| Year |
Citation |
Score |
| 2023 |
Naranjo HD, Lebbe L, Cnockaert M, Lassalle F, Too CC, Willems A. Phylogenomics reveals insights into the functional evolution of the genus Agrobacterium and enables the description of Agrobacterium divergens sp. nov. Systematic and Applied Microbiology. 46: 126420. PMID 37031612 DOI: 10.1016/j.syapm.2023.126420 |
0.561 |
|
| 2022 |
Kuzmanović N, Biondi E, Overmann J, Puławska J, Verbarg S, Smalla K, Lassalle F. Genomic analysis provides novel insights into diversification and taxonomy of Allorhizobium vitis (i.e. Agrobacterium vitis). Bmc Genomics. 23: 462. PMID 35733110 DOI: 10.1186/s12864-022-08662-x |
0.494 |
|
| 2021 |
Singh NK, Lavire C, Nesme J, Vial L, Nesme X, Mason CE, Lassalle F, Venkateswaran K. Comparative Genomics of Novel G3 Strains Isolated From the International Space Station and Description of sp. nov. Frontiers in Microbiology. 12: 765943. PMID 34938279 DOI: 10.3389/fmicb.2021.765943 |
0.721 |
|
| 2021 |
Horesh G, Taylor-Brown A, McGimpsey S, Lassalle F, Corander J, Heinz E, Thomson NR. Different evolutionary trends form the twilight zone of the bacterial pan-genome. Microbial Genomics. 7. PMID 34559043 DOI: 10.1099/mgen.0.000670 |
0.65 |
|
| 2020 |
Lassalle F, Dastgheib SMM, Zhao FJ, Zhang J, Verbarg S, Frühling A, Brinkmann H, Osborne TH, Sikorski J, Balloux F, Didelot X, Santini JM, Petersen J. Phylogenomics reveals the basis of adaptation of Pseudorhizobium species to extreme environments and supports a taxonomic revision of the genus. Systematic and Applied Microbiology. 44: 126165. PMID 33360413 DOI: 10.1016/j.syapm.2020.126165 |
0.514 |
|
| 2020 |
Teulet A, Gully D, Rouy Z, Camuel A, Koebnik R, Giraud E, Lassalle F. Phylogenetic distribution and evolutionary dynamics of and T3SS genes in the genus . Microbial Genomics. PMID 32783800 DOI: 10.1099/mgen.0.000407 |
0.461 |
|
| 2020 |
Holt KE, Lassalle F, Wyres KL, Wick R, Mostowy RJ. Diversity and evolution of surface polysaccharide synthesis loci in Enterobacteriales. The Isme Journal. PMID 32249276 DOI: 10.1038/s41396-020-0628-0 |
0.455 |
|
| 2020 |
Lassalle F, Beale MA, Bharucha T, Williams CA, Williams RJ, Cudini J, Goldstein R, Haque T, Depledge DP, Breuer J. Whole genome sequencing of Herpes Simplex Virus 1 directly from human cerebrospinal fluid reveals selective constraints in neurotropic viruses. Virus Evolution. 6: veaa012. PMID 32099667 DOI: 10.1093/Ve/Veaa012 |
0.446 |
|
| 2019 |
Mafakheri H, Taghavi SM, Puławska J, de Lajudie P, Lassalle F, Osdaghi E. Two Novel Genomospecies in the Agrobacterium tumefaciens Species Complex Associated with Rose Crown Gall. Phytopathology. PMID 31298994 DOI: 10.1094/Phyto-05-19-0178-R |
0.424 |
|
| 2019 |
Wegner F, Lassalle F, Depledge DP, Balloux F, Breuer J. Co-evolution of sites under immune selection shapes Epstein-Barr Virus population structure. Molecular Biology and Evolution. PMID 31273385 DOI: 10.1093/Molbev/Msz152 |
0.498 |
|
| 2019 |
de Lajudie PM, Andrews M, Ardley J, Eardly B, Jumas-Bilak E, Kuzmanović N, Lassalle F, Lindström K, Mhamdi R, Martínez-Romero E, Moulin L, Mousavi SA, Nesme X, Peix A, Puławska J, et al. Minimal standards for the description of new genera and species of rhizobia and agrobacteria. International Journal of Systematic and Evolutionary Microbiology. PMID 31140963 DOI: 10.1099/Ijsem.0.003426 |
0.72 |
|
| 2017 |
Lassalle F, Planel R, Penel S, Chapulliot D, Barbe V, Dubost A, Calteau A, Vallenet D, Mornico D, Bigot T, Guéguen L, Vial L, Muller D, Daubin V, Nesme X. Ancestral genome estimation reveals the history of ecological diversification in Agrobacterium. Genome Biology and Evolution. PMID 29220487 DOI: 10.1093/Gbe/Evx255 |
0.715 |
|
| 2017 |
Lassalle F, Spagnoletti M, Fumagalli M, Shaw L, Dyble M, Walker C, Thomas MG, Bamberg Migliano A, Balloux F. Oral microbiomes from hunter-gatherers and traditional farmers reveal shifts in commensal balance and pathogen load linked to diet. Molecular Ecology. PMID 29165844 DOI: 10.1111/Mec.14435 |
0.423 |
|
| 2016 |
Lassalle F, Depledge DP, Reeves MB, Brown AC, Christiansen MT, Tutill HJ, Williams RJ, Einer-Jensen K, Holdstock J, Atkinson C, Brown JR, van Loenen FB, Clark DA, Griffiths PD, Verjans GMGM, et al. Islands of linkage in an ocean of pervasive recombination reveals two-speed evolution of human cytomegalovirus genomes. Virus Evolution. 2: vew017. PMID 30288299 DOI: 10.1093/Ve/Vew017 |
0.496 |
|
| 2016 |
Vieira FG, Lassalle F, Korneliussen TS, Fumagalli M. Improving the estimation of genetic distances from Next-Generation Sequencing data Biological Journal of the Linnean Society. 117: 139-149. DOI: 10.1111/Bij.12511 |
0.35 |
|
| 2015 |
Lassalle F, Muller D, Nesme X. Ecological speciation in bacteria: reverse ecology approaches reveal the adaptive part of bacterial cladogenesis. Research in Microbiology. PMID 26192210 DOI: 10.1016/J.Resmic.2015.06.008 |
0.74 |
|
| 2015 |
Ravenhall M, Škunca N, Lassalle F, Dessimoz C. Inferring horizontal gene transfer. Plos Computational Biology. 11: e1004095. PMID 26020646 DOI: 10.1371/Journal.Pcbi.1004095 |
0.647 |
|
| 2015 |
Lassalle F, Périan S, Bataillon T, Nesme X, Duret L, Daubin V. GC-Content evolution in bacterial genomes: the biased gene conversion hypothesis expands. Plos Genetics. 11: e1004941. PMID 25659072 DOI: 10.1371/Journal.Pgen.1004941 |
0.709 |
|
| 2014 |
Ramírez-Bahena MH, Vial L, Lassalle F, Diel B, Chapulliot D, Daubin V, Nesme X, Muller D. Single acquisition of protelomerase gave rise to speciation of a large and diverse clade within the Agrobacterium/Rhizobium supercluster characterized by the presence of a linear chromid. Molecular Phylogenetics and Evolution. 73: 202-7. PMID 24440816 DOI: 10.1016/J.Ympev.2014.01.005 |
0.732 |
|
| 2013 |
Andres J, Arsène-Ploetze F, Barbe V, Brochier-Armanet C, Cleiss-Arnold J, Coppée JY, Dillies MA, Geist L, Joublin A, Koechler S, Lassalle F, Marchal M, Médigue C, Muller D, Nesme X, et al. Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26. Genome Biology and Evolution. 5: 934-53. PMID 23589360 DOI: 10.1093/Gbe/Evt061 |
0.716 |
|
| 2013 |
Bigot T, Daubin V, Lassalle F, Perrière G. TPMS: a set of utilities for querying collections of gene trees. Bmc Bioinformatics. 14: 109. PMID 23530580 DOI: 10.1186/1471-2105-14-109 |
0.358 |
|
| 2011 |
Lassalle F, Campillo T, Vial L, Baude J, Costechareyre D, Chapulliot D, Shams M, Abrouk D, Lavire C, Oger-Desfeux C, Hommais F, Guéguen L, Daubin V, Muller D, Nesme X. Genomic species are ecological species as revealed by comparative genomics in Agrobacterium tumefaciens. Genome Biology and Evolution. 3: 762-81. PMID 21795751 DOI: 10.1093/Gbe/Evr070 |
0.598 |
|
| Show low-probability matches. |