| Year |
Citation |
Score |
| 2019 |
Khan A, Davlieva M, Panesso D, Rincon S, Miller WR, Diaz L, Reyes J, Cruz MR, Pemberton O, Nguyen AH, Siegel SD, Planet PJ, Narechania A, Latorre M, Rios R, ... ... Shamoo Y, et al. Antimicrobial sensing coupled with cell membrane remodeling mediates antibiotic resistance and virulence in . Proceedings of the National Academy of Sciences of the United States of America. PMID 31818937 DOI: 10.1073/Pnas.1916037116 |
0.317 |
|
| 2019 |
Prater AG, Mehta HH, Kosgei AJ, Miller WR, Tran TT, Arias CA, Shamoo Y. Environment Shapes the Accessible Daptomycin Resistance Mechanisms in . Antimicrobial Agents and Chemotherapy. PMID 31332078 DOI: 10.1128/Aac.00790-19 |
0.365 |
|
| 2019 |
Mehta HH, Prater AG, Beabout K, Elworth RAL, Karavis M, Gibbons HS, Shamoo Y. The essential role of hypermutation in rapid adaptation to antibiotic stress. Antimicrobial Agents and Chemotherapy. PMID 31036684 DOI: 10.1128/Aac.00744-19 |
0.335 |
|
| 2019 |
Rincon S, Panesso D, Miller WR, Singh KV, Cruz MR, Khan A, Dinh AQ, Diaz L, Rios R, Shamoo Y, Reyes J, Tran TT, Garsin DA, Arias CA. Disrupting Membrane Adaptation Restores In Vivo Efficacy of Antibiotics Against Multidrug-Resistant Enterococci and Potentiates Killing by Human Neutrophils. The Journal of Infectious Diseases. PMID 30938438 DOI: 10.1093/Infdis/Jiz131 |
0.309 |
|
| 2019 |
Khan A, Nguyen A, Panesso D, Vitrac H, Miller WR, Tran TT, Shamoo Y, Arthur M, Arias CA. 903. Resensitization to β-Lactams in Enterococci Depends on Penicillin-Binding Protein (PBP) Mislocalization and Is Mediated by a Single Protein That Modulates Cell Membrane (CM) Adaptation to Daptomycin (DAP) Open Forum Infectious Diseases. 6. DOI: 10.1093/Ofid/Ofz359.062 |
0.31 |
|
| 2018 |
Miller WR, Tran TT, Diaz L, Rios R, Khan A, Reyes J, Prater AG, Panesso D, Shamoo Y, Arias CA. LiaR-Independent Pathways to Daptomycin Resistance in Enterococcus faecalis Reveal A Multilayer Defense Against Cell Envelope Antibiotics. Molecular Microbiology. PMID 30582877 DOI: 10.1111/Mmi.14193 |
0.334 |
|
| 2018 |
Davlieva M, Wu C, Zhou Y, Arias C, Shamoo Y. Two mutations commonly associated with daptomycin resistance in Enterococcus faecium LiaS and LiaR appear to function epistatically in LiaFSR signaling. Biochemistry. PMID 30403130 DOI: 10.1021/Acs.Biochem.8B01072 |
0.331 |
|
| 2018 |
Mehta H, Weng J, Prater A, Elworth RAL, Han X, Shamoo Y. Pathogenic and evolve to resist trimethoprim-sulfamethoxazole by both expected and unexpected pathways. Antimicrobial Agents and Chemotherapy. PMID 29686152 DOI: 10.1128/Aac.00364-18 |
0.366 |
|
| 2017 |
Perez AM, Gomez MM, Kalvapalle P, O'Brien-Gilbert E, Bennett MR, Shamoo Y. Using cellular fitness to map the structure and function of a major facilitator superfamily effluxer. Molecular Systems Biology. 13: 964. PMID 29273640 DOI: 10.15252/Msb.20177635 |
0.389 |
|
| 2017 |
Nicolaou KC, Pulukuri KK, Rigol S, Buchman M, Shah AA, Cen N, McCurry MD, Beabout K, Shamoo Y. Enantioselective Total Synthesis of Antibiotic CJ-16,264, Synthesis and Biological Evaluation of Designed Analogues, and Discovery of Highly Potent and Simpler Antibacterial Agents. Journal of the American Chemical Society. PMID 29064688 DOI: 10.1021/Jacs.7B08749 |
0.301 |
|
| 2017 |
Beabout K, McCurry MD, Mehta H, Shah AA, Pulukuri KK, Rigol S, Wang Y, Nicolaou KC, Shamoo Y. Experimental evolution of diverse strains as a method for the determination of biochemical mechanisms of action for novel pyrrolizidinone antibiotics. Acs Infectious Diseases. PMID 28942642 DOI: 10.1021/Acsinfecdis.7B00135 |
0.327 |
|
| 2017 |
Mehta HH, Prater AG, Shamoo Y. Using experimental evolution to identify druggable targets that could inhibit the evolution of antimicrobial resistance. The Journal of Antibiotics. PMID 28928474 DOI: 10.1038/Ja.2017.108 |
0.335 |
|
| 2017 |
Wang X, Davlieva M, Reyes J, Panesso D, Arias CA, Shamoo Y. A Novel Phosphodiesterase of the GdpP Family Modulates Cyclic di-AMP Levels in Response to Cell Membrane Stress in Daptomycin-Resistant Enterococci. Antimicrobial Agents and Chemotherapy. PMID 28069645 DOI: 10.1128/Aac.01422-16 |
0.31 |
|
| 2017 |
Khan A, Davlieva M, Panesso D, Rincon S, Tran T, Wang X, Singh K, Miller W, Shamoo Y, Arias C. A Novel Mechanism of Resistance Against Antimicrobial Peptides Involves Extracellular Sensing Coupled with Membrane Remodeling Mediated by a Single Protein Open Forum Infectious Diseases. 4. DOI: 10.1093/Ofid/Ofx163.194 |
0.303 |
|
| 2016 |
Montealegre MC, Roh JH, Rae M, Davlieva MG, Singh KV, Shamoo Y, Murray BE. Differential Penicillin-Binding Protein 5 (PBP5) Levels in the Enterococcus faecium Clades with Different Levels of Ampicillin Resistance. Antimicrobial Agents and Chemotherapy. PMID 27821450 DOI: 10.1128/Aac.02034-16 |
0.325 |
|
| 2016 |
Davlieva M, Tovar-Yanez A, DeBruler K, Leonard PG, Zianni MR, Arias CA, Shamoo Y. An Adaptive mutation in Enterococcus faecium LiaR Associated with Antimicrobial Peptide Resistance Mimics Phosphorylation and Stabilizes LiaR in an Activated State. Journal of Molecular Biology. PMID 27670715 DOI: 10.1016/J.Jmb.2016.09.016 |
0.399 |
|
| 2016 |
Tran TT, Miller WR, Shamoo Y, Arias CA. Targeting cell membrane adaptation as a novel antimicrobial strategy. Current Opinion in Microbiology. 33: 91-96. PMID 27458841 DOI: 10.1016/J.Mib.2016.07.002 |
0.312 |
|
| 2015 |
Hammerstrom TG, Beabout K, Clements TP, Saxer G, Shamoo Y. Acinetobacter baumannii Repeatedly Evolves a Hypermutator Phenotype in Response to Tigecycline That Effectively Surveys Evolutionary Trajectories to Resistance. Plos One. 10: e0140489. PMID 26488727 DOI: 10.1371/Journal.Pone.0140489 |
0.344 |
|
| 2015 |
Panesso D, Reyes J, Gaston E, Deal M, Londoño A, Nigo M, Munita JM, Miller W, Shamoo Y, Tran TT, Arias CA. Deletion of liaR Reverses Daptomycin Resistance in Enterococcus faecium Independent of the Genetic Background. Antimicrobial Agents and Chemotherapy. PMID 26369959 DOI: 10.1128/Aac.01073-15 |
0.306 |
|
| 2015 |
Beabout K, Hammerstrom TG, Perez AM, Magalhães BF, Prater AG, Clements TP, Arias CA, Saxer G, Shamoo Y. The ribosomal S10 protein is a general target for decreased tigecycline susceptibility. Antimicrobial Agents and Chemotherapy. 59: 5561-6. PMID 26124155 DOI: 10.1128/Aac.00547-15 |
0.35 |
|
| 2015 |
Beabout K, Hammerstrom TG, Wang TT, Bhatty M, Christie PJ, Saxer G, Shamoo Y. Rampant Parasexuality Evolves in a Hospital Pathogen during Antibiotic Selection. Molecular Biology and Evolution. 32: 2585-97. PMID 26060280 DOI: 10.1093/Molbev/Msv133 |
0.347 |
|
| 2015 |
Davlieva M, Shi Y, Leonard PG, Johnson TA, Zianni MR, Arias CA, Ladbury JE, Shamoo Y. A variable DNA recognition site organization establishes the LiaR-mediated cell envelope stress response of enterococci to daptomycin. Nucleic Acids Research. 43: 4758-73. PMID 25897118 DOI: 10.1093/Nar/Gkv321 |
0.405 |
|
| 2015 |
Reyes J, Panesso D, Tran TT, Mishra NN, Cruz MR, Munita JM, Singh KV, Yeaman MR, Murray BE, Shamoo Y, Garsin D, Bayer AS, Arias CA. A liaR deletion restores susceptibility to daptomycin and antimicrobial peptides in multidrug-resistant Enterococcus faecalis. The Journal of Infectious Diseases. 211: 1317-25. PMID 25362197 DOI: 10.1093/Infdis/Jiu602 |
0.301 |
|
| 2014 |
Saxer G, Krepps MD, Merkley ED, Ansong C, Deatherage Kaiser BL, Valovska MT, Ristic N, Yeh PT, Prakash VP, Leiser OP, Nakhleh L, Gibbons HS, Kreuzer HW, Shamoo Y. Mutations in global regulators lead to metabolic selection during adaptation to complex environments. Plos Genetics. 10: e1004872. PMID 25501822 DOI: 10.1371/Journal.Pgen.1004872 |
0.32 |
|
| 2014 |
Nicolaou KC, Hale CR, Nilewski C, Ioannidou HA, ElMarrouni A, Nilewski LG, Beabout K, Wang TT, Shamoo Y. Total synthesis of viridicatumtoxin B and analogues thereof: strategy evolution, structural revision, and biological evaluation. Journal of the American Chemical Society. 136: 12137-60. PMID 25317739 DOI: 10.1021/Ja506472U |
0.315 |
|
| 2014 |
Davlieva M, Donarski J, Wang J, Shamoo Y, Nikonowicz EP. Structure analysis of free and bound states of an RNA aptamer against ribosomal protein S8 from Bacillus anthracis. Nucleic Acids Research. 42: 10795-808. PMID 25140011 DOI: 10.1093/Nar/Gku743 |
0.328 |
|
| 2014 |
Diaz L, Tran TT, Munita JM, Miller WR, Rincon S, Carvajal LP, Wollam A, Reyes J, Panesso D, Rojas NL, Shamoo Y, Murray BE, Weinstock GM, Arias CA. Whole-genome analyses of Enterococcus faecium isolates with diverse daptomycin MICs. Antimicrobial Agents and Chemotherapy. 58: 4527-34. PMID 24867964 DOI: 10.1128/Aac.02686-14 |
0.351 |
|
| 2013 |
Miller C, Kong J, Tran TT, Arias CA, Saxer G, Shamoo Y. Adaptation of Enterococcus faecalis to daptomycin reveals an ordered progression to resistance. Antimicrobial Agents and Chemotherapy. 57: 5373-83. PMID 23959318 DOI: 10.1128/Aac.01473-13 |
0.346 |
|
| 2013 |
Tran TT, Panesso D, Mishra NN, Mileykovskaya E, Guan Z, Munita JM, Reyes J, Diaz L, Weinstock GM, Murray BE, Shamoo Y, Dowhan W, Bayer AS, Arias CA. Daptomycin-resistant Enterococcus faecalis diverts the antibiotic molecule from the division septum and remodels cell membrane phospholipids. Mbio. 4. PMID 23882013 DOI: 10.1128/Mbio.00281-13 |
0.332 |
|
| 2013 |
Davlieva M, Zhang W, Arias CA, Shamoo Y. Biochemical characterization of cardiolipin synthase mutations associated with daptomycin resistance in enterococci. Antimicrobial Agents and Chemotherapy. 57: 289-96. PMID 23114777 DOI: 10.1128/Aac.01743-12 |
0.344 |
|
| 2013 |
Tran TT, Panesso D, Gao H, Roh JH, Munita JM, Reyes J, Diaz L, Lobos EA, Shamoo Y, Mishra NN, Bayer AS, Murray BE, Weinstock GM, Arias CA. Whole-genome analysis of a daptomycin-susceptible enterococcus faecium strain and its daptomycin-resistant variant arising during therapy. Antimicrobial Agents and Chemotherapy. 57: 261-8. PMID 23114757 DOI: 10.1128/Aac.01454-12 |
0.356 |
|
| 2013 |
Davlieva M, Donarski J, Nikonowicz E, Shamoo Y, Wang J. Structure and function of TatD exonuclease in DNA repair. Nucleic Acids Research. DOI: 10.2210/Pdb2Lun/Pdb |
0.313 |
|
| 2013 |
Shamoo Y. Small Changes in Enzyme Function can Lead to Surprisingly Large In Vivo Effects during Evolution Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.032 |
0.41 |
|
| 2012 |
Walkiewicz K, Benitez Cardenas AS, Sun C, Bacorn C, Saxer G, Shamoo Y. Small changes in enzyme function can lead to surprisingly large fitness effects during adaptive evolution of antibiotic resistance. Proceedings of the National Academy of Sciences of the United States of America. 109: 21408-13. PMID 23236139 DOI: 10.1073/Pnas.1209335110 |
0.734 |
|
| 2012 |
Mishra NN, Bayer AS, Tran TT, Shamoo Y, Mileykovskaya E, Dowhan W, Guan Z, Arias CA. Daptomycin resistance in enterococci is associated with distinct alterations of cell membrane phospholipid content. Plos One. 7: e43958. PMID 22952824 DOI: 10.1371/Journal.Pone.0043958 |
0.311 |
|
| 2011 |
Walkiewicz K, Davlieva M, Wu G, Shamoo Y. Crystal structure of Bacteroides thetaiotaomicron TetX2: a tetracycline degrading monooxygenase at 2.8 Å resolution. Proteins. 79: 2335-40. PMID 21590745 DOI: 10.1002/Prot.23052 |
0.738 |
|
| 2010 |
Miller C, Davlieva M, Wilson C, White KI, Couñago R, Wu G, Myers JC, Wittung-Stafshede P, Shamoo Y. Experimental evolution of adenylate kinase reveals contrasting strategies toward protein thermostability. Biophysical Journal. 99: 887-96. PMID 20682267 DOI: 10.1016/J.Bpj.2010.04.076 |
0.682 |
|
| 2010 |
Peña MI, Davlieva M, Bennett MR, Olson JS, Shamoo Y. Evolutionary fates within a microbial population highlight an essential role for protein folding during natural selection. Molecular Systems Biology. 6: 387. PMID 20631681 DOI: 10.1038/Msb.2010.43 |
0.404 |
|
| 2010 |
Peña MI, Van Itallie E, Bennett MR, Shamoo Y. Evolution of a single gene highlights the complexity underlying molecular descriptions of fitness. Chaos (Woodbury, N.Y.). 20: 026107. PMID 20590336 DOI: 10.1063/1.3453623 |
0.376 |
|
| 2010 |
Davlieva M, Shamoo Y. Crystal structure of a trimeric archaeal adenylate kinase from the mesophile Methanococcus maripaludis with an unusually broad functional range and thermal stability. Proteins. 78: 357-64. PMID 19731371 DOI: 10.1002/Prot.22549 |
0.342 |
|
| 2009 |
Davlieva M, Shamoo Y. Structure and biochemical characterization of an adenylate kinase originating from the psychrophilic organism Marinibacillus marinus. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 65: 751-6. PMID 19652331 DOI: 10.1107/S1744309109024348 |
0.351 |
|
| 2009 |
Guelker M, Stagg L, Wittung-Stafshede P, Shamoo Y. Pseudosymmetry, high copy number and twinning complicate the structure determination of Desulfovibrio desulfuricans (ATCC 29577) flavodoxin. Acta Crystallographica. Section D, Biological Crystallography. 65: 523-34. PMID 19465766 DOI: 10.1107/S0907444909010075 |
0.581 |
|
| 2008 |
Couñago R, Wilson CJ, Peña MI, Wittung-Stafshede P, Shamoo Y. An adaptive mutation in adenylate kinase that increases organismal fitness is linked to stability-activity trade-offs. Protein Engineering, Design & Selection : Peds. 21: 19-27. PMID 18093993 DOI: 10.1093/Protein/Gzm072 |
0.38 |
|
| 2007 |
Woodward AW, Ratzel SE, Woodward EE, Shamoo Y, Bartel B. Mutation of E1-CONJUGATING ENZYME-RELATED1 decreases RELATED TO UBIQUITIN conjugation and alters auxin response and development. Plant Physiology. 144: 976-87. PMID 17449645 DOI: 10.1104/Pp.107.100404 |
0.343 |
|
| 2006 |
Maximciuc AA, Putkey JA, Shamoo Y, Mackenzie KR. Complex of calmodulin with a ryanodine receptor target reveals a novel, flexible binding mode. Structure (London, England : 1993). 14: 1547-56. PMID 17027503 DOI: 10.1016/J.Str.2006.08.011 |
0.324 |
|
| 2006 |
Morozova N, Allers J, Myers J, Shamoo Y. Protein--RNA interactions: exploring binding patterns with a three-dimensional superposition analysis of high resolution structures Bioinformatics. 22: 2746-2752. PMID 16966360 DOI: 10.1093/Bioinformatics/Btl470 |
0.329 |
|
| 2006 |
Sun S, Geng L, Shamoo Y. Structure and enzymatic properties of a chimeric bacteriophage RB69 DNA polymerase and single-stranded DNA binding protein with increased processivity. Proteins. 65: 231-8. PMID 16881051 DOI: 10.1002/Prot.21088 |
0.697 |
|
| 2006 |
Couñago R, Chen S, Shamoo Y. In vivo molecular evolution reveals biophysical origins of organismal fitness. Molecular Cell. 22: 441-9. PMID 16713575 DOI: 10.1016/J.Molcel.2006.04.012 |
0.681 |
|
| 2005 |
Couñago R, Shamoo Y. Gene replacement of adenylate kinase in the gram-positive thermophile Geobacillus stearothermophilus disrupts adenine nucleotide homeostasis and reduces cell viability. Extremophiles : Life Under Extreme Conditions. 9: 135-44. PMID 15647886 DOI: 10.1007/S00792-004-0428-X |
0.658 |
|
| 2004 |
Bruning JB, Shamoo Y. Structural and thermodynamic analysis of human PCNA with peptides derived from DNA polymerase-delta p66 subunit and flap endonuclease-1. Structure (London, England : 1993). 12: 2209-19. PMID 15576034 DOI: 10.1016/J.Str.2004.09.018 |
0.367 |
|
| 2004 |
Myers JC, Shamoo Y. Human UP1 as a model for understanding purine recognition in the family of proteins containing the RNA recognition motif (RRM). Journal of Molecular Biology. 342: 743-56. PMID 15342234 DOI: 10.1016/J.Jmb.2004.07.029 |
0.349 |
|
| 2003 |
Myers JC, Moore SA, Shamoo Y. Structure-based incorporation of 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine into the human telomeric repeat DNA as a probe for UP1 binding and destabilization of G-tetrad structures. The Journal of Biological Chemistry. 278: 42300-6. PMID 12904298 DOI: 10.1074/Jbc.M306147200 |
0.363 |
|
| 2003 |
Shamoo Y. Structural insights into BRCA2 function. Current Opinion in Structural Biology. 13: 206-11. PMID 12727514 DOI: 10.1016/S0959-440X(03)00033-2 |
0.346 |
|
| 2003 |
Sun S, Shamoo Y. Biochemical characterization of interactions between DNA polymerase and single-stranded DNA-binding protein in bacteriophage RB69. The Journal of Biological Chemistry. 278: 3876-81. PMID 12458197 DOI: 10.1074/Jbc.M210497200 |
0.676 |
|
| 2001 |
Allers J, Shamoo Y. Structure-based analysis of protein-RNA interactions using the program ENTANGLE. Journal of Molecular Biology. 311: 75-86. PMID 11469858 DOI: 10.1006/Jmbi.2001.4857 |
0.324 |
|
| 1999 |
Shamoo Y, Steitz TA. Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex. Cell. 99: 155-66. PMID 10535734 DOI: 10.1016/S0092-8674(00)81647-5 |
0.361 |
|
| 1998 |
Rice LM, Shamoo Y, Brünger AT. Phase Improvement by Multi-Start Simulated Annealing Refinement and Structure-Factor Averaging Journal of Applied Crystallography. 31: 798-805. DOI: 10.1107/S0021889898006645 |
0.353 |
|
| 1995 |
Shamoo Y, Friedman AM, Parsons MR, Konigsberg WH, Steitz TA. Crystal structure of a replication fork single-stranded DNA binding protein (T4 gp32) complexed to DNA. Nature. 376: 362-6. PMID 7630406 DOI: 10.1038/376362A0 |
0.38 |
|
| 1995 |
Shamoo Y, Abdul-manan N, Williams KR. Multiple RNA binding domains (RBDs) just don't add up Nucleic Acids Research. 23: 725-728. PMID 7535921 DOI: 10.1093/Nar/23.5.725 |
0.31 |
|
| 1994 |
Garrett DS, Lodi PJ, Shamoo Y, Williams KR, Clore GM, Gronenborn AM. Determination of the secondary structure and folding topology of an RNA binding domain of mammalian hnRNP A1 protein using three-dimensional heteronuclear magnetic resonance spectroscopy. Biochemistry. 33: 2852-8. PMID 8130198 DOI: 10.1021/Bi00176A015 |
0.303 |
|
| 1993 |
Shamoo Y, Tam A, Konigsberg WH, Williams KR. Translational repression by the bacteriophage T4 gene 32 protein involves specific recognition of an RNA pseudoknot structure. Journal of Molecular Biology. 232: 89-104. PMID 8331672 DOI: 10.1006/Jmbi.1993.1372 |
0.327 |
|
| 1989 |
Shamoo Y, Ghosaini LR, Keating KM, Williams KR, Sturtevant JM, Konigsberg WH. Site-specific mutagenesis of T4 gene 32: the role of tyrosine residues in protein-nucleic acid interactions. Biochemistry. 28: 7409-17. PMID 2684276 DOI: 10.1021/Bi00444A039 |
0.347 |
|
| 1988 |
Shamoo Y, Williams KR, Konigsberg WH. Photochemical crosslinking of bacteriophage T4 single-stranded DNA-binding protein (gp32) to oligo-p(dT)8: identification of phenylalanine-183 as the site of crosslinking. Proteins. 4: 1-6. PMID 3186689 DOI: 10.1002/Prot.340040103 |
0.356 |
|
| 1986 |
Coleman JE, Williams KR, King GC, Prigodich RV, Shamoo Y, Konigsberg WH. Protein chemistry-nuclear magnetic resonance approach to mapping functional domains in single-stranded DNA binding proteins. Journal of Cellular Biochemistry. 32: 305-26. PMID 3543031 DOI: 10.1002/Jcb.240320407 |
0.391 |
|
| 1986 |
Prigodich RV, Shamoo Y, Williams KR, Chase JW, Konigsberg WH, Coleman JE. 1H NMR (500 MHz) identification of aromatic residues of gene 32 protein involved in DNA binding by use of protein containing perdeuterated aromatic residues and by site-directed mutagenesis. Biochemistry. 25: 3666-72. PMID 3013293 DOI: 10.1021/Bi00360A029 |
0.379 |
|
| 1986 |
Shamoo Y, Adari H, Konigsberg WH, Williams KR, Chase JW. Cloning of T4 gene 32 and expression of the wild-type protein under lambda promoter PL regulation in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 83: 8844-8. PMID 2947239 DOI: 10.1073/Pnas.83.23.8844 |
0.302 |
|
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