Year |
Citation |
Score |
2020 |
Leman JK, Weitzner BD, Lewis SM, Adolf-Bryfogle J, Alam N, Alford RF, Aprahamian M, Baker D, Barlow KA, Barth P, Basanta B, Bender BJ, Blacklock K, Bonet J, Boyken SE, ... ... Khatib F, et al. Macromolecular modeling and design in Rosetta: recent methods and frameworks. Nature Methods. PMID 32483333 DOI: 10.1038/S41592-020-0848-2 |
0.431 |
|
2019 |
Khatib F, Desfosses A, Koepnick B, Flatten J, Popović Z, Baker D, Cooper S, Gutsche I, Horowitz S. Building de novo cryo-electron microscopy structures collaboratively with citizen scientists. Plos Biology. 17: e3000472. PMID 31714936 DOI: 10.1371/Journal.Pbio.3000472 |
0.535 |
|
2019 |
Koepnick B, Flatten J, Husain T, Ford A, Silva DA, Bick MJ, Bauer A, Liu G, Ishida Y, Boykov A, Estep RD, Kleinfelter S, Nørgård-Solano T, Wei L, Players F, ... ... Khatib F, et al. De novo protein design by citizen scientists. Nature. PMID 31168091 DOI: 10.1038/S41586-019-1274-4 |
0.541 |
|
2018 |
Keasar C, McGuffin LJ, Wallner B, Chopra G, Adhikari B, Bhattacharya D, Blake L, Bortot LO, Cao R, Dhanasekaran BK, Dimas I, Faccioli RA, Faraggi E, Ganzynkowicz R, Ghosh S, ... ... Khatib F, et al. An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12. Scientific Reports. 8: 9939. PMID 29967418 DOI: 10.1038/s41598-018-26812-8 |
0.738 |
|
2017 |
Kleffner R, Flatten J, Leaver-Fay A, Baker D, Siegel JB, Khatib F, Cooper S. Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta. Bioinformatics (Oxford, England). PMID 28481970 DOI: 10.1093/Bioinformatics/Btx283 |
0.765 |
|
2016 |
Horowitz S, Koepnick B, Martin R, Tymieniecki A, Winburn AA, Cooper S, Flatten J, Rogawski DS, Koropatkin NM, Hailu TT, Jain N, Koldewey P, Ahlstrom LS, Chapman MR, Sikkema AP, ... ... Khatib F, et al. Corrigendum: Determining crystal structures through crowdsourcing and coursework. Nature Communications. 7: 13392. PMID 27779204 DOI: 10.1038/Ncomms13392 |
0.398 |
|
2016 |
Horowitz S, Koepnick B, Martin R, Tymieniecki A, Winburn AA, Cooper S, Flatten J, Rogawski DS, Koropatkin NM, Hailu TT, Jain N, Koldewey P, Ahlstrom LS, Chapman MR, Sikkema AP, ... ... Khatib F, et al. Determining crystal structures through crowdsourcing and coursework. Nature Communications. 7: 12549. PMID 27633552 DOI: 10.1038/Ncomms12549 |
0.488 |
|
2016 |
Rashid MA, Iqbal S, Khatib F, Hoque MT, Sattar A. Guided macro-mutation in a graded energy based genetic algorithm for protein structure prediction. Computational Biology and Chemistry. 61: 162-177. PMID 26878130 DOI: 10.1016/J.Compbiolchem.2016.01.008 |
0.385 |
|
2016 |
Rashid MA, Khatib F, Hoque MT, Sattar A. An Enhanced Genetic Algorithm for Ab Initio Protein Structure Prediction Ieee Transactions On Evolutionary Computation. 20: 627-644. DOI: 10.1109/Tevc.2015.2505317 |
0.424 |
|
2014 |
Khoury GA, Liwo A, Khatib F, Zhou H, Chopra G, Bacardit J, Bortot LO, Faccioli RA, Deng X, He Y, Krupa P, Li J, Mozolewska MA, Sieradzan AK, Smadbeck J, et al. WeFold: a coopetition for protein structure prediction. Proteins. 82: 1850-68. PMID 24677212 DOI: 10.1002/Prot.24538 |
0.517 |
|
2013 |
Cooper S, Khatib F, Baker D. Increasing public involvement in structural biology. Structure (London, England : 1993). 21: 1482-4. PMID 24010706 DOI: 10.1016/J.Str.2013.08.009 |
0.361 |
|
2012 |
Eiben CB, Siegel JB, Bale JB, Cooper S, Khatib F, Shen BW, Players F, Stoddard BL, Popovic Z, Baker D. Increased Diels-Alderase activity through backbone remodeling guided by Foldit players. Nature Biotechnology. 30: 190-2. PMID 22267011 DOI: 10.1038/Nbt.2109 |
0.654 |
|
2011 |
Gilski M, Kazmierczyk M, Krzywda S, Zábranská H, Cooper S, Popović Z, Khatib F, DiMaio F, Thompson J, Baker D, Pichová I, Jaskolski M. High-resolution structure of a retroviral protease folded as a monomer. Acta Crystallographica. Section D, Biological Crystallography. 67: 907-14. PMID 22101816 DOI: 10.1107/S0907444911035943 |
0.563 |
|
2011 |
Khatib F, Cooper S, Tyka MD, Xu K, Makedon I, Popovic Z, Baker D, Players F. Algorithm discovery by protein folding game players. Proceedings of the National Academy of Sciences of the United States of America. 108: 18949-53. PMID 22065763 DOI: 10.1073/Pnas.1115898108 |
0.497 |
|
2011 |
Khatib F, DiMaio F, Cooper S, Kazmierczyk M, Gilski M, Krzywda S, Zabranska H, Pichova I, Thompson J, Popović Z, Jaskolski M, Baker D. Crystal structure of a monomeric retroviral protease solved by protein folding game players. Nature Structural & Molecular Biology. 18: 1175-7. PMID 21926992 DOI: 10.1038/Nsmb.2119 |
0.618 |
|
2010 |
Cooper S, Khatib F, Treuille A, Barbero J, Lee J, Beenen M, Leaver-Fay A, Baker D, Popovi? Z, Players F. Predicting protein structures with a multiplayer online game. Nature. 466: 756-60. PMID 20686574 DOI: 10.1038/Nature09304 |
0.715 |
|
2010 |
Cooper S, Treuille A, Barbero J, Leaver-Fay A, Tuite K, Khatib F, Snyder AC, Beenen M, Salesin D, Baker D, Popović Z. The challenge of designing scientific discovery games Fdg 2010 - Proceedings of the 5th International Conference On the Foundations of Digital Games. 40-47. DOI: 10.1145/1822348.1822354 |
0.687 |
|
2009 |
Khatib F, Rohl CA, Karplus K. Pokefind: a novel topological filter for use with protein structure prediction. Bioinformatics (Oxford, England). 25: i281-8. PMID 19478000 DOI: 10.1093/Bioinformatics/Btp198 |
0.764 |
|
2006 |
Khatib F, Weirauch MT, Rohl CA. Rapid knot detection and application to protein structure prediction. Bioinformatics (Oxford, England). 22: e252-9. PMID 16873480 DOI: 10.1093/Bioinformatics/Btl236 |
0.732 |
|
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