| Year |
Citation |
Score |
| 2024 |
Kortessis N, Ponciano JM, Simon FW, Ferguson JM. Increasing environmental fluctuations can dampen variability of endogenously cycling populations. Royal Society Open Science. 11: 241066. PMID 39698153 DOI: 10.1098/rsos.241066 |
0.695 |
|
| 2024 |
Ponciano JM, Forney LJ, Gómez JP, Ravel J. Inferring stability and persistence in the vaginal microbiome: A stochastic model of ecological dynamics. Research Square. PMID 39678336 DOI: 10.21203/rs.3.rs-5411591/v1 |
0.369 |
|
| 2024 |
Dennis B, Taper ML, Ponciano JM. Evidential Analysis: An Alternative to Hypothesis Testing in Normal Linear Models. Entropy (Basel, Switzerland). 26. PMID 39593909 DOI: 10.3390/e26110964 |
0.776 |
|
| 2024 |
Ponciano JM, Gómez JP, Ravel J, Forney LJ. Inferring stability and persistence in the vaginal microbiome: A stochastic model of ecological dynamics. Biorxiv : the Preprint Server For Biology. PMID 38464272 DOI: 10.1101/2024.03.02.581600 |
0.369 |
|
| 2022 |
Taper ML, Ponciano JM, Dennis B. Entropy, Statistical Evidence, and Scientific Inference: Evidence Functions in Theory and Applications. Entropy (Basel, Switzerland). 24. PMID 36141159 DOI: 10.3390/e24091273 |
0.761 |
|
| 2020 |
Easterday WR, Ponciano JM, Gomez JP, Van Ert MN, Hadfield T, Bagamian K, Blackburn JK, Stenseth NC, Turner WC. Coalescence modeling of intrainfection populations allows estimation of infection parameters in wild populations. Proceedings of the National Academy of Sciences of the United States of America. PMID 32054783 DOI: 10.1073/Pnas.1920790117 |
0.372 |
|
| 2019 |
Dennis B, Ponciano JM, Taper ML, Lele SR. Errors in Statistical Inference Under Model Misspecification: Evidence, Hypothesis Testing, and AIC. Frontiers in Ecology and Evolution. 7. PMID 34295904 DOI: 10.3389/fevo.2019.00372 |
0.785 |
|
| 2019 |
Ponciano JM, Taper ML. Model Projections in Model Space: A Geometric Interpretation of the AIC Allows Estimating the Distance Between Truth and Approximating Models. Frontiers in Ecology and Evolution. 7. PMID 33796541 DOI: 10.3389/fevo.2019.00413 |
0.75 |
|
| 2019 |
Blackburn JK, Ganz HH, Ponciano JM, Turner WC, Ryan SJ, Kamath P, Cizauskas C, Kausrud K, Holt RD, Stenseth NC, Getz WM. Modeling ₀ for Pathogens with Environmental Transmission: Animal Movements, Pathogen Populations, and Local Infectious Zones. International Journal of Environmental Research and Public Health. 16. PMID 30884913 DOI: 10.3390/Ijerph16060954 |
0.302 |
|
| 2019 |
Ponciano JM, Taper ML. Model Projections in Model Space: A Geometric Interpretation of the AIC Allows Estimating the Distance Between Truth and Approximating Models Frontiers in Ecology and Evolution. 7. DOI: 10.3389/Fevo.2019.00413 |
0.761 |
|
| 2019 |
Dennis B, Ponciano JM, Taper ML, Lele SR. Errors in Statistical Inference Under Model Misspecification: Evidence, Hypothesis Testing, and AIC Frontiers in Ecology and Evolution. 7. DOI: 10.3389/Fevo.2019.00372 |
0.791 |
|
| 2018 |
Gomez JP, Nekorchuk DM, Mao L, Ryan SJ, Ponciano JM, Blackburn JK. Decoupling environmental effects and host population dynamics for anthrax, a classic reservoir-driven disease. Plos One. 13: e0208621. PMID 30540815 DOI: 10.1371/Journal.Pone.0208621 |
0.35 |
|
| 2018 |
Gomez JP, Robinson SK, Blackburn JK, Ponciano JM. An efficient extension of N-mixture models for multi-species abundance estimation. Methods in Ecology and Evolution. 9: 340-353. PMID 29892335 DOI: 10.1111/2041-210X.12856 |
0.391 |
|
| 2018 |
Zenil-Ferguson R, Burleigh JG, Ponciano JM. chromploid: An R package for chromosome number evolution across the plant tree of life. Applications in Plant Sciences. 6: e1037. PMID 29732267 DOI: 10.1002/Aps3.1037 |
0.742 |
|
| 2018 |
Ponciano JM, Taper ML, Dennis B. Ecological change points: The strength of density dependence and the loss of history. Theoretical Population Biology. PMID 29705062 DOI: 10.1016/J.Tpb.2018.04.002 |
0.781 |
|
| 2017 |
Ponciano JM. A parametric interpretation of Bayesian Nonparametric Inference from Gene Genealogies: Linking ecological, population genetics and evolutionary processes. Theoretical Population Biology. 122: 128-136. PMID 29174634 DOI: 10.1016/J.Tpb.2017.10.007 |
0.474 |
|
| 2017 |
Zenil-Ferguson R, Ponciano JM, Burleigh JG. Testing the association of phenotypes with polyploidy: An example using herbaceous and woody eudicots. Evolution; International Journal of Organic Evolution. PMID 28295270 DOI: 10.1111/Evo.13226 |
0.758 |
|
| 2016 |
Gil MA, Zill J, Ponciano JM. Context-dependent landscape of fear: algal density elicits risky herbivory in a coral reef. Ecology. PMID 27870010 DOI: 10.1002/Ecy.1668 |
0.312 |
|
| 2016 |
Zenil-Ferguson R, Ponciano JM, Burleigh JG. Evaluating the role of genome downsizing and size thresholds from genome size distributions in angiosperms. American Journal of Botany. PMID 27206462 DOI: 10.3732/Ajb.1500408 |
0.726 |
|
| 2016 |
Ferguson JM, Carvalho F, Murillo-García O, Taper ML, Ponciano JM. An updated perspective on the role of environmental autocorrelation in animal populations. Theoretical Ecology. 9: 129-148. PMID 27158281 DOI: 10.1007/S12080-015-0276-6 |
0.788 |
|
| 2016 |
Martínez AE, Gomez JP, Ponciano JM, Robinson SK. Functional Traits, Flocking Propensity, and Perceived Predation Risk in an Amazonian Understory Bird Community. The American Naturalist. 187: 607-19. PMID 27104993 DOI: 10.1086/685894 |
0.303 |
|
| 2016 |
Taper ML, Ponciano JM. Evidential statistics as a statistical modern synthesis to support 21st century science Population Ecology. 58: 9-29. DOI: 10.1007/S10144-015-0533-Y |
0.759 |
|
| 2015 |
Ferguson JM, Ponciano JM. Evidence and implications of higher-order scaling in the environmental variation of animal population growth. Proceedings of the National Academy of Sciences of the United States of America. 112: 2782-7. PMID 25730852 DOI: 10.1073/Pnas.1416538112 |
0.732 |
|
| 2015 |
Ferguson JM, Carvalho F, Murillo-García O, Taper ML, Ponciano JM. An updated perspective on the role of environmental autocorrelation in animal populations Theoretical Ecology. DOI: 10.1007/s12080-015-0276-6 |
0.753 |
|
| 2014 |
Dennis B, Ponciano JM. Density-dependent state-space model for population-abundance data with unequal time intervals. Ecology. 95: 2069-76. PMID 25230459 DOI: 10.1890/13-1486.1 |
0.668 |
|
| 2014 |
Ferguson JM, Ponciano JM. Predicting the process of extinction in experimental microcosms and accounting for interspecific interactions in single-species time series. Ecology Letters. 17: 251-9. PMID 24304946 DOI: 10.1111/Ele.12227 |
0.714 |
|
| 2014 |
Ferguson JM, Ponciano JM. Corrigendum to Ferguson and Ponciano (2014) [Ecology Letters (2014) 17 769-769] Ecology Letters. 17: 769-769. DOI: 10.1111/Ele.12283 |
0.659 |
|
| 2014 |
Carvalho F, Ahrens R, Murie D, Ponciano JM, Aires-da-Silva A, Maunder MN, Hazin F. Incorporating specific change points in catchability in fisheries stock assessment models: An alternative approach applied to the blue shark (Prionace glauca) stock in the south Atlantic Ocean Fisheries Research. 154: 135-146. DOI: 10.1016/J.Fishres.2014.01.022 |
0.396 |
|
| 2013 |
Tyerman JG, Ponciano JM, Joyce P, Forney LJ, Harmon LJ. The evolution of antibiotic susceptibility and resistance during the formation of Escherichia coli biofilms in the absence of antibiotics. Bmc Evolutionary Biology. 13: 22. PMID 23356665 DOI: 10.1186/1471-2148-13-22 |
0.543 |
|
| 2013 |
Barbour AB, Ponciano JM, Lorenzen K. Apparent survival estimation from continuous mark-recapture/resighting data Methods in Ecology and Evolution. 4: 846-853. DOI: 10.1111/2041-210X.12059 |
0.436 |
|
| 2012 |
Vander Zanden HB, Bjorndal KA, Mustin W, Ponciano JM, Bolten AB. Inherent variation in stable isotope values and discrimination factors in two life stages of green turtles. Physiological and Biochemical Zoology : Pbz. 85: 431-41. PMID 22902371 DOI: 10.1086/666902 |
0.309 |
|
| 2012 |
Ponciano JM, Burleigh JG, Braun EL, Taper ML. Assessing parameter identifiability in phylogenetic models using data cloning. Systematic Biology. 61: 955-72. PMID 22649181 DOI: 10.1093/Sysbio/Sys055 |
0.78 |
|
| 2011 |
Ponciano JM, Capistrán MA. First principles modeling of nonlinear incidence rates in seasonal epidemics. Plos Computational Biology. 7: e1001079. PMID 21379320 DOI: 10.1371/Journal.Pcbi.1001079 |
0.407 |
|
| 2010 |
Dennis B, Ponciano JM, Taper ML. Replicated sampling increases efficiency in monitoring biological populations. Ecology. 91: 610-20. PMID 20392025 DOI: 10.1890/08-1095.1 |
0.786 |
|
| 2009 |
Ponciano JM, La HJ, Joyce P, Forney LJ. Evolution of diversity in spatially structured Escherichia coli populations. Applied and Environmental Microbiology. 75: 6047-54. PMID 19648364 DOI: 10.1128/Aem.00063-09 |
0.351 |
|
| 2009 |
Ponciano JM, Taper ML, Dennis B, Lele SR. Hierarchical models in ecology: confidence intervals, hypothesis testing, and model selection using data cloning. Ecology. 90: 356-62. PMID 19323219 DOI: 10.1890/08-0967.1 |
0.803 |
|
| 2007 |
Ponciano JM, De Gelder L, Top EM, Joyce P. The population biology of bacterial plasmids: a hidden Markov model approach. Genetics. 176: 957-68. PMID 17151258 DOI: 10.1534/Genetics.106.061937 |
0.471 |
|
| 2006 |
Dennis B, Ponciano JM, Lele SR, Taper ML, Staples DF. Estimating density dependence, process noise, and observation error Ecological Monographs. 76: 323-341. DOI: 10.1890/0012-9615(2006)76[323:Eddpna]2.0.Co;2 |
0.787 |
|
| 2005 |
Ponciano JM, Vandecasteele FP, Hess TF, Forney LJ, Crawford RL, Joyce P. Use of stochastic models to assess the effect of environmental factors on microbial growth. Applied and Environmental Microbiology. 71: 2355-64. PMID 15870322 DOI: 10.1128/Aem.71.5.2355-2364.2005 |
0.422 |
|
| 2005 |
Joyce P, Abdo Z, Ponciano JM, De Gelder L, Forney LJ, Top EM. Modeling the impact of periodic bottlenecks, unidirectional mutation, and observational error in experimental evolution. Journal of Mathematical Biology. 50: 645-62. PMID 15614551 DOI: 10.1007/S00285-004-0300-8 |
0.374 |
|
| 2004 |
De Gelder L, Ponciano JM, Abdo Z, Joyce P, Forney LJ, Top EM. Combining mathematical models and statistical methods to understand and predict the dynamics of antibiotic-sensitive mutants in a population of resistant bacteria during experimental evolution. Genetics. 168: 1131-44. PMID 15579675 DOI: 10.1534/Genetics.104.033431 |
0.407 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2019 |
Gomez JP, Ponciano JM, Londoño GA, Robinson SK. The biotic interactions hypothesis partially explains bird species turnover along a lowland Neotropical precipitation gradient Global Ecology and Biogeography. 29: 491-502. DOI: 10.1111/Geb.13047 |
0.285 |
|
| 2015 |
Loftie-Eaton W, Yano H, Burleigh S, Simmons RS, Hughes JM, Rogers LM, Hunter SS, Settles ML, Forney LJ, Ponciano JM, Top EM. Evolutionary paths that expand plasmid host-range: implications for spread of antibiotic resistance. Molecular Biology and Evolution. PMID 26668183 DOI: 10.1093/Molbev/Msv339 |
0.283 |
|
| 2018 |
Brockmann HJ, St Mary CM, Ponciano JM. Discovering structural complexity and its causes: Breeding aggregations in horseshoe crabs Animal Behaviour. 143: 177-191. DOI: 10.1016/J.Anbehav.2017.10.020 |
0.276 |
|
| 2016 |
Farhadifar R, Ponciano JM, Andersen EC, Needleman DJ, Baer CF. Mutation Is a Sufficient and Robust Predictor of Genetic Variation for Mitotic Spindle Traits in Caenorhabditis elegans. Genetics. PMID 27334268 DOI: 10.1534/Genetics.115.185736 |
0.276 |
|
| 2007 |
De Gelder L, Ponciano JM, Joyce P, Top EM. Stability of a promiscuous plasmid in different hosts: no guarantee for a long-term relationship. Microbiology (Reading, England). 153: 452-63. PMID 17259616 DOI: 10.1099/Mic.0.2006/001784-0 |
0.273 |
|
| 2017 |
Loftie-Eaton W, Bashford K, Quinn H, Dong K, Millstein J, Hunter S, Thomason MK, Merrikh H, Ponciano JM, Top EM. Compensatory mutations improve general permissiveness to antibiotic resistance plasmids. Nature Ecology & Evolution. 1: 1354-1363. PMID 29046540 DOI: 10.1038/S41559-017-0243-2 |
0.265 |
|
| 2020 |
Stuart JEM, Holland-Moritz H, Lewis LR, Jean M, Miller SN, McDaniel SF, Fierer N, Ponciano JM, Mack MC. Host Identity as a Driver of Moss-Associated N 2 Fixation Rates in Alaska Ecosystems. 1-18. DOI: 10.1007/S10021-020-00534-3 |
0.261 |
|
| 2015 |
Etienne V, Andersen EC, Ponciano JM, Blanton D, Cadavid A, Joyner-Matos J, Matsuba C, Tabman B, Baer CF. The red death meets the abdominal bristle: polygenic mutation for susceptibility to a bacterial pathogen in Caenorhabditis elegans. Evolution; International Journal of Organic Evolution. 69: 508-19. PMID 25495240 DOI: 10.1111/Evo.12585 |
0.25 |
|
| 2020 |
Jordt H, Stalder T, Kosterlitz O, Ponciano JM, Top EM, Kerr B. Coevolution of host-plasmid pairs facilitates the emergence of novel multidrug resistance. Nature Ecology & Evolution. PMID 32251388 DOI: 10.1038/S41559-020-1170-1 |
0.233 |
|
| 2008 |
De Gelder L, Williams JJ, Ponciano JM, Sota M, Top EM. Adaptive plasmid evolution results in host-range expansion of a broad-host-range plasmid. Genetics. 178: 2179-90. PMID 18430943 DOI: 10.1534/Genetics.107.084475 |
0.232 |
|
| 2024 |
Gaynor ML, Landis JB, O'Connor TK, Laport RG, Doyle JJ, Soltis DE, Ponciano JM, Soltis PS. nQuack: An R package for predicting ploidal level from sequence data using site-based heterozygosity. Applications in Plant Sciences. 12: e11606. PMID 39184199 DOI: 10.1002/aps3.11606 |
0.205 |
|
| 2021 |
Walker MA, Uribasterra M, Asher V, Getz WM, Ryan SJ, Ponciano JM, Blackburn JK. Factors influencing scavenger guilds and scavenging efficiency in Southwestern Montana. Scientific Reports. 11: 4254. PMID 33608624 DOI: 10.1038/s41598-021-83426-3 |
0.202 |
|
| 2019 |
Picardi S, Basille M, Peters W, Ponciano JM, Boitani L, Cagnacci F. Movement responses of roe deer to hunting risk Journal of Wildlife Management. 83: 43-51. DOI: 10.1002/Jwmg.21576 |
0.192 |
|
| 2020 |
Norris MH, Kirpich A, Bluhm AP, Zincke D, Hadfield T, Ponciano JM, Blackburn JK. Convergent evolution of diverse Bacillus anthracis outbreak strains toward altered surface oligosaccharides that modulate anthrax pathogenesis. Plos Biology. 18: e3001052. PMID 33370274 DOI: 10.1371/journal.pbio.3001052 |
0.148 |
|
| 2021 |
Walker MA, Uribasterra M, Asher V, Getz WM, Ryan SJ, Ponciano JM, Blackburn JK. Anthrax Surveillance and the Limited Overlap Between Obligate Scavengers and Endemic Anthrax Zones in the United States. Vector Borne and Zoonotic Diseases (Larchmont, N.Y.). PMID 34077293 DOI: 10.1089/vbz.2020.2747 |
0.144 |
|
| 2020 |
Walker MA, Uribasterra M, Asher V, Ponciano JM, Getz WM, Ryan SJ, Blackburn JK. Ungulate use of locally infectious zones in a re-emerging anthrax risk area. Royal Society Open Science. 7: 200246. PMID 33204443 DOI: 10.1098/rsos.200246 |
0.127 |
|
| 2024 |
Crombie TA, Rajaei M, Saxena AS, Johnson LM, Saber S, Tanny RE, Ponciano JM, Andersen EC, Zhou J, Baer CF. Direct inference of the distribution of fitness effects of spontaneous mutations from recombinant inbred C. elegans mutation accumulation lines. Genetics. PMID 39139098 DOI: 10.1093/genetics/iyae136 |
0.119 |
|
| 2023 |
Metrailer MC, Hoang TTH, Jiranantasak T, Luong T, Hoa LM, Ngoc DB, Pham QT, Pham VK, Hung TTM, Huong VTL, Pham TL, Ponciano JM, Hamerlinck G, Dang DA, Norris MH, et al. Spatial and phylogenetic patterns reveal hidden infection sources of Bacillus anthracis in an anthrax outbreak in son La province, Vietnam. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 105496. PMID 37678701 DOI: 10.1016/j.meegid.2023.105496 |
0.116 |
|
| 2004 |
Almeida FML, Coutinho YA, Martins Simões JA, Ponciano J, Ramalho AJ, Wulck S, Vale MAB. Minimal left-right symmetric models and new Z’ properties at future electron-positron colliders The European Physical Journal C. 38: 115-122. DOI: 10.1140/epjc/s2004-02028-7 |
0.11 |
|
| 2021 |
Holland-Moritz H, Stuart JEM, Lewis LR, Miller SN, Mack MC, Ponciano JM, McDaniel SF, Fierer N. The bacterial communities of Alaskan mosses and their contributions to N-fixation. Microbiome. 9: 53. PMID 33622403 DOI: 10.1186/s40168-021-01001-4 |
0.096 |
|
| 2022 |
Edgar A, Ponciano JM, Martindale MQ. Ctenophores are direct developers that reproduce continuously beginning very early after hatching. Proceedings of the National Academy of Sciences of the United States of America. 119: e2122052119. PMID 35476523 DOI: 10.1073/pnas.2122052119 |
0.094 |
|
| 2023 |
Norris MH, Bluhm AP, Metrailer MC, Jiranantasak T, Kirpich A, Hadfield T, Ponciano JM, Blackburn JK. Beyond the spore, the exosporium sugar anthrose impacts vegetative Bacillus anthracis gene regulation in cis and trans. Scientific Reports. 13: 5060. PMID 36977718 DOI: 10.1038/s41598-023-32162-x |
0.088 |
|
| 2021 |
Stuart JEM, Holland-Moritz H, Jean M, Miller SN, Ponciano JM, McDaniel SF, Mack MC. The relationship of C and N stable isotopes to high-latitude moss-associated N fixation. Oecologia. PMID 34319437 DOI: 10.1007/s00442-021-05005-7 |
0.086 |
|
| 2023 |
Martínez AE, Ponciano JM, Gomez JP, Valqui T, Novoa J, Antezana M, Biscarra G, Camerlenghi E, Carnes BH, Huayanca Munarriz R, Parra E, Plummer IM, Fitzpatrick JW, Robinson SK, Socolar JB, et al. The structure and organisation of an Amazonian bird community remains little changed after nearly four decades in Manu National Park. Ecology Letters. PMID 36604979 DOI: 10.1111/ele.14159 |
0.085 |
|
| 2021 |
Norris MH, Kirpich A, Bluhm AP, Zincke D, Hadfield T, Ponciano JM, Blackburn JK. Correction: Convergent evolution of diverse Bacillus anthracis outbreak strains toward altered surface oligosaccharides that modulate anthrax pathogenesis. Plos Biology. 19: e3001112. PMID 33556066 DOI: 10.1371/journal.pbio.3001112 |
0.077 |
|
| 2023 |
Edgar A, Ponciano JM, Martindale MQ. Reply to Soto-Angel et al.: Is "larva" a natural kind? Phylogenetic thinking provides clarity. Proceedings of the National Academy of Sciences of the United States of America. 120: e2219704120. PMID 36649416 DOI: 10.1073/pnas.2219704120 |
0.044 |
|
| Hide low-probability matches. |