Jose Miguel Ponciano, Ph.D. - Publications

Biology University of Florida, Gainesville, Gainesville, FL, United States 
Statistical and theoretical ecology

29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Ponciano JM, Taper ML, Dennis B. Ecological change points: The strength of density dependence and the loss of history. Theoretical Population Biology. PMID 29705062 DOI: 10.1016/J.Tpb.2018.04.002  1
2017 Zenil-Ferguson R, Ponciano JM, Burleigh JG. Testing the association of phenotypes with polyploidy: An example using herbaceous and woody eudicots. Evolution; International Journal of Organic Evolution. PMID 28295270 DOI: 10.1111/Evo.13226  0.36
2016 Farhadifar R, Ponciano JM, Andersen EC, Needleman DJ, Baer CF. Mutation Is a Sufficient and Robust Predictor of Genetic Variation for Mitotic Spindle Traits in Caenorhabditis elegans. Genetics. PMID 27334268 DOI: 10.1534/Genetics.115.185736  1
2016 Zenil-Ferguson R, Ponciano JM, Burleigh JG. Evaluating the role of genome downsizing and size thresholds from genome size distributions in angiosperms. American Journal of Botany. PMID 27206462 DOI: 10.3732/Ajb.1500408  0.36
2016 Ferguson JM, Carvalho F, Murillo-García O, Taper ML, Ponciano JM. An updated perspective on the role of environmental autocorrelation in animal populations. Theoretical Ecology. 9: 129-148. PMID 27158281 DOI: 10.1007/S12080-015-0276-6  1
2016 Taper ML, Ponciano JM. Evidential statistics as a statistical modern synthesis to support 21st century science Population Ecology. 58: 9-29. DOI: 10.1007/S10144-015-0533-Y  1
2015 Loftie-Eaton W, Yano H, Burleigh S, Simmons RS, Hughes JM, Rogers LM, Hunter SS, Settles ML, Forney LJ, Ponciano JM, Top EM. Evolutionary paths that expand plasmid host-range: implications for spread of antibiotic resistance. Molecular Biology and Evolution. PMID 26668183 DOI: 10.1093/Molbev/Msv339  1
2015 Ferguson JM, Ponciano JM. Evidence and implications of higher-order scaling in the environmental variation of animal population growth. Proceedings of the National Academy of Sciences of the United States of America. 112: 2782-7. PMID 25730852 DOI: 10.1073/Pnas.1416538112  1
2015 Etienne V, Andersen EC, Ponciano JM, Blanton D, Cadavid A, Joyner-Matos J, Matsuba C, Tabman B, Baer CF. The red death meets the abdominal bristle: polygenic mutation for susceptibility to a bacterial pathogen in Caenorhabditis elegans. Evolution; International Journal of Organic Evolution. 69: 508-19. PMID 25495240 DOI: 10.1111/Evo.12585  1
2015 Ferguson JM, Carvalho F, Murillo-García O, Taper ML, Ponciano JM. An updated perspective on the role of environmental autocorrelation in animal populations Theoretical Ecology. DOI: 10.1007/s12080-015-0276-6  1
2014 Dennis B, Ponciano JM. Density-dependent state-space model for population-abundance data with unequal time intervals. Ecology. 95: 2069-76. PMID 25230459 DOI: 10.1890/13-1486.1  1
2014 Ferguson JM, Ponciano JM. Predicting the process of extinction in experimental microcosms and accounting for interspecific interactions in single-species time series. Ecology Letters. 17: 251-9. PMID 24304946 DOI: 10.1111/Ele.12227  1
2014 Ferguson JM, Ponciano JM. Corrigendum to Ferguson and Ponciano (2014) [Ecology Letters (2014) 17 769-769] Ecology Letters. 17: 769-769. DOI: 10.1111/Ele.12283  1
2014 Carvalho F, Ahrens R, Murie D, Ponciano JM, Aires-da-Silva A, Maunder MN, Hazin F. Incorporating specific change points in catchability in fisheries stock assessment models: An alternative approach applied to the blue shark (Prionace glauca) stock in the south Atlantic Ocean Fisheries Research. 154: 135-146. DOI: 10.1016/J.Fishres.2014.01.022  1
2013 Tyerman JG, Ponciano JM, Joyce P, Forney LJ, Harmon LJ. The evolution of antibiotic susceptibility and resistance during the formation of Escherichia coli biofilms in the absence of antibiotics. Bmc Evolutionary Biology. 13: 22. PMID 23356665 DOI: 10.1186/1471-2148-13-22  1
2013 Barbour AB, Ponciano JM, Lorenzen K. Apparent survival estimation from continuous mark-recapture/resighting data Methods in Ecology and Evolution. 4: 846-853. DOI: 10.1111/2041-210X.12059  1
2012 Vander Zanden HB, Bjorndal KA, Mustin W, Ponciano JM, Bolten AB. Inherent variation in stable isotope values and discrimination factors in two life stages of green turtles. Physiological and Biochemical Zoology : Pbz. 85: 431-41. PMID 22902371 DOI: 10.1086/666902  1
2012 Ponciano JM, Burleigh JG, Braun EL, Taper ML. Assessing parameter identifiability in phylogenetic models using data cloning. Systematic Biology. 61: 955-72. PMID 22649181 DOI: 10.1093/Sysbio/Sys055  1
2011 Ponciano JM, Capistrán MA. First principles modeling of nonlinear incidence rates in seasonal epidemics. Plos Computational Biology. 7: e1001079. PMID 21379320 DOI: 10.1371/Journal.Pcbi.1001079  1
2010 Dennis B, Ponciano JM, Taper ML. Replicated sampling increases efficiency in monitoring biological populations. Ecology. 91: 610-20. PMID 20392025 DOI: 10.1890/08-1095.1  1
2009 Ponciano JM, La HJ, Joyce P, Forney LJ. Evolution of diversity in spatially structured Escherichia coli populations. Applied and Environmental Microbiology. 75: 6047-54. PMID 19648364 DOI: 10.1128/Aem.00063-09  1
2009 Ponciano JM, Taper ML, Dennis B, Lele SR. Hierarchical models in ecology: confidence intervals, hypothesis testing, and model selection using data cloning. Ecology. 90: 356-62. PMID 19323219 DOI: 10.1890/08-0967.1  1
2008 De Gelder L, Williams JJ, Ponciano JM, Sota M, Top EM. Adaptive plasmid evolution results in host-range expansion of a broad-host-range plasmid. Genetics. 178: 2179-90. PMID 18430943 DOI: 10.1534/Genetics.107.084475  1
2007 De Gelder L, Ponciano JM, Joyce P, Top EM. Stability of a promiscuous plasmid in different hosts: no guarantee for a long-term relationship. Microbiology (Reading, England). 153: 452-63. PMID 17259616 DOI: 10.1099/Mic.0.2006/001784-0  1
2007 Ponciano JM, De Gelder L, Top EM, Joyce P. The population biology of bacterial plasmids: a hidden Markov model approach. Genetics. 176: 957-68. PMID 17151258 DOI: 10.1534/Genetics.106.061937  1
2006 Dennis B, Ponciano JM, Lele SR, Taper ML, Staples DF. Estimating density dependence, process noise, and observation error Ecological Monographs. 76: 323-341. DOI: 10.1890/0012-9615(2006)76[323:Eddpna]2.0.Co;2  1
2005 Ponciano JM, Vandecasteele FP, Hess TF, Forney LJ, Crawford RL, Joyce P. Use of stochastic models to assess the effect of environmental factors on microbial growth. Applied and Environmental Microbiology. 71: 2355-64. PMID 15870322 DOI: 10.1128/Aem.71.5.2355-2364.2005  1
2005 Joyce P, Abdo Z, Ponciano JM, De Gelder L, Forney LJ, Top EM. Modeling the impact of periodic bottlenecks, unidirectional mutation, and observational error in experimental evolution. Journal of Mathematical Biology. 50: 645-62. PMID 15614551 DOI: 10.1007/S00285-004-0300-8  1
2004 De Gelder L, Ponciano JM, Abdo Z, Joyce P, Forney LJ, Top EM. Combining mathematical models and statistical methods to understand and predict the dynamics of antibiotic-sensitive mutants in a population of resistant bacteria during experimental evolution. Genetics. 168: 1131-44. PMID 15579675 DOI: 10.1534/Genetics.104.033431  1
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