Emily B. Josephs - Publications

Affiliations: 
University of Toronto, Toronto, ON, Canada 
Area:
Evolutionary genetics

31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2025 Buysse SF, Pérez SG, Puzey JR, Garrison A, Bradburd GS, Oakley CG, Tonsor SJ, Picó FX, Josephs EB, Conner JK. Evaluating the Roles of Drift and Selection in Trait Loss along an Elevational Gradient. Evolution; International Journal of Organic Evolution. PMID 40241167 DOI: 10.1093/evolut/qpaf078  0.768
2025 Roberts MD, Davis O, Josephs EB, Williamson RJ. K-mer-based Approaches to Bridging Pangenomics and Population Genetics. Molecular Biology and Evolution. 42. PMID 40111256 DOI: 10.1093/molbev/msaf047  0.669
2025 Catlin NS, Agha HI, Platts AE, Munasinghe M, Hirsch CN, Josephs EB. Structural Variants Contribute to Phenotypic Variation in Maize. Molecular Ecology. e17662. PMID 39945381 DOI: 10.1111/mec.17662  0.385
2024 Roberts MD, Davis O, Josephs EB, Williamson RJ. k-mer-based approaches to bridging pangenomics and population genetics. Arxiv. PMID 39398200  0.669
2024 Wadgymar SM, Sheth S, Josephs E, DeMarche M, Anderson J. Defining fitness in evolutionary ecology. International Journal of Plant Sciences. 185: 218-227. PMID 39035046 DOI: 10.1086/729360  0.323
2024 Catlin NS, Agha HI, Platts AE, Munasinghe M, Hirsch CN, Josephs EB. Structural variants contribute to phenotypic variation in maize. Biorxiv : the Preprint Server For Biology. PMID 38948717 DOI: 10.1101/2024.06.14.599082  0.342
2024 Buysse SF, Pérez SG, Puzey JR, Garrison A, Bradburd GS, Oakley CG, Tonsor SJ, Picó FX, Josephs EB, Conner JK. The Roles of Drift and Selection on Short Stamen Loss in along an Elevational Gradient in the Spanish Pyrenees. Biorxiv : the Preprint Server For Biology. PMID 38915635 DOI: 10.1101/2024.06.12.598645  0.765
2024 Roberts M, Josephs EB. Previously unmeasured genetic diversity explains part of Lewontin's paradox in a k-mer-based meta-analysis of 112 plant species. Biorxiv : the Preprint Server For Biology. PMID 38798362 DOI: 10.1101/2024.05.17.594778  0.416
2023 Roberts M, Josephs EB. Weaker selection on genes with treatment-specific expression consistent with a limit on plasticity evolution in Arabidopsis thaliana. Genetics. 224. PMID 37094602 DOI: 10.1093/genetics/iyad074  0.448
2022 Wadgymar SM, DeMarche ML, Josephs EB, Sheth SN, Anderson JT. Local adaptation: Causal agents of selection and adaptive trait divergence. Annual Review of Ecology, Evolution, and Systematics. 53: 87-111. PMID 37790997 DOI: 10.1146/annurev-ecolsys-012722-035231  0.305
2022 Johnston SE, Chen N, Josephs EB. Taking quantitative genomics into the wild. Proceedings. Biological Sciences. 289: 20221930. PMID 36541172 DOI: 10.1098/rspb.2022.1930  0.61
2022 Lasky JR, Josephs EB, Morris GP. Genotype-environment associations to reveal the molecular basis of environmental adaptation. The Plant Cell. PMID 36005926 DOI: 10.1093/plcell/koac267  0.412
2021 Catlin NS, Josephs EB. The important contribution of transposable elements to phenotypic variation and evolution. Current Opinion in Plant Biology. 65: 102140. PMID 34883307 DOI: 10.1016/j.pbi.2021.102140  0.463
2021 Horvath R, Josephs EB, Pesquet E, Stinchcombe JR, Wright SI, Scofield D, Slotte T. Selection on accessible chromatin regions in Capsella grandiflora. Molecular Biology and Evolution. PMID 34498072 DOI: 10.1093/molbev/msab270  0.786
2021 Wang L, Josephs EB, Lee KM, Roberts LM, Rellán-Álvarez R, Ross-Ibarra J, Hufford MB. Molecular Parallelism Underlies Convergent Highland Adaptation of Maize Landraces. Molecular Biology and Evolution. PMID 33905497 DOI: 10.1093/molbev/msab119  0.75
2021 Blanc J, Kremling KAG, Buckler E, Josephs EB. Local adaptation contributes to gene expression divergence in maize. G3 (Bethesda, Md.). 11. PMID 33604670 DOI: 10.1093/g3journal/jkab004  0.473
2020 Josephs EB. Gene expression links genotype and phenotype during rapid adaptation. Molecular Ecology. PMID 33187015 DOI: 10.1111/mec.15729  0.418
2020 Josephs EB, Lee YW, Wood CW, Schoen DJ, Wright SI, Stinchcombe JR. The evolutionary forces shaping cis and trans regulation of gene expression within a population of outcrossing plants. Molecular Biology and Evolution. PMID 32321158 DOI: 10.1093/Molbev/Msaa102  0.813
2019 Uzunović J, Josephs EB, Stinchcombe JR, Wright SI. Transposable elements are important contributors to standing variation in gene expression in Capsella grandiflora. Molecular Biology and Evolution. PMID 31028401 DOI: 10.1093/Molbev/Msz098  0.755
2019 Josephs EB, Berg JJ, Ross-Ibarra J, Coop G. Detecting Adaptive Differentiation in Structured Populations with Genomic Data and Common Gardens. Genetics. PMID 30679259 DOI: 10.1534/Genetics.118.301786  0.753
2018 Josephs EB. Determining the evolutionary forces shaping G × E. The New Phytologist. PMID 29574919 DOI: 10.1111/Nph.15103  0.408
2017 Josephs EB, Wright SI, Stinchcombe JR, Schoen DJ. The relationship between selection, network connectivity, and regulatory variation within a population of Capsella grandiora. Genome Biology and Evolution. PMID 28402527 DOI: 10.1093/Gbe/Evx068  0.786
2017 Josephs EB, Stinchcombe JR, Wright SI. What can genome-wide association studies tell us about the evolutionary forces maintaining genetic variation for quantitative traits? The New Phytologist. PMID 28211582 DOI: 10.1111/Nph.14410  0.782
2016 Josephs EB, Wright SI. On the Trail of Linked Selection. Plos Genetics. 12: e1006240. PMID 27537331 DOI: 10.1371/Journal.Pgen.1006240  0.645
2015 Josephs EB, Lee YW, Stinchcombe JR, Wright SI. Association mapping reveals the role of purifying selection in the maintenance of genomic variation in gene expression. Proceedings of the National Academy of Sciences of the United States of America. PMID 26604315 DOI: 10.1073/Pnas.1503027112  0.801
2015 Sicard A, Kappel C, Josephs EB, Lee YW, Marona C, Stinchcombe JR, Wright SI, Lenhard M. Divergent sorting of a balanced ancestral polymorphism underlies the establishment of gene-flow barriers in Capsella. Nature Communications. 6: 7960. PMID 26268845 DOI: 10.1038/Ncomms8960  0.766
2015 Douglas GM, Gos G, Steige KA, Salcedo A, Holm K, Josephs EB, Arunkumar R, Ågren JA, Hazzouri KM, Wang W, Platts AE, Williamson RJ, Neuffer B, Lascoux M, Slotte T, et al. Hybrid origins and the earliest stages of diploidization in the highly successful recent polyploid Capsella bursa-pastoris. Proceedings of the National Academy of Sciences of the United States of America. 112: 2806-11. PMID 25691747 DOI: 10.1073/Pnas.1412277112  0.678
2015 Sicard A, Kappel C, Josephs EB, Lee YW, Marona C, Stinchcombe JR, Wright SI, Lenhard M. Divergent sorting of a balanced ancestral polymorphism underlies the establishment of gene-flow barriers in Capsella Nature Communications. 6. DOI: 10.1038/ncomms8960  0.717
2014 Williamson RJ, Josephs EB, Platts AE, Hazzouri KM, Haudry A, Blanchette M, Wright SI. Evidence for widespread positive and negative selection in coding and conserved noncoding regions of Capsella grandiflora. Plos Genetics. 10: e1004622. PMID 25255320 DOI: 10.1371/Journal.Pgen.1004622  0.802
2013 Arunkumar R, Josephs EB, Williamson RJ, Wright SI. Pollen-specific, but not sperm-specific, genes show stronger purifying selection and higher rates of positive selection than sporophytic genes in Capsella grandiflora. Molecular Biology and Evolution. 30: 2475-86. PMID 23997108 DOI: 10.1093/Molbev/Mst149  0.758
2013 Debieu M, Tang C, Stich B, Sikosek T, Effgen S, Josephs E, Schmitt J, Nordborg M, Koornneef M, de Meaux J. Co-variation between seed dormancy, growth rate and flowering time changes with latitude in Arabidopsis thaliana. Plos One. 8: e61075. PMID 23717385 DOI: 10.1371/Journal.Pone.0061075  0.678
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