| Year |
Citation |
Score |
| 2016 |
Schaeffer CE, Figueroa ND, Liu X, Karro JE. phRAIDER: Pattern-Hunter based Rapid Ab Initio Detection of Elementary Repeats. Bioinformatics (Oxford, England). 32: i209-i215. PMID 27307619 DOI: 10.1093/Bioinformatics/Btw258 |
0.418 |
|
| 2014 |
Morton JT, Abrudan P, Figueroa N, Liang C, Karro JE. SCOPE++: sequence classification of homoPolymer emissions. Genomics. 104: 157-62. PMID 25087770 DOI: 10.1016/J.Ygeno.2014.07.005 |
0.362 |
|
| 2014 |
Sreeskandarajan S, Flowers MM, Karro JE, Liang C. A MATLAB-based tool for accurate detection of perfect overlapping and nested inverted repeats in DNA sequences. Bioinformatics (Oxford, England). 30: 887-8. PMID 24215021 DOI: 10.1093/Bioinformatics/Btt651 |
0.339 |
|
| 2012 |
Zhou S, Ji G, Liu X, Li P, Moler J, Karro JE, Liang C. Pattern analysis approach reveals restriction enzyme cutting abnormalities and other cDNA library construction artifacts using raw EST data. Bmc Biotechnology. 12: 16. PMID 22554190 DOI: 10.1186/1472-6750-12-16 |
0.386 |
|
| 2010 |
Rao DM, Moler JC, Ozden M, Zhang Y, Liang C, Karro JE. PEACE: Parallel Environment for Assembly and Clustering of Gene Expression Nucleic Acids Research. 38: W737-W742. PMID 20522511 DOI: 10.1093/Nar/Gkq470 |
0.301 |
|
| 2009 |
Imamura H, Karro JE, Chuang JH. Weak preservation of local neutral substitution rates across mammalian genomes. Bmc Evolutionary Biology. 9: 89. PMID 19416516 DOI: 10.1186/1471-2148-9-89 |
0.397 |
|
| 2008 |
Tyekucheva S, Makova KD, Karro JE, Hardison RC, Miller W, Chiaromonte F. Human-macaque comparisons illuminate variation in neutral substitution rates. Genome Biology. 9: R76. PMID 18447906 DOI: 10.1186/Gb-2008-9-4-R76 |
0.33 |
|
| 2008 |
Karro JE, Peifer M, Hardison RC, Kollmann M, von Grünberg HH. Exponential decay of GC content detected by strand-symmetric substitution rates influences the evolution of isochore structure. Molecular Biology and Evolution. 25: 362-74. PMID 18042807 DOI: 10.1093/Molbev/Msm261 |
0.386 |
|
| 2007 |
Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM, Mardis ER, Remington KA, Strausberg RL, Venter JC, Wilson RK, Batzer MA, Bustamante CD, Eichler EE, Hahn MW, ... ... Karro JE, et al. Evolutionary and biomedical insights from the rhesus macaque genome. Science (New York, N.Y.). 316: 222-34. PMID 17431167 DOI: 10.1126/Science.1139247 |
0.386 |
|
| 2007 |
Karro JE, Yan Y, Zheng D, Zhang Z, Carriero N, Cayting P, Harrrison P, Gerstein M. Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation. Nucleic Acids Research. 35: D55-60. PMID 17099229 DOI: 10.1093/Nar/Gkl851 |
0.376 |
|
| 2006 |
Zhang Z, Carriero N, Zheng D, Karro J, Harrison PM, Gerstein M. PseudoPipe: an automated pseudogene identification pipeline. Bioinformatics (Oxford, England). 22: 1437-9. PMID 16574694 DOI: 10.1093/Bioinformatics/Btl116 |
0.353 |
|
| 2006 |
Bertone P, Trifonov V, Rozowsky JS, Schubert F, Emanuelsson O, Karro J, Kao MY, Snyder M, Gerstein M. Design optimization methods for genomic DNA tiling arrays. Genome Research. 16: 271-81. PMID 16365382 DOI: 10.1101/Gr.4452906 |
0.451 |
|
| 2005 |
Zheng D, Zhang Z, Harrison PM, Karro J, Carriero N, Gerstein M. Integrated pseudogene annotation for human chromosome 22: evidence for transcription. Journal of Molecular Biology. 349: 27-45. PMID 15876366 DOI: 10.1016/J.Jmb.2005.02.072 |
0.374 |
|
| 1998 |
Cohoon JP, Karro JE, Martin WN, Niebel WD, Nagel K. Perturbation method for probabilistic search for the traveling salesperson problem Proceedings of Spie - the International Society For Optical Engineering. 3455: 118-127. DOI: 10.1117/12.326703 |
0.443 |
|
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