| Year |
Citation |
Score |
| 2024 |
Holland B, Huber KT, Moulton V. A distance-based model for convergent evolution. Journal of Mathematical Biology. 88: 17. PMID 38238584 DOI: 10.1007/s00285-023-02038-9 |
0.472 |
|
| 2023 |
Stevenson J, Holland B, Charleston M, Sumner J. Evaluation of the Relative Performance of the Subflattenings Method for Phylogenetic Inference. Bulletin of Mathematical Biology. 85: 19. PMID 36715842 DOI: 10.1007/s11538-023-01120-z |
0.489 |
|
| 2022 |
Liu Q, Charleston MA, Richards SA, Holland BR. Performance of AIC and BIC in Selecting Partition Models and Mixture Models. Systematic Biology. PMID 36575813 DOI: 10.1093/sysbio/syac081 |
0.429 |
|
| 2022 |
Soewongsono AC, Holland BR, O'Reilly MM. The Shape of Phylogenies Under Phase-Type Distributed Times to Speciation and Extinction. Bulletin of Mathematical Biology. 84: 118. PMID 36103093 DOI: 10.1007/s11538-022-01072-w |
0.545 |
|
| 2022 |
Diao J, M O'Reilly M, Holland B. A subfunctionalisation model of gene family evolution predicts balanced tree shapes. Molecular Phylogenetics and Evolution. 176: 107566. PMID 35810972 DOI: 10.1016/j.ympev.2022.107566 |
0.441 |
|
| 2020 |
Jermiin LS, Catullo RA, Holland BR. A new phylogenetic protocol: dealing with model misspecification and confirmation bias in molecular phylogenetics. Nar Genomics and Bioinformatics. 2: lqaa041. PMID 33575594 DOI: 10.1093/nargab/lqaa041 |
0.338 |
|
| 2020 |
Shore JA, Sumner JG, Holland BR. The impracticalities of multiplicatively-closed codon models: a retreat to linear alternatives. Journal of Mathematical Biology. 81: 549-573. PMID 32710155 DOI: 10.1007/s00285-020-01519-5 |
0.32 |
|
| 2019 |
Crotty SM, Minh BQ, Bean NG, Holland BR, Tuke J, Jermiin LS, von Haeseler A. GHOST: Recovering Historical Signal from Heterotachously-evolved Sequence Alignments. Systematic Biology. PMID 31364711 DOI: 10.1093/sysbio/syz051 |
0.514 |
|
| 2018 |
Mitchell JD, Sumner JG, Holland BR. Distinguishing Between Convergent Evolution and Violation of the Molecular Clock for Three Taxa. Systematic Biology. PMID 29788496 DOI: 10.1093/sysbio/syy038 |
0.687 |
|
| 2017 |
Serdoz S, Egri-Nagy A, Sumner J, Holland BR, Jarvis PD, Tanaka MM, Francis AR. Maximum likelihood estimates of pairwise rearrangement distances. Journal of Theoretical Biology. PMID 28435014 DOI: 10.1016/J.Jtbi.2017.04.015 |
0.405 |
|
| 2017 |
Sumner JG, Taylor A, Holland BR, Jarvis PD. Developing a statistically powerful measure for quartet tree inference using phylogenetic identities and Markov invariants. Journal of Mathematical Biology. PMID 28434023 DOI: 10.1007/s00285-017-1129-2 |
0.425 |
|
| 2016 |
Woodhams MD, Lockhart PJ, Holland BR. Simulating and summarizing sources of gene tree incongruence. Genome Biology and Evolution. PMID 27017528 DOI: 10.1093/gbe/evw065 |
0.363 |
|
| 2014 |
Sumner JG, Jarvis PD, Holland BR. A tensorial approach to the inversion of group-based phylogenetic models. Bmc Evolutionary Biology. 14: 236. PMID 25472897 DOI: 10.1186/s12862-014-0236-6 |
0.493 |
|
| 2013 |
Shavit Grievink L, Penny D, Holland BR. Missing data and influential sites: choice of sites for phylogenetic analysis can be as important as taxon sampling and model choice. Genome Biology and Evolution. 5: 681-7. PMID 23471508 DOI: 10.1093/Gbe/Evt032 |
0.372 |
|
| 2013 |
Blanke A, Greve C, Wipfler B, Beutel RG, Holland BR, Misof B. The identification of concerted convergence in insect heads corroborates palaeoptera Systematic Biology. 62: 250-263. PMID 23179601 DOI: 10.1093/sysbio/sys091 |
0.421 |
|
| 2013 |
Woodhams M, Steane DA, Jones RC, Nicolle D, Moulton V, Holland BR. Novel distances for dollo data. Systematic Biology. 62: 62-77. PMID 22914977 DOI: 10.1093/sysbio/sys071 |
0.397 |
|
| 2013 |
Holland BR, Jarvis PD, Sumner JG. Low-parameter phylogenetic inference under the general markov model. Systematic Biology. 62: 78-92. PMID 22914976 DOI: 10.1093/sysbio/sys072 |
0.441 |
|
| 2012 |
Saurabh K, Holland BR, Gibb GC, Penny D. Gaps: An Elusive Source of Phylogenetic Information Systematic Biology. 61: 1075-1082. PMID 22438330 DOI: 10.1093/Sysbio/Sys043 |
0.351 |
|
| 2012 |
Eytan RI, Hastings PA, Holland BR, Hellberg ME. Reconciling molecules and morphology: molecular systematics and biogeography of Neotropical blennies (Acanthemblemaria). Molecular Phylogenetics and Evolution. 62: 159-73. PMID 22040767 DOI: 10.1016/J.Ympev.2011.09.028 |
0.308 |
|
| 2011 |
Johnson KA, Holland BR, Heslewood MM, Crayn DM. Supermatrices, supertrees and serendipitous scaffolding: inferring a well-resolved, genus-level phylogeny of Styphelioideae (Ericaceae) despite missing data. Molecular Phylogenetics and Evolution. 62: 146-58. PMID 21967784 DOI: 10.1016/j.ympev.2011.09.011 |
0.411 |
|
| 2011 |
White WT, Holland BR. Faster exact maximum parsimony search with XMP. Bioinformatics (Oxford, England). 27: 1359-67. PMID 21444294 DOI: 10.1093/bioinformatics/btr147 |
0.383 |
|
| 2010 |
Holland BR, Spencer HG, Worthy TH, Kennedy M. Identifying cliques of convergent characters: concerted evolution in the cormorants and shags. Systematic Biology. 59: 433-45. PMID 20547779 DOI: 10.1093/Sysbio/Syq023 |
0.389 |
|
| 2010 |
Shavit Grievink L, Penny D, Hendy MD, Holland BR. Phylogenetic tree reconstruction accuracy and model fit when proportions of variable sites change across the tree. Systematic Biology. 59: 288-97. PMID 20525636 DOI: 10.1093/Sysbio/Syq003 |
0.626 |
|
| 2008 |
Shavit Grievink L, Penny D, Hendy MD, Holland BR. LineageSpecificSeqgen: generating sequence data with lineage-specific variation in the proportion of variable sites. Bmc Evolutionary Biology. 8: 317. PMID 19021917 DOI: 10.1186/1471-2148-8-317 |
0.31 |
|
| 2008 |
Shepherd LD, Holland BR, Perrie LR. Conflict amongst chloroplast DNA sequences obscures the phylogeny of a group of Asplenium ferns. Molecular Phylogenetics and Evolution. 48: 176-87. PMID 18462954 DOI: 10.1016/j.ympev.2008.02.023 |
0.433 |
|
| 2007 |
Shavit L, Penny D, Hendy MD, Holland BR. The problem of rooting rapid radiations. Molecular Biology and Evolution. 24: 2400-11. PMID 17720690 DOI: 10.1093/Molbev/Msm178 |
0.622 |
|
| 2007 |
Hendy MD, Holland BR. Upper bounds on maximum likelihood for phylogenetic trees. Bioinformatics (Oxford, England). ii66-72. PMID 14534174 DOI: 10.1093/bioinformatics/btg1062 |
0.625 |
|
| 2006 |
Pierson MJ, Martinez-Arias R, Holland BR, Gemmell NJ, Hurles ME, Penny D. Deciphering past human population movements in Oceania: provably optimal trees of 127 mtDNA genomes. Molecular Biology and Evolution. 23: 1966-75. PMID 16855009 DOI: 10.1093/Molbev/Msl063 |
0.412 |
|
| 2006 |
Auch AF, Henz SR, Holland BR, Göker M. Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences. Bmc Bioinformatics. 7: 350. PMID 16854218 DOI: 10.1186/1471-2105-7-350 |
0.399 |
|
| 2005 |
Kennedy M, Holland BR, Gray RD, Spencer HG. Untangling long branches: identifying conflicting phylogenetic signals using spectral analysis, neighbor-net, and consensus networks. Systematic Biology. 54: 620-33. PMID 16109705 DOI: 10.1080/106351591007462 |
0.34 |
|
| 2005 |
Goremykin VV, Holland B, Hirsch-Ernst KI, Hellwig FH. Analysis of Acorus calamus chloroplast genome and its phylogenetic implications. Molecular Biology and Evolution. 22: 1813-22. PMID 15930156 DOI: 10.1093/molbev/msi173 |
0.53 |
|
| 2005 |
Holland B, Delsuc F, Moulton V. Visualizing conflicting evolutionary hypotheses in large collections of trees: using consensus networks to study the origins of placentals and hexapods. Systematic Biology. 54: 66-76. PMID 15805011 DOI: 10.1080/10635150590906055 |
0.516 |
|
| 2004 |
Wägele JW, Holland B, Dreyer H, Hackethal B. Searching factors causing implausible non-monophyly: ssu rDNA phylogeny of Isopoda Asellota (Crustacea: Peracarida) and faster evolution in marine than in freshwater habitats. Molecular Phylogenetics and Evolution. 28: 536-51. PMID 12927137 DOI: 10.1016/s1055-7903(03)00053-8 |
0.315 |
|
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