| Year |
Citation |
Score |
| 2024 |
Małecka EM, Woodson SA. RNA compaction and iterative scanning for small RNA targets by the Hfq chaperone. Nature Communications. 15: 2069. PMID 38453956 DOI: 10.1038/s41467-024-46316-6 |
0.524 |
|
| 2024 |
Hao Y, Hulscher RM, Zinshteyn B, Woodson SA. Late consolidation of rRNA structure during co-transcriptional assembly in by time-resolved DMS footprinting. Biorxiv : the Preprint Server For Biology. PMID 38260533 DOI: 10.1101/2024.01.10.574868 |
0.395 |
|
| 2023 |
Lou Y, Woodson SA. Co-transcriptional folding of the glmS ribozyme enables a rapid response to metabolite. Nucleic Acids Research. PMID 38000388 DOI: 10.1093/nar/gkad1120 |
0.454 |
|
| 2023 |
Rodgers ML, Sun Y, Woodson SA. Ribosomal Protein S12 Hastens Nucleation of Co-Transcriptional Ribosome Assembly. Biomolecules. 13. PMID 37371531 DOI: 10.3390/biom13060951 |
0.472 |
|
| 2023 |
Rodgers ML, O'Brien B, Woodson SA. Small RNAs and Hfq capture unfolded RNA target sites during transcription. Molecular Cell. 83: 1489-1501.e5. PMID 37116495 DOI: 10.1016/j.molcel.2023.04.003 |
0.431 |
|
| 2022 |
Sarni SH, Roca J, Du C, Jia M, Li H, Damjanovic A, Małecka EM, Wysocki VH, Woodson SA. Intrinsically disordered interaction network in an RNA chaperone revealed by native mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 119: e2208780119. PMID 36375072 DOI: 10.1073/pnas.2208780119 |
0.556 |
|
| 2022 |
Cai H, Roca J, Zhao YF, Woodson SA. Dynamic Refolding of OxyS sRNA by the Hfq RNA Chaperone. Journal of Molecular Biology. 167776. PMID 35934049 DOI: 10.1016/j.jmb.2022.167776 |
0.586 |
|
| 2022 |
Małecka EM, Hua B, Woodson SA. Single-Molecule FRET Studies of RNA Structural Rearrangements and RNA-RNA Interactions. Methods in Molecular Biology (Clifton, N.J.). 2518: 271-289. PMID 35666451 DOI: 10.1007/978-1-0716-2421-0_16 |
0.549 |
|
| 2022 |
Roca J, Santiago-Frangos A, Woodson SA. Diversity of bacterial small RNAs drives competitive strategies for a mutual chaperone. Nature Communications. 13: 2449. PMID 35508531 DOI: 10.1038/s41467-022-30211-z |
0.84 |
|
| 2022 |
Papenfort K, Woodson SA, Schmitz RA, Winkler WC. Special Issue: Regulating with RNA in Microbes: In conjunction with the 6th Meeting on Regulating with RNA in Bacteria and Archaea. Molecular Microbiology. 117: 1-3. PMID 35040218 DOI: 10.1111/mmi.14867 |
0.446 |
|
| 2021 |
Li PP, Moulick R, Feng H, Sun X, Arbez N, Jin J, Marque LO, Hedglen E, Chan HYE, Ross CA, Pulst SM, Margolis RL, Woodson S, Rudnicki DD. RNA Toxicity and Perturbation of rRNA Processing in Spinocerebellar Ataxia Type 2. Movement Disorders : Official Journal of the Movement Disorder Society. PMID 34390268 DOI: 10.1002/mds.28729 |
0.315 |
|
| 2021 |
Rodgers ML, Woodson SA. A roadmap for rRNA folding and assembly during transcription. Trends in Biochemical Sciences. PMID 34176739 DOI: 10.1016/j.tibs.2021.05.009 |
0.603 |
|
| 2021 |
Rodgers ML, Woodson SA. A roadmap for rRNA folding and assembly during transcription. Trends in Biochemical Sciences. PMID 34176739 DOI: 10.1016/j.tibs.2021.05.009 |
0.603 |
|
| 2021 |
Malecka EM, Bassani F, Dendooven T, Sonnleitner E, Rozner M, Albanese TG, Resch A, Luisi B, Woodson S, Bläsi U. Stabilization of Hfq-mediated translational repression by the co-repressor Crc in Pseudomonas aeruginosa. Nucleic Acids Research. PMID 34139006 DOI: 10.1093/nar/gkab510 |
0.526 |
|
| 2021 |
Małecka EM, Woodson SA. Stepwise sRNA targeting of structured bacterial mRNAs leads to abortive annealing. Molecular Cell. PMID 33705712 DOI: 10.1016/j.molcel.2021.02.019 |
0.436 |
|
| 2020 |
Korman A, Sun H, Hua B, Yang H, Capilato JN, Paul R, Panja S, Ha T, Greenberg MM, Woodson SA. Light-controlled twister ribozyme with single-molecule detection resolves RNA function in time and space. Proceedings of the National Academy of Sciences of the United States of America. PMID 32430319 DOI: 10.1073/Pnas.2003425117 |
0.457 |
|
| 2020 |
Panja S, Małecka EM, Santiago-Frangos A, Woodson SA. Quantitative Analysis of RNA Chaperone Activity by Native Gel Electrophoresis and Fluorescence Spectroscopy. Methods in Molecular Biology (Clifton, N.J.). 2106: 19-39. PMID 31889249 DOI: 10.1007/978-1-0716-0231-7_2 |
0.842 |
|
| 2019 |
Rodgers ML, Woodson SA. Transcription Increases the Cooperativity of Ribonucleoprotein Assembly. Cell. 179: 1370-1381.e12. PMID 31761536 DOI: 10.1016/j.cell.2019.11.007 |
0.498 |
|
| 2019 |
Rodgers ML, Hao Y, Woodson SA. A newborn RNA switches its fate. Nature Chemical Biology. 15: 1031-1032. PMID 31636436 DOI: 10.1038/s41589-019-0391-6 |
0.455 |
|
| 2019 |
Razi A, Davis JH, Hao Y, Jahagirdar D, Thurlow B, Basu K, Jain N, Gomez-Blanco J, Britton RA, Vargas J, Guarné A, Woodson SA, Williamson JR, Ortega J. Role of Era in assembly and homeostasis of the ribosomal small subunit. Nucleic Acids Research. PMID 31265110 DOI: 10.1093/nar/gkz571 |
0.573 |
|
| 2019 |
Jones CP, Panja S, Woodson SA, Ferré-D'Amaré AR. Monitoring co-transcriptional folding of riboswitches through helicase unwinding. Methods in Enzymology. 623: 209-227. PMID 31239047 DOI: 10.1016/Bs.Mie.2019.05.031 |
0.538 |
|
| 2019 |
Santiago-Frangos A, Fröhlich KS, Jeliazkov JR, Małecka EM, Marino G, Gray JJ, Luisi BF, Woodson SA, Hardwick SW. Hfq structure reveals a conserved mechanism of RNA annealing regulation. Proceedings of the National Academy of Sciences of the United States of America. PMID 31076551 DOI: 10.1073/pnas.1814428116 |
0.828 |
|
| 2018 |
Roh JH, Kilburn D, Behrouzi R, Sung W, Briber RM, Woodson S. Effects of Preferential Counterion Interactions on the Specificity of RNA Folding. The Journal of Physical Chemistry Letters. PMID 30211556 DOI: 10.1021/Acs.Jpclett.8B02086 |
0.844 |
|
| 2018 |
Hua B, Panja S, Wang Y, Woodson S, Ha T. Mimicking Co-Transcriptional RNA Folding Using a Superhelicase. Journal of the American Chemical Society. PMID 30063835 DOI: 10.1016/J.Bpj.2017.11.2401 |
0.637 |
|
| 2018 |
Woodson SA, Panja S, Santiago-Frangos A. Proteins That Chaperone RNA Regulation. Microbiology Spectrum. 6. PMID 30051798 DOI: 10.1128/microbiolspec.RWR-0026-2018 |
0.845 |
|
| 2018 |
Hao Y, Bohon J, Hulscher R, Rappé MC, Gupta S, Adilakshmi T, Woodson SA. Time-Resolved Hydroxyl Radical Footprinting of RNA with X-Rays. Current Protocols in Nucleic Acid Chemistry. 73: e52. PMID 29927103 DOI: 10.1002/cpnc.52 |
0.476 |
|
| 2018 |
Sharma IM, Rappé MC, Addepalli B, Grabow WW, Zhuang Z, Abeysirigunawardena SC, Limbach PA, Jaeger L, Woodson SA. A metastable rRNA junction essential for bacterial 30S biogenesis. Nucleic Acids Research. 46: 5182-5194. PMID 29850893 DOI: 10.1093/Nar/Gky120 |
0.832 |
|
| 2018 |
Santiago-Frangos A, Woodson SA. Hfq chaperone brings speed dating to bacterial sRNA. Wiley Interdisciplinary Reviews. Rna. e1475. PMID 29633565 DOI: 10.1002/wrna.1475 |
0.857 |
|
| 2018 |
Djapgne L, Panja S, Brewer L, Gans J, Kane MA, Woodson SA, Oglesby-Sherrouse AG. ThePrrF1 and PrrF2 small regulatory RNAs (sRNAs) promote 2-alkyl-4-quinolone production through redundant regulation of themRNA. Journal of Bacteriology. PMID 29507088 DOI: 10.1128/Jb.00704-17 |
0.349 |
|
| 2017 |
Woodson SA. Probing RNA Folding Pathways by RNA Fingerprinting. Current Protocols in Nucleic Acid Chemistry. 70: 11.4.1-11.4.19. PMID 28921495 DOI: 10.1002/cpnc.36 |
0.546 |
|
| 2017 |
Abeysirigunawardena SC, Kim H, Lai J, Ragunathan K, Rappé MC, Luthey-Schulten Z, Ha T, Woodson SA. Evolution of protein-coupled RNA dynamics during hierarchical assembly of ribosomal complexes. Nature Communications. 8: 492. PMID 28887451 DOI: 10.1038/S41467-017-00536-1 |
0.826 |
|
| 2017 |
Santiago-Frangos A, Jeliazkov JR, Gray JJ, Woodson SA. Acidic C-terminal domains autoregulate the RNA chaperone Hfq. Elife. 6. PMID 28826489 DOI: 10.7554/Elife.27049 |
0.837 |
|
| 2017 |
Stagno JR, Liu Y, Bhandari YR, Conrad CE, Panja S, Swain M, Fan L, Nelson G, Li C, Wendel DR, White TA, Coe JD, Wiedorn MO, Knoska J, Oberthuer D, ... ... Woodson SA, et al. Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography Acta Crystallographica Section a Foundations and Advances. 73: a92-a92. DOI: 10.1107/S0108767317099081 |
0.403 |
|
| 2016 |
Stagno JR, Liu Y, Bhandari YR, Conrad CE, Panja S, Swain M, Fan L, Nelson G, Li C, Wendel DR, White TA, Coe JD, Wiedorn MO, Knoska J, Oberthuer D, ... ... Woodson SA, et al. Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography. Nature. PMID 27841871 DOI: 10.1038/Nature20599 |
0.383 |
|
| 2016 |
Santiago-Frangos A, Kavita K, Schu DJ, Gottesman S, Woodson SA. C-terminal domain of the RNA chaperone Hfq drives sRNA competition and release of target RNA. Proceedings of the National Academy of Sciences of the United States of America. PMID 27681631 DOI: 10.1073/Pnas.1613053113 |
0.843 |
|
| 2016 |
Kilburn D, Behrouzi R, Lee HT, Sarkar K, Briber RM, Woodson SA. Entropic stabilization of folded RNA in crowded solutions measured by SAXS. Nucleic Acids Research. PMID 27378777 DOI: 10.1093/Nar/Gkw597 |
0.853 |
|
| 2016 |
Zheng A, Panja S, Woodson SA. Arginine patch predicts the RNA annealing activity of Hfq from Gram negative and Gram positive bacteria. Journal of Molecular Biology. PMID 27049793 DOI: 10.1016/j.jmb.2016.03.027 |
0.505 |
|
| 2016 |
Hulscher RM, Bohon J, Rappé MC, Gupta S, D'Mello R, Sullivan M, Ralston CY, Chance MR, Woodson SA. Probing the Structure of Ribosome Assembly Intermediates In vivo using DMS and Hydroxyl Radical Footprinting. Methods (San Diego, Calif.). PMID 27016143 DOI: 10.1016/J.Ymeth.2016.03.012 |
0.518 |
|
| 2015 |
Roh JH, Tyagi M, Aich P, Kim K, Briber RM, Woodson SA. Charge screening in RNA: an integral route for dynamical enhancements. Soft Matter. PMID 26430908 DOI: 10.1039/C5Sm02084K |
0.334 |
|
| 2015 |
Abeysirigunawardena SC, Woodson SA. Differential effects of ribosomal proteins and Mg2+ ions on a conformational switch during 30S ribosome 5'-domain assembly. Rna (New York, N.Y.). 21: 1859-65. PMID 26354770 DOI: 10.1261/Rna.051292.115 |
0.796 |
|
| 2015 |
Panja S, Santiago-Frangos A, Schu DJ, Gottesman S, Woodson SA. Acidic residues in the Hfq chaperone increase the selectivity of sRNA binding and annealing. Journal of Molecular Biology. PMID 26196441 DOI: 10.1016/J.Jmb.2015.07.010 |
0.821 |
|
| 2015 |
Panja S, Paul R, Greenberg MM, Woodson SA. Light-Triggered RNA Annealing by an RNA Chaperone. Angewandte Chemie (International Ed. in English). 54: 7281-4. PMID 25959666 DOI: 10.1002/Anie.201501658 |
0.511 |
|
| 2015 |
Woodson SA. RNA folding retrospective: lessons from ribozymes big and small. Rna (New York, N.Y.). 21: 502-3. PMID 25780113 DOI: 10.1261/rna.051110.115 |
0.535 |
|
| 2015 |
Panja S, Woodson SA. Fluorescence reporters for Hfq oligomerization and RNA annealing. Methods in Molecular Biology (Clifton, N.J.). 1259: 369-83. PMID 25579597 DOI: 10.1007/978-1-4939-2214-7_22 |
0.524 |
|
| 2015 |
Lee HT, Kilburn D, Behrouzi R, Briber RM, Woodson SA. Molecular crowding overcomes the destabilizing effects of mutations in a bacterial ribozyme. Nucleic Acids Research. 43: 1170-6. PMID 25541198 DOI: 10.1093/Nar/Gku1335 |
0.822 |
|
| 2015 |
Sarkar K, Hua B, Ha T, Woodson SA. Kinetic Destabilization through Single Point Mutations Emphasizes the Critical Role Played by Coupled Tertiary Interactions in the Folding of the Azoarcus Ribozyme Biophysical Journal. 108: 236a. DOI: 10.1016/J.Bpj.2014.11.1304 |
0.46 |
|
| 2014 |
Peng Y, Curtis JE, Fang X, Woodson SA. Structural model of an mRNA in complex with the bacterial chaperone Hfq. Proceedings of the National Academy of Sciences of the United States of America. 111: 17134-9. PMID 25404287 DOI: 10.1073/Pnas.1410114111 |
0.442 |
|
| 2014 |
Hua B, Han KY, Zhou R, Kim H, Shi X, Abeysirigunawardena SC, Jain A, Singh D, Aggarwal V, Woodson SA, Ha T. An improved surface passivation method for single-molecule studies. Nature Methods. 11: 1233-6. PMID 25306544 DOI: 10.1038/Nmeth.3143 |
0.713 |
|
| 2014 |
Kim H, Abeysirigunawarden SC, Chen K, Mayerle M, Ragunathan K, Luthey-Schulten Z, Ha T, Woodson SA. Protein-guided RNA dynamics during early ribosome assembly. Nature. 506: 334-8. PMID 24522531 DOI: 10.1038/Nature13039 |
0.866 |
|
| 2014 |
Desai R, Kilburn D, Lee HT, Woodson SA. Increased ribozyme activity in crowded solutions. The Journal of Biological Chemistry. 289: 2972-7. PMID 24337582 DOI: 10.1074/jbc.M113.527861 |
0.76 |
|
| 2014 |
Peng Y, Soper TJ, Woodson SA. Positional effects of AAN motifs in rpoS regulation by sRNAs and Hfq. Journal of Molecular Biology. 426: 275-85. PMID 24051417 DOI: 10.1016/J.Jmb.2013.08.026 |
0.821 |
|
| 2013 |
Clatterbuck Soper SF, Dator RP, Limbach PA, Woodson SA. In vivo X-ray footprinting of pre-30S ribosomes reveals chaperone-dependent remodeling of late assembly intermediates. Molecular Cell. 52: 506-16. PMID 24207057 DOI: 10.1016/J.Molcel.2013.09.020 |
0.836 |
|
| 2013 |
Kilburn D, Roh JH, Behrouzi R, Briber RM, Woodson SA. Crowders perturb the entropy of RNA energy landscapes to favor folding. Journal of the American Chemical Society. 135: 10055-63. PMID 23773075 DOI: 10.1021/Ja4030098 |
0.831 |
|
| 2013 |
Panja S, Schu DJ, Woodson SA. Conserved arginines on the rim of Hfq catalyze base pair formation and exchange. Nucleic Acids Research. 41: 7536-46. PMID 23771143 DOI: 10.1093/nar/gkt521 |
0.572 |
|
| 2013 |
Mayerle M, Woodson SA. Specific contacts between protein S4 and ribosomal RNA are required at multiple stages of ribosome assembly. Rna (New York, N.Y.). 19: 574-85. PMID 23431409 DOI: 10.1261/Rna.037028.112 |
0.854 |
|
| 2013 |
Lai J, Chen K, Kim H, Ha T, Woodson S, Luthey-Schulten Z. How R-Proteins Stabilize the R-RNA during Early Stages of Bacterial Ribosome Biogenesis Biophysical Journal. 104: 334a. DOI: 10.1016/J.Bpj.2012.11.1855 |
0.443 |
|
| 2013 |
Micura R, Kreutz C, Breuker K, Woodson SA. ChemInform Abstract: A Personal Perspective on Chemistry-Driven RNA Research Cheminform. 44: no-no. DOI: 10.1002/chin.201350268 |
0.383 |
|
| 2012 |
Panja S, Woodson SA. Hfq proximity and orientation controls RNA annealing. Nucleic Acids Research. 40: 8690-7. PMID 22761405 DOI: 10.1093/nar/gks618 |
0.534 |
|
| 2012 |
Peng Y, Soper TJ, Woodson SA. RNase footprinting of protein binding sites on an mRNA target of small RNAs. Methods in Molecular Biology (Clifton, N.J.). 905: 213-24. PMID 22736006 DOI: 10.1007/978-1-61779-949-5_13 |
0.876 |
|
| 2012 |
Behrouzi R, Woodson SA. Rendering RNA in 3D. Nature Methods. 9: 552-3. PMID 22669652 DOI: 10.1038/Nmeth.2045 |
0.811 |
|
| 2012 |
Koculi E, Cho SS, Desai R, Thirumalai D, Woodson SA. Folding path of P5abc RNA involves direct coupling of secondary and tertiary structures. Nucleic Acids Research. 40: 8011-20. PMID 22641849 DOI: 10.1093/Nar/Gks468 |
0.836 |
|
| 2012 |
Behrouzi R, Roh JH, Kilburn D, Briber RM, Woodson SA. Cooperative tertiary interaction network guides RNA folding. Cell. 149: 348-57. PMID 22500801 DOI: 10.1016/J.Cell.2012.01.057 |
0.838 |
|
| 2012 |
Chen K, Eargle J, Lai J, Kim H, Abeysirigunawardena S, Mayerle M, Woodson S, Ha T, Luthey-Schulten Z. Assembly of the five-way junction in the ribosomal small subunit using hybrid MD-Gō simulations. The Journal of Physical Chemistry. B. 116: 6819-31. PMID 22458631 DOI: 10.1021/Jp212614B |
0.833 |
|
| 2012 |
Panja S, Woodson SA. Hexamer to monomer equilibrium of E. coli Hfq in solution and its impact on RNA annealing. Journal of Molecular Biology. 417: 406-12. PMID 22326348 DOI: 10.1016/j.jmb.2012.02.009 |
0.586 |
|
| 2012 |
Behrouzi R, Woodson SA. Native Architecture Encodes Cooperativity and Specificity in RNA Folding Intermediates Biophysical Journal. 102: 645a-646a. DOI: 10.1016/J.Bpj.2011.11.3513 |
0.842 |
|
| 2012 |
Kim H, Abeysirigunawardena S, Mayerle M, Ragunathan K, Chen K, Eargle J, Luthey-Schulten Z, Woodson S, Ha T. Single Molecule Views of the Ribosome Assembly Biophysical Journal. 102: 645a. DOI: 10.1016/J.Bpj.2011.11.3512 |
0.861 |
|
| 2012 |
Woodson SA, Kilburn D, Ho Roh J, Briber R. RNA Folding in Crowded Solutions Biophysical Journal. 102: 3a-4a. DOI: 10.1016/J.Bpj.2011.11.034 |
0.564 |
|
| 2011 |
Roh JH, Tyagi M, Briber RM, Woodson SA, Sokolov AP. The dynamics of unfolded versus folded tRNA: the role of electrostatic interactions. Journal of the American Chemical Society. 133: 16406-9. PMID 21936532 DOI: 10.1021/Ja207667U |
0.391 |
|
| 2011 |
Mayerle M, Bellur DL, Woodson SA. Slow formation of stable complexes during coincubation of minimal rRNA and ribosomal protein S4. Journal of Molecular Biology. 412: 453-65. PMID 21821049 DOI: 10.1016/J.Jmb.2011.07.048 |
0.813 |
|
| 2011 |
Woodson SA. RNA folding pathways and the self-assembly of ribosomes. Accounts of Chemical Research. 44: 1312-9. PMID 21714483 DOI: 10.1021/ar2000474 |
0.632 |
|
| 2011 |
Soper TJ, Doxzen K, Woodson SA. Major role for mRNA binding and restructuring in sRNA recruitment by Hfq. Rna (New York, N.Y.). 17: 1544-50. PMID 21705431 DOI: 10.1261/Rna.2767211 |
0.863 |
|
| 2011 |
Hopkins JF, Panja S, Woodson SA. Rapid binding and release of Hfq from ternary complexes during RNA annealing. Nucleic Acids Research. 39: 5193-202. PMID 21378124 DOI: 10.1093/Nar/Gkr062 |
0.831 |
|
| 2011 |
Kilburn D, Roh JH, Guo L, Briber RM, Woodson SA. Exploring the Folding Landscape of RNA in Crowded Solutions Biophysical Journal. 100: 236a. DOI: 10.1016/J.Bpj.2010.12.1506 |
0.499 |
|
| 2011 |
Behrouzi R, Roh JH, Kilburn D, Briber RM, Woodson SA. Tertiary Interactions Maintain the Balance of Stability, Folding Efficiency and Speed in a Large Catalytic Bacterial RNA Biophysical Journal. 100: 236a. DOI: 10.1016/J.Bpj.2010.12.1505 |
0.855 |
|
| 2011 |
Panja S, Hopkins JF, Woodson SA. The RNA Chaperone Hfq Makes a Transient Ternary Complex with RNA Strands to Facilitate RNA Annealing Biophysical Journal. 100: 231a. DOI: 10.1016/J.Bpj.2010.12.1475 |
0.83 |
|
| 2010 |
Woodson SA. Taming free energy landscapes with RNA chaperones. Rna Biology. 7: 677-86. PMID 21045544 DOI: 10.4161/rna.7.6.13615 |
0.61 |
|
| 2010 |
Roh JH, Guo L, Kilburn JD, Briber RM, Irving T, Woodson SA. Multistage collapse of a bacterial ribozyme observed by time-resolved small-angle X-ray scattering. Journal of the American Chemical Society. 132: 10148-54. PMID 20597502 DOI: 10.1021/Ja103867P |
0.45 |
|
| 2010 |
Kilburn D, Roh JH, Guo L, Briber RM, Woodson SA. Molecular crowding stabilizes folded RNA structure by the excluded volume effect. Journal of the American Chemical Society. 132: 8690-6. PMID 20521820 DOI: 10.1021/Ja101500G |
0.484 |
|
| 2010 |
Soper T, Mandin P, Majdalani N, Gottesman S, Woodson SA. Positive regulation by small RNAs and the role of Hfq. Proceedings of the National Academy of Sciences of the United States of America. 107: 9602-7. PMID 20457943 DOI: 10.1073/Pnas.1004435107 |
0.85 |
|
| 2010 |
Woodson SA. Compact intermediates in RNA folding. Annual Review of Biophysics. 39: 61-77. PMID 20192764 DOI: 10.1146/annurev.biophys.093008.131334 |
0.6 |
|
| 2010 |
Woodson S, Adilakshmi T, Ramaswamy P, Soper SF, Bellur DL. Assembly of the 30s Ribosome From the RNA Folding Perspective Biophysical Journal. 98: 13a. DOI: 10.1016/J.Bpj.2009.12.080 |
0.87 |
|
| 2010 |
Woodson S. Ribosome repair by protein exchange Biopolymers. 93: iii. DOI: 10.1002/Bip.21394 |
0.333 |
|
| 2009 |
Woodson SA, Koculi E. Analysis of RNA folding by native polyacrylamide gel electrophoresis. Methods in Enzymology. 469: 189-208. PMID 20946790 DOI: 10.1016/S0076-6879(09)69009-1 |
0.81 |
|
| 2009 |
Adilakshmi T, Soper SF, Woodson SA. Structural analysis of RNA in living cells by in vivo synchrotron X-ray footprinting. Methods in Enzymology. 468: 239-58. PMID 20946773 DOI: 10.1016/S0076-6879(09)68012-5 |
0.433 |
|
| 2009 |
Moghaddam S, Caliskan G, Chauhan S, Hyeon C, Briber RM, Thirumalai D, Woodson SA. Metal ion dependence of cooperative collapse transitions in RNA. Journal of Molecular Biology. 393: 753-64. PMID 19712681 DOI: 10.1016/J.Jmb.2009.08.044 |
0.664 |
|
| 2009 |
Hopkins JF, Panja S, McNeil SA, Woodson SA. Effect of salt and RNA structure on annealing and strand displacement by Hfq. Nucleic Acids Research. 37: 6205-13. PMID 19671524 DOI: 10.1093/Nar/Gkp646 |
0.836 |
|
| 2009 |
Ramaswamy P, Woodson SA. Global stabilization of rRNA structure by ribosomal proteins S4, S17, and S20. Journal of Molecular Biology. 392: 666-77. PMID 19616559 DOI: 10.1016/J.Jmb.2009.07.032 |
0.72 |
|
| 2009 |
Roh JH, Briber RM, Damjanovic A, Thirumalai D, Woodson SA, Sokolov AP. Dynamics of tRNA at different levels of hydration. Biophysical Journal. 96: 2755-62. PMID 19348758 DOI: 10.1016/J.Bpj.2008.12.3895 |
0.337 |
|
| 2009 |
Ramaswamy P, Woodson SA. S16 throws a conformational switch during assembly of 30S 5' domain. Nature Structural & Molecular Biology. 16: 438-45. PMID 19343072 DOI: 10.1038/Nsmb.1585 |
0.734 |
|
| 2009 |
Bellur DL, Woodson SA. A minimized rRNA-binding site for ribosomal protein S4 and its implications for 30S assembly. Nucleic Acids Research. 37: 1886-96. PMID 19190093 DOI: 10.1093/Nar/Gkp036 |
0.833 |
|
| 2009 |
Chauhan S, Behrouzi R, Rangan P, Woodson SA. Structural rearrangements linked to global folding pathways of the Azoarcus group I ribozyme. Journal of Molecular Biology. 386: 1167-78. PMID 19154736 DOI: 10.1016/J.Jmb.2008.12.075 |
0.841 |
|
| 2008 |
Woodson SA. RNA folding and ribosome assembly. Current Opinion in Chemical Biology. 12: 667-73. PMID 18935976 DOI: 10.1016/j.cbpa.2008.09.024 |
0.356 |
|
| 2008 |
Bell AJ, Chauhan S, Woodson SA, Kallenbach NR. Interactions of recombinant HMGB proteins with branched RNA substrates. Biochemical and Biophysical Research Communications. 377: 262-7. PMID 18845125 DOI: 10.1016/J.Bbrc.2008.09.131 |
0.749 |
|
| 2008 |
Adilakshmi T, Bellur DL, Woodson SA. Concurrent nucleation of 16S folding and induced fit in 30S ribosome assembly. Nature. 455: 1268-72. PMID 18784650 DOI: 10.1038/Nature07298 |
0.857 |
|
| 2008 |
Soper TJ, Woodson SA. The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA. Rna (New York, N.Y.). 14: 1907-17. PMID 18658123 DOI: 10.1261/Rna.1110608 |
0.856 |
|
| 2008 |
Chauhan S, Woodson SA. Tertiary interactions determine the accuracy of RNA folding. Journal of the American Chemical Society. 130: 1296-303. PMID 18179212 DOI: 10.1021/Ja076166I |
0.736 |
|
| 2008 |
Kuznetsov SV, Ren CC, Woodson SA, Ansari A. Loop dependence of the stability and dynamics of nucleic acid hairpins. Nucleic Acids Research. 36: 1098-112. PMID 18096625 DOI: 10.1093/Nar/Gkm1083 |
0.435 |
|
| 2007 |
Lease RA, Adilakshmi T, Heilman-Miller S, Woodson SA. Communication between RNA folding domains revealed by folding of circularly permuted ribozymes. Journal of Molecular Biology. 373: 197-210. PMID 17765924 DOI: 10.1016/j.jmb.2007.07.007 |
0.427 |
|
| 2007 |
Koculi E, Hyeon C, Thirumalai D, Woodson SA. Charge density of divalent metal cations determines RNA stability. Journal of the American Chemical Society. 129: 2676-82. PMID 17295487 DOI: 10.1021/Ja068027R |
0.804 |
|
| 2006 |
Jackson SA, Koduvayur S, Woodson SA. Self-splicing of a group I intron reveals partitioning of native and misfolded RNA populations in yeast. Rna (New York, N.Y.). 12: 2149-59. PMID 17135489 DOI: 10.1261/rna.184206 |
0.539 |
|
| 2006 |
Adilakshmi T, Lease RA, Woodson SA. Hydroxyl radical footprinting in vivo: mapping macromolecular structures with synchrotron radiation. Nucleic Acids Research. 34: e64. PMID 16682443 DOI: 10.1093/nar/gkl291 |
0.345 |
|
| 2006 |
Koculi E, Thirumalai D, Woodson SA. Counterion charge density determines the position and plasticity of RNA folding transition states. Journal of Molecular Biology. 359: 446-54. PMID 16626736 DOI: 10.1016/J.Jmb.2006.03.031 |
0.803 |
|
| 2006 |
Caliskan G, Briber RM, Thirumalai D, Garcia-Sakai V, Woodson SA, Sokolov AP. Dynamic transition in tRNA is solvent induced. Journal of the American Chemical Society. 128: 32-3. PMID 16390107 DOI: 10.1021/Ja056444I |
0.321 |
|
| 2005 |
Hopkins JF, Woodson SA. Molecular beacons as probes of RNA unfolding under native conditions. Nucleic Acids Research. 33: 5763-70. PMID 16221975 DOI: 10.1093/Nar/Gki877 |
0.801 |
|
| 2005 |
Chauhan S, Caliskan G, Briber RM, Perez-Salas U, Rangan P, Thirumalai D, Woodson SA. RNA tertiary interactions mediate native collapse of a bacterial group I ribozyme. Journal of Molecular Biology. 353: 1199-209. PMID 16214167 DOI: 10.1016/J.Jmb.2005.09.015 |
0.816 |
|
| 2005 |
Adilakshmi T, Ramaswamy P, Woodson SA. Protein-independent folding pathway of the 16S rRNA 5' domain. Journal of Molecular Biology. 351: 508-19. PMID 16023137 DOI: 10.1016/J.Jmb.2005.06.020 |
0.751 |
|
| 2005 |
Woodson SA. Structure and assembly of group I introns. Current Opinion in Structural Biology. 15: 324-30. PMID 15922592 DOI: 10.1016/j.sbi.2005.05.007 |
0.502 |
|
| 2005 |
Woodson SA. Metal ions and RNA folding: a highly charged topic with a dynamic future. Current Opinion in Chemical Biology. 9: 104-9. PMID 15811793 DOI: 10.1016/j.cbpa.2005.02.004 |
0.391 |
|
| 2004 |
Lease RA, Woodson SA. Cycling of the Sm-like protein Hfq on the DsrA small regulatory RNA. Journal of Molecular Biology. 344: 1211-23. PMID 15561140 DOI: 10.1016/j.jmb.2004.10.006 |
0.572 |
|
| 2004 |
Koduvayur SP, Woodson SA. Intracellular folding of the Tetrahymena group I intron depends on exon sequence and promoter choice. Rna (New York, N.Y.). 10: 1526-32. PMID 15337845 DOI: 10.1261/rna.7880404 |
0.5 |
|
| 2004 |
Koculi E, Lee NK, Thirumalai D, Woodson SA. Folding of the Tetrahymena ribozyme by polyamines: importance of counterion valence and size. Journal of Molecular Biology. 341: 27-36. PMID 15312760 DOI: 10.1016/J.Jmb.2004.06.008 |
0.831 |
|
| 2004 |
Rangan P, Masquida B, Westhof E, Woodson SA. Architecture and folding mechanism of the Azoarcus Group I Pre-tRNA. Journal of Molecular Biology. 339: 41-51. PMID 15123419 DOI: 10.1016/J.Jmb.2004.03.059 |
0.707 |
|
| 2004 |
Perez-Salas UA, Rangan P, Krueger S, Briber RM, Thirumalai D, Woodson SA. Compaction of a bacterial group I ribozyme coincides with the assembly of core helices. Biochemistry. 43: 1746-53. PMID 14769052 DOI: 10.1021/Bi035642O |
0.689 |
|
| 2003 |
Rangan P, Woodson SA. Structural requirement for Mg2+ binding in the group I intron core. Journal of Molecular Biology. 329: 229-38. PMID 12758072 DOI: 10.1016/S0022-2836(03)00430-3 |
0.642 |
|
| 2003 |
Heilman-Miller SL, Woodson SA. Effect of transcription on folding of the Tetrahymena ribozyme. Rna (New York, N.Y.). 9: 722-33. PMID 12756330 DOI: 10.1261/rna.5200903 |
0.513 |
|
| 2003 |
Heilman-Miller SL, Woodson SA. Perturbed folding kinetics of circularly permuted RNAs with altered topology. Journal of Molecular Biology. 328: 385-94. PMID 12691747 DOI: 10.1016/S0022-2836(03)00304-8 |
0.405 |
|
| 2003 |
Rangan P, Masquida B, Westhof E, Woodson SA. Assembly of core helices and rapid tertiary folding of a small bacterial group I ribozyme. Proceedings of the National Academy of Sciences of the United States of America. 100: 1574-9. PMID 12574513 DOI: 10.1073/Pnas.0337743100 |
0.718 |
|
| 2002 |
Woodson SA. Folding mechanisms of group I ribozymes: role of stability and contact order. Biochemical Society Transactions. 30: 1166-9. PMID 12440997 DOI: 10.1042/ |
0.536 |
|
| 2002 |
Jackson S, Cannone J, Lee J, Gutell R, Woodson S. Distribution of rRNA introns in the three-dimensional structure of the ribosome. Journal of Molecular Biology. 323: 35-52. PMID 12368097 DOI: 10.1016/S0022-2836(02)00895-1 |
0.398 |
|
| 2001 |
Woodson SA, Deras ML, Brenowitz M. Time-resolved hydroxyl radical footprinting of RNA with X-rays. Current Protocols in Nucleic Acid Chemistry / Edited by Serge L. Beaucage ... [Et Al.]. Unit 11.6. PMID 18428832 DOI: 10.1002/0471142700.Nc1106S06 |
0.386 |
|
| 2001 |
Woodson SA. Probing RNA folding pathways by RNA fingerprinting. Current Protocols in Nucleic Acid Chemistry / Edited by Serge L. Beaucage ... [Et Al.]. Unit 11.4. PMID 18428830 DOI: 10.1002/0471142700.nc1104s02 |
0.548 |
|
| 2001 |
Heilman-Miller SL, Pan J, Thirumalai D, Woodson SA. Role of counterion condensation in folding of the Tetrahymena ribozyme. II. Counterion-dependence of folding kinetics. Journal of Molecular Biology. 309: 57-68. PMID 11491301 DOI: 10.1006/Jmbi.2001.4660 |
0.487 |
|
| 2001 |
Thirumalai D, Lee N, Woodson SA, Klimov D. Early events in RNA folding. Annual Review of Physical Chemistry. 52: 751-62. PMID 11326079 DOI: 10.1146/Annurev.Physchem.52.1.751 |
0.523 |
|
| 2001 |
Heilman-Miller SL, Thirumalai D, Woodson SA. Role of counterion condensation in folding of the Tetrahymena ribozyme. I. Equilibrium stabilization by cations. Journal of Molecular Biology. 306: 1157-66. PMID 11237624 DOI: 10.1006/Jmbi.2001.4437 |
0.385 |
|
| 2000 |
Silverman SK, Deras ML, Woodson SA, Scaringe SA, Cech TR. Multiple folding pathways for the P4-P6 RNA domain. Biochemistry. 39: 12465-75. PMID 11015228 DOI: 10.1021/Bi000828Y |
0.719 |
|
| 2000 |
Cao Y, Woodson SA. Refolding of rRNA exons enhances dissociation of the Tetrahymena intron. Rna (New York, N.Y.). 6: 1248-56. PMID 10999602 DOI: 10.1017/S1355838200000893 |
0.351 |
|
| 2000 |
Deras ML, Brenowitz M, Ralston CY, Chance MR, Woodson SA. Folding mechanism of the Tetrahymena ribozyme P4-P6 domain. Biochemistry. 39: 10975-85. PMID 10998234 DOI: 10.1021/Bi0010118 |
0.421 |
|
| 2000 |
Woodson SA. Recent insights on RNA folding mechanisms from catalytic RNA. Cellular and Molecular Life Sciences : Cmls. 57: 796-808. PMID 10892344 DOI: 10.1007/s000180050042 |
0.575 |
|
| 2000 |
Thirumalai D, Woodson SA. Maximizing RNA folding rates: a balancing act. Rna (New York, N.Y.). 6: 790-4. PMID 10864039 DOI: 10.1017/S1355838200000522 |
0.545 |
|
| 2000 |
Woodson SA. Compact but disordered states of RNA. Nature Structural Biology. 7: 349-52. PMID 10802725 DOI: 10.1038/75106 |
0.371 |
|
| 2000 |
Pan J, Deras ML, Woodson SA. Fast folding of a ribozyme by stabilizing core interactions: evidence for multiple folding pathways in RNA. Journal of Molecular Biology. 296: 133-44. PMID 10656822 DOI: 10.1006/jmbi.1999.3439 |
0.445 |
|
| 1999 |
Pan J, Woodson SA. The effect of long-range loop-loop interactions on folding of the Tetrahymena self-splicing RNA. Journal of Molecular Biology. 294: 955-65. PMID 10588899 DOI: 10.1006/jmbi.1999.3298 |
0.379 |
|
| 1999 |
Nikolcheva T, Woodson SA. Facilitation of group I splicing in vivo: misfolding of the Tetrahymena IVS and the role of ribosomal RNA exons. Journal of Molecular Biology. 292: 557-67. PMID 10497021 DOI: 10.1006/jmbi.1999.3083 |
0.473 |
|
| 1999 |
Pan J, Thirumalai D, Woodson SA. Magnesium-dependent folding of self-splicing RNA: exploring the link between cooperativity, thermodynamics, and kinetics. Proceedings of the National Academy of Sciences of the United States of America. 96: 6149-54. PMID 10339556 DOI: 10.1073/Pnas.96.11.6149 |
0.456 |
|
| 1998 |
Sclavi B, Woodson S, Sullivan M, Chance M, Brenowitz M. Following the folding of RNA with time-resolved synchrotron X-ray footprinting. Methods in Enzymology. 295: 379-402. PMID 9750229 DOI: 10.1016/S0076-6879(98)95050-9 |
0.376 |
|
| 1998 |
Pan J, Woodson SA. Folding intermediates of a self-splicing RNA: mispairing of the catalytic core. Journal of Molecular Biology. 280: 597-609. PMID 9677291 DOI: 10.1006/jmbi.1998.1901 |
0.537 |
|
| 1998 |
Woodson SA, Leontis NB. Structure and dynamics of ribosomal RNA. Current Opinion in Structural Biology. 8: 294-300. PMID 9666324 DOI: 10.1016/S0959-440X(98)80061-4 |
0.563 |
|
| 1998 |
Sclavi B, Sullivan M, Chance MR, Brenowitz M, Woodson SA. RNA folding at millisecond intervals by synchrotron hydroxyl radical footprinting. Science (New York, N.Y.). 279: 1940-3. PMID 9506944 DOI: 10.1126/Science.279.5358.1940 |
0.428 |
|
| 1998 |
Roman J, Woodson SA. Integration of the Tetrahymena group I intron into bacterial rRNA by reverse splicing in vivo. Proceedings of the National Academy of Sciences of the United States of America. 95: 2134-9. PMID 9482851 DOI: 10.1073/pnas.95.5.2134 |
0.456 |
|
| 1997 |
Pan J, Thirumalai D, Woodson SA. Folding of RNA involves parallel pathways. Journal of Molecular Biology. 273: 7-13. PMID 9367740 DOI: 10.1006/jmbi.1997.1311 |
0.53 |
|
| 1997 |
Nikolcheva T, Woodson SA. Association of a group I intron with its splice junction in 50S ribosomes: implications for intron toxicity. Rna (New York, N.Y.). 3: 1016-27. PMID 9292500 |
0.512 |
|
| 1997 |
Sclavi B, Woodson S, Sullivan M, Chance MR, Brenowitz M. Time-resolved synchrotron X-ray "footprinting", a new approach to the study of nucleic acid structure and function: application to protein-DNA interactions and RNA folding. Journal of Molecular Biology. 266: 144-59. PMID 9054977 DOI: 10.1006/Jmbi.1996.0775 |
0.496 |
|
| 1996 |
Emerick VL, Pan J, Woodson SA. Analysis of rate-determining conformational changes during self-splicing of the Tetrahymena intron. Biochemistry. 35: 13469-77. PMID 8873616 DOI: 10.1021/bi960865i |
0.522 |
|
| 1996 |
Woodson SA. Macromolecular complexes: how RNA and protein get together. Current Biology : Cb. 6: 23-5. PMID 8805212 |
0.575 |
|
| 1996 |
Thirumalai D, Woodson SA. Kinetics of Folding of Proteins and RNA Accounts of Chemical Research. 29: 433-439. |
0.552 |
|
| 1995 |
Rocheleau GA, Woodson SA. Enhanced self-splicing of Physarum polycephalum intron 3 by a second group I intron. Rna (New York, N.Y.). 1: 183-93. PMID 7585248 |
0.31 |
|
| 1995 |
Zhang F, Ramsay ES, Woodson SA. In vivo facilitation of Tetrahymena group I intron splicing in Escherichia coli pre-ribosomal RNA. Rna (New York, N.Y.). 1: 284-92. PMID 7489500 |
0.563 |
|
| 1994 |
Emerick VL, Woodson SA. Fingerprinting the folding of a group I precursor RNA. Proceedings of the National Academy of Sciences of the United States of America. 91: 9675-9. PMID 7937871 DOI: 10.1073/pnas.91.21.9675 |
0.55 |
|
| 1993 |
Woodson SA, Emerick VL. An alternative helix in the 26S rRNA promotes excision and integration of the Tetrahymena intervening sequence. Molecular and Cellular Biology. 13: 1137-45. PMID 8380892 |
0.525 |
|
| 1993 |
Chen X, Woodson SA, Burrows CJ, Rokita SE. A highly sensitive probe for guanine N7 in folded structures of RNA: application to tRNA(Phe) and Tetrahymena group I intron. Biochemistry. 32: 7610-6. PMID 8347571 DOI: 10.1021/Bi00081A002 |
0.491 |
|
| 1993 |
Emerick VL, Woodson SA. Self-splicing of the Tetrahymena pre-rRNA is decreased by misfolding during transcription. Biochemistry. 32: 14062-7. PMID 8268185 DOI: 10.1021/bi00213a040 |
0.554 |
|
| 1992 |
Woodson SA. Exon sequences distant from the splice junction are required for efficient self-splicing of the Tetrahymena IVS. Nucleic Acids Research. 20: 4027-32. PMID 1508687 |
0.457 |
|
| 1991 |
Woodson SA, Cech TR. Alternative secondary structures in the 5' exon affect both forward and reverse self-splicing of the Tetrahymena intervening sequence RNA. Biochemistry. 30: 2042-50. PMID 1998665 DOI: 10.1021/Bi00222A006 |
0.628 |
|
| 1990 |
Woodson SA, Cech TR, Young M, Perriman R, Kelly L, Graf L, Llewellyn D, Gerlach W, Plückthun A, Collins J. Symposium 3: Non-enzymatic biocatalysts in nature and biotechnology. Fresenius' Journal of Analytical Chemistry. 337: 12-14. PMID 32226232 DOI: 10.1007/Bf00325711 |
0.374 |
|
| 1990 |
Woodson SA, Cech TR, Young M, Perriman R, Kelly L, Graf L, Llewellyn D, Gerlach W, Plückthun A, Collins J. Symposium 3: Non-enzymatic biocatalysts in nature and biotechnology Fresenius' Journal of Analytical Chemistry. 337: 12-14. DOI: 10.1007/BF00325711 |
0.374 |
|
| 1989 |
Teng SP, Woodson SA, Crothers DM. DNA sequence specificity of mitomycin cross-linking. Biochemistry. 28: 3901-7. PMID 2751999 DOI: 10.1021/Bi00435A041 |
0.443 |
|
| 1989 |
Woodson SA, Crothers DM. Conformation of a bulge-containing oligomer from a hot-spot sequence by NMR and energy minimization. Biopolymers. 28: 1149-77. PMID 2730946 DOI: 10.1002/bip.360280608 |
0.487 |
|
| 1989 |
Woodson SA, Cech TR. Reverse self-splicing of the tetrahymena group I intron: implication for the directionality of splicing and for intron transposition. Cell. 57: 335-45. PMID 2702692 DOI: 10.1016/0092-8674(89)90971-9 |
0.602 |
|
| 1988 |
Woodson SA, Crothers DM. Structural model for an oligonucleotide containing a bulged guanosine by NMR and energy minimization. Biochemistry. 27: 3130-41. PMID 3390425 DOI: 10.1021/Bi00409A004 |
0.494 |
|
| 1988 |
Woodson SA, Crothers DM. Binding of 9-aminoacridine to bulged-base DNA oligomers from a frame-shift hot spot. Biochemistry. 27: 8904-14. PMID 3233212 DOI: 10.1021/Bi00425A006 |
0.527 |
|
| 1988 |
Woodson SA, Crothers DM. Preferential location of bulged guanosine internal to a G.C tract by 1H NMR. Biochemistry. 27: 436-45. PMID 2964870 DOI: 10.1021/Bi00401A065 |
0.458 |
|
| 1987 |
Woodson SA, Crothers DM. Proton nuclear magnetic resonance studies on bulge-containing DNA oligonucleotides from a mutational hot-spot sequence. Biochemistry. 26: 904-12. PMID 3567151 DOI: 10.1021/Bi00377A035 |
0.502 |
|
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