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John E. Dueber, Ph.D. - Publications

Affiliations: 
2005 University of California, San Francisco, San Francisco, CA 
Area:
Cellular Signaling Systems
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28/48 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Pyne ME, Kevvai K, Grewal PS, Narcross L, Choi B, Bourgeois L, Dueber JE, Martin VJJ. A yeast platform for high-level synthesis of tetrahydroisoquinoline alkaloids. Nature Communications. 11: 3337. PMID 32620756 DOI: 10.1038/S41467-020-17172-X  0.31
2020 Tou CJ, Schaffer DV, Dueber JE. Targeted diversification in the genome with CRISPR-guided DNA polymerase I. Acs Synthetic Biology. PMID 32485105 DOI: 10.1021/Acssynbio.0C00149  0.337
2020 Ng AH, Nguyen TH, Gómez-Schiavon M, Dods G, Langan RA, Boyken SE, Samson JA, Waldburger LM, Dueber JE, Baker D, El-Samad H. Publisher Correction: Modular and tunable biological feedback control using a de novo protein switch. Nature. PMID 32094663 DOI: 10.1038/S41586-020-2046-X  0.32
2019 Langan RA, Boyken SE, Ng AH, Samson JA, Dods G, Westbrook AM, Nguyen TH, Lajoie MJ, Chen Z, Berger S, Mulligan VK, Dueber JE, Novak WRP, El-Samad H, Baker D. De novo design of bioactive protein switches. Nature. PMID 31341284 DOI: 10.1038/S41586-019-1432-8  0.402
2019 Ng AH, Nguyen TH, Gómez-Schiavon M, Dods G, Langan RA, Boyken SE, Samson JA, Waldburger LM, Dueber JE, Baker D, El-Samad H. Modular and tunable biological feedback control using a de novo protein switch. Nature. PMID 31341280 DOI: 10.1038/S41586-019-1425-7  0.463
2018 Halperin SO, Tou CJ, Wong EB, Modavi C, Schaffer DV, Dueber JE. CRISPR-guided DNA polymerases enable diversification of all nucleotides in a tunable window. Nature. PMID 30069054 DOI: 10.1038/S41586-018-0384-8  0.303
2017 Latimer LN, Dueber JE. Iterative optimization of xylose catabolism in Saccharomyces cerevisiae using combinatorial expression tuning. Biotechnology and Bioengineering. PMID 28165133 DOI: 10.1002/Bit.26262  0.328
2016 DeLoache WC, Russ ZN, Dueber JE. Towards repurposing the yeast peroxisome for compartmentalizing heterologous metabolic pathways. Nature Communications. 7: 11152. PMID 27025684 DOI: 10.1038/Ncomms11152  0.381
2015 Chen R, Rishi HS, Potapov V, Yamada MR, Yeh VJ, Chow T, Cheung CL, Jones AT, Johnson TD, Keating AE, DeLoache WC, Dueber JE. A Barcoding Strategy Enabling Higher-Throughput Library Screening by Microscopy. Acs Synthetic Biology. PMID 26155738 DOI: 10.1021/Acssynbio.5B00060  0.372
2015 Lee ME, DeLoache WC, Cervantes B, Dueber JE. A Highly Characterized Yeast Toolkit for Modular, Multipart Assembly. Acs Synthetic Biology. 4: 975-86. PMID 25871405 DOI: 10.1021/Sb500366V  0.374
2015 Zalatan JG, Lee ME, Almeida R, Gilbert LA, Whitehead EH, La Russa M, Tsai JC, Weissman JS, Dueber JE, Qi LS, Lim WA. Engineering complex synthetic transcriptional programs with CRISPR RNA scaffolds. Cell. 160: 339-50. PMID 25533786 DOI: 10.1016/J.Cell.2014.11.052  0.687
2015 Whitaker WR, Lee H, Arkin AP, Dueber JE. Avoidance of truncated proteins from unintended ribosome binding sites within heterologous protein coding sequences. Acs Synthetic Biology. 4: 249-57. PMID 24931615 DOI: 10.1021/Sb500003X  0.373
2015 Hsiao V, de los Santos EL, Whitaker WR, Dueber JE, Murray RM. Design and implementation of a biomolecular concentration tracker. Acs Synthetic Biology. 4: 150-61. PMID 24847683 DOI: 10.1021/Sb500024B  0.399
2014 Ryan OW, Skerker JM, Maurer MJ, Li X, Tsai JC, Poddar S, Lee ME, DeLoache W, Dueber JE, Arkin AP, Cate JH. Selection of chromosomal DNA libraries using a multiplex CRISPR system. Elife. 3. PMID 25139909 DOI: 10.7554/Elife.03703  0.324
2014 Russ ZN, Dueber JE. Cell-free protein synthesis: search for the happy middle. Biotechnology Journal. 9: 593-4. PMID 24644248 DOI: 10.1002/Biot.201400071  0.345
2014 Benz JP, Protzko RJ, Andrich JM, Bauer S, Dueber JE, Somerville CR. Identification and characterization of a galacturonic acid transporter from Neurospora crassa and its application for Saccharomyces cerevisiae fermentation processes. Biotechnology For Biofuels. 7: 20. PMID 24502254 DOI: 10.1186/1754-6834-7-20  0.309
2013 Lee ME, Aswani A, Han AS, Tomlin CJ, Dueber JE. Expression-level optimization of a multi-enzyme pathway in the absence of a high-throughput assay. Nucleic Acids Research. 41: 10668-78. PMID 24038353 DOI: 10.1093/Nar/Gkt809  0.341
2012 Whitaker WR, Davis SA, Arkin AP, Dueber JE. Engineering robust control of two-component system phosphotransfer using modular scaffolds. Proceedings of the National Academy of Sciences of the United States of America. 109: 18090-5. PMID 23071327 DOI: 10.1073/Pnas.1209230109  0.453
2012 Conrado RJ, Wu GC, Boock JT, Xu H, Chen SY, Lebar T, TurnÅ¡ek J, TomÅ¡ič N, Avbelj M, Gaber R, Koprivnjak T, Mori J, Glavnik V, Vovk I, Benčina M, ... ... Dueber JE, et al. DNA-guided assembly of biosynthetic pathways promotes improved catalytic efficiency. Nucleic Acids Research. 40: 1879-89. PMID 22021385 DOI: 10.1093/Nar/Gkr888  0.379
2012 Lee H, DeLoache WC, Dueber JE. Spatial organization of enzymes for metabolic engineering. Metabolic Engineering. 14: 242-51. PMID 21946160 DOI: 10.1016/J.Ymben.2011.09.003  0.399
2011 Whitaker WR, Dueber JE. Metabolic pathway flux enhancement by synthetic protein scaffolding. Methods in Enzymology. 497: 447-68. PMID 21601098 DOI: 10.1016/B978-0-12-385075-1.00019-6  0.371
2010 Anderson JC, Dueber JE, Leguia M, Wu GC, Goler JA, Arkin AP, Keasling JD. BglBricks: A flexible standard for biological part assembly. Journal of Biological Engineering. 4: 1. PMID 20205762 DOI: 10.1186/1754-1611-4-1  0.386
2010 Moon TS, Dueber JE, Shiue E, Prather KLJ. Use of modular, synthetic scaffolds for improved production of glucaric acid in engineered E. coli Metabolic Engineering. 12: 298-305. PMID 20117231 DOI: 10.1016/J.Ymben.2010.01.003  0.41
2009 Dueber JE, Wu GC, Malmirchegini GR, Moon TS, Petzold CJ, Ullal AV, Prather KLJ, Keasling JD. Synthetic protein scaffolds provide modular control over metabolic flux Nature Biotechnology. 27: 753-759. PMID 19648908 DOI: 10.1038/Nbt.1557  0.403
2008 Sallee NA, Rivera GM, Dueber JE, Vasilescu D, Mullins RD, Mayer BJ, Lim WA. The pathogen protein EspF(U) hijacks actin polymerization using mimicry and multivalency. Nature. 454: 1005-8. PMID 18650806 DOI: 10.1038/Nature07170  0.646
2007 Dueber JE, Mirsky EA, Lim WA. Engineering synthetic signaling proteins with ultrasensitive input/output control. Nature Biotechnology. 25: 660-2. PMID 17515908 DOI: 10.1038/Nbt1308  0.644
2004 Dueber JE, Yeh BJ, Bhattacharyya RP, Lim WA. Rewiring cell signaling: the logic and plasticity of eukaryotic protein circuitry. Current Opinion in Structural Biology. 14: 690-9. PMID 15582393 DOI: 10.1016/J.Sbi.2004.10.004  0.663
2003 Dueber JE, Yeh BJ, Chak K, Lim WA. Reprogramming control of an allosteric signaling switch through modular recombination. Science (New York, N.Y.). 301: 1904-8. PMID 14512628 DOI: 10.1126/Science.1085945  0.716
Low-probability matches (unlikely to be authored by this person)
2013 DeLoache WC, Dueber JE. Compartmentalizing metabolic pathways in organelles. Nature Biotechnology. 31: 320-1. PMID 23563429 DOI: 10.1038/Nbt.2549  0.3
2020 Latimer LN, Russ ZN, Lucas J, Dueber JE. Exploration of acetylation as a base-labile protecting group in Escherichia coli for an indigo precursor. Acs Synthetic Biology. PMID 32886882 DOI: 10.1021/Acssynbio.0C00297  0.297
2015 DeLoache WC, Russ ZN, Narcross L, Gonzales AM, Martin VJ, Dueber JE. An enzyme-coupled biosensor enables (S)-reticuline production in yeast from glucose. Nature Chemical Biology. 11: 465-71. PMID 25984720 DOI: 10.1038/Nchembio.1816  0.292
2014 Latimer LN, Lee ME, Medina-Cleghorn D, Kohnz RA, Nomura DK, Dueber JE. Employing a combinatorial expression approach to characterize xylose utilization in Saccharomyces cerevisiae. Metabolic Engineering. 25: 20-9. PMID 24930894 DOI: 10.1016/J.Ymben.2014.06.002  0.277
2019 Savitskaya J, Protzko RJ, Li FZ, Arkin AP, Dueber JE. Iterative screening methodology enables isolation of strains with improved properties for a FACS-based screen and increased L-DOPA production. Scientific Reports. 9: 5815. PMID 30967567 DOI: 10.1038/S41598-019-41759-0  0.268
2017 Grewal PS, Modavi C, Russ ZN, Harris NC, Dueber JE. Bioproduction of a betalain color palette in Saccharomyces cerevisiae. Metabolic Engineering. 45: 180-188. PMID 29247865 DOI: 10.1016/J.Ymben.2017.12.008  0.266
2018 Hsu TM, Welner DH, Russ ZN, Cervantes B, Prathuri RL, Adams PD, Dueber JE. Employing a biochemical protecting group for a sustainable indigo dyeing strategy. Nature Chemical Biology. PMID 29309053 DOI: 10.1038/Nchembio.2552  0.259
2010 Tipton KA, Dueber J. Shaking up genome engineering. Nature Biotechnology. 28: 812-3. PMID 20697406 DOI: 10.1038/Nbt0810-812  0.258
2018 Protzko RJ, Latimer LN, Martinho Z, de Reus E, Seibert T, Benz JP, Dueber JE. Engineering Saccharomyces cerevisiae for co-utilization of D-galacturonic acid and D-glucose from citrus peel waste. Nature Communications. 9: 5059. PMID 30498222 DOI: 10.1038/S41467-018-07589-W  0.256
2016 Narcross L, Fossati E, Bourgeois L, Dueber JE, Martin VJ. Microbial Factories for the Production of Benzylisoquinoline Alkaloids. Trends in Biotechnology. PMID 26775900 DOI: 10.1016/J.Tibtech.2015.12.005  0.243
2016 Leal RA, Bischof C, Lee YV, Sawano S, McAtee CC, Latimer LN, Russ ZN, Dueber JE, Yu JQ, Sarpong R. Application of a Palladium-Catalyzed C-H Functionalization/Indolization Method to Syntheses of cis-Trikentrin A and Herbindole B. Angewandte Chemie (International Ed. in English). PMID 27570932 DOI: 10.1002/Anie.201605475  0.222
2020 Grewal PS, Samson JA, Baker JJ, Choi B, Dueber JE. Peroxisome compartmentalization of a toxic enzyme improves alkaloid production. Nature Chemical Biology. PMID 33046851 DOI: 10.1038/s41589-020-00668-4  0.213
2019 Protzko RJ, Hach CA, Coradetti ST, Hackhofer MA, Magosch S, Thieme N, Geiselman GM, Arkin AP, Skerker JM, Dueber JE, Benz JP. Genomewide and Enzymatic Analysis Reveals Efficient d-Galacturonic Acid Metabolism in the Basidiomycete Yeast Rhodosporidium toruloides. Msystems. 4. PMID 31848309 DOI: 10.1128/mSystems.00389-19  0.204
2014 Ryan OW, Skerker JM, Maurer MJ, Li X, Tsai JC, Poddar S, Lee ME, DeLoache W, Dueber JE, Arkin AP, Cate JH. Author response: Selection of chromosomal DNA libraries using a multiplex CRISPR system Elife. DOI: 10.7554/Elife.03703.012  0.2
2015 Dueber J. Use of an enzyme-coupled biosensor to engineer a BIA fermentation pathway in yeast Synthetic Biology: Engineering, Evolution, and Design Conference 2015, Seed 2015. 1: 106-119.  0.176
2024 Shen K, Flood JJ, Zhang Z, Ha A, Shy BR, Dueber JE, Douglas SM. Engineering an Escherichia coli strain for production of long single-stranded DNA. Biorxiv : the Preprint Server For Biology. PMID 38464036 DOI: 10.1101/2024.02.27.582394  0.173
2024 Shen K, Flood JJ, Zhang Z, Ha A, Shy BR, Dueber JE, Douglas SM. Engineering an Escherichia coli strain for production of long single-stranded DNA. Nucleic Acids Research. PMID 38499480 DOI: 10.1093/nar/gkae189  0.173
2014 Benz JP, Protzko RJ, Andrich JMS, Bauer S, Dueber JE, Somerville CR. Identification and characterization of a galacturonic acid transporter from Neurospora crassa and its application for Saccharomyces cerevisiae fermentation processes Biotechnology For Biofuels. 7. DOI: 10.1186/1754-6834-7-20  0.108
2017 Benz JP, Protzko RJ, Andrich JMS, Bauer S, Dueber JE, Somerville CR. Correction to: Identification and characterization of a galacturonic acid transporter from Neurospora crassa and its application for Saccharomyces cerevisiae fermentation processes. Biotechnology For Biofuels. 10: 287. PMID 29213326 DOI: 10.1186/s13068-017-0955-1  0.093
2022 Molina RS, Rix G, Mengiste AA, Alvarez B, Seo D, Chen H, Hurtado J, Zhang Q, Donato García-García J, Heins ZJ, Almhjell PJ, Arnold FH, Khalil AS, Hanson AD, Dueber JE, et al. In vivo hypermutation and continuous evolution. Nature Reviews. Methods Primers. 2. PMID 37073402 DOI: 10.1038/s43586-022-00130-w  0.07
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