| Year |
Citation |
Score |
| 2024 |
Kang TY, Bocci F, Nie Q, Onuchic JN, Levchenko A. Spatial-temporal order-disorder transition in angiogenic NOTCH signaling controls cell fate specification. Elife. 12. PMID 38376371 DOI: 10.7554/eLife.89262 |
0.364 |
|
| 2024 |
Obata T, Mizoguchi S, Greaney AM, Adams T, Yuan Y, Edelstein S, Leiby KL, Rivero R, Wang N, Kim H, Yang J, Schupp JC, Stitelman D, Tsuchiya T, Levchenko A, et al. Organ Boundary Circuits Regulate Sox9+ Alveolar Tuft Cells During Post-Pneumonectomy Lung Regeneration. Biorxiv : the Preprint Server For Biology. PMID 38260691 DOI: 10.1101/2024.01.07.574469 |
0.32 |
|
| 2023 |
Lee SH, Yousafzai MS, Mohler K, Yadav V, Amiri S, Szuszkiewicz J, Levchenko A, Rinehart J, Murrell M. SPAK-dependent co-transporter activity mediates capillary adhesion and pressure during glioblastoma migration in confined spaces. Molecular Biology of the Cell. mbcE23030103. PMID 37672340 DOI: 10.1091/mbc.E23-03-0103 |
0.646 |
|
| 2022 |
Lee SH, Hou JC, Hamidzadeh A, Yousafzai MS, Ajeti V, Chang H, Odde DJ, Murrell M, Levchenko A. A molecular clock controls periodically driven cell migration in confined spaces. Cell Systems. PMID 35679858 DOI: 10.1016/j.cels.2022.05.005 |
0.657 |
|
| 2022 |
Raredon MSB, Yang J, Garritano J, Wang M, Kushnir D, Schupp JC, Adams TS, Greaney AM, Leiby KL, Kaminski N, Kluger Y, Levchenko A, Niklason LE. Computation and visualization of cell-cell signaling topologies in single-cell systems data using Connectome. Scientific Reports. 12: 4187. PMID 35264704 DOI: 10.1038/s41598-022-07959-x |
0.333 |
|
| 2020 |
Keyes J, Ganesan A, Molinar-Inglis O, Hamidzadeh A, Zhang J, Ling M, Trejo J, Levchenko A, Zhang J. Signaling diversity enabled by Rap1-regulated plasma membrane ERK with distinct temporal dynamics. Elife. 9. PMID 32452765 DOI: 10.7554/Elife.57410 |
0.37 |
|
| 2020 |
Ozen M, Lipniacki T, Levchenko A, Emamian ES, Abdi A. Modeling and measurement of signaling outcomes affecting decision making in noisy intracellular networks using machine learning methods. Integrative Biology : Quantitative Biosciences From Nano to Macro. 12: 122-138. PMID 32424393 DOI: 10.1093/Intbio/Zyaa009 |
0.361 |
|
| 2020 |
Keyes J, Ganesan A, Molinar-Inglis O, Hamidzadeh A, Zhang J, Ling M, Trejo J, Levchenko A, Zhang J. Author response: Signaling diversity enabled by Rap1-regulated plasma membrane ERK with distinct temporal dynamics Elife. DOI: 10.7554/Elife.57410.Sa2 |
0.305 |
|
| 2020 |
Mukherjee R, Vanaja KG, Boyer JA, Qiu J, Chen X, Stanchina Ed, Chandarlapaty S, Levchenko A, Rosen N. Abstract 1090: Regulation of PTEN translation by PI3K signaling maintains pathway homeostasis Cancer Research. 80: 1090-1090. DOI: 10.1158/1538-7445.Am2020-1090 |
0.386 |
|
| 2019 |
Raredon MSB, Adams TS, Suhail Y, Schupp JC, Poli S, Neumark N, Leiby KL, Greaney AM, Yuan Y, Horien C, Linderman G, Engler AJ, Boffa DJ, Kluger Y, Rosas IO, ... Levchenko A, et al. Single-cell connectomic analysis of adult mammalian lungs. Science Advances. 5: eaaw3851. PMID 31840053 DOI: 10.1126/Sciadv.Aaw3851 |
0.356 |
|
| 2019 |
Kang TY, Bocci F, Jolly MK, Levine H, Onuchic JN, Levchenko A. Pericytes enable effective angiogenesis in the presence of proinflammatory signals. Proceedings of the National Academy of Sciences of the United States of America. PMID 31685607 DOI: 10.1073/Pnas.1913373116 |
0.357 |
|
| 2019 |
Suhail Y, Cain MP, Vanaja K, Kurywchak PA, Levchenko A, Kalluri R, Kshitiz. Systems Biology of Cancer Metastasis. Cell Systems. 9: 109-127. PMID 31465728 DOI: 10.1016/J.Cels.2019.07.003 |
0.32 |
|
| 2019 |
Park J, Kim DH, Shah SR, Kim HN, Kshitiz, Kim P, Quiñones-Hinojosa A, Levchenko A. Switch-like enhancement of epithelial-mesenchymal transition by YAP through feedback regulation of WT1 and Rho-family GTPases. Nature Communications. 10: 2797. PMID 31243273 DOI: 10.1038/S41467-019-10729-5 |
0.461 |
|
| 2019 |
Kshitiz, Ellison DD, Suhail Y, Afzal J, Woo L, Kilic O, Spees J, Levchenko A. Dynamic secretome of bone marrow-derived stromal cells reveals a cardioprotective biochemical cocktail. Proceedings of the National Academy of Sciences of the United States of America. PMID 31239339 DOI: 10.1073/Pnas.1902598116 |
0.423 |
|
| 2019 |
Kang TY, Ellison D, Lee SH, Ewald AJ, Levchenko A. 3D Analysis of Multi-cellular Responses to Chemoattractant Gradients. Journal of Visualized Experiments : Jove. PMID 31180367 DOI: 10.3791/59226 |
0.378 |
|
| 2019 |
Kilic O, Yoon A, Shah SR, Yong HM, Ruiz-Valls A, Chang H, Panettieri RA, Liggett SB, Quiñones-Hinojosa A, An SS, Levchenko A. A microphysiological model of the bronchial airways reveals the interplay of mechanical and biochemical signals in bronchospasm. Nature Biomedical Engineering. PMID 31150010 DOI: 10.1038/S41551-019-0366-7 |
0.327 |
|
| 2019 |
Scanlon VM, Kochugaeva M, Xavier-Ferrucio J, Lu Y, Kwon N, Laumas A, Cenci M, Lawrence K, Barden K, Holbrook C, Tri Van Ho A, Blau HM, Levchenko A, Krause DS. Developing Single Cell Live Imaging Strategies to Determine MEP Fate and Predict Potential Blood. 134: 1190-1190. DOI: 10.1182/Blood-2019-131204 |
0.425 |
|
| 2019 |
Kshitiz, Afzal J, Suhail Y, Chang H, Dang CV, Levchenko A. Abstract 4359: Oscillatory HIF-1α induction promotes proliferation of hypoxic cells through a lactate dependent quorum autophagy response Cancer Research. 79: 4359-4359. DOI: 10.1158/1538-7445.Am2019-4359 |
0.371 |
|
| 2018 |
Vanaja KG, Timp W, Feinberg AP, Levchenko A. A Loss of Epigenetic Control Can Promote Cell Death through Reversing the Balance of Pathways in a Signaling Network. Molecular Cell. PMID 30244832 DOI: 10.1016/J.Molcel.2018.08.025 |
0.423 |
|
| 2018 |
Kim DH, Ewald AJ, Park J, Kshitiz, Kwak M, Gray RS, Su CY, Seo J, An SS, Levchenko A. Biomechanical interplay between anisotropic re-organization of cells and the surrounding matrix underlies transition to invasive cancer spread. Scientific Reports. 8: 14210. PMID 30242256 DOI: 10.1038/S41598-018-32010-3 |
0.372 |
|
| 2018 |
Park J, Kim DH, Levchenko A. Topotaxis: A New Mechanism of Directed Cell Migration in Topographic ECM Gradients. Biophysical Journal. 114: 1257-1263. PMID 29590582 DOI: 10.1016/J.Bpj.2017.11.3813 |
0.453 |
|
| 2017 |
Shah SR, David JM, Tippens ND, Mohyeldin A, Martinez-Gutierrez JC, Ganaha S, Schiapparelli P, Hamilton DH, Palena C, Levchenko A, Quiñones-Hinojosa A. Brachyury-YAP Regulatory Axis Drives Stemness and Growth in Cancer. Cell Reports. 21: 495-507. PMID 29020634 DOI: 10.1016/J.Celrep.2017.09.057 |
0.356 |
|
| 2017 |
Park J, Holmes WR, Lee SH, Kim HN, Kim DH, Kwak MK, Wang CJ, Edelstein-Keshet L, Levchenko A. Mechanochemical feedback underlies coexistence of qualitatively distinct cell polarity patterns within diverse cell populations. Proceedings of the National Academy of Sciences of the United States of America. PMID 28655842 DOI: 10.1073/Pnas.1700054114 |
0.432 |
|
| 2017 |
Holmes WR, Park J, Levchenko A, Edelstein-Keshet L. A mathematical model coupling polarity signaling to cell adhesion explains diverse cell migration patterns. Plos Computational Biology. 13: e1005524. PMID 28472054 DOI: 10.1371/Journal.Pcbi.1005524 |
0.472 |
|
| 2017 |
Habibi I, Cheong R, Lipniacki T, Levchenko A, Emamian ES, Abdi A. Computation and measurement of cell decision making errors using single cell data. Plos Computational Biology. 13: e1005436. PMID 28379950 DOI: 10.1371/Journal.Pcbi.1005436 |
0.404 |
|
| 2016 |
Kilic O, Pamies D, Lavell E, Schiapparelli P, Feng Y, Hartung T, Bal-Price A, Hogberg HT, Quinones-Hinojosa A, Guerrero-Cazares H, Levchenko A. Brain-on-a-chip model enables analysis of human neuronal differentiation and chemotaxis. Lab On a Chip. PMID 27722368 DOI: 10.1039/C6Lc00946H |
0.34 |
|
| 2016 |
Conlon P, Gelin-Licht R, Ganesan A, Zhang J, Levchenko A. Single-cell dynamics and variability of MAPK activity in a yeast differentiation pathway. Proceedings of the National Academy of Sciences of the United States of America. PMID 27651485 DOI: 10.1073/Pnas.1610081113 |
0.457 |
|
| 2016 |
Foxman EF, Storer JA, Vanaja K, Levchenko A, Iwasaki A. Two interferon-independent double-stranded RNA-induced host defense strategies suppress the common cold virus at warm temperature. Proceedings of the National Academy of Sciences of the United States of America. PMID 27402752 DOI: 10.1073/Pnas.1601942113 |
0.32 |
|
| 2016 |
Shah SR, Tippens N, Park J, Mohyeldin A, Vela G, Martinez-Gutierrez JC, Margolis SS, Schmidt S, Levchenko A, Quinones-Hinojosa A. 217 YAP Is Ready to Rac and Rho: Elucidation of a Novel YAP-Driven Network That Potentiates Brain Cancer Cell Dispersal and Confers Poor Survival in Patients. Neurosurgery. 63: 185. PMID 27399496 DOI: 10.1227/01.Neu.0000489786.22041.2D |
0.367 |
|
| 2016 |
Smith CL, Kilic O, Schiapparelli P, Guerrero-Cazares H, Kim DH, Sedora-Roman NI, Gupta S, O'Donnell T, Chaichana KL, Rodriguez FJ, Abbadi S, Park J, Quiñones-Hinojosa A, Levchenko A. Migration Phenotype of Brain-Cancer Cells Predicts Patient Outcomes. Cell Reports. PMID 27292647 DOI: 10.1016/J.Celrep.2016.05.042 |
0.404 |
|
| 2016 |
Smith T, Fancher S, Levchenko A, Nemenman I, Mugler A. Role of spatial averaging in multicellular gradient sensing. Physical Biology. 13: 035004. PMID 27203129 DOI: 10.1088/1478-3975/13/3/035004 |
0.347 |
|
| 2016 |
Park J, Kim DH, Kim HN, Wang CJ, Kwak MK, Hur E, Suh KY, An SS, Levchenko A. Directed migration of cancer cells by the graded texture of the underlying matrix. Nature Materials. PMID 26974411 DOI: 10.1038/Nmat4586 |
0.447 |
|
| 2016 |
Noren DP, Chou WH, Lee SH, Qutub AA, Warmflash A, Wagner DS, Popel AS, Levchenko A. Endothelial cells decode VEGF-mediated Ca2+ signaling patterns to produce distinct functional responses. Science Signaling. 9: ra20. PMID 26905425 DOI: 10.1126/Scisignal.Aad3188 |
0.397 |
|
| 2016 |
Molitoris JM, Paliwal S, Sekar RB, Blake R, Park J, Trayanova NA, Tung L, Levchenko A. Precisely parameterized experimental and computational models of tissue organization. Integrative Biology : Quantitative Biosciences From Nano to Macro. PMID 26822672 DOI: 10.1039/C5Ib00270B |
0.353 |
|
| 2016 |
Ellison D, Mugler A, Brennan MD, Lee SH, Huebner RJ, Shamir ER, Woo LA, Kim J, Amar P, Nemenman I, Ewald AJ, Levchenko A. Cell-cell communication enhances the capacity of cell ensembles to sense shallow gradients during morphogenesis. Proceedings of the National Academy of Sciences of the United States of America. PMID 26792522 DOI: 10.1073/Pnas.1516503113 |
0.463 |
|
| 2016 |
Mugler A, Levchenko A, Nemenman I. Limits to the precision of gradient sensing with spatial communication and temporal integration. Proceedings of the National Academy of Sciences of the United States of America. PMID 26792517 DOI: 10.1073/Pnas.1509597112 |
0.307 |
|
| 2016 |
Fancher S, Levchenko A, Nemenman I, Mugler A. Fundamental Limits to the Precision of Multicellular Sensing Biophysical Journal. 110. DOI: 10.1016/J.Bpj.2015.11.1884 |
0.426 |
|
| 2016 |
Kshitiz, Afzal J, Chang H, Goyal R, Levchenko A. Mechanics of Microenvironment as Instructive Cues Guiding Stem Cell Behavior Stem Cell Reports. 2: 62-72. DOI: 10.1007/S40778-016-0033-9 |
0.457 |
|
| 2015 |
Yaniv Y, Ganesan A, Yang D, Ziman BD, Lyashkov AE, Levchenko A, Zhang J, Lakatta EG. Real-time relationship between PKA biochemical signal network dynamics and increased action potential firing rate in heart pacemaker cells: Yaniv. Kinetics of PKA activation in heart pacemaker cells. Journal of Molecular and Cellular Cardiology. PMID 26241846 DOI: 10.1016/J.Yjmcc.2015.07.024 |
0.335 |
|
| 2015 |
Lin B, Levchenko A. Spatial manipulation with microfluidics. Frontiers in Bioengineering and Biotechnology. 3: 39. PMID 25905100 DOI: 10.3389/Fbioe.2015.00039 |
0.323 |
|
| 2015 |
Lin B, Yin T, Wu YI, Inoue T, Levchenko A. Interplay between chemotaxis and contact inhibition of locomotion determines exploratory cell migration. Nature Communications. 6: 6619. PMID 25851023 DOI: 10.1038/Ncomms7619 |
0.473 |
|
| 2015 |
Kshitiz, Afzal J, Suhail Y, Ahn EH, Goyal R, Hubbi ME, Hussaini Q, Ellison DD, Goyal J, Nacev B, Kim DH, Lee JH, Frankel S, Gray K, Bankoti R, ... ... Levchenko A, et al. Control of the interface between heterotypic cell populations reveals the mechanism of intercellular transfer of signaling proteins. Integrative Biology : Quantitative Biosciences From Nano to Macro. 7: 364-72. PMID 25784457 DOI: 10.1039/C4Ib00209A |
0.402 |
|
| 2015 |
Smith CL, Chaichana KL, Lee YM, Lin B, Stanko KM, O'Donnell T, Gupta S, Shah SR, Wang J, Wijesekera O, Delannoy M, Levchenko A, Quiñones-Hinojosa A. Pre-exposure of human adipose mesenchymal stem cells to soluble factors enhances their homing to brain cancer. Stem Cells Translational Medicine. 4: 239-51. PMID 25646527 DOI: 10.5966/Sctm.2014-0149 |
0.338 |
|
| 2015 |
Zhu M, Feng Y, Dangelmajer S, Guerrero-Cázares H, Chaichana KL, Smith CL, Levchenko A, Lei T, Quiñones-Hinojosa A. Human cerebrospinal fluid regulates proliferation and migration of stem cells through insulin-like growth factor-1. Stem Cells and Development. 24: 160-71. PMID 25265906 DOI: 10.1089/Scd.2014.0076 |
0.371 |
|
| 2014 |
Feng Y, Zhu M, Dangelmajer S, Lee YM, Wijesekera O, Castellanos CX, Denduluri A, Chaichana KL, Li Q, Zhang H, Levchenko A, Guerrero-Cazares H, Quiñones-Hinojosa A. Hypoxia-cultured human adipose-derived mesenchymal stem cells are non-oncogenic and have enhanced viability, motility, and tropism to brain cancer. Cell Death & Disease. 5: e1567. PMID 25501828 DOI: 10.1038/Cddis.2014.521 |
0.363 |
|
| 2014 |
Luo W, Lin B, Wang Y, Zhong J, O'Meally R, Cole RN, Pandey A, Levchenko A, Semenza GL. PHD3-mediated prolyl hydroxylation of nonmuscle actin impairs polymerization and cell motility. Molecular Biology of the Cell. 25: 2788-96. PMID 25079693 DOI: 10.1091/Mbc.E14-02-0775 |
0.351 |
|
| 2014 |
Abbadi S, Rodarte JJ, Abutaleb A, Lavell E, Smith CL, Ruff W, Schiller J, Olivi A, Levchenko A, Guerrero-Cazares H, Quinones-Hinojosa A. Glucose-6-phosphatase is a key metabolic regulator of glioblastoma invasion. Molecular Cancer Research : McR. 12: 1547-59. PMID 25001192 DOI: 10.1158/1541-7786.Mcr-14-0106-T |
0.34 |
|
| 2014 |
Levchenko A, Nemenman I. Cellular noise and information transmission. Current Opinion in Biotechnology. 28: 156-64. PMID 24922112 DOI: 10.1016/J.Copbio.2014.05.002 |
0.388 |
|
| 2014 |
Li Q, Wijesekera O, Salas SJ, Wang JY, Zhu M, Aprhys C, Chaichana KL, Chesler DA, Zhang H, Smith CL, Guerrero-Cazares H, Levchenko A, Quinones-Hinojosa A. Mesenchymal stem cells from human fat engineered to secrete BMP4 are nononcogenic, suppress brain cancer, and prolong survival. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 20: 2375-87. PMID 24789034 DOI: 10.1158/1078-0432.Ccr-13-1415 |
0.317 |
|
| 2014 |
Kshitiz, Afzal J, Kim DH, Levchenko A. Concise review: Mechanotransduction via p190RhoGAP regulates a switch between cardiomyogenic and endothelial lineages in adult cardiac progenitors. Stem Cells (Dayton, Ohio). 32: 1999-2007. PMID 24710857 DOI: 10.1002/Stem.1700 |
0.399 |
|
| 2014 |
Ahn EH, Kim Y, Kshitiz, An SS, Afzal J, Lee S, Kwak M, Suh KY, Kim DH, Levchenko A. Spatial control of adult stem cell fate using nanotopographic cues. Biomaterials. 35: 2401-10. PMID 24388388 DOI: 10.1016/J.Biomaterials.2013.11.037 |
0.425 |
|
| 2014 |
Abbadi S, Rodarte JR, Abutaleb A, Lavell E, Smith CL, Ruff W, Schiller J, Olivi A, Levchenko A, Guerrero-Cazares H, Quinones-Hinojosa A. TM-01 * IDENTIFICATION OF GLUCOSE-6-PHOSPHATASE ALPHA AS A KEY METABOLIC REGULATOR FOR GLIOBLASTOMA CELL INVASION Neuro-Oncology. 16: v213-v213. DOI: 10.1093/Neuonc/Nou278.1 |
0.377 |
|
| 2014 |
Shah SR, Tippens ND, Park J, Mohyeldin A, Vela G, Levchenko A, Quinones-Hinojosa A. CS-31 * A NOVEL YAP-DRIVEN MIGRATION AND INVASION SIGNALING PATHWAY PREDICTS POOR OUTCOME IN GLIOBLASTOMA Neuro-Oncology. 16: v57-v58. DOI: 10.1093/Neuonc/Nou242.31 |
0.468 |
|
| 2014 |
Quinones-Hinojosa A, Shah SR, Park J, Levchenko A, Quinones-Hinojosa A. YAP IS A CRITICAL AND NOVEL REGULATOR OF MIGRATION AND INVASION AND PREDICTS POOR OUTCOME IN GLIOBLASTOMA Neuro-Oncology. 16: iii38-iii39. DOI: 10.1093/Neuonc/Nou208.59 |
0.47 |
|
| 2013 |
Chang H, Levchenko A. Adaptive molecular networks controlling chemotactic migration: dynamic inputs and selection of the network architecture. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20130117. PMID 24062588 DOI: 10.1098/Rstb.2013.0117 |
0.337 |
|
| 2013 |
Howard JD, Moriarty WF, Park J, Riedy K, Panova IP, Chung CH, Suh KY, Levchenko A, Alani RM. Notch signaling mediates melanoma-endothelial cell communication and melanoma cell migration. Pigment Cell & Melanoma Research. 26: 697-707. PMID 23773728 DOI: 10.1111/Pcmr.12131 |
0.415 |
|
| 2013 |
Suhail Y, Kshitiz, Lee J, Walker M, Kim DH, Brennan MD, Bader JS, Levchenko A. Modeling intercellular transfer of biomolecules through tunneling nanotubes. Bulletin of Mathematical Biology. 75: 1400-16. PMID 23417627 DOI: 10.1007/S11538-013-9819-4 |
0.353 |
|
| 2013 |
Hubbi ME, Kshitiz, Gilkes DM, Rey S, Wong CC, Luo W, Kim DH, Dang CV, Levchenko A, Semenza GL. A nontranscriptional role for HIF-1α as a direct inhibitor of DNA replication Science Signaling. 6. PMID 23405012 DOI: 10.1126/Scisignal.2003417 |
0.33 |
|
| 2013 |
Chaturvedi P, Gilkes DM, Wong CC, Luo W, Zhang H, Wei H, Takano N, Schito L, Levchenko A, Semenza GL. Hypoxia-inducible factor-dependent breast cancer-mesenchymal stem cell bidirectional signaling promotes metastasis. The Journal of Clinical Investigation. 123: 189-205. PMID 23318994 DOI: 10.1172/Jci64993 |
0.353 |
|
| 2013 |
Cromer Berman SM, Kshitiz, Wang CJ, Orukari I, Levchenko A, Bulte JW, Walczak P. Cell motility of neural stem cells is reduced after SPIO-labeling, which is mitigated after exocytosis. Magnetic Resonance in Medicine. 69: 255-62. PMID 22374813 DOI: 10.1002/Mrm.24216 |
0.41 |
|
| 2013 |
Chaturvedi P, Gilkes DM, Wong CCL, Kshitiz, Luo W, Zhang H, Wei H, Takano N, Schito L, Levchenko A, Semenza GL. Erratum: Hypoxia-inducible factor-dependent breast cancer-mesenchymal stem cell bidirectional signaling promotes metastasis (Journal of Clinical Investigation (2013) 123: 1 (189-205) DOI: 10.1172/JCI64993) Journal of Clinical Investigation. 123. DOI: 10.1172/Jci69244 |
0.343 |
|
| 2013 |
Abbadi S, Guerrero-Cazares H, Abutaleb A, Smith CL, Ruff W, Schiller J, Levchenko A, Quinones-Hinojosa A. Abstract 5422: Human GBM-derived brain tumor stem cells resist glycolysis inhibition through Glucose 6 phosphatase: a potential clinical implication in the treatment of recurrent brain tumors. Cancer Research. 73: 5422-5422. DOI: 10.1158/1538-7445.Am2013-5422 |
0.364 |
|
| 2013 |
Inoue T, Lin Y, Lin B, Phua SC, Jiao J, Levchenko A, Niewiadomski P, Rohatgi R, Nakamura H, Inoue T. Illuminating Passive Permeability Barrier of Primary Cilia using Novel Diffusion Trap Technique Biophysical Journal. 104: 31a-32a. DOI: 10.1016/J.Bpj.2012.11.212 |
0.328 |
|
| 2012 |
Lin B, Holmes WR, Wang CJ, Ueno T, Harwell A, Edelstein-Keshet L, Inoue T, Levchenko A. Synthetic spatially graded Rac activation drives cell polarization and movement. Proceedings of the National Academy of Sciences of the United States of America. 109: E3668-77. PMID 23185021 DOI: 10.1073/Pnas.1210295109 |
0.423 |
|
| 2012 |
Brennan MD, Cheong R, Levchenko A. Systems biology. How information theory handles cell signaling and uncertainty. Science (New York, N.Y.). 338: 334-5. PMID 23087235 DOI: 10.1126/Science.1227946 |
0.419 |
|
| 2012 |
Kshitiz, Park J, Kim P, Helen W, Engler AJ, Levchenko A, Kim DH. Control of stem cell fate and function by engineering physical microenvironments. Integrative Biology : Quantitative Biosciences From Nano to Macro. 4: 1008-18. PMID 23077731 DOI: 10.1039/C2Ib20080E |
0.442 |
|
| 2012 |
Gorelik M, Orukari I, Wang J, Galpoththawela S, Kim H, Levy M, Gilad AA, Bar-Shir A, Kerr DA, Levchenko A, Bulte JW, Walczak P. Use of MR cell tracking to evaluate targeting of glial precursor cells to inflammatory tissue by exploiting the very late antigen-4 docking receptor. Radiology. 265: 175-85. PMID 22923719 DOI: 10.1148/Radiol.12112212 |
0.381 |
|
| 2012 |
Kim DH, Kshitiz, Smith RR, Kim P, Ahn EH, Kim HN, Marbán E, Suh KY, Levchenko A. Nanopatterned cardiac cell patches promote stem cell niche formation and myocardial regeneration. Integrative Biology : Quantitative Biosciences From Nano to Macro. 4: 1019-33. PMID 22890784 DOI: 10.1039/C2Ib20067H |
0.398 |
|
| 2012 |
Rhee A, Cheong R, Levchenko A. The application of information theory to biochemical signaling systems. Physical Biology. 9: 045011. PMID 22872091 DOI: 10.1088/1478-3975/9/4/045011 |
0.368 |
|
| 2012 |
Gelin-Licht R, Paliwal S, Conlon P, Levchenko A, Gerst JE. Scp160-dependent mRNA trafficking mediates pheromone gradient sensing and chemotropism in yeast. Cell Reports. 1: 483-94. PMID 22832273 DOI: 10.1016/J.Celrep.2012.03.004 |
0.3 |
|
| 2012 |
Holmes WR, Lin B, Levchenko A, Edelstein-Keshet L. Modelling cell polarization driven by synthetic spatially graded Rac activation. Plos Computational Biology. 8: e1002366. PMID 22737059 DOI: 10.1371/Journal.Pcbi.1002366 |
0.435 |
|
| 2012 |
Kshitiz, Hubbi ME, Ahn EH, Downey J, Afzal J, Kim DH, Rey S, Chang C, Kundu A, Semenza GL, Abraham RM, Levchenko A. Matrix rigidity controls endothelial differentiation and morphogenesis of cardiac precursors. Science Signaling. 5: ra41. PMID 22669846 DOI: 10.1126/Scisignal.2003002 |
0.458 |
|
| 2012 |
Lin B, Levchenko A. Microfluidic technologies for studying synthetic circuits. Current Opinion in Chemical Biology. 16: 307-17. PMID 22609335 DOI: 10.1016/J.Cbpa.2012.04.012 |
0.327 |
|
| 2012 |
Garzon-Muvdi T, Schiapparelli P, ap Rhys C, Guerrero-Cazares H, Smith C, Kim DH, Kone L, Farber H, Lee DY, An SS, Levchenko A, Quiñones-Hinojosa A. Regulation of brain tumor dispersal by NKCC1 through a novel role in focal adhesion regulation. Plos Biology. 10: e1001320. PMID 22570591 DOI: 10.1371/Journal.Pbio.1001320 |
0.434 |
|
| 2012 |
Kim DH, Provenzano PP, Smith CL, Levchenko A. Matrix nanotopography as a regulator of cell function. The Journal of Cell Biology. 197: 351-60. PMID 22547406 DOI: 10.1083/Jcb.201108062 |
0.466 |
|
| 2012 |
Ganesan A, Levchenko A. Principles of model building: an experimentation-aided approach to development of models for signaling networks. Methods in Cell Biology. 110: 1-17. PMID 22482943 DOI: 10.1016/B978-0-12-388403-9.00001-1 |
0.357 |
|
| 2012 |
Bankoti R, Gupta K, Levchenko A, Stäger S. Marginal zone B cells regulate antigen-specific T cell responses during infection. Journal of Immunology (Baltimore, Md. : 1950). 188: 3961-71. PMID 22412197 DOI: 10.4049/Jimmunol.1102880 |
0.316 |
|
| 2012 |
Wang CJ, Bergmann A, Lin B, Kim K, Levchenko A. Diverse sensitivity thresholds in dynamic signaling responses by social amoebae. Science Signaling. 5: ra17. PMID 22375055 DOI: 10.1126/Scisignal.2002449 |
0.451 |
|
| 2012 |
Vanaja KG, Feinberg AP, Levchenko A. Stem cell differentiation as a renewal-reward process: predictions and validation in the colonic crypt. Advances in Experimental Medicine and Biology. 736: 199-209. PMID 22161330 DOI: 10.1007/978-1-4419-7210-1_11 |
0.36 |
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| 2012 |
Park J, Kim HN, Kim DH, Levchenko A, Suh KY. Quantitative analysis of the combined effect of substrate rigidity and topographic guidance on cell morphology. Ieee Transactions On Nanobioscience. 11: 28-36. PMID 21908261 DOI: 10.1109/Tnb.2011.2165728 |
0.402 |
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| 2012 |
Kshitiz, Hubbi ME, Ahn EH, Downey J, Afzal J, Kim DH, Rey S, Chang C, Kundu A, Semenza GL, Abraham RM, Levchenko A. Matrix rigidity controls endothelial differentiation and morphogenesis of cardiac precursors (Science Signaling (2012) 5) Science Signaling. 5. DOI: 10.1126/Scisignal.5245Er6 |
0.301 |
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| 2012 |
Kozono D, Nitta M, Sampetrean O, Kimberly N, Kushwaha D, Merzon D, Ligon K, Zhu S, Zhu K, Kim TH, Kwon C, Becher O, Saya H, Chen CC, Donovan LK, ... ... Levchenko A, et al. LAB-STEM CELLS Neuro-Oncology. 14: vi142-vi152. DOI: 10.1093/Neuonc/Nos239 |
0.345 |
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| 2012 |
Ganesan A, Levchenko A, Zhang J. ERK-Mediated Decoding of Calcium Oscillations in Pancreatic Beta Cells Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.2777 |
0.317 |
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| 2011 |
Cheong R, Rhee A, Wang CJ, Nemenman I, Levchenko A. Information transduction capacity of noisy biochemical signaling networks. Science (New York, N.Y.). 334: 354-8. PMID 21921160 DOI: 10.1126/Science.1204553 |
0.355 |
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| 2011 |
Kshitiz, Kim DH, Beebe DJ, Levchenko A. Micro- and nanoengineering for stem cell biology: the promise with a caution. Trends in Biotechnology. 29: 399-408. PMID 21549437 DOI: 10.1016/J.Tibtech.2011.03.006 |
0.396 |
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| 2011 |
Stine MJ, Wang CJ, Moriarty WF, Ryu B, Cheong R, Westra WH, Levchenko A, Alani RM. Integration of genotypic and phenotypic screening reveals molecular mediators of melanoma-stromal interaction. Cancer Research. 71: 2433-44. PMID 21324919 DOI: 10.1158/0008-5472.Can-10-1875 |
0.355 |
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| 2011 |
Ni Q, Ganesan A, Aye-Han NN, Gao X, Allen MD, Levchenko A, Zhang J. Signaling diversity of PKA achieved via a Ca2+-cAMP-PKA oscillatory circuit. Nature Chemical Biology. 7: 34-40. PMID 21102470 DOI: 10.1038/Nchembio.478 |
0.36 |
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| 2011 |
Levchenko A, VanHook AM. Science Signaling Podcast: 4 October 2011 Science Signaling. 4: pc20-pc20. DOI: 10.1126/Scisignal.2002543 |
0.33 |
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| 2011 |
Ganesan A, Ni Q, Aye-Han N, Gao X, Allen MD, Levchenko A, Zhang J. PKA is a Control Node in a Calcium-Dependent Oscillatory Circuit in Pancreatic Beta Cells Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.3023 |
0.337 |
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| 2010 |
Cheong R, Levchenko A. Oscillatory signaling processes: the how, the why and the where. Current Opinion in Genetics & Development. 20: 665-9. PMID 20971631 DOI: 10.1016/J.Gde.2010.08.007 |
0.357 |
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| 2010 |
Cheong R, Paliwal S, Levchenko A. Models at the single cell level. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 2: 34-48. PMID 20836009 DOI: 10.1002/Wsbm.49 |
0.42 |
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| 2010 |
Kim DH, Lee H, Lee YK, Nam JM, Levchenko A. Biomimetic nanopatterns as enabling tools for analysis and control of live cells. Advanced Materials (Deerfield Beach, Fla.). 22: 4551-66. PMID 20803528 DOI: 10.1002/Adma.201000468 |
0.421 |
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| 2010 |
Yin Z, Tao SC, Cheong R, Zhu H, Levchenko A. An integrated micro-electro-fluidic and protein arraying system for parallel analysis of cell responses to controlled microenvironments. Integrative Biology : Quantitative Biosciences From Nano to Macro. 2: 416-23. PMID 20714638 DOI: 10.1039/C0Ib00017E |
0.445 |
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| 2010 |
Melke P, Sahlin P, Levchenko A, Jönsson H. A cell-based model for quorum sensing in heterogeneous bacterial colonies. Plos Computational Biology. 6: e1000819. PMID 20585545 DOI: 10.1371/Journal.Pcbi.1000819 |
0.44 |
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| 2010 |
Gupta K, Kim DH, Ellison D, Smith C, Kundu A, Tuan J, Suh KY, Levchenko A. Lab-on-a-chip devices as an emerging platform for stem cell biology. Lab On a Chip. 10: 2019-31. PMID 20556297 DOI: 10.1039/C004689B |
0.424 |
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| 2010 |
Fan D, Yin Z, Cheong R, Zhu FQ, Cammarata RC, Chien CL, Levchenko A. Subcellular-resolution delivery of a cytokine through precisely manipulated nanowires. Nature Nanotechnology. 5: 545-51. PMID 20543835 DOI: 10.1038/Nnano.2010.104 |
0.421 |
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| 2010 |
Fosbrink M, Aye-Han NN, Cheong R, Levchenko A, Zhang J. Visualization of JNK activity dynamics with a genetically encoded fluorescent biosensor. Proceedings of the National Academy of Sciences of the United States of America. 107: 5459-64. PMID 20212108 DOI: 10.1073/Pnas.0909671107 |
0.381 |
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| 2010 |
Kim DH, Lipke EA, Kim P, Cheong R, Thompson S, Delannoy M, Suh KY, Tung L, Levchenko A. Nanoscale cues regulate the structure and function of macroscopic cardiac tissue constructs. Proceedings of the National Academy of Sciences of the United States of America. 107: 565-70. PMID 20018748 DOI: 10.1073/Pnas.0906504107 |
0.335 |
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| 2009 |
Kim DH, Seo CH, Han K, Kwon KW, Levchenko A, Suh KY. Guided Cell Migration on Microtextured Substrates with Variable Local Density and Anisotropy. Advanced Functional Materials. 19: 1579-1586. PMID 20046799 DOI: 10.1002/Adfm.200990041 |
0.391 |
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| 2009 |
Ellison D, Munden A, Levchenko A. Computational model and microfluidic platform for the investigation of paracrine and autocrine signaling in mouse embryonic stem cells. Molecular Biosystems. 5: 1004-12. PMID 19668866 DOI: 10.1039/B905602E |
0.443 |
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| 2009 |
Kim DH, Han K, Gupta K, Kwon KW, Suh KY, Levchenko A. Mechanosensitivity of fibroblast cell shape and movement to anisotropic substratum topography gradients. Biomaterials. 30: 5433-44. PMID 19595452 DOI: 10.1016/J.Biomaterials.2009.06.042 |
0.428 |
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| 2009 |
Cheong R, Wang CJ, Levchenko A. Using a microfluidic device for high-content analysis of cell signaling. Science Signaling. 2: pl2. PMID 19531802 DOI: 10.1126/Scisignal.275Pl2 |
0.361 |
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| 2009 |
Kim DH, Wong PK, Park J, Levchenko A, Sun Y. Microengineered platforms for cell mechanobiology. Annual Review of Biomedical Engineering. 11: 203-33. PMID 19400708 DOI: 10.1146/Annurev-Bioeng-061008-124915 |
0.435 |
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| 2009 |
Niu X, Gupta K, Yang JT, Shamblott MJ, Levchenko A. Physical transfer of membrane and cytoplasmic components as a general mechanism of cell-cell communication. Journal of Cell Science. 122: 600-10. PMID 19208767 DOI: 10.1242/Jcs.031427 |
0.408 |
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| 2009 |
Timp W, Levchenko A, Feinberg AP. A new link between epigenetic progenitor lesions in cancer and the dynamics of signal transduction. Cell Cycle (Georgetown, Tex.). 8: 383-90. PMID 19177016 DOI: 10.4161/Cc.8.3.7542 |
0.33 |
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| 2009 |
Cheong R, Wang CJ, Levchenko A. High content cell screening in a microfluidic device. Molecular & Cellular Proteomics : McP. 8: 433-42. PMID 18953019 DOI: 10.1074/Mcp.M800291-Mcp200 |
0.427 |
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| 2009 |
Levchenko A, VanHook AM. Science Signaling Podcast: 23 June 2009 Science Signaling. 2: pc11-pc11. DOI: 10.1126/Scisignal.276Pc11 |
0.378 |
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| 2008 |
Paliwal S, Wang CJ, Levchenko A. Pulsing cells: how fast is too fast? Hfsp Journal. 2: 251-6. PMID 19404435 DOI: 10.2976/1.2969901 |
0.4 |
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| 2008 |
Williams JW, Cui X, Levchenko A, Stevens AM. Robust and sensitive control of a quorum-sensing circuit by two interlocked feedback loops. Molecular Systems Biology. 4: 234. PMID 19096361 DOI: 10.1038/Msb.2008.70 |
0.334 |
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| 2008 |
Yin Z, Noren D, Wang CJ, Hang R, Levchenko A. Analysis of pairwise cell interactions using an integrated dielectrophoretic-microfluidic system. Molecular Systems Biology. 4: 232. PMID 19096359 DOI: 10.1038/Msb.2008.69 |
0.439 |
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| 2008 |
Hilioti Z, Sabbagh W, Paliwal S, Bergmann A, Goncalves MD, Bardwell L, Levchenko A. Oscillatory phosphorylation of yeast Fus3 MAP kinase controls periodic gene expression and morphogenesis. Current Biology : Cb. 18: 1700-6. PMID 18976914 DOI: 10.1016/J.Cub.2008.09.027 |
0.35 |
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| 2008 |
Cheong R, Hoffmann A, Levchenko A. Understanding NF-kappaB signaling via mathematical modeling. Molecular Systems Biology. 4: 192. PMID 18463616 DOI: 10.1038/Msb.2008.30 |
0.334 |
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| 2008 |
Cheong R, Levchenko A. Wires in the soup: quantitative models of cell signaling. Trends in Cell Biology. 18: 112-8. PMID 18291655 DOI: 10.1016/J.Tcb.2008.01.005 |
0.426 |
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| 2008 |
Joanne Wang C, Li X, Lin B, Shim S, Ming GL, Levchenko A. A microfluidics-based turning assay reveals complex growth cone responses to integrated gradients of substrate-bound ECM molecules and diffusible guidance cues. Lab On a Chip. 8: 227-37. PMID 18231660 DOI: 10.1039/B713945D |
0.335 |
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| 2007 |
Cho H, Jönsson H, Campbell K, Melke P, Williams JW, Jedynak B, Stevens AM, Groisman A, Levchenko A. Self-organization in high-density bacterial colonies: efficient crowd control. Plos Biology. 5: e302. PMID 18044986 DOI: 10.1371/Journal.Pbio.0050302 |
0.342 |
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| 2007 |
Socolovsky M, Murrell M, Liu Y, Pop R, Porpiglia E, Levchenko A. Negative autoregulation by FAS mediates robust fetal erythropoiesis. Plos Biology. 5: e252. PMID 17896863 DOI: 10.1371/Journal.Pbio.0050252 |
0.656 |
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| 2007 |
O'Dea EL, Barken D, Peralta RQ, Tran KT, Werner SL, Kearns JD, Levchenko A, Hoffmann A. A homeostatic model of IkappaB metabolism to control constitutive NF-kappaB activity. Molecular Systems Biology. 3: 111. PMID 17486138 DOI: 10.1038/Msb4100148 |
0.338 |
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| 2007 |
Paliwal S, Iglesias PA, Campbell K, Hilioti Z, Groisman A, Levchenko A. MAPK-mediated bimodal gene expression and adaptive gradient sensing in yeast. Nature. 446: 46-51. PMID 17310144 DOI: 10.1038/Nature05561 |
0.39 |
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| 2006 |
Zhang NN, Dudgeon DD, Paliwal S, Levchenko A, Grote E, Cunningham KW. Multiple signaling pathways regulate yeast cell death during the response to mating pheromones. Molecular Biology of the Cell. 17: 3409-22. PMID 16738305 DOI: 10.1091/Mbc.E06-03-0177 |
0.409 |
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| 2006 |
Koh X, Srinivasan B, Ching HS, Levchenko A. A 3D Monte Carlo analysis of the role of dyadic space geometry in spark generation. Biophysical Journal. 90: 1999-2014. PMID 16387773 DOI: 10.1529/Biophysj.105.065466 |
0.331 |
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| 2006 |
Cheong R, Bergmann A, Werner SL, Regal J, Hoffmann A, Levchenko A. Transient IkappaB kinase activity mediates temporal NF-kappaB dynamics in response to a wide range of tumor necrosis factor-alpha doses. The Journal of Biological Chemistry. 281: 2945-50. PMID 16321974 DOI: 10.1074/Jbc.M510085200 |
0.37 |
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| 2006 |
Levchenko A. Integrative micro- and nano-scale control of cell function Nanomedicine: Nanotechnology, Biology and Medicine. 2: 309. DOI: 10.1016/J.Nano.2006.10.127 |
0.319 |
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| 2005 |
Groisman A, Lobo C, Cho H, Campbell JK, Dufour YS, Stevens AM, Levchenko A. A microfluidic chemostat for experiments with bacterial and yeast cells. Nature Methods. 2: 685-9. PMID 16118639 DOI: 10.1038/Nmeth784 |
0.391 |
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| 2005 |
Levchenko A. Proteomics takes stem cell analyses to another level. Nature Biotechnology. 23: 828-30. PMID 16003369 DOI: 10.1038/Nbt0705-828 |
0.348 |
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| 2005 |
Barken D, Wang CJ, Kearns J, Cheong R, Hoffmann A, Levchenko A. Comment on "Oscillations in NF-kappaB signaling control the dynamics of gene expression". Science (New York, N.Y.). 308: 52; author reply 52. PMID 15802586 DOI: 10.1126/Science.1107904 |
0.351 |
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| 2005 |
Jönsson H, Levchenko A. An explicit spatial model of yeast microcolony growth Multiscale Modeling & Simulation. 3: 346-361. DOI: 10.1137/040603255 |
0.373 |
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| 2004 |
Murrell MP, Yarema KJ, Levchenko A. The systems biology of glycosylation. Chembiochem : a European Journal of Chemical Biology. 5: 1334-47. PMID 15457533 DOI: 10.1002/Cbic.200400143 |
0.689 |
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| 2004 |
Hilioti Z, Gallagher DA, Low-Nam ST, Ramaswamy P, Gajer P, Kingsbury TJ, Birchwood CJ, Levchenko A, Cunningham KW. GSK-3 kinases enhance calcineurin signaling by phosphorylation of RCNs. Genes & Development. 18: 35-47. PMID 14701880 DOI: 10.1101/Gad.1159204 |
0.355 |
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| 2004 |
Paliwal S, Ma L, Krishnan J, Levchenko A, Iglesias PA. Responding to directional cues: A tale of two cells Ieee Control Systems Magazine. 24: 77-90. DOI: 10.1109/Mcs.2004.1316655 |
0.334 |
|
| 2003 |
Levchenko A. Dynamical and integrative cell signaling: challenges for the new biology. Biotechnology and Bioengineering. 84: 773-82. PMID 14708118 DOI: 10.1002/Bit.10854 |
0.378 |
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| 2003 |
Shapiro BE, Levchenko A, Meyerowitz EM, Wold BJ, Mjolsness ED. Cellerator: extending a computer algebra system to include biochemical arrows for signal transduction simulations. Bioinformatics (Oxford, England). 19: 677-8. PMID 12651737 DOI: 10.1093/Bioinformatics/Btg042 |
0.306 |
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| 2002 |
Hoffmann A, Levchenko A, Scott ML, Baltimore D. The IkappaB-NF-kappaB signaling module: temporal control and selective gene activation. Science (New York, N.Y.). 298: 1241-5. PMID 12424381 DOI: 10.1126/Science.1071914 |
0.333 |
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| 2002 |
Iglesias PA, Levchenko A. Modeling the cell's guidance system. Science's Stke : Signal Transduction Knowledge Environment. 2002: re12. PMID 12209053 DOI: 10.1126/Stke.2002.148.Re12 |
0.431 |
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| 2002 |
Levchenko A, Iglesias PA. Models of eukaryotic gradient sensing: application to chemotaxis of amoebae and neutrophils. Biophysical Journal. 82: 50-63. PMID 11751295 DOI: 10.1016/S0006-3495(02)75373-3 |
0.401 |
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| 2001 |
Levchenko A. Computational cell biology in the post-genomic era Molecular Biology Reports. 28: 83-89. PMID 11931392 DOI: 10.1023/A:1017913813132 |
0.395 |
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| 2000 |
Levchenko A, Bruck J, Sternberg PW. Scaffold proteins may biphasically affect the levels of mitogen-activated protein kinase signaling and reduce its threshold properties. Proceedings of the National Academy of Sciences of the United States of America. 97: 5818-23. PMID 10823939 DOI: 10.1073/Pnas.97.11.5818 |
0.363 |
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