| Year |
Citation |
Score |
| 2022 |
Olson ND, Wagner J, McDaniel J, Stephens SH, Westreich ST, Prasanna AG, Johanson E, Boja E, Maier EJ, Serang O, Jáspez D, Lorenzo-Salazar JM, Muñoz-Barrera A, Rubio-Rodríguez LA, Flores C, ... ... Mohiyuddin M, et al. PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions. Cell Genomics. 2. PMID 35720974 DOI: 10.1016/j.xgen.2022.100129 |
0.322 |
|
| 2021 |
Fang LT, Zhu B, Zhao Y, Chen W, Yang Z, Kerrigan L, Langenbach K, de Mars M, Lu C, Idler K, Jacob H, Zheng Y, Ren L, Yu Y, Jaeger E, ... ... Mohiyuddin M, et al. Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing. Nature Biotechnology. 39: 1151-1160. PMID 34504347 DOI: 10.1038/s41587-021-00993-6 |
0.335 |
|
| 2020 |
Li J, Niu L, Greene N, Douglas V, Schartner C, Chu B, Kinshuk F, Mu J, Doupnik A, Broka A, Rao P, Mohiyuddin M, Krishna S. Ephesus: A curation workflow tool for the clinical interpretation of genomic variants. Journal of Clinical Oncology. 38. DOI: 10.1200/Jco.2020.38.15_Suppl.E14074 |
0.394 |
|
| 2019 |
Fuentes RR, Chebotarov D, Duitama J, Smith S, De la Hoz JF, Mohiyuddin M, Wing RA, McNally KL, Tatarinova T, Grigoriev A, Mauleon R, Alexandrov N. Structural variants in 3000 rice genomes. Genome Research. PMID 30992303 DOI: 10.1101/Gr.241240.118 |
0.39 |
|
| 2019 |
Sahraeian SME, Liu R, Lau B, Podesta K, Mohiyuddin M, Lam HYK. Deep convolutional neural networks for accurate somatic mutation detection. Nature Communications. 10: 1041. PMID 30833567 DOI: 10.1038/S41467-019-09027-X |
0.356 |
|
| 2019 |
Yao L, Mohiyuddin M, Lam H. Abstract LB-213: ecTMB: A robust method to estimate and classify tumor mutational burden Cancer Research. 79. DOI: 10.1158/1538-7445.Am2019-Lb-213 |
0.349 |
|
| 2017 |
Fang LT, Mohiyuddin M, Fu Y, Yao L, Asadi NB, Lam HY. Abstract 386: OnkoInsight: an end-to-end cancer informatics pipeline to generate insights from large sequencing datasets Cancer Research. 77: 386-386. DOI: 10.1158/1538-7445.Am2017-386 |
0.337 |
|
| 2016 |
Lau B, Mohiyuddin M, Mu JC, Fang LT, Bani Asadi N, Dallett C, Lam HY. LongISLND: In silico Sequencing of Lengthy and Noisy Datatypes. Bioinformatics (Oxford, England). PMID 27667791 DOI: 10.1093/Bioinformatics/Btw602 |
0.393 |
|
| 2016 |
Parikh H, Mohiyuddin M, Lam HY, Iyer H, Chen D, Pratt M, Bartha G, Spies N, Losert W, Zook JM, Salit M. svclassify: a method to establish benchmark structural variant calls. Bmc Genomics. 17: 64. PMID 26772178 DOI: 10.1186/S12864-016-2366-2 |
0.407 |
|
| 2015 |
Mu JC, Tootoonchi Afshar P, Mohiyuddin M, Chen X, Li J, Bani Asadi N, Gerstein MB, Wong WH, Lam HY. Leveraging long read sequencing from a single individual to provide a comprehensive resource for benchmarking variant calling methods. Scientific Reports. 5: 14493. PMID 26412485 DOI: 10.1038/Srep14493 |
0.435 |
|
| 2015 |
Fang LT, Afshar PT, Chhibber A, Mohiyuddin M, Fan Y, Mu JC, Gibeling G, Barr S, Asadi NB, Gerstein MB, Koboldt DC, Wang W, Wong WH, Lam HY. An ensemble approach to accurately detect somatic mutations using SomaticSeq. Genome Biology. 16: 197. PMID 26381235 DOI: 10.1186/S13059-015-0758-2 |
0.369 |
|
| 2015 |
Abyzov A, Li S, Kim DR, Mohiyuddin M, Stütz AM, Parrish NF, Mu XJ, Clark W, Chen K, Hurles M, Korbel JO, Lam HY, Lee C, Gerstein MB. Erratum: Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms. Nature Communications. 6: 8389. PMID 26346554 DOI: 10.1038/Ncomms9389 |
0.34 |
|
| 2015 |
Mohiyuddin M, Mu JC, Li J, Bani Asadi N, Gerstein MB, Abyzov A, Wong WH, Lam HY. MetaSV: an accurate and integrative structural-variant caller for next generation sequencing. Bioinformatics (Oxford, England). PMID 25861968 DOI: 10.1093/Bioinformatics/Btv204 |
0.411 |
|
| 2015 |
Mu JC, Mohiyuddin M, Li J, Bani Asadi N, Gerstein MB, Abyzov A, Wong WH, Lam HY. VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications. Bioinformatics (Oxford, England). 31: 1469-71. PMID 25524895 DOI: 10.1093/Bioinformatics/Btu828 |
0.471 |
|
| 2014 |
Mu JC, Mohiyuddin M, Li J, Asadi NB, Gerstein MB, Abyzov A, Wong WH, Lam HYK. VarSim: a simulation validation framework for alignment and variant calling in high-throughput genome sequencing F1000research. 5. DOI: 10.7490/F1000Research.1096369.1 |
0.414 |
|
| 2012 |
Mu JC, Jiang H, Kiani A, Mohiyuddin M, Bani Asadi N, Wong WH. Fast and accurate read alignment for resequencing. Bioinformatics (Oxford, England). 28: 2366-73. PMID 22811546 DOI: 10.1093/Bioinformatics/Bts450 |
0.429 |
|
| 2011 |
Wehner MF, Oliker L, Shalf J, Donofrio D, Drummond LA, Heikes R, Kamil S, Kono C, Miller N, Miura H, Mohiyuddin M, Randall D, Yang W. Hardware/software co‐design of global cloud system resolving models Journal of Advances in Modeling Earth Systems. 3. DOI: 10.1029/2011Ms000073 |
0.362 |
|
| 2009 |
Mohiyuddin M, Murphy M, Oliker L, Shalf J, Wawrzynek J, Williams S. A design methodology for domain-optimized power-efficient supercomputing Proceedings of the Conference On High Performance Computing Networking, Storage and Analysis, Sc '09. DOI: 10.1145/1654059.1654072 |
0.481 |
|
| 2009 |
Donofrio D, Oliker L, Shalf J, Wehner MF, Rowen C, Krueger J, Kamil S, Mohiyuddin M. Energy-efficient computing for extreme-scale science Computer. 42: 62-71. DOI: 10.1109/Mc.2009.353 |
0.356 |
|
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