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Stephane D. Deschamps, Ph.D. - Publications

Affiliations: 
University of Oklahoma, Norman, OK, United States 
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23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Ryazansky SS, Chen C, Potters M, Naumenko AN, Lukyanchikova V, Masri RA, Brusentsov II, Karagodin DA, Yurchenko AA, Dos Anjos VL, Haba Y, Rose NH, Hoffman J, Guo R, Menna T, ... ... Deschamps S, et al. The chromosome-scale genome assembly for the West Nile vector Culex quinquefasciatus uncovers patterns of genome evolution in mosquitoes. Bmc Biology. 22: 16. PMID 38273363 DOI: 10.1186/s12915-024-01825-0  0.342
2020 Compton A, Liang J, Chen C, Lukyanchikova V, Qi Y, Potters M, Settlage R, Miller D, Deschamps S, Mao C, Llaca V, Sharakhov IV, Tu Z. The Beginning of the End: A Chromosomal Assembly of the New World Malaria Mosquito Ends with a Novel Telomere. G3 (Bethesda, Md.). PMID 32883756 DOI: 10.1534/G3.120.401654  0.422
2019 Young J, Zastrow-Hayes G, Deschamps S, Svitashev S, Zaremba M, Acharya A, Paulraj S, Peterson-Burch B, Schwartz C, Djukanovic V, Lenderts B, Feigenbutz L, Wang L, Alarcon C, Siksnys V, et al. CRISPR-Cas9 Editing in Maize: Systematic Evaluation of Off-target Activity and Its Relevance in Crop Improvement. Scientific Reports. 9: 6729. PMID 31040331 DOI: 10.1038/S41598-019-43141-6  0.342
2018 Deschamps S, Zhang Y, Llaca V, Ye L, Sanyal A, King M, May G, Lin H. A chromosome-scale assembly of the sorghum genome using nanopore sequencing and optical mapping. Nature Communications. 9: 4844. PMID 30451840 DOI: 10.1038/S41467-018-07271-1  0.469
2017 Cameron P, Fuller CK, Donohoue PD, Jones BN, Thompson MS, Carter MM, Gradia S, Vidal B, Garner E, Slorach EM, Lau E, Banh LM, Lied AM, Edwards LS, Settle AH, ... ... Deschamps S, et al. Mapping the genomic landscape of CRISPR-Cas9 cleavage. Nature Methods. PMID 28459459 DOI: 10.1038/Nmeth.4284  0.386
2016 Deschamps S, Mudge J, Cameron C, Ramaraj T, Anand A, Fengler K, Hayes K, Llaca V, Jones TJ, May G. Characterization, correction and de novo assembly of an Oxford Nanopore genomic dataset from Agrobacterium tumefaciens. Scientific Reports. 6: 28625. PMID 27350167 DOI: 10.1038/Srep28625  0.407
2016 Sapkota S, Conner JA, Hanna WW, Simon B, Fengler K, Deschamps S, Cigan M, Ozias-Akins P. In Silico and Fluorescence In Situ Hybridization Mapping Reveals Collinearity between the Pennisetum squamulatum Apomixis Carrier-Chromosome and Chromosome 2 of Sorghum and Foxtail Millet. Plos One. 11: e0152411. PMID 27031857 DOI: 10.1371/Journal.Pone.0152411  0.361
2016 Conner J, Sapkota S, Deschamps S, Fengler K, Cigan M, Ozias-Akins P. Targeted sequencing of a complex locus within a polyploid genome using reduced representation libraries Molecular Breeding. 36. DOI: 10.1007/S11032-016-0482-Y  0.444
2015 Burns FR, Cogburn AL, Ankley GT, Villeneuve DL, Waits E, Chang YJ, Llaca V, Deschamps SD, Jackson RE, Hoke RA. Sequencing and de novo draft assemblies of a fathead minnow (Pimephales promelas) reference genome. Environmental Toxicology and Chemistry / Setac. PMID 26513338 DOI: 10.1002/Etc.3186  0.469
2015 Noon JB, Hewezi TA, Maier TR, Simmons C, Wei JZ, Wu G, Llaca V, Deschamps S, Davis E, Mitchum M, Hussey RS, Baum TJ. Eighteen new candidate effectors of the phytonematode Heterodera glycines produced specifically in the secretory esophageal gland cells during parasitism. Phytopathology. PMID 25871857 DOI: 10.1094/Phyto-02-15-0049-R  0.34
2013 Regulski M, Lu Z, Kendall J, Donoghue MT, Reinders J, Llaca V, Deschamps S, Smith A, Levy D, McCombie WR, Tingey S, Rafalski A, Hicks J, Ware D, Martienssen RA. The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA. Genome Research. 23: 1651-62. PMID 23739895 DOI: 10.1101/Gr.153510.112  0.308
2012 Deschamps S, Llaca V, May GD. Genotyping-by-Sequencing in Plants. Biology. 1: 460-83. PMID 24832503 DOI: 10.3390/Biology1030460  0.41
2012 Deschamps S, Nannapaneni K, Zhang Y, Hayes K. Local assemblies of paired-end reduced representation libraries sequenced with the illumina genome analyzer in maize. International Journal of Plant Genomics. 2012: 360598. PMID 23093955 DOI: 10.1155/2012/360598  0.462
2012 Deschamps S, Nannapaneni K, Zhang Y, Hayes K. Local assemblies of paired-end reduced representation libraries sequenced with the illumina genome analyzer in maize International Journal of Plant Genomics. 2012. DOI: 10.1155/2012/360598  0.351
2011 Llaca V, Campbell MA, Deschamps S. Genome Diversity in Maize Journal of Botany. 2011: 1-10. DOI: 10.1155/2011/104172  0.466
2010 Deschamps S, la Rota M, Ratashak JP, Biddle P, Thureen D, Farmer A, Luck S, Beatty M, Nagasawa N, Michael L, Llaca V, Sakai H, May G, Lightner J, Campbell MA. Rapid Genome-wide Single Nucleotide Polymorphism Discovery in Soybean and Rice via Deep Resequencing of Reduced Representation Libraries with the Illumina Genome Analyzer The Plant Genome. 3: 53-68. DOI: 10.3835/Plantgenome2009.09.0026  0.45
2010 Deschamps S, Campbell MA. Utilization of next-generation sequencing platforms in plant genomics and genetic variant discovery Molecular Breeding. 25: 553-570. DOI: 10.1007/S11032-009-9357-9  0.431
2008 Danilevskaya ON, Meng X, Selinger DA, Deschamps S, Hermon P, Vansant G, Gupta R, Ananiev EV, Muszynski MG. Involvement of the MADS-box gene ZMM4 in floral induction and inflorescence development in maize Plant Physiology. 147: 2054-2069. PMID 18539775 DOI: 10.1104/Pp.107.115261  0.379
2005 Deschamps S, Meyer J, Chatterjee G, Wang H, Lengyel P, Roe BA. Erratum to “The mouse Ifi200 gene cluster: Genomic sequence, analysis, and comparison with the human HIN-200 gene cluster” [Genomics 82 (2003) 34–46] Genomics. 85: 654. DOI: 10.1016/J.Ygeno.2005.01.008  0.562
2003 Locke DP, Archidiacono N, Misceo D, Cardone MF, Deschamps S, Roe B, Rocchi M, Eichler EE. Refinement of a chimpanzee pericentric inversion breakpoint to a segmental duplication cluster. Genome Biology. 4: R50. PMID 12914658 DOI: 10.1186/Gb-2003-4-8-R50  0.552
2003 Deschamps S, Meyer J, Chatterjee G, Wang H, Lengyel P, Roe BA. The mouse Ifi200 gene cluster: genomic sequence, analysis, and comparison with the human HIN-200 gene cluster. Genomics. 82: 34-46. PMID 12809674 DOI: 10.1016/S0888-7543(03)00092-2  0.559
2002 Wang H, Ding B, Liu CJ, Ma XY, Deschamps S, Roe BA, Lengyel P. The increase in levels of interferon-inducible proteins p202a and p202b and RNA-dependent protein kinase (PKR) during myoblast differentiation is due to transactivation by MyoD: their tissue distribution in uninfected mice does not depend on interferons. Journal of Interferon & Cytokine Research : the Official Journal of the International Society For Interferon and Cytokine Research. 22: 729-37. PMID 12162885 DOI: 10.1089/10799900260100231  0.453
2000 Liu Cj, Wang H, Zhao Z, Yu S, Lu YB, Meyer J, Chatterjee G, Deschamps S, Roe BA, Lengyel P. MyoD-dependent induction during myoblast differentiation of p204, a protein also inducible by interferon. Molecular and Cellular Biology. 20: 7024-36. PMID 10958697 DOI: 10.1128/Mcb.20.18.7024-7036.2000  0.458
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