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Luca MONTICELLI, Ph. D. - Publications

Affiliations: 
Molecular Microbiology and Structural Biochemistry (MMSB) UMR 5086 University of Lyon, France 
Area:
computational biophysics, biological membranes, nanomaterials, molecular modeling, molecular dynamics
Website:
https://mmsb.cnrs.fr/en/team/mobi-en/
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51 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Kiirikki AM, Antila HS, Bort LS, Buslaev P, Favela-Rosales F, Ferreira TM, Fuchs PFJ, Garcia-Fandino R, Gushchin I, Kav B, Kučerka N, Kula P, Kurki M, Kuzmin A, Lalitha A, ... ... Monticelli L, et al. Overlay databank unlocks data-driven analyses of biomolecules for all. Nature Communications. 15: 1136. PMID 38326316 DOI: 10.1038/s41467-024-45189-z  0.417
2023 Hilpert C, Beranger L, Souza PCT, Vainikka PA, Nieto V, Marrink SJ, Monticelli L, Launay G. Facilitating CG Simulations with MAD: The MArtini Database Server. Journal of Chemical Information and Modeling. PMID 36656159 DOI: 10.1021/acs.jcim.2c01375  0.318
2022 Naz Z, Shrestha R, Moin ST, Monticelli L. Interaction of Phthalates with Lipid Bilayer Membranes. The Journal of Physical Chemistry. B. PMID 35708295 DOI: 10.1021/acs.jpcb.2c02007  0.519
2022 Grünewald F, Alessandri R, Kroon PC, Monticelli L, Souza PCT, Marrink SJ. Polyply; a python suite for facilitating simulations of macromolecules and nanomaterials. Nature Communications. 13: 68. PMID 35013176 DOI: 10.1038/s41467-021-27627-4  0.32
2021 Eid J, Jraij A, Greige-Gerges H, Monticelli L. Effect of quercetin on lipid membrane rigidity: assessment by atomic force microscopy and molecular dynamics simulations. Bba Advances. 1: 100018. PMID 37082004 DOI: 10.1016/j.bbadva.2021.100018  0.59
2021 Bochicchio D, Cantu L, Cadario MV, Palchetti L, Natali F, Monticelli L, Rossi G, Del Favero E. Polystyrene perturbs the structure, dynamics, and mechanical properties of DPPC membranes: An experimental and computational study. Journal of Colloid and Interface Science. 605: 110-119. PMID 34311305 DOI: 10.1016/j.jcis.2021.07.069  0.434
2021 Eid J, Greige-Gerges H, Monticelli L, Jraij A. Elastic moduli of lipid membranes: Reproducibility of AFM measures. Chemistry and Physics of Lipids. 234: 105011. PMID 33217391 DOI: 10.1016/j.chemphyslip.2020.105011  0.507
2020 Liekkinen J, de Santos Moreno B, Paananen RO, Vattulainen I, Monticelli L, Bernardino de la Serna J, Javanainen M. Understanding the Functional Properties of Lipid Heterogeneity in Pulmonary Surfactant Monolayers at the Atomistic Level. Frontiers in Cell and Developmental Biology. 8: 581016. PMID 33304898 DOI: 10.3389/fcell.2020.581016  0.466
2020 Caillon L, Nieto V, Gehan P, Omrane M, Rodriguez N, Monticelli L, Thiam AR. Triacylglycerols sequester monotopic membrane proteins to lipid droplets. Nature Communications. 11: 3944. PMID 32769983 DOI: 10.1038/S41467-020-17585-8  0.446
2020 Lavagna E, Barnoud J, Rossi G, Monticelli L. Size-dependent aggregation of hydrophobic nanoparticles in lipid membranes. Nanoscale. PMID 32328605 DOI: 10.1039/d0nr00868k  0.392
2019 Zoni V, Nieto V, Endter LJ, Risselada HJ, Monticelli L, Vanni S. To Bud or Not to Bud: A Perspective on Molecular Simulations of Lipid Droplet Budding. Frontiers in Molecular Biosciences. 6: 124. PMID 31799255 DOI: 10.3389/fmolb.2019.00124  0.563
2019 Chorlay A, Monticelli L, Veríssimo Ferreira J, Ben M'barek K, Ajjaji D, Wang S, Johnson E, Beck R, Omrane M, Beller M, Carvalho P, Rachid Thiam A. Membrane Asymmetry Imposes Directionality on Lipid Droplet Emergence from the ER. Developmental Cell. PMID 31155466 DOI: 10.1016/J.Devcel.2019.05.003  0.469
2017 Bochicchio D, Panizon E, Monticelli L, Rossi G. Interaction of hydrophobic polymers with model lipid bilayers. Scientific Reports. 7: 6357. PMID 28744008 DOI: 10.1038/s41598-017-06668-0  0.54
2017 Chaptal V, Delolme F, Kilburg A, Magnard S, Montigny C, Picard M, Prier C, Monticelli L, Bornert O, Agez M, Ravaud S, Orelle C, Wagner R, Jawhari A, Broutin I, et al. Quantification of Detergents Complexed with Membrane Proteins. Scientific Reports. 7: 41751. PMID 28176812 DOI: 10.1038/Srep41751  0.344
2016 Catte A, Girych M, Javanainen M, Loison C, Melcr J, Miettinen MS, Monticelli L, Määttä J, Oganesyan VS, Ollila OH, Tynkkynen J, Vilov S. Molecular electrometer and binding of cations to phospholipid bilayers. Physical Chemistry Chemical Physics : Pccp. 18: 32560-32569. PMID 27874109 DOI: 10.1039/c6cp04883h  0.309
2016 Rossi G, Monticelli L. Simulating the interaction of lipid membranes with polymer and ligand-coated nanoparticles Advances in Physics: X. 1: 276-296. DOI: 10.1080/23746149.2016.1177468  0.41
2015 Botan A, Favela-Rosales F, Fuchs PF, Javanainen M, Kanduč M, Kulig W, Lamberg A, Loison C, Lyubartsev A, Miettinen MS, Monticelli L, Määttä J, Ollila OH, Retegan M, Róg T, et al. Toward Atomistic Resolution Structure of Phosphatidylcholine Headgroup and Glycerol Backbone at Different Ambient Conditions. The Journal of Physical Chemistry. B. 119: 15075-88. PMID 26509669 DOI: 10.1021/acs.jpcb.5b04878  0.504
2015 Bochicchio D, Panizon E, Ferrando R, Monticelli L, Rossi G. Calculating the free energy of transfer of small solutes into a model lipid membrane: Comparison between metadynamics and umbrella sampling. The Journal of Chemical Physics. 143: 144108. PMID 26472364 DOI: 10.1063/1.4932159  0.443
2015 Panizon E, Bochicchio D, Monticelli L, Rossi G. MARTINI Coarse-Grained Models of Polyethylene and Polypropylene. The Journal of Physical Chemistry. B. 119: 8209-16. PMID 26000469 DOI: 10.1021/acs.jpcb.5b03611  0.367
2015 Barnoud J, Monticelli L. Coarse-grained force fields for molecular simulations. Methods in Molecular Biology (Clifton, N.J.). 1215: 125-49. PMID 25330962 DOI: 10.1007/978-1-4939-1465-4_7  0.392
2015 Bochicchio D, Panizon E, Ferrando R, Monticelli L, Rossi G. Calculating the free energy of transfer of small solutes into a model lipid membrane: Comparison between metadynamics and umbrella sampling Journal of Chemical Physics. 143. DOI: 10.1063/1.4932159  0.442
2014 Rossi G, Barnoud J, Monticelli L. Polystyrene Nanoparticles Perturb Lipid Membranes. The Journal of Physical Chemistry Letters. 5: 241-6. PMID 26276207 DOI: 10.1021/jz402234c  0.49
2014 Rossi G, Monticelli L. Modeling the effect of nano-sized polymer particles on the properties of lipid membranes. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 26: 503101. PMID 25388874 DOI: 10.1088/0953-8984/26/50/503101  0.387
2014 Barnoud J, Rossi G, Marrink SJ, Monticelli L. Hydrophobic compounds reshape membrane domains. Plos Computational Biology. 10: e1003873. PMID 25299598 DOI: 10.1371/journal.pcbi.1003873  0.379
2014 Pan J, Cheng X, Monticelli L, Heberle FA, Kučerka N, Tieleman DP, Katsaras J. The molecular structure of a phosphatidylserine bilayer determined by scattering and molecular dynamics simulations. Soft Matter. 10: 3716-25. PMID 24807693 DOI: 10.1039/C4Sm00066H  0.531
2014 Barnoud J, Rossi G, Monticelli L. Lipid membranes as solvents for carbon nanoparticles. Physical Review Letters. 112: 068102. PMID 24580709 DOI: 10.1103/PhysRevLett.112.068102  0.56
2013 Baoukina S, Monticelli L, Tieleman DP. Interaction of pristine and functionalized carbon nanotubes with lipid membranes. The Journal of Physical Chemistry. B. 117: 12113-23. PMID 24024494 DOI: 10.1021/jp405732k  0.356
2013 Javanainen M, Hammaren H, Monticelli L, Jeon JH, Miettinen MS, Martinez-Seara H, Metzler R, Vattulainen I. Anomalous and normal diffusion of proteins and lipids in crowded lipid membranes. Faraday Discussions. 161: 397-417; discussion . PMID 23805752 DOI: 10.1039/C2Fd20085F  0.343
2013 Castillo N, Monticelli L, Barnoud J, Tieleman DP. Free energy of WALP23 dimer association in DMPC, DPPC, and DOPC bilayers. Chemistry and Physics of Lipids. 169: 95-105. PMID 23415670 DOI: 10.1016/j.chemphyslip.2013.02.001  0.598
2013 Rossi G, Barnoud J, Monticelli L. Partitioning and solubility of C60fullerene in lipid membranes Physica Scripta. 87: 058503. DOI: 10.1088/0031-8949/87/05/058503  0.587
2012 Monticelli L. On Atomistic and Coarse-Grained Models for C60 Fullerene. Journal of Chemical Theory and Computation. 8: 1370-8. PMID 26596752 DOI: 10.1021/ct3000102  0.375
2012 Rossi G, Fuchs PF, Barnoud J, Monticelli L. A coarse-grained MARTINI model of polyethylene glycol and of polyoxyethylene alkyl ether surfactants. The Journal of Physical Chemistry. B. 116: 14353-62. PMID 23137188 DOI: 10.1021/jp3095165  0.393
2012 Monticelli L, Barnoud J, Orlowski A, Vattulainen I. Interaction of C70 fullerene with the Kv1.2 potassium channel. Physical Chemistry Chemical Physics : Pccp. 14: 12526-33. PMID 23087916 DOI: 10.1039/c2cp41117b  0.387
2012 Cramariuc O, Rog T, Javanainen M, Monticelli L, Polishchuk AV, Vattulainen I. Mechanism for translocation of fluoroquinolones across lipid membranes. Biochimica Et Biophysica Acta. 1818: 2563-71. PMID 22664062 DOI: 10.1016/j.bbamem.2012.05.027  0.479
2010 Monticelli L, Tieleman DP, Fuchs PF. Interpretation of 2H-NMR experiments on the orientation of the transmembrane helix WALP23 by computer simulations. Biophysical Journal. 99: 1455-64. PMID 20816057 DOI: 10.1016/j.bpj.2010.05.039  0.306
2010 Javanainen M, Monticelli L, Bernardino de la Serna J, Vattulainen I. Free volume theory applied to lateral diffusion in Langmuir monolayers: atomistic simulations for a protein-free model of lung surfactant. Langmuir : the Acs Journal of Surfaces and Colloids. 26: 15436-44. PMID 20809600 DOI: 10.1021/la102454m  0.356
2010 Kandt C, Monticelli L. Membrane protein dynamics from femtoseconds to seconds. Methods in Molecular Biology (Clifton, N.J.). 654: 423-40. PMID 20665279 DOI: 10.1007/978-1-60761-762-4_22  0.344
2010 Niemelä PS, Miettinen MS, Monticelli L, Hammaren H, Bjelkmar P, Murtola T, Lindahl E, Vattulainen I. Membrane proteins diffuse as dynamic complexes with lipids. Journal of the American Chemical Society. 132: 7574-5. PMID 20469857 DOI: 10.1021/Ja101481B  0.542
2010 Monticelli L, Salonen E, Tieleman DP. Calgary Lipids: A Lipid Force Field for Molecular Simulations Biophysical Journal. 98: 668a. DOI: 10.1016/J.BPJ.2009.12.3671  0.551
2009 Telenius J, Vattulainen I, Monticelli L. Visualization of complex processes in lipid systems using computer simulations and molecular graphics. Methods in Molecular Biology (Clifton, N.J.). 580: 317-38. PMID 19784608 DOI: 10.1007/978-1-60761-325-1_18  0.522
2009 Monticelli L, Salonen E, Ke PC, Vattulainen I. Effects of carbon nanoparticles on lipid membranes: a molecular simulation perspective Soft Matter. 5: 4433. DOI: 10.1039/B912310E  0.484
2009 Monticelli L, Salonen E, Ke PC, Vattulainen I. Interaction of Fullerene with Model Cell Membranes: a Computer Simulation Study Biophysical Journal. 96: 365a-366a. DOI: 10.1016/J.Bpj.2008.12.1968  0.46
2008 Monticelli L, Kandasamy SK, Periole X, Larson RG, Tieleman DP, Marrink SJ. The MARTINI Coarse-Grained Force Field: Extension to Proteins. Journal of Chemical Theory and Computation. 4: 819-34. PMID 26621095 DOI: 10.1021/Ct700324X  0.404
2008 Baoukina S, Monticelli L, Risselada HJ, Marrink SJ, Tieleman DP. The molecular mechanism of lipid monolayer collapse. Proceedings of the National Academy of Sciences of the United States of America. 105: 10803-8. PMID 18669655 DOI: 10.1073/pnas.0711563105  0.54
2008 Wong-Ekkabut J, Baoukina S, Triampo W, Tang IM, Tieleman DP, Monticelli L. Computer simulation study of fullerene translocation through lipid membranes. Nature Nanotechnology. 3: 363-8. PMID 18654548 DOI: 10.1038/Nnano.2008.130  0.574
2007 Baoukina S, Monticelli L, Marrink SJ, Tieleman DP. Pressure-area isotherm of a lipid monolayer from molecular dynamics simulations. Langmuir : the Acs Journal of Surfaces and Colloids. 23: 12617-23. PMID 17973510 DOI: 10.1021/la702286h  0.434
2007 Wong-Ekkabut J, Xu Z, Triampo W, Tang IM, Tieleman DP, Monticelli L. Effect of lipid peroxidation on the properties of lipid bilayers: a molecular dynamics study. Biophysical Journal. 93: 4225-36. PMID 17766354 DOI: 10.1529/Biophysj.107.112565  0.521
2007 Baoukina S, Monticelli L, Amrein M, Tieleman DP. The molecular mechanism of monolayer-bilayer transformations of lung surfactant from molecular dynamics simulations. Biophysical Journal. 93: 3775-82. PMID 17704166 DOI: 10.1529/Biophysj.107.113399  0.438
2006 Tieleman DP, Maccallum JL, Ash WL, Kandt C, Xu Z, Monticelli L. Membrane protein simulations with a united-atom lipid and all-atom protein model: lipid-protein interactions, side chain transfer free energies and model proteins. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 18: S1221-34. PMID 21690838 DOI: 10.1088/0953-8984/18/28/S07  0.498
2004 Mukhopadhyay P, Monticelli L, Tieleman DP. Molecular dynamics simulation of a palmitoyl-oleoyl phosphatidylserine bilayer with Na+ counterions and NaCl. Biophysical Journal. 86: 1601-9. PMID 14990486 DOI: 10.1016/S0006-3495(04)74227-7  0.47
2002 Monticelli L, Pedini D, Schievano E, Mammi S, Peggion E. Interaction of bombolitin II with a membrane-mimetic environment: an NMR and molecular dynamics simulation approach. Biophysical Chemistry. 101: 577-91. PMID 12488028 DOI: 10.1016/s0301-4622(02)00174-6  0.336
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