Ripan Singh Malhi, Ph.D., Anthropology, University of California, Davis - Publications

Affiliations: 
Anthropology, Animal Biology, Institute for Genomic Biology, University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Area:
Native American mtDNA genome and ancient DNA diversity, Population Structure among Native North Americans, Stickleback Phylogeography, Rhesus macaque Evolutionary History
Website:
https://netfiles.uiuc.edu/malhi/www/MalhiLab/people.html

52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Ní Leathlobhair M, Perri AR, Irving-Pease EK, Witt KE, Linderholm A, Haile J, Lebrasseur O, Ameen C, Blick J, Boyko AR, Brace S, Cortes YN, Crockford SJ, Devault A, Dimopoulos EA, ... ... Malhi RS, et al. The evolutionary history of dogs in the Americas. Science (New York, N.Y.). 361: 81-85. PMID 29976825 DOI: 10.1126/Science.Aao4776  0.4
2016 Hughes CE, Rogers MP, Owings AC, Petzelt B, Mitchell J, Harry H, Williams T, Goldberg D, Labuda D, Smith DG, Cybulski JS, Malhi RS. Genetic Structure of First Nation Communities in the Pacific Northwest. Human Biology. 88: 251-263. PMID 28826319 DOI: 10.13110/Humanbiology.88.4.0251  0.4
2016 Jenkins WD, Lipka AE, Fogleman AJ, Delfino KR, Malhi RS, Hendricks B. Variance in disease risk: rural populations and genetic diversity. Genome / National Research Council Canada = Genome / Conseil National De Recherches Canada. 1-7. PMID 27334395 DOI: 10.1139/Gen-2016-0077  0.4
2015 Sans M, Figueiro G, Hughes CE, Lindo J, Hidalgo PC, Malhi RS. A South American Prehistoric Mitogenome: Context, Continuity, and the Origin of Haplogroup C1d. Plos One. 10: e0141808. PMID 26509686 DOI: 10.1371/Journal.Pone.0141808  0.4
2015 Dong Y, Li C, Luan F, Li Z, Li H, Cui Y, Zhou H, Malhi RS. Low Mitochondrial DNA Diversity in an Ancient Population from China: Insight into Social Organization at the Fujia Site. Human Biology. 87: 71-84. PMID 26416323 DOI: 10.13110/Humanbiology.87.1.0071  0.4
2015 Rasmussen M, Sikora M, Albrechtsen A, Korneliussen TS, Moreno-Mayar JV, Poznik GD, Zollikofer CP, Ponce de León MS, Allentoft ME, Moltke I, Jónsson H, Valdiosera C, Malhi RS, Orlando L, Bustamante CD, et al. The ancestry and affiliations of Kennewick Man. Nature. PMID 26087396 DOI: 10.1038/Nature14625  0.4
2015 Kemp BM, Lindo J, Bolnick DA, Malhi RS, Chatters JC. Anthropology. Response to Comment on "Late Pleistocene human skeleton and mtDNA link Paleoamericans and modern Native Americans". Science (New York, N.Y.). 347: 835. PMID 25700511 DOI: 10.1126/Science.1261188  0.4
2015 Witt KE, Judd K, Kitchen A, Grier C, Kohler TA, Ortman SG, Kemp BM, Malhi RS. DNA analysis of ancient dogs of the Americas: identifying possible founding haplotypes and reconstructing population histories. Journal of Human Evolution. 79: 105-18. PMID 25532803 DOI: 10.1016/J.Jhevol.2014.10.012  0.4
2015 Kistler L, Ratan A, Godfrey LR, Crowley BE, Hughes CE, Lei R, Cui Y, Wood ML, Muldoon KM, Andriamialison H, McGraw JJ, Tomsho LP, Schuster SC, Miller W, Louis EE, ... ... Malhi RS, et al. Comparative and population mitogenomic analyses of Madagascar's extinct, giant 'subfossil' lemurs. Journal of Human Evolution. 79: 45-54. PMID 25523037 DOI: 10.1016/J.Jhevol.2014.06.016  0.4
2015 Mallott EK, Malhi RS, Garber PA. High-throughput sequencing of fecal DNA to identify insects consumed by wild Weddell's saddleback tamarins (Saguinus weddelli, Cebidae, Primates) in Bolivia. American Journal of Physical Anthropology. 156: 474-81. PMID 25369770 DOI: 10.1002/Ajpa.22654  0.4
2015 Eerkens JW, Carlson T, Malhi RS, Blake J, Bartelink EJ, Barfod GH, Estes A, Garibay R, Glessner J, Greenwald AM, Lentz K, Li H, Marshall CK. Isotopic and genetic analyses of a mass grave in central California: Implications for precontact hunter-gatherer warfare American Journal of Physical Anthropology. DOI: 10.1002/ajpa.22843  0.4
2014 Malhi RS, Kemp BM. Providing a venue for influential research in anthropological genomics. Introduction. Human Biology. 86: 5-6. PMID 25401982 DOI: 10.13110/Humanbiology.86.1.0005  0.4
2014 Shattuck MR, Satkoski-Trask J, Deinard A, Tito RY, Smith DG, Melnick DJ, Malhi RS. Patterns of genetic variation and the role of selection in HTR1A and HTR1B in macaques (Macaca). Bmc Genetics. 15: 116. PMID 25376878 DOI: 10.1186/S12863-014-0116-5  0.4
2014 Verdu P, Pemberton TJ, Laurent R, Kemp BM, Gonzalez-Oliver A, Gorodezky C, Hughes CE, Shattuck MR, Petzelt B, Mitchell J, Harry H, William T, Worl R, Cybulski JS, Rosenberg NA, ... Malhi RS, et al. Patterns of admixture and population structure in native populations of Northwest North America. Plos Genetics. 10: e1004530. PMID 25122539 DOI: 10.1371/Journal.Pgen.1004530  0.4
2014 Kennett DJ, Asmerom Y, Kemp BM, Polyak V, Bolnick DA, Malhi RS, Culleton BJ. Early Americans: misstated results. Science (New York, N.Y.). 345: 390. PMID 25061196 DOI: 10.1126/Science.345.6195.390-A  0.4
2014 Chatters JC, Kennett DJ, Asmerom Y, Kemp BM, Polyak V, Blank AN, Beddows PA, Reinhardt E, Arroyo-Cabrales J, Bolnick DA, Malhi RS, Culleton BJ, Erreguerena PL, Rissolo D, Morell-Hart S, et al. Late Pleistocene human skeleton and mtDNA link Paleoamericans and modern Native Americans. Science (New York, N.Y.). 344: 750-4. PMID 24833392 DOI: 10.1126/Science.1252619  0.4
2014 Rasmussen M, Anzick SL, Waters MR, Skoglund P, DeGiorgio M, Stafford TW, Rasmussen S, Moltke I, Albrechtsen A, Doyle SM, Poznik GD, Gudmundsdottir V, Yadav R, Malaspinas AS, White SS, ... ... Malhi RS, et al. The genome of a Late Pleistocene human from a Clovis burial site in western Montana. Nature. 506: 225-9. PMID 24522598 DOI: 10.1038/Nature13025  0.4
2014 Shattuck MR, Satkoski-Trask J, Deinard A, Tito RY, Smith DG, Malhi RS. The evolutionary history of SLC6A4 and the role of plasticity in Macaca. American Journal of Physical Anthropology. 153: 605-16. PMID 24375078 DOI: 10.1002/Ajpa.22460  0.4
2013 Achilli A, Perego UA, Lancioni H, Olivieri A, Gandini F, Hooshiar Kashani B, Battaglia V, Grugni V, Angerhofer N, Rogers MP, Herrera RJ, Woodward SR, Labuda D, Smith DG, Cybulski JS, ... ... Malhi RS, et al. Reconciling migration models to the Americas with the variation of North American native mitogenomes. Proceedings of the National Academy of Sciences of the United States of America. 110: 14308-13. PMID 23940335 DOI: 10.1073/Pnas.1306290110  0.4
2013 Cui Y, Lindo J, Hughes CE, Johnson JW, Hernandez AG, Kemp BM, Ma J, Cunningham R, Petzelt B, Mitchell J, Archer D, Cybulski JS, Malhi RS. Ancient DNA analysis of mid-holocene individuals from the Northwest Coast of North America reveals different evolutionary paths for mitogenomes. Plos One. 8: e66948. PMID 23843972 DOI: 10.1371/Journal.Pone.0066948  0.4
2012 Yan C, Shattuck MR, Thimmapuram J, Vullaganti D, Malhi R. Developing SNPs and STR DNA markers for snub-nosed monkeys (Rhinopithecus roxellana) using next-generation sequencing technology Conservation Genetics Resources. 4: 451-453. DOI: 10.1007/S12686-011-9572-7  0.4
2011 Trask JS, Garnica WT, Kanthaswamy S, Malhi RS, Smith DG. 4040 SNPs for genomic analysis in the rhesus macaque (Macaca mulatta). Genomics. 98: 352-8. PMID 21907785 DOI: 10.1016/J.Ygeno.2011.08.004  0.4
2011 Trask JS, Garnica WT, Malhi RS, Kanthaswamy S, Smith DG. High-throughput single-nucleotide polymorphism discovery and the search for candidate genes for long-term SIVmac nonprogression in Chinese rhesus macaques (Macaca mulatta). Journal of Medical Primatology. 40: 224-32. PMID 21781130 DOI: 10.1111/J.1600-0684.2011.00486.X  0.4
2011 Malhi RS, Trask JS, Shattuck M, Johnson J, Chakraborty D, Kanthaswamy S, Ramakrishnan U, Smith DG. Genotyping single nucleotide polymorphisms (SNPs) across species in Old World Monkeys. American Journal of Primatology. 73: 1031-40. PMID 21630301 DOI: 10.1002/Ajp.20969  0.4
2011 Trask JA, Malhi RS, Kanthaswamy S, Johnson J, Garnica WT, Malladi VS, Smith DG. The effect of SNP discovery method and sample size on estimation of population genetic data for Chinese and Indian rhesus macaques (Macaca mulatta). Primates; Journal of Primatology. 52: 129-38. PMID 21207104 DOI: 10.1007/S10329-010-0232-4  0.4
2011 Wilson BJ, Crockford SJ, Johnson JW, Malhi RS, Kemp BM. Genetic and archaeological evidence for a former breeding population of Aleutian cackling goose (Branta hutchinsii leucopareia) on Adak Island, central Aleutians, Alaska Canadian Journal of Zoology. 89: 732-743. DOI: 10.1139/Z11-027  0.4
2010 Kemp BM, González-Oliver A, Malhi RS, Monroe C, Schroeder KB, McDonough J, Rhett G, Resendéz A, Peñaloza-Espinosa RI, Buentello-Malo L, Gorodesky C, Smith DG. Evaluating the Farming/Language Dispersal Hypothesis with genetic variation exhibited by populations in the Southwest and Mesoamerica. Proceedings of the National Academy of Sciences of the United States of America. 107: 6759-64. PMID 20351276 DOI: 10.1073/Pnas.0905753107  0.4
2010 Malhi RS, Cybulski JS, Tito RY, Johnson J, Harry H, Dan C. Brief communication: mitochondrial haplotype C4c confirmed as a founding genome in the Americas. American Journal of Physical Anthropology. 141: 494-7. PMID 20027611 DOI: 10.1002/Ajpa.21238  0.4
2010 Luetkemeier ES, Sodhi M, Schook LB, Malhi RS. Multiple Asian pig origins revealed through genomic analyses. Molecular Phylogenetics and Evolution. 54: 680-6. PMID 19900568 DOI: 10.1016/J.Ympev.2009.11.004  0.4
2009 Malhi RS, Schroeder KB, Kemp BM. Uses and limitations of genetic data relating to Athapaskan migrations: a reply to Seymour. American Journal of Physical Anthropology. 140: 203-4. PMID 19591212 DOI: 10.1002/Ajpa.21130  0.4
2009 Schroeder KB, Jakobsson M, Crawford MH, Schurr TG, Boca SM, Conrad DF, Tito RY, Osipova LP, Tarskaia LA, Zhadanov SI, Wall JD, Pritchard JK, Malhi RS, Smith DG, Rosenberg NA. Haplotypic background of a private allele at high frequency in the Americas. Molecular Biology and Evolution. 26: 995-1016. PMID 19221006 DOI: 10.1093/Molbev/Msp024  0.4
2009 Luetkemeier ES, Malhi RS, Beever JE, Schook LB. Diversification of porcine MHC class II genes: evidence for selective advantage. Immunogenetics. 61: 119-29. PMID 19142631 DOI: 10.1007/S00251-008-0348-5  0.4
2008 Malhi RS, Gonzalez-Oliver A, Schroeder KB, Kemp BM, Greenberg JA, Dobrowski SZ, Smith DG, Resendez A, Karafet T, Hammer M, Zegura S, Brovko T. Distribution of Y chromosomes among native North Americans: a study of Athapaskan population history. American Journal of Physical Anthropology. 137: 412-24. PMID 18618732 DOI: 10.1002/Ajpa.20883  0.4
2008 Satkoski JA, Malhi RS, Kanthaswamy S, Tito RY, Malladi VS, Smith DG. Pyrosequencing as a method for SNP identification in the rhesus macaque (Macaca mulatta) Bmc Genomics. 9. PMID 18510772 DOI: 10.1186/1471-2164-9-256  0.4
2007 Tamm E, Kivisild T, Reidla M, Metspalu M, Smith DG, Mulligan CJ, Bravi CM, Rickards O, Martinez-Labarga C, Khusnutdinova EK, Fedorova SA, Golubenko MV, Stepanov VA, Gubina MA, Zhadanov SI, ... ... Malhi RS, et al. Beringian standstill and spread of Native American founders. Plos One. 2: e829. PMID 17786201 DOI: 10.1371/Journal.Pone.0000829  0.4
2007 Malhi RS, Sickler B, Lin D, Satkoski J, Tito RY, George D, Kanthaswamy S, Smith DG. MamuSNP: a resource for Rhesus Macaque (Macaca mulatta) genomics. Plos One. 2: e438. PMID 17487284 DOI: 10.1371/Journal.Pone.0000438  0.4
2007 Kemp BM, Malhi RS, McDonough J, Bolnick DA, Eshleman JA, Rickards O, Martinez-Labarga C, Johnson JR, Lorenz JG, Dixon EJ, Fifield TE, Heaton TH, Worl R, Smith DG. Genetic analysis of early holocene skeletal remains from Alaska and its implications for the settlement of the Americas. American Journal of Physical Anthropology. 132: 605-21. PMID 17243155 DOI: 10.1002/Ajpa.20543  0.4
2007 Malhi RS, Kemp BM, Eshleman JA, Cybulski J, Smith DG, Cousins S, Harry H. Mitochondrial haplogroup M discovered in prehistoric North Americans Journal of Archaeological Science. 34: 642-648. DOI: 10.1016/J.Jas.2006.07.004  0.4
2007 Malhi RS, Kemp BM, Eshleman JA, Cybulski J, Smith DG, Cousins S, Harry H. Mitochondrial haplogroup M discovered in prehistoric North Americans Journal of Archaeological Science. 34: 642-648. DOI: 10.1016/j.jas.2006.07.004  0.4
2006 Malhi RS, Rhett G, Bell AM. Mitochondrial DNA evidence of an early Holocene population expansion of threespine sticklebacks from Scotland. Molecular Phylogenetics and Evolution. 40: 148-54. PMID 16617024 DOI: 10.1016/J.Ympev.2006.02.019  0.4
2006 Schroeder KB, Malhi RS, Smith DG. Opinion: Demystifying native American genetic opposition to research Evolutionary Anthropology. 15: 88-92. DOI: 10.1002/Evan.20100  0.4
2006 Schroeder KB, Malhi RS, Smith DG. Opinion: Demystifying native American genetic opposition to research Evolutionary Anthropology. 15: 88-92. DOI: 10.1002/evan.20100  0.4
2004 Eshleman JA, Malhi RS, Johnson JR, Kaestle FA, Lorenz J, Smith DG. Mitochondrial DNA and prehistoric settlements: native migrations on the western edge of North America. Human Biology. 76: 55-75. PMID 15222680 DOI: 10.1353/Hub.2004.0019  0.4
2004 Malhi RS, Breece KE, Shook BA, Kaestle FA, Chatters JC, Hackenberger S, Smith DG. Patterns of mtDNA diversity in northwestern North America. Human Biology. 76: 33-54. PMID 15222679 DOI: 10.1353/Hub.2004.0023  0.4
2003 Malhi RS, Mortensen HM, Eshleman JA, Kemp BM, Lorenz JG, Kaestle FA, Johnson JR, Gorodezky C, Smith DG. Native American mtDNA prehistory in the American Southwest. American Journal of Physical Anthropology. 120: 108-24. PMID 12541329 DOI: 10.1002/Ajpa.10138  0.4
2003 Eshleman JA, Malhi RS, Smith DG. Mitochondrial DNA Studies of Native Americans: Conceptions and Misconceptions of the Population Prehistory of the Americas Evolutionary Anthropology. 12: 7-18. DOI: 10.1002/Evan.10048  0.4
2003 Eshleman JA, Malhi RS, Smith DG. Mitochondrial DNA Studies of Native Americans: Conceptions and Misconceptions of the Population Prehistory of the Americas Evolutionary Anthropology. 12: 7-18. DOI: 10.1002/evan.10048  0.4
2002 Malhi RS, Smith DG. Brief communication: Haplogroup X confirmed in prehistoric North America. American Journal of Physical Anthropology. 119: 84-6. PMID 12209576 DOI: 10.1002/Ajpa.10106  0.4
2002 Malhi RS, Eshleman JA, Greenberg JA, Weiss DA, Schultz Shook BA, Kaestle FA, Lorenz JG, Kemp BM, Johnson JR, Smith DG. The structure of diversity within New World mitochondrial DNA haplogroups: implications for the prehistory of North America. American Journal of Human Genetics. 70: 905-19. PMID 11845406 DOI: 10.1086/339690  0.4
2001 Malhi RS, Schultz BA, Smith DG. Distribution of mitochondrial DNA lineages among Native American tribes of Northeastern North America. Human Biology. 73: 17-55. PMID 11332644 DOI: 10.1353/Hub.2001.0008  0.4
2000 Smith DG, Lorenz J, Rolfs BK, Bettinger RL, Green B, Eshleman J, Schultz B, Malhi R. Implications of the distribution of Albumin Naskapi and Albumin Mexico for new world prehistory American Journal of Physical Anthropology. 111: 557-572. PMID 10727973 DOI: 10.1002/(Sici)1096-8644(200004)111:4<557::Aid-Ajpa10>3.0.Co;2-B  0.4
1999 Smith DG, Malhi RS, Eshleman J, Lorenz JG, Kaestle FA. Distribution of mtDNA haplogroup X among Native North Americans. American Journal of Physical Anthropology. 110: 271-84. PMID 10516561 DOI: 10.1002/(Sici)1096-8644(199911)110:3<271::Aid-Ajpa2>3.0.Co;2-C  0.4
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