick JS. Noncoding RNA in development. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 19: 454-92. PMID 18839252 DOI: 10.1007/s00335-008-9136-7 |
0.428 |
|
| 2008 |
Dinger ME, Amaral PP, Mercer TR, Pang KC, Bruce SJ, Gardiner BB, Askarian-Amiri ME, Ru K, Soldà G, Simons C, Sunkin SM, Crowe ML, Grimmond SM, Perkins AC, Mattick JS. Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation. Genome Research. 18: 1433-45. PMID 18562676 DOI: 10.1101/gr.078378.108 |
0.361 |
|
| 2008 |
Mattick JS, Mehler MF. RNA editing, DNA recoding and the evolution of human cognition. Trends in Neurosciences. 31: 227-33. PMID 18395806 DOI: 10.1016/J.Tins.2008.02.003 |
0.394 |
|
| 2008 |
Dinger ME, Mercer TR, Mattick JS. RNAs as extracellular signaling molecules. Journal of Molecular Endocrinology. 40: 151-9. PMID 18372404 DOI: 10.1677/JME-07-0160 |
0.357 |
|
| 2008 |
Amaral PP, Dinger ME, Mercer TR, Mattick JS. The eukaryotic genome as an RNA machine. Science (New York, N.Y.). 319: 1787-9. PMID 18369136 DOI: 10.1126/science.1155472 |
0.369 |
|
| 2008 |
Mercer TR, Dinger ME, Sunkin SM, Mehler MF, Mattick JS. Specific expression of long noncoding RNAs in the mouse brain. Proceedings of the National Academy of Sciences of the United States of America. 105: 716-21. PMID 18184812 DOI: 10.1073/Pnas.0706729105 |
0.439 |
|
| 2008 |
Mattick J. A New Understanding Of The Human Genome Genome Informatics. 21: 233-234. DOI: 10.11234/Gi1990.21.233 |
0.45 |
|
| 2007 |
Makunin IV, Pheasant M, Simons C, Mattick JS. Orthologous microRNA genes are located in cancer-associated genomic regions in human and mouse. Plos One. 2: e1133. PMID 17989771 DOI: 10.1371/journal.pone.0001133 |
0.322 |
|
| 2007 |
Frith MC, Carninci P, Kai C, Kawai J, Bailey TL, Hayashizaki Y, Mattick JS. Splicing bypasses 3' end formation signals to allow complex gene architectures. Gene. 403: 188-93. PMID 17897791 DOI: 10.1016/J.Gene.2007.08.012 |
0.306 |
|
| 2007 |
Mehler MF, Mattick JS. Noncoding RNAs and RNA editing in brain development, functional diversification, and neurological disease. Physiological Reviews. 87: 799-823. PMID 17615389 DOI: 10.1152/Physrev.00036.2006 |
0.422 |
|
| 2007 |
Mattick JS. A new paradigm for developmental biology. The Journal of Experimental Biology. 210: 1526-47. PMID 17449818 DOI: 10.1242/jeb.005017 |
0.356 |
|
| 2007 |
Pang KC, Stephen S, Dinger ME, Engström PG, Lenhard B, Mattick JS. RNAdb 2.0--an expanded database of mammalian non-coding RNAs. Nucleic Acids Research. 35: D178-82. PMID 17145715 DOI: 10.1093/Nar/Gkl926 |
0.408 |
|
| 2006 |
Glazov EA, Pheasant M, Nahkuri S, Mattick JS. Evidence for control of splicing by alternative RNA secondary structures in Dipteran homothorax pre-mRNA. Rna Biology. 3: 36-9. PMID 17114937 |
0.366 |
|
| 2006 |
Kenzelmann M, Rippe K, Mattick JS. RNA: Networks & Imaging. Molecular Systems Biology. 2: 44. PMID 16924265 DOI: 10.1038/msb4100086 |
0.383 |
|
| 2006 |
Mehler MF, Mattick JS. Non-coding RNAs in the nervous system. The Journal of Physiology. 575: 333-41. PMID 16809366 DOI: 10.1113/Jphysiol.2006.113191 |
0.384 |
|
| 2006 |
Furuno M, Pang KC, Ninomiya N, Fukuda S, Frith MC, Bult C, Kai C, Kawai J, Carninci P, Hayashizaki Y, Mattick JS, Suzuki H. Clusters of internally primed transcripts reveal novel long noncoding RNAs. Plos Genetics. 2: e37. PMID 16683026 DOI: 10.1371/Journal.Pgen.0020037 |
0.336 |
|
| 2006 |
Mattick JS, Makunin IV. Non-coding RNA. Human Molecular Genetics. 15: R17-29. PMID 16651366 DOI: 10.1093/hmg/ddl046 |
0.448 |
|
| 2006 |
Ravasi T, Suzuki H, Pang KC, Katayama S, Furuno M, Okunishi R, Fukuda S, Ru K, Frith MC, Gongora MM, Grimmond SM, Hume DA, Hayashizaki Y, Mattick JS. Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome. Genome Research. 16: 11-9. PMID 16344565 DOI: 10.1101/Gr.4200206 |
0.394 |
|
| 2006 |
Pang KC, Frith MC, Mattick JS. Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function. Trends in Genetics : Tig. 22: 1-5. PMID 16290135 DOI: 10.1016/J.Tig.2005.10.003 |
0.302 |
|
| 2006 |
Mattick JS. The underworld of RNA Nature Genetics. 38: 393-393. DOI: 10.1038/NG0406-1 |
0.332 |
|
| 2005 |
Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, ... ... Mattick J, et al. Antisense transcription in the mammalian transcriptome. Science (New York, N.Y.). 309: 1564-6. PMID 16141073 DOI: 10.1126/Science.1112009 |
0.492 |
|
| 2005 |
Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, ... ... Mattick JS, et al. The transcriptional landscape of the mammalian genome. Science (New York, N.Y.). 309: 1559-63. PMID 16141072 DOI: 10.1126/Science.1112014 |
0.304 |
|
| 2005 |
Mattick JS. The functional genomics of noncoding RNA. Science (New York, N.Y.). 309: 1527-8. PMID 16141063 DOI: 10.1126/science.1117806 |
0.374 |
|
| 2005 |
Glazov EA, Pheasant M, McGraw EA, Bejerano G, Mattick JS. Ultraconserved elements in insect genomes: a highly conserved intronic sequence implicated in the control of homothorax mRNA splicing. Genome Research. 15: 800-8. PMID 15899965 DOI: 10.1101/Gr.3545105 |
0.311 |
|
| 2005 |
Mattick JS, Makunin IV. Small regulatory RNAs in mammals. Human Molecular Genetics. 14: R121-32. PMID 15809264 DOI: 10.1093/hmg/ddi101 |
0.446 |
|
| 2005 |
Pang KC, Stephen S, Engström PG, Tajul-Arifin K, Chen W, Wahlestedt C, Lenhard B, Hayashizaki Y, Mattick JS. RNAdb--a comprehensive mammalian noncoding RNA database. Nucleic Acids Research. 33: D125-30. PMID 15608161 DOI: 10.1093/Nar/Gki089 |
0.439 |
|
| 2004 |
Mattick JS. RNA regulation: a new genetics? Nature Reviews. Genetics. 5: 316-23. PMID 15131654 DOI: 10.1038/nrg1321 |
0.312 |
|
| 2004 |
Mattick JS. Digital RNA regulation of complex organisms Gene Therapy and Regulation. 2: 313-319. DOI: 10.1163/1568558043967517 |
0.309 |
|
| 2003 |
Mattick JS. Challenging the dogma: the hidden layer of non-protein-coding RNAs in complex organisms. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 25: 930-9. PMID 14505360 DOI: 10.1002/bies.10332 |
0.389 |
|
| 2001 |
Mattick JS. Non-coding RNAs: the architects of eukaryotic complexity. Embo Reports. 2: 986-91. PMID 11713189 DOI: 10.1093/embo-reports/kve230 |
0.425 |
|
| 2001 |
Mattick JS, Gagen MJ. The evolution of controlled multitasked gene networks: the role of introns and other noncoding RNAs in the development of complex organisms. Molecular Biology and Evolution. 18: 1611-30. PMID 11504843 |
0.429 |
|
| 2000 |
Fitzgerald J, Kennedy D, Viseshakul N, Cohen BN, Mattick J, Bateman JF, Forsayeth JR. UNCL, the mammalian homologue of UNC-50, is an inner nuclear membrane RNA-binding protein. Brain Research. 877: 110-23. PMID 10980252 DOI: 10.1016/S0006-8993(00)02692-5 |
0.388 |
|
| 1996 |
Kennedy D, Ramsdale T, Mattick J, Little M. An RNA recognition motif in Wilms' tumour protein (WT1) revealed by structural modelling. Nature Genetics. 12: 329-31. PMID 8589729 DOI: 10.1038/Ng0396-329 |
0.467 |
|
| 1993 |
Hobbs M, Collie ES, Free PD, Livingston SP, Mattick JS. PilS and PilR, a two-component transcriptional regulatory system controlling expression of type 4 fimbriae in Pseudomonas aeruginosa. Molecular Microbiology. 7: 669-82. PMID 8097014 |
0.318 |
|
| 1988 |
Hobbs M, Dalrymple B, Delaney SF, Mattick JS. Transcription of the fimbrial subunit gene and an associated transfer RNA gene of Pseudomonas aeruginosa. Gene. 62: 219-27. PMID 2452767 DOI: 10.1016/0378-1119(88)90560-4 |
0.321 |
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