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Jillian F. Banfield - Publications

Affiliations: 
Earth and Planetary Science, Environmental Science University of California, Berkeley, Berkeley, CA, United States 
Area:
Mineralogy, environmental geochemistry, geomicrobiology, and nanogeoscience
Website:
http://eps.berkeley.edu/development/view_person.php?uid=185017&page=25
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322 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Valentin-Alvarado LE, Appler KE, De Anda V, Schoelmerich MC, West-Roberts J, Kivenson V, Crits-Christoph A, Ly L, Sachdeva R, Greening C, Savage DF, Baker BJ, Banfield JF. Asgard archaea modulate potential methanogenesis substrates in wetland soil. Nature Communications. 15: 6384. PMID 39085194 DOI: 10.1038/s41467-024-49872-z  0.579
2024 Schoelmerich MC, Ly L, West-Roberts J, Shi LD, Shen C, Malvankar NS, Taib N, Gribaldo S, Woodcroft BJ, Schadt CW, Al-Shayeb B, Dai X, Mozsary C, Hickey S, He C, ... ... Banfield JF, et al. Borg extrachromosomal elements of methane-oxidizing archaea have conserved and expressed genetic repertoires. Nature Communications. 15: 5414. PMID 38926353 DOI: 10.1038/s41467-024-49548-8  0.754
2024 Voutsinos MY, West-Roberts JA, Sachdeva R, Moreau JW, Banfield JF. Weathered granites and soils harbour microbes with lanthanide-dependent methylotrophic enzymes. Bmc Biology. 22: 41. PMID 38369453 DOI: 10.1186/s12915-024-01841-0  0.631
2024 Valentin-Alvarado LE, Fakra SC, Probst AJ, Giska JR, Jaffe AL, Oltrogge LM, West-Roberts J, Rowland J, Manga M, Savage DF, Greening C, Baker BJ, Banfield JF. Autotrophic biofilms sustained by deeply sourced groundwater host diverse bacteria implicated in sulfur and hydrogen metabolism. Microbiome. 12: 15. PMID 38273328 DOI: 10.1186/s40168-023-01704-w  0.589
2023 Lou YC, Rubin BE, Schoelmerich MC, DiMarco KS, Borges AL, Rovinsky R, Song L, Doudna JA, Banfield JF. Infant microbiome cultivation and metagenomic analysis reveal Bifidobacterium 2'-fucosyllactose utilization can be facilitated by coexisting species. Nature Communications. 14: 7417. PMID 37973815 DOI: 10.1038/s41467-023-43279-y  0.421
2023 Yoon PH, Skopintsev P, Shi H, Chen L, Adler BA, Al-Shimary M, Craig RJ, Loi KJ, DeTurk EC, Li Z, Amerasekera J, Trinidad M, Nisonoff H, Chen K, Lahiri A, ... ... Banfield JF, et al. Eukaryotic RNA-guided endonucleases evolved from a unique clade of bacterial enzymes. Nucleic Acids Research. PMID 37971304 DOI: 10.1093/nar/gkad1053  0.458
2023 Adler BA, Trinidad MI, Bellieny-Rabelo D, Zhang E, Karp HM, Skopintsev P, Thornton BW, Weissman RF, Yoon PH, Chen L, Hessler T, Eggers AR, Colognori D, Boger R, Doherty EE, ... ... Banfield JF, et al. CasPEDIA Database: a functional classification system for class 2 CRISPR-Cas enzymes. Nucleic Acids Research. PMID 37889041 DOI: 10.1093/nar/gkad890  0.417
2023 Yoon PH, Skopintsev P, Shi H, Chen LX, Adler BA, Al-Shimary M, Craig RJ, Li Z, Amerasekera J, Trinidad M, Nisonoff H, Chen K, Lahiri A, Boger R, Jacobsen S, ... Banfield JF, et al. Eukaryotic RNA-guided endonucleases evolved from a unique clade of bacterial enzymes. Biorxiv : the Preprint Server For Biology. PMID 37609353 DOI: 10.1101/2023.08.09.552727  0.448
2023 Eme L, Tamarit D, Caceres EF, Stairs CW, De Anda V, Schön ME, Seitz KW, Dombrowski N, Lewis WH, Homa F, Saw JH, Lombard J, Nunoura T, Li WJ, Hua ZS, ... ... Banfield JF, et al. Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes. Nature. PMID 37316666 DOI: 10.1038/s41586-023-06186-2  0.61
2022 Crits-Christoph A, Diamond S, Al-Shayeb B, Valentin-Alvarado L, Banfield JF. A widely distributed genus of soil Acidobacteria genomically enriched in biosynthetic gene clusters. Isme Communications. 2: 70. PMID 37938723 DOI: 10.1038/s43705-022-00140-5  0.753
2022 Al-Shayeb B, Skopintsev P, Soczek KM, Stahl EC, Li Z, Groover E, Smock D, Eggers AR, Pausch P, Cress BF, Huang CJ, Staskawicz B, Savage DF, Jacobsen SE, Banfield JF, et al. Diverse virus-encoded CRISPR-Cas systems include streamlined genome editors. Cell. 185: 4574-4586.e16. PMID 36423580 DOI: 10.1016/j.cell.2022.10.020  0.762
2022 Adler BA, Hessler T, Cress BF, Lahiri A, Mutalik VK, Barrangou R, Banfield J, Doudna JA. Broad-spectrum CRISPR-Cas13a enables efficient phage genome editing. Nature Microbiology. PMID 36316451 DOI: 10.1038/s41564-022-01258-x  0.465
2022 Al-Shayeb B, Schoelmerich MC, West-Roberts J, Valentin-Alvarado LE, Sachdeva R, Mullen S, Crits-Christoph A, Wilkins MJ, Williams KH, Doudna JA, Banfield JF. Borgs are giant genetic elements with potential to expand metabolic capacity. Nature. PMID 36261517 DOI: 10.1038/s41586-022-05256-1  0.79
2022 Borges AL, Lou YC, Sachdeva R, Al-Shayeb B, Penev PI, Jaffe AL, Lei S, Santini JM, Banfield JF. Widespread stop-codon recoding in bacteriophages may regulate translation of lytic genes. Nature Microbiology. 7: 918-927. PMID 35618772 DOI: 10.1038/s41564-022-01128-6  0.741
2022 Jaffe AL, Fuster M, Schoelmerich MC, Chen LX, Colombet J, Billard H, Sime-Ngando T, Banfield JF. Long-Term Incubation of Lake Water Enables Genomic Sampling of Consortia Involving and Candidate Phyla Radiation Bacteria. Msystems. e0022322. PMID 35353011 DOI: 10.1128/msystems.00223-22  0.33
2022 Edgar RC, Taylor J, Lin V, Altman T, Barbera P, Meleshko D, Lohr D, Novakovsky G, Buchfink B, Al-Shayeb B, Banfield JF, de la Peña M, Korobeynikov A, Chikhi R, Babaian A. Petabase-scale sequence alignment catalyses viral discovery. Nature. PMID 35082445 DOI: 10.1038/s41586-021-04332-2  0.726
2021 Rubin BE, Diamond S, Cress BF, Crits-Christoph A, Lou YC, Borges AL, Shivram H, He C, Xu M, Zhou Z, Smith SJ, Rovinsky R, Smock DCJ, Tang K, Owens TK, ... ... Banfield JF, et al. Species- and site-specific genome editing in complex bacterial communities. Nature Microbiology. PMID 34873292 DOI: 10.1038/s41564-021-01014-7  0.517
2021 Pausch P, Soczek KM, Herbst DA, Tsuchida CA, Al-Shayeb B, Banfield JF, Nogales E, Doudna JA. DNA interference states of the hypercompact CRISPR-CasΦ effector. Nature Structural & Molecular Biology. 28: 652-661. PMID 34381246 DOI: 10.1038/s41594-021-00632-3  0.736
2021 Shim H, Shivram H, Lei S, Doudna JA, Banfield JF. Diverse ATPase Proteins in Mobilomes Constitute a Large Potential Sink for Prokaryotic Host ATP. Frontiers in Microbiology. 12: 691847. PMID 34305853 DOI: 10.3389/fmicb.2021.691847  0.47
2021 Castelle CJ, Méheust R, Jaffe AL, Seitz K, Gong X, Baker BJ, Banfield JF. Protein Family Content Uncovers Lineage Relationships and Bacterial Pathway Maintenance Mechanisms in DPANN Archaea. Frontiers in Microbiology. 12: 660052. PMID 34140936 DOI: 10.3389/fmicb.2021.660052  0.621
2021 Wang JY, Hoel CM, Al-Shayeb B, Banfield JF, Brohawn SG, Doudna JA. Structural coordination between active sites of a CRISPR reverse transcriptase-integrase complex. Nature Communications. 12: 2571. PMID 33958590 DOI: 10.1038/s41467-021-22900-y  0.769
2021 De Anda V, Chen LX, Dombrowski N, Hua ZS, Jiang HC, Banfield JF, Li WJ, Baker BJ. Brockarchaeota, a novel archaeal phylum with unique and versatile carbon cycling pathways. Nature Communications. 12: 2404. PMID 33893309 DOI: 10.1038/s41467-021-22736-6  0.597
2021 Saha K, Sontheimer EJ, Brooks PJ, Dwinell MR, Gersbach CA, Liu DR, Murray SA, Tsai SQ, Wilson RC, Anderson DG, Asokan A, Banfield JF, Bankiewicz KS, Bao G, Bulte JWM, et al. The NIH Somatic Cell Genome Editing program. Nature. 592: 195-204. PMID 33828315 DOI: 10.1038/s41586-021-03191-1  0.462
2021 He C, Keren R, Whittaker ML, Farag IF, Doudna JA, Cate JHD, Banfield JF. Genome-resolved metagenomics reveals site-specific diversity of episymbiotic CPR bacteria and DPANN archaea in groundwater ecosystems. Nature Microbiology. PMID 33495623 DOI: 10.1038/s41564-020-00840-5  0.523
2021 Crits-Christoph A, Kantor RS, Olm MR, Whitney ON, Al-Shayeb B, Lou YC, Flamholz A, Kennedy LC, Greenwald H, Hinkle A, Hetzel J, Spitzer S, Koble J, Tan A, Hyde F, ... ... Banfield JF, et al. Genome Sequencing of Sewage Detects Regionally Prevalent SARS-CoV-2 Variants. Mbio. 12. PMID 33468686 DOI: 10.1128/mBio.02703-20  0.739
2020 Banda DM, Pereira JH, Liu AK, Orr DJ, Hammel M, He C, Parry MAJ, Carmo-Silva E, Adams PD, Banfield JF, Shih PM. Novel bacterial clade reveals origin of form I Rubisco. Nature Plants. PMID 32868887 DOI: 10.1038/S41477-020-00762-4  0.319
2020 Arbour TJ, Gilbert B, Banfield JF. Diverse Microorganisms in Sediment and Groundwater Are Implicated in Extracellular Redox Processes Based on Genomic Analysis of Bioanode Communities. Frontiers in Microbiology. 11: 1694. PMID 32849356 DOI: 10.3389/Fmicb.2020.01694  0.428
2020 Chen LX, Méheust R, Crits-Christoph A, McMahon KD, Nelson TC, Slater GF, Warren LA, Banfield JF. Large freshwater phages with the potential to augment aerobic methane oxidation. Nature Microbiology. PMID 32839536 DOI: 10.1038/S41564-020-0779-9  0.417
2020 Méheust R, Castelle CJ, Matheus Carnevali PB, Farag IF, He C, Chen LX, Amano Y, Hug LA, Banfield JF. Groundwater Elusimicrobia are metabolically diverse compared to gut microbiome Elusimicrobia and some have a novel nitrogenase paralog. The Isme Journal. PMID 32681159 DOI: 10.1038/S41396-020-0716-1  0.408
2020 Pausch P, Al-Shayeb B, Bisom-Rapp E, Tsuchida CA, Li Z, Cress BF, Knott GJ, Jacobsen SE, Banfield JF, Doudna JA. CRISPR-CasΦ from huge phages is a hypercompact genome editor. Science (New York, N.Y.). 369: 333-337. PMID 32675376 DOI: 10.1126/Science.Abb1400  0.78
2020 Harrington LB, Ma E, Chen JS, Witte IP, Gertz D, Paez-Espino D, Al-Shayeb B, Kyrpides NC, Burstein D, Banfield JF, Doudna JA. A scoutRNA Is Required for Some Type V CRISPR-Cas Systems. Molecular Cell. PMID 32645367 DOI: 10.1016/J.Molcel.2020.06.022  0.779
2020 Mu A, Thomas BC, Banfield JF, Moreau JW. Subsurface carbon monoxide oxidation capacity revealed through genome-resolved metagenomics of a carboxydotroph. Environmental Microbiology Reports. PMID 32633030 DOI: 10.1111/1758-2229.12868  0.799
2020 Sharrar AM, Crits-Christoph A, Méheust R, Diamond S, Starr EP, Banfield JF. Bacterial Secondary Metabolite Biosynthetic Potential in Soil Varies with Phylum, Depth, and Vegetation Type. Mbio. 11. PMID 32546614 DOI: 10.1128/Mbio.00416-20  0.35
2020 Gionfriddo CM, Stott MB, Power JF, Ogorek JM, Krabbenhoft DP, Wick R, Holt K, Chen LX, Thomas BC, Banfield JF, Moreau JW. Genome-resolved metagenomics and detailed geochemical speciation analyses yield new insights into microbial mercury cycling in geothermal springs. Applied and Environmental Microbiology. PMID 32414793 DOI: 10.1128/Aem.00176-20  0.808
2020 Crits-Christoph A, Olm MR, Diamond S, Bouma-Gregson K, Banfield JF. Soil bacterial populations are shaped by recombination and gene-specific selection across a grassland meadow. The Isme Journal. PMID 32327732 DOI: 10.1038/S41396-020-0655-X  0.398
2020 Probst AJ, Elling FJ, Castelle CJ, Zhu Q, Elvert M, Birarda G, Holman HN, Lane KR, Ladd B, Ryan MC, Woyke T, Hinrichs KU, Banfield JF. Lipid analysis of CO-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria. The Isme Journal. PMID 32203118 DOI: 10.1038/S41396-020-0624-4  0.35
2020 Chen LX, Anantharaman K, Shaiber A, Eren AM, Banfield JF. Accurate and complete genomes from metagenomes. Genome Research. PMID 32188701 DOI: 10.1101/Gr.258640.119  0.678
2020 Sher Y, Olm MR, Raveh-Sadka T, Brown CT, Sher R, Firek B, Baker R, Morowitz MJ, Banfield JF. Combined analysis of microbial metagenomic and metatranscriptomic sequencing data to assess in situ physiological conditions in the premature infant gut. Plos One. 15: e0229537. PMID 32130257 DOI: 10.1371/Journal.Pone.0229537  0.344
2020 Al-Shayeb B, Sachdeva R, Chen LX, Ward F, Munk P, Devoto A, Castelle CJ, Olm MR, Bouma-Gregson K, Amano Y, He C, Méheust R, Brooks B, Thomas A, Lavy A, ... ... Banfield JF, et al. Clades of huge phages from across Earth's ecosystems. Nature. PMID 32051592 DOI: 10.1038/S41586-020-2007-4  0.812
2020 Keren R, Lawrence JE, Zhuang W, Jenkins D, Banfield JF, Alvarez-Cohen L, Zhou L, Yu K. Increased replication of dissimilatory nitrate-reducing bacteria leads to decreased anammox bioreactor performance. Microbiome. 8: 7. PMID 31980038 DOI: 10.1186/S40168-020-0786-3  0.347
2020 Nuccio EE, Starr E, Karaoz U, Brodie EL, Zhou J, Tringe SG, Malmstrom RR, Woyke T, Banfield JF, Firestone MK, Pett-Ridge J. Niche differentiation is spatially and temporally regulated in the rhizosphere. The Isme Journal. PMID 31953507 DOI: 10.1038/S41396-019-0582-X  0.367
2019 Li Z, Yao Q, Guo X, Crits-Christoph A, Mayes MA, Iv WJH, Lebeis SL, Banfield JF, Hurst GB, Hettich RL, Pan C. Genome-Resolved Proteomic Stable Isotope Probing of Soil Microbial Communities Using CO and C-Methanol. Frontiers in Microbiology. 10: 2706. PMID 31866955 DOI: 10.3389/Fmicb.2019.02706  0.361
2019 Olm MR, Bhattacharya N, Crits-Christoph A, Firek BA, Baker R, Song YS, Morowitz MJ, Banfield JF. Necrotizing enterocolitis is preceded by increased gut bacterial replication, , and fimbriae-encoding bacteria. Science Advances. 5: eaax5727. PMID 31844663 DOI: 10.1126/Sciadv.Aax5727  0.337
2019 Starr EP, Nuccio EE, Pett-Ridge J, Banfield JF, Firestone MK. Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil. Proceedings of the National Academy of Sciences of the United States of America. PMID 31772013 DOI: 10.1073/Pnas.1908291116  0.329
2019 Sieber CMK, Paul BG, Castelle CJ, Hu P, Tringe SG, Valentine DL, Andersen GL, Banfield JF. Unusual Metabolism and Hypervariation in the Genome of a Gracilibacterium (BD1-5) from an Oil-Degrading Community. Mbio. 10. PMID 31719174 DOI: 10.1128/Mbio.02128-19  0.436
2019 Mori JF, Chen LX, Jessen GL, Rudderham SB, McBeth JM, Lindsay MBJ, Slater GF, Banfield JF, Warren LA. Putative Mixotrophic Nitrifying-Denitrifying Gammaproteobacteria Implicated in Nitrogen Cycling Within the Ammonia/Oxygen Transition Zone of an Oil Sands Pit Lake. Frontiers in Microbiology. 10: 2435. PMID 31708903 DOI: 10.3389/Fmicb.2019.02435  0.395
2019 Méheust R, Burstein D, Castelle CJ, Banfield JF. The distinction of CPR bacteria from other bacteria based on protein family content. Nature Communications. 10: 4173. PMID 31519891 DOI: 10.1038/S41467-019-12171-Z  0.343
2019 Lavy A, McGrath DG, Matheus Carnevali PB, Wan J, Dong W, Tokunaga TK, Thomas BC, Williams KH, Hubbard SS, Banfield JF. Microbial communities across a hillslope-riparian transect shaped by proximity to the stream, groundwater table, and weathered bedrock. Ecology and Evolution. 9: 6869-6900. PMID 31380022 DOI: 10.1002/Ece3.5254  0.366
2019 Chen LX, Al-Shayeb B, Méheust R, Li WJ, Doudna JA, Banfield JF. Candidate Phyla Radiation Roizmanbacteria From Hot Springs Have Novel and Unexpectedly Abundant CRISPR-Cas Systems. Frontiers in Microbiology. 10: 928. PMID 31130929 DOI: 10.3389/Fmicb.2019.00928  0.793
2019 Diamond S, Andeer PF, Li Z, Crits-Christoph A, Burstein D, Anantharaman K, Lane KR, Thomas BC, Pan C, Northen TR, Banfield JF. Mediterranean grassland soil C-N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms. Nature Microbiology. PMID 31110364 DOI: 10.1038/S41564-019-0449-Y  0.662
2019 Poghosyan L, Koch H, Lavy A, Frank J, van Kessel MAHJ, Jetten MSM, Banfield JF, Lücker S. Metagenomic recovery of two distinct comammox Nitrospira from the terrestrial subsurface. Environmental Microbiology. PMID 31107587 DOI: 10.1111/1462-2920.14691  0.391
2019 Schwank K, Bornemann TLV, Dombrowski N, Spang A, Banfield JF, Probst AJ. An archaeal symbiont-host association from the deep terrestrial subsurface. The Isme Journal. PMID 31048756 DOI: 10.1038/S41396-019-0421-0  0.337
2019 Watts MP, Spurr LP, Lê Cao KA, Wick R, Banfield JF, Moreau JW. Genome-resolved metagenomics of an autotrophic thiocyanate-remediating microbial bioreactor consortium. Water Research. 158: 106-117. PMID 31022528 DOI: 10.1016/J.Watres.2019.02.058  0.709
2019 Matheus Carnevali PB, Schulz F, Castelle CJ, Kantor RS, Shih PM, Sharon I, Santini JM, Olm MR, Amano Y, Thomas BC, Anantharaman K, Burstein D, Becraft ED, Stepanauskas R, Woyke T, ... Banfield JF, et al. Author Correction: Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria. Nature Communications. 10: 1451. PMID 30914645 DOI: 10.1038/S41467-019-09423-3  0.582
2019 Borrel G, Adam PS, McKay LJ, Chen LX, Sierra-García IN, Sieber CMK, Letourneur Q, Ghozlane A, Andersen GL, Li WJ, Hallam SJ, Muyzer G, de Oliveira VM, Inskeep WP, Banfield JF, et al. Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea. Nature Microbiology. PMID 30833729 DOI: 10.1038/S41564-019-0363-3  0.38
2019 Bouma-Gregson K, Olm MR, Probst AJ, Anantharaman K, Power ME, Banfield JF. Impacts of microbial assemblage and environmental conditions on the distribution of anatoxin-a producing cyanobacteria within a river network. The Isme Journal. PMID 30809011 DOI: 10.1038/S41396-019-0374-3  0.666
2019 Wright AV, Wang JY, Burstein D, Harrington LB, Paez-Espino D, Kyrpides NC, Iavarone AT, Banfield JF, Doudna JA. A Functional Mini-Integrase in a Two-Protein-type V-C CRISPR System. Molecular Cell. PMID 30709710 DOI: 10.1016/J.Molcel.2018.12.015  0.499
2019 Devoto AE, Santini JM, Olm MR, Anantharaman K, Munk P, Tung J, Archie EA, Turnbaugh PJ, Seed KD, Blekhman R, Aarestrup FM, Thomas BC, Banfield JF. Megaphages infect Prevotella and variants are widespread in gut microbiomes. Nature Microbiology. PMID 30692672 DOI: 10.1038/S41564-018-0338-9  0.684
2019 Matheus Carnevali PB, Schulz F, Castelle CJ, Kantor RS, Shih PM, Sharon I, Santini JM, Olm MR, Amano Y, Thomas BC, Anantharaman K, Burstein D, Becraft ED, Stepanauskas R, Woyke T, ... Banfield JF, et al. Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria. Nature Communications. 10: 463. PMID 30692531 DOI: 10.1038/S41467-018-08246-Y  0.655
2019 Bond PL, Banfield JF. Design and Performance of rRNA Targeted Oligonucleotide Probes for in Situ Detection and Phylogenetic Identification of Microorganisms Inhabiting Acid Mine Drainage Environments. Microbial Ecology. 41: 149-161. PMID 12032620 DOI: 10.1007/S002480000063  0.334
2018 Jaffe AL, Castelle CJ, Dupont CL, Banfield JF. Lateral gene transfer shapes the distribution of RuBisCO among Candidate Phyla Radiation bacteria and DPANN archaea. Molecular Biology and Evolution. PMID 30544151 DOI: 10.1093/Molbev/Msy234  0.407
2018 Harrington LB, Burstein D, Chen JS, Paez-Espino D, Ma E, Witte IP, Cofsky JC, Kyrpides NC, Banfield JF, Doudna JA. Programmed DNA destruction by miniature CRISPR-Cas14 enzymes. Science (New York, N.Y.). PMID 30337455 DOI: 10.1126/Science.Aav4294  0.504
2018 Goltsman DSA, Sun CL, Proctor DM, DiGiulio DB, Robaczewska A, Thomas BC, Shaw GM, Stevenson DK, Holmes SP, Banfield JF, Relman DA. Metagenomic analysis with strain-level resolution reveals fine-scale variation in the human pregnancy microbiome. Genome Research. PMID 30232199 DOI: 10.1101/Gr.236000.118  0.364
2018 Castelle CJ, Brown CT, Anantharaman K, Probst AJ, Huang RH, Banfield JF. Biosynthetic capacity, metabolic variety and unusual biology in the CPR and DPANN radiations. Nature Reviews. Microbiology. PMID 30181663 DOI: 10.1038/S41579-018-0076-2  0.669
2018 Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Banfield JF, et al. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 36: 660. PMID 29979671 DOI: 10.1038/Nbt0718-660A  0.693
2018 Crits-Christoph A, Diamond S, Butterfield CN, Thomas BC, Banfield JF. Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis. Nature. PMID 29899444 DOI: 10.1038/S41586-018-0207-Y  0.372
2018 Liu X, Li M, Castelle CJ, Probst AJ, Zhou Z, Pan J, Liu Y, Banfield JF, Gu JD. Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages. Microbiome. 6: 102. PMID 29884244 DOI: 10.1186/S40168-018-0488-2  0.595
2018 Sieber CMK, Probst AJ, Sharrar A, Thomas BC, Hess M, Tringe SG, Banfield JF. Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy. Nature Microbiology. PMID 29807988 DOI: 10.1038/S41564-018-0171-1  0.399
2018 Probst AJ, Banfield JF. Homologous Recombination and Transposon Propagation Shape the Population Structure of an Organism from the Deep Subsurface with Minimal Metabolism. Genome Biology and Evolution. 10: 1115-1119. PMID 29672704 DOI: 10.1093/Gbe/Evy067  0.396
2018 Brown CT, Xiong W, Olm MR, Thomas BC, Baker R, Firek B, Morowitz MJ, Hettich RL, Banfield JF. Hospitalized Premature Infants Are Colonized by Related Bacterial Strains with Distinct Proteomic Profiles. Mbio. 9. PMID 29636439 DOI: 10.1128/Mbio.00441-18  0.308
2018 Castelle CJ, Banfield JF. Major New Microbial Groups Expand Diversity and Alter our Understanding of the Tree of Life. Cell. 172: 1181-1197. PMID 29522741 DOI: 10.1016/J.Cell.2018.02.016  0.427
2018 West PT, Probst AJ, Grigoriev IV, Thomas BC, Banfield JF. Genome-reconstruction for eukaryotes from complex natural microbial communities. Genome Research. PMID 29496730 DOI: 10.1101/Gr.228429.117  0.435
2018 Anantharaman K, Hausmann B, Jungbluth SP, Kantor RS, Lavy A, Warren LA, Rappé MS, Pester M, Loy A, Thomas BC, Banfield JF. Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle. The Isme Journal. PMID 29467397 DOI: 10.1038/S41396-018-0078-0  0.692
2018 Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Banfield JF, et al. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 36: 196. PMID 29406516 DOI: 10.1038/Nbt0218-196A  0.713
2018 Probst AJ, Ladd B, Jarett JK, Geller-McGrath DE, Sieber CMK, Emerson JB, Anantharaman K, Thomas BC, Malmstrom RR, Stieglmeier M, Klingl A, Woyke T, Ryan MC, Banfield JF. Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface. Nature Microbiology. PMID 29379208 DOI: 10.1038/S41564-017-0098-Y  0.689
2017 Lavy A, Keren R, Yu K, Thomas BC, Alvarez-Cohen L, Banfield JF, Ilan M. A novel Chromatiales bacterium is a potential sulfide oxidizer in multiple orders of marine sponges. Environmental Microbiology. PMID 29194919 DOI: 10.1111/1462-2920.14013  0.399
2017 Banfield JF, Anantharaman K, Williams KH, Thomas BC. Complete 4.55-Megabase-Pair Genome of "Candidatus Fluviicola riflensis," Curated from Short-Read Metagenomic Sequences. Genome Announcements. 5. PMID 29167246 DOI: 10.1128/Genomea.01299-17  0.65
2017 Dudek NK, Sun CL, Burstein D, Kantor RS, Aliaga Goltsman DS, Bik EM, Thomas BC, Banfield JF, Relman DA. Novel Microbial Diversity and Functional Potential in the Marine Mammal Oral Microbiome. Current Biology : Cb. PMID 29153320 DOI: 10.1016/J.Cub.2017.10.040  0.432
2017 Probst AJ, Hu P, Sun CL, Dubinsky EA, Sieber CMK, Banfield JF, Andersen GL. Reply to Delmont and Eren: Strain variants and population structure during the Deepwater Horizon oil spill. Proceedings of the National Academy of Sciences of the United States of America. 114: E8950-E8952. PMID 29073089 DOI: 10.1073/Pnas.1712466114  0.321
2017 Ino K, Hernsdorf AW, Konno U, Kouduka M, Yanagawa K, Kato S, Sunamura M, Hirota A, Togo YS, Ito K, Fukuda A, Iwatsuki T, Mizuno T, Komatsu DD, Tsunogai U, ... ... Banfield JF, et al. Ecological and genomic profiling of anaerobic methane-oxidizing archaea in a deep granitic environment. The Isme Journal. PMID 28885627 DOI: 10.1038/Ismej.2017.140  0.557
2017 Finstad KM, Probst AJ, Thomas BC, Andersen GL, Demergasso C, Echeverría A, Amundson RG, Banfield JF. Microbial Community Structure and the Persistence of Cyanobacterial Populations in Salt Crusts of the Hyperarid Atacama Desert from Genome-Resolved Metagenomics. Frontiers in Microbiology. 8: 1435. PMID 28804480 DOI: 10.3389/Fmicb.2017.01435  0.425
2017 Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Banfield JF, et al. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 35: 725-731. PMID 28787424 DOI: 10.1038/Nbt.3893  0.726
2017 Olm MR, Brown CT, Brooks B, Banfield JF. dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication. The Isme Journal. PMID 28742071 DOI: 10.1038/Ismej.2017.126  0.356
2017 Xiong W, Brown CT, Morowitz MJ, Banfield JF, Hettich RL. Genome-resolved metaproteomic characterization of preterm infant gut microbiota development reveals species-specific metabolic shifts and variabilities during early life. Microbiome. 5: 72. PMID 28693612 DOI: 10.1186/S40168-017-0290-6  0.337
2017 Hu P, Dubinsky EA, Probst AJ, Wang J, Sieber CMK, Tom LM, Gardinali PR, Banfield JF, Atlas RM, Andersen GL. Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders. Proceedings of the National Academy of Sciences of the United States of America. PMID 28652349 DOI: 10.1073/Pnas.1703424114  0.306
2017 Costello EK, Sun CL, Carlisle EM, Morowitz MJ, Banfield JF, Relman DA. Candidatus Mycoplasma girerdii replicates, diversifies, and co-occurs with Trichomonas vaginalis in the oral cavity of a premature infant. Scientific Reports. 7: 3764. PMID 28630471 DOI: 10.1038/S41598-017-03821-7  0.364
2017 Paul BG, Burstein D, Castelle CJ, Handa S, Arambula D, Czornyj E, Thomas BC, Ghosh P, Miller JF, Banfield JF, Valentine DL. Retroelement-guided protein diversification abounds in vast lineages of Bacteria and Archaea. Nature Microbiology. 2: 17045. PMID 28368387 DOI: 10.1038/Nmicrobiol.2017.45  0.39
2017 Hernsdorf AW, Amano Y, Miyakawa K, Ise K, Suzuki Y, Anantharaman K, Probst A, Burstein D, Thomas BC, Banfield JF. Potential for microbial H2 and metal transformations associated with novel bacteria and archaea in deep terrestrial subsurface sediments. The Isme Journal. PMID 28350393 DOI: 10.1038/Ismej.2017.39  0.725
2017 Olm MR, Butterfield CN, Copeland A, Boles TC, Thomas BC, Banfield JF. The Source and Evolutionary History of a Microbial Contaminant Identified Through Soil Metagenomic Analysis. Mbio. 8. PMID 28223457 DOI: 10.1128/Mbio.01969-16  0.358
2017 Kantor RS, Huddy RJ, Iyer RM, Thomas BC, Brown CT, Anantharaman K, Tringe SG, Hettich RL, Harrison ST, Banfield JF. Genome-resolved meta-omics ties microbial dynamics to process performance in biotechnology for thiocyanate degradation. Environmental Science & Technology. PMID 28139919 DOI: 10.1021/Acs.Est.6B04477  0.662
2017 Zaremba-Niedzwiedzka K, Caceres EF, Saw JH, Bäckström D, Juzokaite L, Vancaester E, Seitz KW, Anantharaman K, Starnawski P, Kjeldsen KU, Stott MB, Nunoura T, Banfield JF, Schramm A, Baker BJ, et al. Asgard archaea illuminate the origin of eukaryotic cellular complexity. Nature. PMID 28077874 DOI: 10.1038/Nature21031  0.742
2017 Olm MR, Brown CT, Brooks B, Firek B, Baker R, Burstein D, Soenjoyo K, Thomas BC, Morowitz M, Banfield J. Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates. Genome Research. PMID 28073918 DOI: 10.1101/Gr.213256.116  0.329
2017 Castelle CJ, Brown CT, Thomas BC, Williams KH, Banfield JF. Unusual respiratory capacity and nitrogen metabolism in a Parcubacterium (OD1) of the Candidate Phyla Radiation. Scientific Reports. 7: 40101. PMID 28067254 DOI: 10.1038/Srep40101  0.4
2017 Huddy RJ, Kadzinga F, Rahman SF, Kantor R, Banfield JF, Harrison ST. Analysis of Microbial Communities Associated with Bioremediation Systems for Thiocyanate-Laden Mine Water Effluents Solid State Phenomena. 262: 601-604. DOI: 10.4028/Www.Scientific.Net/Ssp.262.601  0.373
2017 Mangiante DM, Schaller RD, Zarzycki P, Banfield JF, Gilbert B. Mechanism of Ferric Oxalate Photolysis Acs Earth and Space Chemistry. 1: 270-276. DOI: 10.1021/Acsearthspacechem.7B00026  0.3
2016 Burstein D, Harrington LB, Strutt SC, Probst AJ, Anantharaman K, Thomas BC, Doudna JA, Banfield JF. New CRISPR-Cas systems from uncultivated microbes. Nature. PMID 28005056 DOI: 10.1038/Nature21059  0.706
2016 Butterfield CN, Li Z, Andeer PF, Spaulding S, Thomas BC, Singh A, Hettich RL, Suttle KB, Probst AJ, Tringe SG, Northen T, Pan C, Banfield JF. Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone. Peerj. 4: e2687. PMID 27843720 DOI: 10.7717/Peerj.2687  0.347
2016 Brown CT, Olm MR, Thomas BC, Banfield JF. Measurement of bacterial replication rates in microbial communities. Nature Biotechnology. PMID 27819664 DOI: 10.1038/Nbt.3704  0.411
2016 Anantharaman K, Brown CT, Hug LA, Sharon I, Castelle CJ, Probst AJ, Thomas BC, Singh A, Wilkins MJ, Karaoz U, Brodie EL, Williams KH, Hubbard SS, Banfield JF. Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system. Nature Communications. 7: 13219. PMID 27774985 DOI: 10.1038/Ncomms13219  0.692
2016 Hug LA, Baker BJ, Anantharaman K, Brown CT, Probst AJ, Castelle CJ, Butterfield CN, Hernsdorf AW, Amano Y, Ise K, Suzuki Y, Dudek N, Relman DA, Finstad KM, Amundson R, ... ... Banfield JF, et al. A new view of the tree of life. Nature Microbiology. 1: 16048. PMID 27572647 DOI: 10.1038/Nmicrobiol.2016.48  0.794
2016 Long PE, Williams KH, Hubbard SS, Banfield JF. Microbial Metagenomics Reveals Climate-Relevant Subsurface Biogeochemical Processes. Trends in Microbiology. PMID 27156744 DOI: 10.1016/J.Tim.2016.04.006  0.391
2016 Wrighton KC, Castelle CJ, Varaljay VA, Satagopan S, Brown CT, Wilkins MJ, Thomas BC, Sharon I, Williams KH, Tabita FR, Banfield JF. RubisCO of a nucleoside pathway known from Archaea is found in diverse uncultivated phyla in bacteria. The Isme Journal. PMID 27137126 DOI: 10.1038/Ismej.2016.53  0.391
2016 Probst AJ, Castelle CJ, Singh A, Brown CT, Anantharaman K, Sharon I, Hug LA, Burstein D, Emerson JB, Thomas BC, Banfield JF. Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations. Environmental Microbiology. PMID 27112493 DOI: 10.1111/1462-2920.13362  0.669
2016 Mosier AC, Miller CS, Frischkorn KR, Ohm RA, Li Z, LaButti K, Lapidus A, Lipzen A, Chen C, Johnson J, Lindquist EA, Pan C, Hettich RL, Grigoriev IV, Singer SW, ... Banfield JF, et al. Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage. Frontiers in Microbiology. 7: 238. PMID 26973616 DOI: 10.3389/Fmicb.2016.00238  0.403
2016 Anantharaman K, Brown CT, Burstein D, Castelle CJ, Probst AJ, Thomas BC, Williams KH, Banfield JF. Analysis of five complete genome sequences for members of the class Peribacteria in the recently recognized Peregrinibacteria bacterial phylum. Peerj. 4: e1607. PMID 26844018 DOI: 10.7717/Peerj.1607  0.686
2016 Burstein D, Sun CL, Brown CT, Sharon I, Anantharaman K, Probst AJ, Thomas BC, Banfield JF. Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems. Nature Communications. 7: 10613. PMID 26837824 DOI: 10.1038/Ncomms10613  0.643
2016 Hu P, Tom L, Singh A, Thomas BC, Baker BJ, Piceno YM, Andersen GL, Banfield JF. Genome-Resolved Metagenomic Analysis Reveals Roles for Candidate Phyla and Other Microbial Community Members in Biogeochemical Transformations in Oil Reservoirs. Mbio. 7. PMID 26787827 DOI: 10.1128/Mbio.01669-15  0.64
2016 Legg BA, Zhu M, Zhang H, Waychunas G, Gilbert B, Banfield JF. A Model for Nucleation When Nuclei Are Nonstoichiometric: Understanding the Precipitation of Iron Oxyhydroxide Nanoparticles Crystal Growth and Design. 16: 5726-5737. DOI: 10.1021/Acs.Cgd.6B00809  0.745
2016 Zhu M, Frandsen C, Wallace AF, Legg B, Khalid S, Zhang H, Mørup S, Banfield JF, Waychunas GA. Precipitation pathways for ferrihydrite formation in acidic solutions Geochimica Et Cosmochimica Acta. 172: 247-264. DOI: 10.1016/J.Gca.2015.09.015  0.75
2015 Varaljay VA, Satagopan S, North JA, Witte B, Dourado MN, Anantharaman K, Arbing MA, Hoeft McCann S, Oremland RS, Banfield JF, Wrighton KC, Tabita FR. Functional metagenomic selection of RubisCO from uncultivated bacteria. Environmental Microbiology. PMID 26617072 DOI: 10.1111/1462-2920.13138  0.657
2015 Sun CL, Thomas BC, Barrangou R, Banfield JF. Metagenomic reconstructions of bacterial CRISPR loci constrain population histories. The Isme Journal. PMID 26394009 DOI: 10.1038/Ismej.2015.162  0.361
2015 Fakra SC, Luef B, Castelle CJ, Mullin SW, Williams KH, Marcus MA, Schichnes D, Banfield JF. Correlative cryogenic spectro-microscopy to investigate Selenium bioreduction products. Environmental Science & Technology. PMID 26371540 DOI: 10.1021/Acs.Est.5B01409  0.328
2015 De Yoreo JJ, Gilbert PU, Sommerdijk NA, Penn RL, Whitelam S, Joester D, Zhang H, Rimer JD, Navrotsky A, Banfield JF, Wallace AF, Michel FM, Meldrum FC, Cölfen H, Dove PM. CRYSTAL GROWTH. Crystallization by particle attachment in synthetic, biogenic, and geologic environments. Science (New York, N.Y.). 349: aaa6760. PMID 26228157 DOI: 10.1126/Science.Aaa6760  0.646
2015 Zhang H, Waychunas GA, Banfield JF. Molecular Dynamics Simulation Study of the Early Stages of Nucleation of Iron Oxyhydroxide Nanoparticles in Aqueous Solutions. The Journal of Physical Chemistry. B. 119: 10630-42. PMID 26222332 DOI: 10.1021/Acs.Jpcb.5B03801  0.728
2015 Brooks B, Mueller RS, Young JC, Morowitz MJ, Hettich RL, Banfield JF. Strain-resolved microbial community proteomics reveals simultaneous aerobic and anaerobic function during gastrointestinal tract colonization of a preterm infant. Frontiers in Microbiology. 6: 654. PMID 26191049 DOI: 10.3389/Fmicb.2015.00654  0.371
2015 Brown CT, Hug LA, Thomas BC, Sharon I, Castelle CJ, Singh A, Wilkins MJ, Wrighton KC, Williams KH, Banfield JF. Unusual biology across a group comprising more than 15% of domain Bacteria. Nature. 523: 208-11. PMID 26083755 DOI: 10.1038/Nature14486  0.407
2015 Young JC, Pan C, Adams RM, Brooks B, Banfield JF, Morowitz MJ, Hettich RL. Metaproteomics reveals functional shifts in microbial and human proteins during a preterm infant gut colonization case. Proteomics. PMID 26077811 DOI: 10.1002/Pmic.201400563  0.337
2015 Hug LA, Thomas BC, Sharon I, Brown CT, Sharma R, Hettich RL, Wilkins MJ, Williams KH, Singh A, Banfield JF. Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineages. Environmental Microbiology. PMID 26033198 DOI: 10.1111/1462-2920.12930  0.418
2015 Kantor RS, van Zyl AW, van Hille RP, Thomas BC, Harrison ST, Banfield JF. Bioreactor microbial ecosystems for thiocyanate and cyanide degradation unraveled with genome-resolved metagenomics. Environmental Microbiology. PMID 26031303 DOI: 10.1111/1462-2920.12936  0.424
2015 Andrade K, Logemann J, Heidelberg KB, Emerson JB, Comolli LR, Hug LA, Probst AJ, Keillar A, Thomas BC, Miller CS, Allen EE, Moreau JW, Brocks JJ, Banfield JF. Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem. The Isme Journal. PMID 25918833 DOI: 10.1038/Ismej.2015.66  0.711
2015 Paez-Espino D, Sharon I, Morovic W, Stahl B, Thomas BC, Barrangou R, Banfield JF. CRISPR immunity drives rapid phage genome evolution in Streptococcus thermophilus. Mbio. 6. PMID 25900652 DOI: 10.1128/Mbio.00262-15  0.371
2015 Emerson JB, Thomas BC, Alvarez W, Banfield JF. Metagenomic analysis of a high carbon dioxide subsurface microbial community populated by chemolithoautotrophs and bacteria and archaea from candidate phyla. Environmental Microbiology. PMID 25727367 DOI: 10.1111/1462-2920.12817  0.37
2015 Luef B, Frischkorn KR, Wrighton KC, Holman HY, Birarda G, Thomas BC, Singh A, Williams KH, Siegerist CE, Tringe SG, Downing KH, Comolli LR, Banfield JF. Diverse uncultivated ultra-small bacterial cells in groundwater. Nature Communications. 6: 6372. PMID 25721682 DOI: 10.1038/Ncomms7372  0.387
2015 Tully BJ, Emerson JB, Andrade K, Brocks JJ, Allen EE, Banfield JF, Heidelberg KB. De novo sequences of Haloquadratum walsbyi from Lake Tyrrell, Australia, reveal a variable genomic landscape. Archaea (Vancouver, B.C.). 2015: 875784. PMID 25709557 DOI: 10.1155/2015/875784  0.394
2015 Castelle CJ, Wrighton KC, Thomas BC, Hug LA, Brown CT, Wilkins MJ, Frischkorn KR, Tringe SG, Singh A, Markillie LM, Taylor RC, Williams KH, Banfield JF. Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling. Current Biology : Cb. 25: 690-701. PMID 25702576 DOI: 10.1016/J.Cub.2015.01.014  0.367
2015 Sharon I, Kertesz M, Hug LA, Pushkarev D, Blauwkamp TA, Castelle CJ, Amirebrahimi M, Thomas BC, Burstein D, Tringe SG, Williams KH, Banfield JF. Accurate, multi-kb reads resolve complex populations and detect rare microorganisms. Genome Research. 25: 534-43. PMID 25665577 DOI: 10.1101/Gr.183012.114  0.417
2015 Hug LA, Thomas BC, Brown CT, Frischkorn KR, Williams KH, Tringe SG, Banfield JF. Aquifer environment selects for microbial species cohorts in sediment and groundwater. The Isme Journal. 9: 1846-56. PMID 25647349 DOI: 10.1038/Ismej.2015.2  0.38
2015 Aliaga Goltsman DS, Comolli LR, Thomas BC, Banfield JF. Community transcriptomics reveals unexpected high microbial diversity in acidophilic biofilm communities. The Isme Journal. 9: 1014-23. PMID 25361394 DOI: 10.1038/Ismej.2014.200  0.428
2015 Mosier AC, Li Z, Thomas BC, Hettich RL, Pan C, Banfield JF. Elevated temperature alters proteomic responses of individual organisms within a biofilm community. The Isme Journal. 9: 180-94. PMID 25050524 DOI: 10.1038/Ismej.2014.113  0.356
2015 Handley KM, Wrighton KC, Miller CS, Wilkins MJ, Kantor RS, Thomas BC, Williams KH, Gilbert JA, Long PE, Banfield JF. Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting points. Environmental Microbiology. 17: 622-36. PMID 24674078 DOI: 10.1111/1462-2920.12467  0.363
2015 Huddy RJ, Kantor R, van Zyl W, van Hille RP, Banfield JF, Harrison ST. Analysis of the Microbial Community Associated with a Bioprocess System for Bioremediation of Thiocyanate- and Cyanide-Laden Mine Water Effluents Advanced Materials Research. 1130: 614-617. DOI: 10.4028/Www.Scientific.Net/Amr.1130.614  0.349
2015 Dideriksen K, Frandsen C, Bovet N, Wallace AF, Sel O, Arbour T, Navrotsky A, De Yoreo JJ, Banfield JF. Formation and transformation of a short range ordered iron carbonate precursor Geochimica Et Cosmochimica Acta. 164: 53-70. DOI: 10.1016/J.Gca.2015.05.005  0.312
2015 Long PE, Williams KH, Davis JA, Fox PM, Wilkins MJ, Yabusaki SB, Fang Y, Waichler SR, Berman ESF, Gupta M, Chandler DP, Murray C, Peacock AD, Giloteaux L, Handley KM, ... ... Banfield JF, et al. Bicarbonate impact on U(VI) bioreduction in a shallow alluvial aquifer Geochimica Et Cosmochimica Acta. 150: 106-124. DOI: 10.1016/J.Gca.2014.11.013  0.302
2014 Justice NB, Norman A, Brown CT, Singh A, Thomas BC, Banfield JF. Comparison of environmental and isolate Sulfobacillus genomes reveals diverse carbon, sulfur, nitrogen, and hydrogen metabolisms. Bmc Genomics. 15: 1107. PMID 25511286 DOI: 10.1186/1471-2164-15-1107  0.432
2014 Probst AJ, Weinmaier T, Raymann K, Perras A, Emerson JB, Rattei T, Wanner G, Klingl A, Berg IA, Yoshinaga M, Viehweger B, Hinrichs KU, Thomas BC, Meck S, Auerbach AK, ... ... Banfield JF, et al. Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface. Nature Communications. 5: 5497. PMID 25425419 DOI: 10.1038/Ncomms6497  0.382
2014 Legg BA, Zhu M, Comolli LR, Gilbert B, Banfield JF. Impacts of ionic strength on three-dimensional nanoparticle aggregate structure and consequences for environmental transport and deposition. Environmental Science & Technology. 48: 13703-10. PMID 25380400 DOI: 10.1021/Es502654Q  0.743
2014 Legg BA, Zhu M, Comolli LR, Gilbert B, Banfield JF. Determination of the three-dimensional structure of ferrihydrite nanoparticle aggregates. Langmuir : the Acs Journal of Surfaces and Colloids. 30: 9931-40. PMID 25079430 DOI: 10.1021/La502128D  0.744
2014 Li Z, Wang Y, Yao Q, Justice NB, Ahn TH, Xu D, Hettich RL, Banfield JF, Pan C. Diverse and divergent protein post-translational modifications in two growth stages of a natural microbial community. Nature Communications. 5: 4405. PMID 25059763 DOI: 10.1038/Ncomms5405  0.359
2014 Hanke A, Hamann E, Sharma R, Geelhoed JS, Hargesheimer T, Kraft B, Meyer V, Lenk S, Osmers H, Wu R, Makinwa K, Hettich RL, Banfield JF, Tegetmeyer HE, Strous M. Recoding of the stop codon UGA to glycine by a BD1-5/SN-2 bacterium and niche partitioning between Alpha- and Gammaproteobacteria in a tidal sediment microbial community naturally selected in a laboratory chemostat. Frontiers in Microbiology. 5: 231. PMID 24904545 DOI: 10.3389/Fmicb.2014.00231  0.388
2014 Justice NB, Li Z, Wang Y, Spaudling SE, Mosier AC, Hettich RL, Pan C, Banfield JF. (15)N- and (2)H proteomic stable isotope probing links nitrogen flow to archaeal heterotrophic activity. Environmental Microbiology. 16: 3224-37. PMID 24750948 DOI: 10.1111/1462-2920.12488  0.355
2014 Wrighton KC, Castelle CJ, Wilkins MJ, Hug LA, Sharon I, Thomas BC, Handley KM, Mullin SW, Nicora CD, Singh A, Lipton MS, Long PE, Williams KH, Banfield JF. Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer. The Isme Journal. 8: 1452-63. PMID 24621521 DOI: 10.1038/Ismej.2013.249  0.405
2014 Pan C, Banfield JF. Quantitative metaproteomics: functional insights into microbial communities. Methods in Molecular Biology (Clifton, N.J.). 1096: 231-40. PMID 24515373 DOI: 10.1007/978-1-62703-712-9_18  0.359
2014 Brooks B, Firek BA, Miller CS, Sharon I, Thomas BC, Baker R, Morowitz MJ, Banfield JF. Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants. Microbiome. 2: 1. PMID 24468033 DOI: 10.1186/2049-2618-2-1  0.307
2014 Podell S, Emerson JB, Jones CM, Ugalde JA, Welch S, Heidelberg KB, Banfield JF, Allen EE. Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community. The Isme Journal. 8: 979-90. PMID 24335829 DOI: 10.1038/Ismej.2013.221  0.625
2014 Vu TA, Reagan MM, Li D, Legg B, De Yoreo JJ, Banfield JF, Zhang H. Kinetics of crystal growth of nanogoethite in aqueous solutions containing nitrate and sulfate anions Crystengcomm. 16: 1466-1471. DOI: 10.1039/C3Ce41685B  0.701
2014 Frandsen C, Legg BA, Comolli LR, Zhang H, Gilbert B, Johnson E, Banfield JF. Aggregation-induced growth and transformation of β-FeOOH nanorods to micron-sized α-Fe2O3 spindles Crystengcomm. 16: 1451-1458. DOI: 10.1039/C3Ce40983J  0.692
2013 Garrity GM, Banfield J, Eisen J, van der Lelie N, McMahon T, Rusch D, Delong E, Moran MA, Currie C, Furhman J, Hallam S, Hugenholtz P, Moran N, Nelson K, Roberts R, et al. Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013. Standards in Genomic Sciences. 8: 561-70. PMID 24501639 DOI: 10.4056/Sigs.4638348  0.498
2013 Brown CT, Sharon I, Thomas BC, Castelle CJ, Morowitz MJ, Banfield JF. Genome resolved analysis of a premature infant gut microbial community reveals a Varibaculum cambriense genome and a shift towards fermentation-based metabolism during the third week of life. Microbiome. 1: 30. PMID 24451181 DOI: 10.1186/2049-2618-1-30  0.361
2013 Hug LA, Castelle CJ, Wrighton KC, Thomas BC, Sharon I, Frischkorn KR, Williams KH, Tringe SG, Banfield JF. Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling. Microbiome. 1: 22. PMID 24450983 DOI: 10.1186/2049-2618-1-22  0.42
2013 Sharon I, Banfield JF. Microbiology. Genomes from metagenomics. Science (New York, N.Y.). 342: 1057-8. PMID 24288324 DOI: 10.1126/Science.1247023  0.413
2013 Acuña LG, Cárdenas JP, Covarrubias PC, Haristoy JJ, Flores R, Nuñez H, Riadi G, Shmaryahu A, Valdés J, Dopson M, Rawlings DE, Banfield JF, Holmes DS, Quatrini R. Architecture and gene repertoire of the flexible genome of the extreme acidophile Acidithiobacillus caldus. Plos One. 8: e78237. PMID 24250794 DOI: 10.1371/Journal.Pone.0078237  0.405
2013 Kantor RS, Wrighton KC, Handley KM, Sharon I, Hug LA, Castelle CJ, Thomas BC, Banfield JF. Small genomes and sparse metabolisms of sediment-associated bacteria from four candidate phyla. Mbio. 4: e00708-13. PMID 24149512 DOI: 10.1128/Mbio.00708-13  0.444
2013 Di Rienzi SC, Sharon I, Wrighton KC, Koren O, Hug LA, Thomas BC, Goodrich JK, Bell JT, Spector TD, Banfield JF, Ley RE. The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria. Elife. 2: e01102. PMID 24137540 DOI: 10.7554/Elife.01102  0.38
2013 Emerson JB, Thomas BC, Andrade K, Heidelberg KB, Banfield JF. New approaches indicate constant viral diversity despite shifts in assemblage structure in an Australian hypersaline lake. Applied and Environmental Microbiology. 79: 6755-64. PMID 23995931 DOI: 10.1128/Aem.01946-13  0.343
2013 Castelle CJ, Hug LA, Wrighton KC, Thomas BC, Williams KH, Wu D, Tringe SG, Singer SW, Eisen JA, Banfield JF. Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment. Nature Communications. 4: 2120. PMID 23979677 DOI: 10.1038/Ncomms3120  0.421
2013 Wallace AF, Hedges LO, Fernandez-Martinez A, Raiteri P, Gale JD, Waychunas GA, Whitelam S, Banfield JF, De Yoreo JJ. Microscopic evidence for liquid-liquid separation in supersaturated CaCO3 solutions. Science (New York, N.Y.). 341: 885-9. PMID 23970697 DOI: 10.1126/Science.1230915  0.711
2013 Yelton AP, Comolli LR, Justice NB, Castelle C, Denef VJ, Thomas BC, Banfield JF. Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea. Bmc Genomics. 14: 485. PMID 23865623 DOI: 10.1186/1471-2164-14-485  0.826
2013 Emerson JB, Andrade K, Thomas BC, Norman A, Allen EE, Heidelberg KB, Banfield JF. Virus-host and CRISPR dynamics in Archaea-dominated hypersaline Lake Tyrrell, Victoria, Australia. Archaea (Vancouver, B.C.). 2013: 370871. PMID 23853523 DOI: 10.1155/2013/370871  0.329
2013 Fischer CR, Bowen BP, Pan C, Northen TR, Banfield JF. Stable-isotope probing reveals that hydrogen isotope fractionation in proteins and lipids in a microbial community are different and species-specific. Acs Chemical Biology. 8: 1755-63. PMID 23713674 DOI: 10.1021/Cb400210Q  0.347
2013 Yelton AP, Williams KH, Fournelle J, Wrighton KC, Handley KM, Banfield JF. Vanadate and acetate biostimulation of contaminated sediments decreases diversity, selects for specific taxa, and decreases aqueous V5+ concentration. Environmental Science & Technology. 47: 6500-9. PMID 23713472 DOI: 10.1021/Es4006674  0.787
2013 Goltsman DS, Dasari M, Thomas BC, Shah MB, VerBerkmoes NC, Hettich RL, Banfield JF. New group in the Leptospirillum clade: cultivation-independent community genomics, proteomics, and transcriptomics of the new species "Leptospirillum group IV UBA BS". Applied and Environmental Microbiology. 79: 5384-93. PMID 23645189 DOI: 10.1128/Aem.00202-13  0.807
2013 Podell S, Ugalde JA, Narasingarao P, Banfield JF, Heidelberg KB, Allen EE. Assembly-driven community genomics of a hypersaline microbial ecosystem. Plos One. 8: e61692. PMID 23637883 DOI: 10.1371/Journal.Pone.0061692  0.45
2013 Moreau JW, Fournelle JH, Banfield JF. Quantifying heavy metals sequestration by sulfate-reducing bacteria in an Acid mine drainage-contaminated natural wetland. Frontiers in Microbiology. 4: 43. PMID 23487496 DOI: 10.3389/Fmicb.2013.00043  0.652
2013 Mosier AC, Justice NB, Bowen BP, Baran R, Thomas BC, Northen TR, Banfield JF. Metabolites associated with adaptation of microorganisms to an acidophilic, metal-rich environment identified by stable-isotope-enabled metabolomics. Mbio. 4: e00484-12. PMID 23481603 DOI: 10.1128/Mbio.00484-12  0.415
2013 Wilkins MJ, Wrighton KC, Nicora CD, Williams KH, McCue LA, Handley KM, Miller CS, Giloteaux L, Montgomery AP, Lovley DR, Banfield JF, Long PE, Lipton MS. Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface. Plos One. 8: e57819. PMID 23472107 DOI: 10.1371/Journal.Pone.0057819  0.348
2013 Schönknecht G, Chen WH, Ternes CM, Barbier GG, Shrestha RP, Stanke M, Bräutigam A, Baker BJ, Banfield JF, Garavito RM, Carr K, Wilkerson C, Rensing SA, Gagneul D, Dickenson NE, et al. Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote. Science (New York, N.Y.). 339: 1207-10. PMID 23471408 DOI: 10.1126/Science.1231707  0.638
2013 Miller CS, Handley KM, Wrighton KC, Frischkorn KR, Thomas BC, Banfield JF. Short-read assembly of full-length 16S amplicons reveals bacterial diversity in subsurface sediments. Plos One. 8: e56018. PMID 23405248 DOI: 10.1371/Journal.Pone.0056018  0.413
2013 Paez-Espino D, Morovic W, Sun CL, Thomas BC, Ueda K, Stahl B, Barrangou R, Banfield JF. Strong bias in the bacterial CRISPR elements that confer immunity to phage. Nature Communications. 4: 1430. PMID 23385575 DOI: 10.1038/Ncomms2440  0.345
2013 Handley KM, VerBerkmoes NC, Steefel CI, Williams KH, Sharon I, Miller CS, Frischkorn KR, Chourey K, Thomas BC, Shah MB, Long PE, Hettich RL, Banfield JF. Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community. The Isme Journal. 7: 800-16. PMID 23190730 DOI: 10.1038/Ismej.2012.148  0.408
2013 Sun CL, Barrangou R, Thomas BC, Horvath P, Fremaux C, Banfield JF. Phage mutations in response to CRISPR diversification in a bacterial population. Environmental Microbiology. 15: 463-70. PMID 23057534 DOI: 10.1111/J.1462-2920.2012.02879.X  0.319
2013 Luef B, Fakra SC, Csencsits R, Wrighton KC, Williams KH, Wilkins MJ, Downing KH, Long PE, Comolli LR, Banfield JF. Iron-reducing bacteria accumulate ferric oxyhydroxide nanoparticle aggregates that may support planktonic growth. The Isme Journal. 7: 338-50. PMID 23038172 DOI: 10.1038/Ismej.2012.103  0.345
2013 Sharon I, Morowitz MJ, Thomas BC, Costello EK, Relman DA, Banfield JF. Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization. Genome Research. 23: 111-20. PMID 22936250 DOI: 10.1101/Gr.142315.112  0.4
2012 Knierim B, Luef B, Wilmes P, Webb RI, Auer M, Comolli LR, Banfield JF. Correlative microscopy for phylogenetic and ultrastructural characterization of microbial communities. Environmental Microbiology Reports. 4: 36-41. PMID 23757227 DOI: 10.1111/J.1758-2229.2011.00275.X  0.348
2012 Wrighton KC, Thomas BC, Sharon I, Miller CS, Castelle CJ, VerBerkmoes NC, Wilkins MJ, Hettich RL, Lipton MS, Williams KH, Long PE, Banfield JF. Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla. Science (New York, N.Y.). 337: 1661-5. PMID 23019650 DOI: 10.1126/Science.1224041  0.394
2012 Justice NB, Pan C, Mueller R, Spaulding SE, Shah V, Sun CL, Yelton AP, Miller CS, Thomas BC, Shah M, VerBerkmoes N, Hettich R, Banfield JF. Heterotrophic archaea contribute to carbon cycling in low-pH, suboxic biofilm communities. Applied and Environmental Microbiology. 78: 8321-30. PMID 23001646 DOI: 10.1128/Aem.01938-12  0.807
2012 Cruz-Martínez K, Rosling A, Zhang Y, Song M, Andersen GL, Banfield JF. Effect of rainfall-induced soil geochemistry dynamics on grassland soil microbial communities. Applied and Environmental Microbiology. 78: 7587-95. PMID 22904056 DOI: 10.1128/Aem.00203-12  0.322
2012 Emerson JB, Thomas BC, Andrade K, Allen EE, Heidelberg KB, Banfield JF. Dynamic viral populations in hypersaline systems as revealed by metagenomic assembly. Applied and Environmental Microbiology. 78: 6309-20. PMID 22773627 DOI: 10.1128/Aem.01212-12  0.347
2012 Zhu M, Legg B, Zhang H, Gilbert B, Ren Y, Banfield JF, Waychunas GA. Early stage formation of iron oxyhydroxides during neutralization of simulated acid mine drainage solutions. Environmental Science & Technology. 46: 8140-7. PMID 22765054 DOI: 10.1021/Es301268G  0.783
2012 Schmidt MC, Rocha AM, Padmanabhan K, Shpanskaya Y, Banfield J, Scott K, Mihelcic JR, Samatova NF. NIBBS-search for fast and accurate prediction of phenotype-biased metabolic systems. Plos Computational Biology. 8: e1002490. PMID 22589706 DOI: 10.1371/Journal.Pcbi.1002490  0.317
2012 Denef VJ, Banfield JF. In situ evolutionary rate measurements show ecological success of recently emerged bacterial hybrids. Science (New York, N.Y.). 336: 462-6. PMID 22539719 DOI: 10.1126/Science.1218389  0.371
2012 Weinberger AD, Sun CL, PluciÅ„ski MM, Denef VJ, Thomas BC, Horvath P, Barrangou R, Gilmore MS, Getz WM, Banfield JF. Persisting viral sequences shape microbial CRISPR-based immunity. Plos Computational Biology. 8: e1002475. PMID 22532794 DOI: 10.1371/Journal.Pcbi.1002475  0.362
2012 Handley KM, Wrighton KC, Piceno YM, Andersen GL, DeSantis TZ, Williams KH, Wilkins MJ, N'Guessan AL, Peacock A, Bargar J, Long PE, Banfield JF. High-density PhyloChip profiling of stimulated aquifer microbial communities reveals a complex response to acetate amendment. Fems Microbiology Ecology. 81: 188-204. PMID 22432531 DOI: 10.1111/J.1574-6941.2012.01363.X  0.358
2012 Singer DM, Chatman SM, Ilton ES, Rosso KM, Banfield JF, Waychunas GA. U(VI) sorption and reduction kinetics on the magnetite (111) surface. Environmental Science & Technology. 46: 3821-30. PMID 22394451 DOI: 10.1021/Es203878C  0.733
2012 Singer DM, Chatman SM, Ilton ES, Rosso KM, Banfield JF, Waychunas GA. Identification of simultaneous U(VI) sorption complexes and U(IV) nanoprecipitates on the magnetite (111) surface. Environmental Science & Technology. 46: 3811-20. PMID 22364181 DOI: 10.1021/Es203877X  0.725
2012 Narasingarao P, Podell S, Ugalde JA, Brochier-Armanet C, Emerson JB, Brocks JJ, Heidelberg KB, Banfield JF, Allen EE. De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities. The Isme Journal. 6: 81-93. PMID 21716304 DOI: 10.1038/Ismej.2011.78  0.436
2012 Fischer CR, Wilmes P, Bowen BP, Northen TR, Banfield JF. Deuterium-exchange metabolomics identifies N-methyl lyso phosphatidylethanolamines as abundant lipids in acidophilic mixed microbial communities Metabolomics. 8: 566-578. DOI: 10.1007/S11306-011-0344-X  0.339
2012 Berhe AA, Suttle KB, Burton SD, Banfield JF. Contingency in the direction and mechanics of soil organic matter responses to increased rainfall Plant and Soil. 358: 371-383. DOI: 10.1007/S11104-012-1156-0  0.588
2011 Yelton AP, Thomas BC, Simmons SL, Wilmes P, Zemla A, Thelen MP, Justice N, Banfield JF. A semi-quantitative, synteny-based method to improve functional predictions for hypothetical and poorly annotated bacterial and archaeal genes. Plos Computational Biology. 7: e1002230. PMID 22028637 DOI: 10.1371/Journal.Pcbi.1002230  0.808
2011 Fujishima K, Sugahara J, Miller CS, Baker BJ, Di Giulio M, Takesue K, Sato A, Tomita M, Banfield JF, Kanai A. A novel three-unit tRNA splicing endonuclease found in ultrasmall Archaea possesses broad substrate specificity. Nucleic Acids Research. 39: 9695-704. PMID 21880595 DOI: 10.1093/Nar/Gkr692  0.602
2011 Jiao Y, D'haeseleer P, Dill BD, Shah M, Verberkmoes NC, Hettich RL, Banfield JF, Thelen MP. Identification of biofilm matrix-associated proteins from an acid mine drainage microbial community. Applied and Environmental Microbiology. 77: 5230-7. PMID 21685158 DOI: 10.1128/Aem.03005-10  0.335
2011 Miller CS, Baker BJ, Thomas BC, Singer SW, Banfield JF. EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data. Genome Biology. 12: R44. PMID 21595876 DOI: 10.1186/Gb-2011-12-5-R44  0.625
2011 Mueller RS, Dill BD, Pan C, Belnap CP, Thomas BC, VerBerkmoes NC, Hettich RL, Banfield JF. Proteome changes in the initial bacterial colonist during ecological succession in an acid mine drainage biofilm community. Environmental Microbiology. 13: 2279-92. PMID 21518216 DOI: 10.1111/J.1462-2920.2011.02486.X  0.795
2011 Pan C, Fischer CR, Hyatt D, Bowen BP, Hettich RL, Banfield JF. Quantitative tracking of isotope flows in proteomes of microbial communities. Molecular & Cellular Proteomics : McP. 10: M110.006049. PMID 21285414 DOI: 10.1074/Mcp.M110.006049  0.359
2011 Belnap CP, Pan C, Denef VJ, Samatova NF, Hettich RL, Banfield JF. Quantitative proteomic analyses of the response of acidophilic microbial communities to different pH conditions. The Isme Journal. 5: 1152-61. PMID 21228889 DOI: 10.1038/Ismej.2010.200  0.8
2011 Morowitz MJ, Denef VJ, Costello EK, Thomas BC, Poroyko V, Relman DA, Banfield JF. Strain-resolved community genomic analysis of gut microbial colonization in a premature infant. Proceedings of the National Academy of Sciences of the United States of America. 108: 1128-33. PMID 21191099 DOI: 10.1073/Pnas.1010992108  0.37
2011 Pride DT, Sun CL, Salzman J, Rao N, Loomer P, Armitage GC, Banfield JF, Relman DA. Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time. Genome Research. 21: 126-36. PMID 21149389 DOI: 10.1101/Gr.111732.110  0.344
2011 Morowitz MJ, Denef VJ, Costello EK, Thomas BC, Poroyko V, Relman DA, Banfield JF. Strain-resolved community genomic analysis of gut microbial colonization in a premature infant (Proceedings of the National Academy of Sciences of the United States of America (2011) 108, 3 (1128-1133) DOI: 10.1073/pnas.1010992108) Proceedings of the National Academy of Sciences of the United States of America. 108: 4512. DOI: 10.1073/Pnas.1102689108  0.319
2011 Zhang H, Bayne M, Fernando S, Legg B, Zhu M, Penn RL, Banfield JF. Size-dependent bandgap of nanogoethite Journal of Physical Chemistry C. 115: 17704-17710. DOI: 10.1021/Jp205192A  0.764
2011 Ma S, Banfield JF. Micron-scale Fe 2+/Fe 3+, intermediate sulfur species and O 2 gradients across the biofilm-solution-sediment interface control biofilm organization Geochimica Et Cosmochimica Acta. 75: 3568-3580. DOI: 10.1016/J.Gca.2011.03.035  0.353
2010 Callister SJ, Wilkins MJ, Nicora CD, Williams KH, Banfield JF, VerBerkmoes NC, Hettich RL, N'Guessan L, Mouser PJ, Elifantz H, Smith RD, Lovley DR, Lipton MS, Long PE. Analysis of biostimulated microbial communities from two field experiments reveals temporal and spatial differences in proteome profiles. Environmental Science & Technology. 44: 8897-903. PMID 21058662 DOI: 10.1021/Es101029F  0.387
2010 Wilmes P, Bowen BP, Thomas BC, Mueller RS, Denef VJ, VerBerkmoes NC, Hettich RL, Northen TR, Banfield JF. Metabolome-proteome differentiation coupled to microbial divergence. Mbio. 1. PMID 20978538 DOI: 10.1128/Mbio.00246-10  0.37
2010 Mueller RS, Denef VJ, Kalnejais LH, Suttle KB, Thomas BC, Wilmes P, Smith RL, Nordstrom DK, McCleskey RB, Shah MB, Verberkmoes NC, Hettich RL, Banfield JF. Ecological distribution and population physiology defined by proteomics in a natural microbial community. Molecular Systems Biology. 6: 374. PMID 20531404 DOI: 10.1038/Msb.2010.30  0.384
2010 Singer SW, Erickson BK, VerBerkmoes NC, Hwang M, Shah MB, Hettich RL, Banfield JF, Thelen MP. Posttranslational modification and sequence variation of redox-active proteins correlate with biofilm life cycle in natural microbial communities. The Isme Journal. 4: 1398-409. PMID 20485387 DOI: 10.1038/Ismej.2010.64  0.388
2010 Moreau JW, Zierenberg RA, Banfield JF. Diversity of dissimilatory sulfite reductase genes (dsrAB) in a salt marsh impacted by long-term acid mine drainage. Applied and Environmental Microbiology. 76: 4819-28. PMID 20472728 DOI: 10.1128/Aem.03006-09  0.696
2010 Baker BJ, Comolli LR, Dick GJ, Hauser LJ, Hyatt D, Dill BD, Land ML, Verberkmoes NC, Hettich RL, Banfield JF. Enigmatic, ultrasmall, uncultivated Archaea. Proceedings of the National Academy of Sciences of the United States of America. 107: 8806-11. PMID 20421484 DOI: 10.1073/Pnas.0914470107  0.744
2010 Jiao Y, Cody GD, Harding AK, Wilmes P, Schrenk M, Wheeler KE, Banfield JF, Thelen MP. Characterization of extracellular polymeric substances from acidophilic microbial biofilms. Applied and Environmental Microbiology. 76: 2916-22. PMID 20228116 DOI: 10.1128/Aem.02289-09  0.319
2010 Erickson BK, Mueller RS, VerBerkmoes NC, Shah M, Singer SW, Thelen MP, Banfield JF, Hettich RL. Computational prediction and experimental validation of signal peptide cleavages in the extracellular proteome of a natural microbial community. Journal of Proteome Research. 9: 2148-59. PMID 20218729 DOI: 10.1021/Pr900877A  0.321
2010 Denef VJ, Mueller RS, Banfield JF. AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature. The Isme Journal. 4: 599-610. PMID 20164865 DOI: 10.1038/Ismej.2009.158  0.383
2010 Denef VJ, Kalnejais LH, Mueller RS, Wilmes P, Baker BJ, Thomas BC, VerBerkmoes NC, Hettich RL, Banfield JF. Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities. Proceedings of the National Academy of Sciences of the United States of America. 107: 2383-90. PMID 20133593 DOI: 10.1073/Pnas.0907041107  0.651
2010 Belnap CP, Pan C, VerBerkmoes NC, Power ME, Samatova NF, Carver RL, Hettich RL, Banfield JF. Cultivation and quantitative proteomic analyses of acidophilic microbial communities. The Isme Journal. 4: 520-30. PMID 20033068 DOI: 10.1038/Ismej.2009.139  0.798
2009 Banfield JF, Young M. Microbiology. Variety--the splice of life--in microbial communities. Science (New York, N.Y.). 326: 1198-9. PMID 19965457 DOI: 10.1126/Science.1181501  0.385
2009 Williams KH, Kemna A, Wilkins MJ, Druhan J, Arntzen E, N'Guessan AL, Long PE, Hubbard SS, Banfield JF. Geophysical monitoring of coupled microbial and geochemical processes during stimulated subsurface bioremediation. Environmental Science & Technology. 43: 6717-23. PMID 19764240 DOI: 10.1021/Es900855J  0.306
2009 Dick GJ, Andersson AF, Baker BJ, Simmons SL, Thomas BC, Yelton AP, Banfield JF. Community-wide analysis of microbial genome sequence signatures. Genome Biology. 10: R85. PMID 19698104 DOI: 10.1186/Gb-2009-10-8-R85  0.814
2009 Brocks JJ, Banfield J. Unravelling ancient microbial history with community proteogenomics and lipid geochemistry. Nature Reviews. Microbiology. 7: 601-9. PMID 19609261 DOI: 10.1038/Nrmicro2167  0.361
2009 Goltsman DS, Denef VJ, Singer SW, VerBerkmoes NC, Lefsrud M, Mueller RS, Dick GJ, Sun CL, Wheeler KE, Zemla A, Baker BJ, Hauser L, Land M, Shah MB, Thelen MP, ... ... Banfield JF, et al. Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing "Leptospirillum rubarum" (Group II) and "Leptospirillum ferrodiazotrophum" (Group III) bacteria in acid mine drainage biofilms. Applied and Environmental Microbiology. 75: 4599-615. PMID 19429552 DOI: 10.1128/Aem.02943-08  0.807
2009 Cruz-Martínez K, Suttle KB, Brodie EL, Power ME, Andersen GL, Banfield JF. Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland. The Isme Journal. 3: 738-44. PMID 19279669 DOI: 10.1038/Ismej.2009.16  0.304
2009 VerBerkmoes NC, Denef VJ, Hettich RL, Banfield JF. Systems biology: Functional analysis of natural microbial consortia using community proteomics. Nature Reviews. Microbiology. 7: 196-205. PMID 19219053 DOI: 10.1038/Nrmicro2080  0.389
2009 Baker BJ, Tyson GW, Goosherst L, Banfield JF. Insights into the diversity of eukaryotes in acid mine drainage biofilm communities. Applied and Environmental Microbiology. 75: 2192-9. PMID 19201960 DOI: 10.1128/Aem.02500-08  0.755
2009 Wilmes P, Simmons SL, Denef VJ, Banfield JF. The dynamic genetic repertoire of microbial communities. Fems Microbiology Reviews. 33: 109-32. PMID 19054116 DOI: 10.1111/J.1574-6976.2008.00144.X  0.39
2009 Comolli LR, Baker BJ, Downing KH, Siegerist CE, Banfield JF. Three-dimensional analysis of the structure and ecology of a novel, ultra-small archaeon. The Isme Journal. 3: 159-67. PMID 18946497 DOI: 10.1038/Ismej.2008.99  0.65
2009 Wilmes P, Remis JP, Hwang M, Auer M, Thelen MP, Banfield JF. Natural acidophilic biofilm communities reflect distinct organismal and functional organization. The Isme Journal. 3: 266-70. PMID 18843299 DOI: 10.1038/Ismej.2008.90  0.388
2009 Denef VJ, VerBerkmoes NC, Shah MB, Abraham P, Lefsrud M, Hettich RL, Banfield JF. Proteomics-inferred genome typing (PIGT) demonstrates inter-population recombination as a strategy for environmental adaptation. Environmental Microbiology. 11: 313-25. PMID 18826438 DOI: 10.1111/J.1462-2920.2008.01769.X  0.432
2009 Chan CS, Fakra SC, Edwards DC, Emerson D, Banfield JF. Iron oxyhydroxide mineralization on microbial extracellular polysaccharides Geochimica Et Cosmochimica Acta. 73: 3807-3818. DOI: 10.1016/J.Gca.2009.02.036  0.57
2008 Simmons SL, Dibartolo G, Denef VJ, Goltsman DS, Thelen MP, Banfield JF. Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation. Plos Biology. 6: e177. PMID 18651792 DOI: 10.1371/Journal.Pbio.0060177  0.808
2008 Andersson AF, Banfield JF. Virus population dynamics and acquired virus resistance in natural microbial communities. Science (New York, N.Y.). 320: 1047-50. PMID 18497291 DOI: 10.1126/Science.1157358  0.356
2008 Singer SW, Chan CS, Zemla A, VerBerkmoes NC, Hwang M, Hettich RL, Banfield JF, Thelen MP. Characterization of cytochrome 579, an unusual cytochrome isolated from an iron-oxidizing microbial community. Applied and Environmental Microbiology. 74: 4454-62. PMID 18469132 DOI: 10.1128/Aem.02799-07  0.613
2008 Jeans C, Singer SW, Chan CS, Verberkmoes NC, Shah M, Hettich RL, Banfield JF, Thelen MP. Cytochrome 572 is a conspicuous membrane protein with iron oxidation activity purified directly from a natural acidophilic microbial community. The Isme Journal. 2: 542-50. PMID 18463612 DOI: 10.1038/Ismej.2008.17  0.609
2008 Wilmes P, Andersson AF, Lefsrud MG, Wexler M, Shah M, Zhang B, Hettich RL, Bond PL, VerBerkmoes NC, Banfield JF. Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal. The Isme Journal. 2: 853-64. PMID 18449217 DOI: 10.1038/Ismej.2008.38  0.395
2008 Tyson GW, Banfield JF. Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses. Environmental Microbiology. 10: 200-7. PMID 17894817 DOI: 10.1111/J.1462-2920.2007.01444.X  0.624
2008 Cervini-Silva J, Gilbert B, Fakra S, Friedlich S, Banfield J. Coupled redox transformations of catechol and cerium at the surface of a cerium(III) phosphate mineral Geochimica Et Cosmochimica Acta. 72: 2454-2464. DOI: 10.1016/J.Gca.2008.02.017  0.333
2007 Eppley JM, Tyson GW, Getz WM, Banfield JF. Strainer: software for analysis of population variation in community genomic datasets. Bmc Bioinformatics. 8: 398. PMID 17941997 DOI: 10.1186/1471-2105-8-398  0.617
2007 Eppley JM, Tyson GW, Getz WM, Banfield JF. Genetic exchange across a species boundary in the archaeal genus ferroplasma. Genetics. 177: 407-16. PMID 17603112 DOI: 10.1534/Genetics.107.072892  0.583
2007 Denef VJ, Shah MB, Verberkmoes NC, Hettich RL, Banfield JF. Implications of strain- and species-level sequence divergence for community and isolate shotgun proteomic analysis. Journal of Proteome Research. 6: 3152-61. PMID 17602579 DOI: 10.1021/Pr0701005  0.368
2007 Moreau JW, Weber PK, Martin MC, Gilbert B, Hutcheon ID, Banfield JF. Extracellular proteins limit the dispersal of biogenic nanoparticles. Science (New York, N.Y.). 316: 1600-3. PMID 17569859 DOI: 10.1126/Science.1141064  0.665
2007 Lo I, Denef VJ, Verberkmoes NC, Shah MB, Goltsman D, DiBartolo G, Tyson GW, Allen EE, Ram RJ, Detter JC, Richardson P, Thelen MP, Hettich RL, Banfield JF. Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria. Nature. 446: 537-41. PMID 17344860 DOI: 10.1038/Nature05624  0.821
2007 Allen EE, Tyson GW, Whitaker RJ, Detter JC, Richardson PM, Banfield JF. Genome dynamics in a natural archaeal population. Proceedings of the National Academy of Sciences of the United States of America. 104: 1883-8. PMID 17267615 DOI: 10.1073/Pnas.0604851104  0.618
2007 Rosling A, Suttle KB, Johansson E, Van Hees PAW, Banfield JF. Phosphorous availability influences the dissolution of apatite by soil fungi Geobiology. 5: 265-280. DOI: 10.1111/J.1472-4669.2007.00107.X  0.308
2006 Baker BJ, Tyson GW, Webb RI, Flanagan J, Hugenholtz P, Allen EE, Banfield JF. Lineages of acidophilic archaea revealed by community genomic analysis. Science (New York, N.Y.). 314: 1933-5. PMID 17185602 DOI: 10.1126/Science.1132690  0.746
2006 Whitaker RJ, Banfield JF. Population genomics in natural microbial communities. Trends in Ecology & Evolution. 21: 508-16. PMID 16859806 DOI: 10.1016/J.Tree.2006.07.001  0.415
2006 Moreau J, Weber P, Martin M, Webb R, Gilbert B, Hutcheon I, Banfield J. Submicron-scale isotopic variations within biogenic ZnS record the mechanism and kinetics of extracellular metal-sulfide biomineralization Geochimica Et Cosmochimica Acta. 70: A428. DOI: 10.1016/J.Gca.2006.06.861  0.637
2006 Jones CM, Allen EE, Giska JR, Welch SA, Kirste D, Banfield JF. Iron formations at Lake Tyrrell, Victoria, Australia: Microbially-mediated redox chemistry Geochimica Et Cosmochimica Acta. 70: A297. DOI: 10.1016/J.Gca.2006.06.603  0.537
2006 Green EG, Dietrich WE, Banfield JF. Quantification of chemical weathering rates across an actively eroding hillslope Earth and Planetary Science Letters. 242: 155-169. DOI: 10.1016/J.Epsl.2005.11.039  0.716
2005 Banfield JF, Verberkmoes NC, Hettich RL, Thelen MP. Proteogenomic approaches for the molecular characterization of natural microbial communities Omics a Journal of Integrative Biology. 9: 301-333. PMID 16402891 DOI: 10.1089/Omi.2005.9.301  0.454
2005 Williams KH, Ntarlagiannis D, Slater LD, Dohnalkova A, Hubbard SS, Banfield JF. Geophysical imaging of stimulated microbial biomineralization Environmental Science and Technology. 39: 7592-7600. PMID 16245832 DOI: 10.1021/Es0504035  0.327
2005 Tyson GW, Lo I, Baker BJ, Allen EE, Hugenholtz P, Banfield JF. Genome-directed isolation of the key nitrogen fixer Leptospirillum ferrodiazotrophum sp. nov. from an acidophilic microbial community. Applied and Environmental Microbiology. 71: 6319-24. PMID 16204553 DOI: 10.1128/Aem.71.10.6319-6324.2005  0.743
2005 Tyson GW, Banfield JF. Cultivating the uncultivated: a community genomics perspective. Trends in Microbiology. 13: 411-5. PMID 16043355 DOI: 10.1016/J.Tim.2005.07.003  0.644
2005 Allen EE, Banfield JF. Community genomics in microbial ecology and evolution. Nature Reviews. Microbiology. 3: 489-98. PMID 15931167 DOI: 10.1038/Nrmicro1157  0.426
2005 Ram RJ, Verberkmoes NC, Thelen MP, Tyson GW, Baker BJ, Blake RC, Shah M, Hettich RL, Banfield JF. Community proteomics of a natural microbial biofilm. Science (New York, N.Y.). 308: 1915-20. PMID 15879173 DOI: 10.1126/Science.  0.736
2005 Suzuki Y, Kelly SD, Kemner KM, Banfield JF. Direct microbial reduction and subsequent preservation of uranium in natural near-surface sediment. Applied and Environmental Microbiology. 71: 1790-7. PMID 15812002 DOI: 10.1128/Aem.71.4.1790-1797.2005  0.565
2005 Cervini-Silva J, Fowle DA, Banfield J. Biogenic dissolution of a soil cerium-phosphate mineral American Journal of Science. 305: 711-726. DOI: 10.2475/Ajs.305.6-8.711  0.319
2005 Gilbert B, Banfield JF. Molecular-scale processes involving nanoparticulate minerals in biogeochemical systems Reviews in Mineralogy and Geochemistry. 59: 109-155. DOI: 10.2138/Rmg.2005.59.6  0.314
2005 Whitaker RJ, Banfield JF. Population dynamics through the lens of extreme environments Reviews in Mineralogy and Geochemistry. 59: 259-277. DOI: 10.2138/Rmg.2005.59.11  0.306
2005 Banfield JF, Tyson GW, Allen EE, Whitaker RJ. The search for a molecular-level understanding of the processes that underpin the Earth's biogeochemical cycles Reviews in Mineralogy and Geochemistry. 59: 1-7. DOI: 10.2138/Rmg.2005.59.1  0.636
2005 Waychunas GA, Kim CS, Banfield JF. Nanoparticulate iron oxide minerals in soils and sediments: Unique properties and contaminant scavenging mechanisms Journal of Nanoparticle Research. 7: 409-433. DOI: 10.1007/S11051-005-6931-X  0.34
2004 Druschel GK, Baker BJ, Gihring TM, Banfield JF. Acid mine drainage biogeochemistry at Iron Mountain, California. Geochemical Transactions. 5: 13. PMID 35412773 DOI: 10.1186/1467-4866-5-13  0.761
2004 Druschel GK, Baker BJ, Gihring TM, Banfield JF. Acid mine drainage biogeochemistry at Iron Mountain, California. Geochemical Transactions. 5: 13. PMID 35412773 DOI: 10.1186/1467-4866-5-13  0.761
2004 Baker BJ, Lutz MA, Dawson SC, Bond PL, Banfield JF. Metabolically active eukaryotic communities in extremely acidic mine drainage. Applied and Environmental Microbiology. 70: 6264-71. PMID 15466574 DOI: 10.1128/Aem.70.10.6264-6271.2004  0.661
2004 Gilbert B, Zhang H, Huang F, Banfield JF, Ren Y, Haskel D, Lang JC, Srajer G, Jürgensen A, Waychunas GA. Analysis and simulation of the structure of nanoparticles that undergo a surface-driven structural transformation. The Journal of Chemical Physics. 120: 11785-95. PMID 15268213 DOI: 10.1063/1.1752890  0.717
2004 Macalady JL, Vestling MM, Baumler D, Boekelheide N, Kaspar CW, Banfield JF. Tetraether-linked membrane monolayers in Ferroplasma spp: a key to survival in acid. Extremophiles : Life Under Extreme Conditions. 8: 411-9. PMID 15258835 DOI: 10.1007/S00792-004-0404-5  0.637
2004 Gilbert B, Huang F, Zhang H, Waychunas GA, Banfield JF. Nanoparticles: strained and stiff. Science (New York, N.Y.). 305: 651-4. PMID 15232073 DOI: 10.1126/science.1098454  0.698
2004 Chan CS, De Stasio G, Welch SA, Girasole M, Frazer BH, Nesterova MV, Fakra S, Banfield JF. Microbial polysaccharides template assembly of nanocrystal fibers. Science (New York, N.Y.). 303: 1656-8. PMID 15016997 DOI: 10.1126/Science.1092098  0.57
2004 Labrenz M, Banfield JF. Sulfate-reducing bacteria-dominated biofilms that precipitate ZnS in a subsurface circumneutral-pH mine drainage system Microbial Ecology. 47: 205-217. PMID 14994175 DOI: 10.1007/S00248-003-1025-8  0.369
2004 Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM, Solovyev VV, Rubin EM, Rokhsar DS, Banfield JF. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature. 428: 37-43. PMID 14961025 DOI: 10.1038/Nature02340  0.648
2004 Moreau JW, Webb RI, Banfield JF. Ultrastructure, aggregation-state, and crystal growth of biogenic nanocrystalline sphalerite and wurtzite American Mineralogist. 89: 950-960. DOI: 10.2138/Am-2004-0704  0.692
2004 Suzuki Y, Kelly SD, Kemner KM, Banfield JF. Enzymatic U(VI) reduction by Desulfosporosinus species Radiochimica Acta. 92: 11-16. DOI: 10.1524/Ract.92.1.11.25404  0.49
2004 Suzuki Y, Banfield JF. Resistance to, and accumulation of, uranium by bacteria from a uranium-contaminated site Geomicrobiology Journal. 21: 113-121. DOI: 10.1080/01490450490266361  0.51
2004 Bishop JL, Darby Dyar M, Lane MD, Banfield JF. Spectral identification of hydrated sulfates on Mars and comparison with acidic environments on Earth International Journal of Astrobiology. 3: 275-285. DOI: 10.1017/S1473550405002259  0.334
2003 Gilbert B, Zhang H, Huang F, Finnegan MP, Waychunas GA, Banfield JF. Special phase transformation and crystal growth pathways observed in nanoparticles†. Geochemical Transactions. 4: 20. PMID 35412776 DOI: 10.1186/1467-4866-4-20  0.713
2003 Gilbert B, Zhang H, Huang F, Finnegan MP, Waychunas GA, Banfield JF. Special phase transformation and crystal growth pathways observed in nanoparticles†. Geochemical Transactions. 4: 20. PMID 35412776 DOI: 10.1186/1467-4866-4-20  0.713
2003 Baker BJ, Banfield JF. Microbial communities in acid mine drainage. Fems Microbiology Ecology. 44: 139-52. PMID 19719632 DOI: 10.1016/S0168-6496(03)00028-X  0.654
2003 Baker BJ, Hugenholtz P, Dawson SC, Banfield JF. Extremely acidophilic protists from acid mine drainage host Rickettsiales-lineage endosymbionts that have intervening sequences in their 16S rRNA genes. Applied and Environmental Microbiology. 69: 5512-8. PMID 12957940 DOI: 10.1128/Aem.69.9.5512-5518.2003  0.641
2003 Gihring TM, Bond PL, Peters SC, Banfield JF. Arsenic resistance in the archaeon "Ferroplasma acidarmanus": new insights into the structure and evolution of the ars genes. Extremophiles : Life Under Extreme Conditions. 7: 123-30. PMID 12664264 DOI: 10.1007/S00792-002-0303-6  0.313
2003 Suzuki Y, Kelly SD, Kemner KM, Banfield JF. Microbial populations stimulated for hexavalent uranium reduction in uranium mine sediment. Applied and Environmental Microbiology. 69: 1337-46. PMID 12620814 DOI: 10.1128/Aem.69.3.1337-1346.2003  0.544
2003 Crocetti GR, Banfield JF, Keller J, Bond PL, Blackall LL. Glycogen-accumulating organisms in laboratory-scale and full-scale wastewater treatment processes. Microbiology (Reading, England). 148: 3353-3364. PMID 12427927 DOI: 10.1099/00221287-148-11-3353  0.304
2003 Druschel GK, Hamers RJ, Luther GW, Banfield JF. Kinetics and mechanism of trithionate and tetrathionate oxidation at low pH by hydroxyl radicals Aquatic Geochemistry. 9: 145-164. DOI: 10.1023/B:Aqua.0000019495.91752.D7  0.636
2003 Druschel GK, Hamers RJ, Banfield JF. Kinetics and mechanism of polythionate oxidation to sulfate at low pH by O2 and Fe3+ Geochimica Et Cosmochimica Acta. 67: 4457-4469. DOI: 10.1016/S0016-7037(03)00388-0  0.631
2003 Nesterova M, Moreau J, Banfield JF. Model biomimetic studies of templated growth and assembly of nanocrystalline FeOOH Geochimica Et Cosmochimica Acta. 67: 1185-1195. DOI: 10.1016/S0016-7037(02)01180-8  0.683
2003 Macalady J, Banfield JF. Erratum to “Molecular geomicrobiology: genes and geochemical cycling” Earth and Planetary Science Letters. 212: 253. DOI: 10.1016/S0012-821X(03)00236-X  0.619
2003 Macalady J, Banfield JF. Molecular geomicrobiology: genes and geochemical cycling Earth and Planetary Science Letters. 209: 1-17. DOI: 10.1016/S0012-821X(02)01010-5  0.682
2002 Suzuki Y, Kelly SD, Kemner KM, Banfield JF. Nanometre-size products of uranium bioreduction. Nature. 419: 134. PMID 12226656 DOI: 10.1038/419134A  0.526
2002 Newman DK, Banfield JF. Geomicrobiology: how molecular-scale interactions underpin biogeochemical systems. Science (New York, N.Y.). 296: 1071-7. PMID 12004119 DOI: 10.1126/Science.1010716  0.41
2002 Druschel GK, Labrenz M, Thomsen-Ebert T, Fowle DA, Banfield JF. Geochemical modeling of ZnS in biofilms: An example of ore depositional processes Economic Geology. 97: 1319-1329. DOI: 10.2113/Gsecongeo.97.6.1319  0.654
2002 Welch SA, Taunton AE, Banfield JF. Effect of microorganisms and microbial metabolites on apatite dissolution Geomicrobiology Journal. 19: 343-367. DOI: 10.1080/01490450290098414  0.308
2002 Welch SA, Banfield JF. Modification of olivine surface morphology and reactivity by microbial activity during chemical weathering Geochimica Et Cosmochimica Acta. 66: 213-221. DOI: 10.1016/S0016-7037(01)00771-2  0.304
2001 Banfield JF, Moreau JW, Chan CS, Welch SA, Little B. Mineralogical biosignatures and the search for life on Mars. Astrobiology. 1: 447-65. PMID 12448978 DOI: 10.1089/153110701753593856  0.741
2001 Gihring TM, Druschel GK, McCleskey RB, Hamers RJ, Banfield JF. Rapid arsenite oxidation by Thermus aquaticus and Thermus thermophilus: field and laboratory investigations. Environmental Science & Technology. 35: 3857-62. PMID 11642444 DOI: 10.1021/Es010816F  0.634
2001 Edwards KJ, Hu B, Hamers RJ, Banfield JF. A new look at microbial leaching patterns on sulfide minerals. Fems Microbiology Ecology. 34: 197-206. PMID 11137599 DOI: 10.1111/J.1574-6941.2001.Tb00770.X  0.303
2001 Banfield JF, Navrotsky A. Nanoparticles and the Environment - An Introduction Reviews in Mineralogy and Geochemistry. 44: v-vii. DOI: 10.2138/Rmg.2001.44.0  0.306
2001 McGuire MM, Banfield JF, Hamers RJ. Quantitative determination of elemental sulfur at the arsenopyrite surface after oxidation by ferric iron: Mechanistic implications Geochemical Transactions. 2: 25-29. DOI: 10.1186/1467-4866-2-25  0.31
2001 McGuire MM, Edwards KJ, Banfield JF, Hamers RJ. Kinetics, surface chemistry, and structural evolution of microbially mediated sulfide mineral dissolution Geochimica Et Cosmochimica Acta. 65: 1243-1258. DOI: 10.1016/S0016-7037(00)00601-3  0.321
2001 Santelli CM, Welch SA, Westrich HR, Banfield JF. The effect of Fe-oxidizing bacteria on Fe-silicate mineral dissolution Chemical Geology. 180: 99-115. DOI: 10.1016/S0009-2541(01)00308-4  0.314
2000 Labrenz M, Druschel GK, Thomsen-Ebert T, Gilbert B, Welch SA, Kemner KM, Logan GA, Summons RE, De Stasio G, Bond PL, Lai B, Kelly SD, Banfield JF. Formation of sphalerite (ZnS) deposits in natural biofilms of sulfate-reducing bacteria. Science (New York, N.Y.). 290: 1744-7. PMID 11099408 DOI: 10.1126/Science.290.5497.1744  0.652
2000 Bond PL, Druschel GK, Banfield JF. Comparison of acid mine drainage microbial communities in physically and geochemically distinct ecosystems. Applied and Environmental Microbiology. 66: 4962-71. PMID 11055950 DOI: 10.1128/Aem.66.11.4962-4971.2000  0.692
2000 Bond PL, Smriga SP, Banfield JF. Phylogeny of microorganisms populating a thick, subaerial, predominantly lithotrophic biofilm at an extreme acid mine drainage site. Applied and Environmental Microbiology. 66: 3842-9. PMID 10966399 DOI: 10.1128/Aem.66.9.3842-3849.2000  0.394
2000 Banfield JF, Welch SA, Zhang H, Ebert TT, Penn RL. Aggregation-based crystal growth and microstructure development in natural iron oxyhydroxide biomineralization products. Science (New York, N.Y.). 289: 751-4. PMID 10926531 DOI: 10.1126/Science.289.5480.751  0.66
2000 Banfield JF, Marshall CR. Genomics and the geosciences Science. 287: 605-606. PMID 10691543 DOI: 10.1126/Science.287.5453.605  0.355
2000 Taunton AE, Welch SA, Banfield JF. Geomicrobiological controls on light rare earth element, Y and Ba distributions during granite weathering and soil formation Journal of Alloys and Compounds. 303: 30-36. DOI: 10.1016/S0925-8388(00)00597-1  0.316
2000 Edwards KJ, Bond PL, Druschel GK, McGuire MM, Hamers RJ, Banfield JF. Geochemical and biological aspects of sulfide mineral dissolution: Lessons from Iron Mountain, California Chemical Geology. 169: 383-397. DOI: 10.1016/S0009-2541(00)00216-3  0.67
2000 Taunton AE, Welch SA, Banfield JF. Microbial controls on phosphate and lanthanide distributions during granite weathering and soil formation Chemical Geology. 169: 371-382. DOI: 10.1016/S0009-2541(00)00215-1  0.309
1999 Edwards KJ, Gihring TM, Banfield JF. Seasonal variations in microbial populations and environmental conditions in an extreme acid mine drainage environment Applied and Environmental Microbiology. 65: 3627-3632. PMID 10427059 DOI: 10.1128/Aem.65.8.3627-3632.1999  0.314
1999 Banfield JF, Barker WW, Welch SA, Taunton A. Biological impact on mineral dissolution: application of the lichen model to understanding mineral weathering in the rhizosphere. Proceedings of the National Academy of Sciences of the United States of America. 96: 3404-11. PMID 10097050 DOI: 10.1073/Pnas.96.7.3404  0.349
1999 Penn RL, Banfield JF. Formation of rutile nuclei at anatase (112) twin interfaces and the phase transformation mechanism in nanocrystalline titania American Mineralogist. 84: 871-876. DOI: 10.2138/Am-1999-5-621  0.641
1999 Penn RL, Banfield JF, Kerrick DM. TEM investigation of Lewiston, Idaho, fibrolite; microstructure and grain boundary energetics American Mineralogist. 84: 152-159. DOI: 10.2138/Am-1999-1-217  0.603
1999 Edwards KJ, Goebel BM, Rodgers TM, Schrenk MO, Gihring TM, Cardona MM, Hu B, McGuire MM, Hamers RJ, Pace NR, Banfield JF. Geomicrobiology of pyrite (FeS2) dissolution: Case study at Iron Mountain, California Geomicrobiology Journal. 16: 155-179. DOI: 10.1080/014904599270668  0.334
1999 Zhang H, Penn RL, Hamers RJ, Banfield JF. Enhanced Adsorption of Molecules on Surfaces of Nanocrystalline Particles The Journal of Physical Chemistry B. 103: 4656-4662. DOI: 10.1021/jp984574q  0.577
1999 Zhang H, Penn RL, Hamers RJ, Banfield JF. Enhanced adsorption of molecules on surfaces of nanocrystalline particles Journal of Physical Chemistry B. 103: 4656-4662. DOI: 10.1021/Jp984574Q  0.627
1999 Penn RL, Banfield JF. Morphology development and crystal growth in nanocrystalline aggregates under hydrothermal conditions: Insights from titania Geochimica Et Cosmochimica Acta. 63: 1549-1557. DOI: 10.1016/S0016-7037(99)00037-X  0.654
1998 Penn RL, Banfield JF. Imperfect oriented attachment: dislocation generation in defect-free nanocrystals Science (New York, N.Y.). 281: 969-71. PMID 9703506 DOI: 10.1126/Science.281.5379.969  0.628
1998 Schrenk MO, Edwards KJ, Goodman RM, Hamers RJ, Banfield JF. Distribution of thiobacillus ferrooxidans and leptospirillum ferrooxidans: implications for generation of acid mine drainage Science (New York, N.Y.). 279: 1519-22. PMID 9488647 DOI: 10.1126/Science.279.5356.1519  0.322
1998 Penn RL, Banfield JF. Oriented attachment and growth, twinning, polytypism, and formation of metastable phases; insights from nanocrystalline TiO2 American Mineralogist. 83: 1077-1082. DOI: 10.2138/Am-1998-9-1016  0.647
1998 Barker WW, Welch SA, Chu S, Banfield JF. Experimental observations of the effects of bacteria on aluminosilicate weathering American Mineralogist. 83: 1551-1563. DOI: 10.2138/Am-1998-11-1243  0.341
1998 Edwards KJ, Schrenk MO, Hamers R, Banfield JF. Microbial oxidation of pyrite; experiments using microorganisms from an extreme acidic environment American Mineralogist. 83: 1444-1453. DOI: 10.2138/Am-1998-11-1233  0.346
1998 Banfield JF. Low-Temperature Alteration in Tuffs from Yucca Mountain, Nevada Clays and Clay Minerals. 46: 27-37. DOI: 10.1346/Ccmn.1998.0460104  0.308
1998 Barker WW, Banfield JF. Zones of Chemical and Physical Interaction at Interfaces Between Microbial Communities and Minerals: A Model Geomicrobiology Journal. 15: 223-244. DOI: 10.1080/01490459809378078  0.33
1996 Penn RL, Banfield JF, Voigt J. Synthesis of Nanocrystalline Barium-Hexaferrite from Nanocrystalline Goethite Using the Hydrothermal Method: Particle Size Evolution and Magnetic Properties Mrs Proceedings. 432. DOI: 10.1557/Proc-432-175  0.62
1996 Barker W, Banfield J. Biologically versus inorganically mediated weathering reactions: relationships between minerals and extracellular microbial polymers in lithobiontic communities Chemical Geology. 132: 55-69. DOI: 10.1016/S0009-2541(96)00041-1  0.328
1993 Veblen DR, Banfield JF, Guthrie GD, Heaney PJ, Ilton ES, Livi KJ, Smelik EA. High-resolution and analytical transmission electron microscopy of mineral disorder and reactions. Science (New York, N.Y.). 260: 1465-72. PMID 17739802 DOI: 10.1126/Science.260.5113.1465  0.761
1993 Casey WH, Westrich HR, Banfield JF, Ferruzzi G, Arnold GW. Leaching and reconstruction at the surfaces of dissolving chain-silicate minerals Nature. 366: 253-256. DOI: 10.1038/366253A0  0.302
1993 Casey WH, Banfield JF, Westrich HR, McLaughlin L. What do dissolution experiments tell us about natural weathering? Chemical Geology. 105: 1-15. DOI: 10.1016/0009-2541(93)90115-Y  0.304
1991 Banfield JF, Jones BF, Veblen DR. An AEM-TEM study of weathering and diagenesis, Abert Lake, Oregon: II. Diagenetic modification of the sedimentary assemblage Geochimica Et Cosmochimica Acta. 55: 2795-2810. DOI: 10.1016/0016-7037(91)90445-B  0.719
1991 Banfield JF, Jones BF, Veblen DR. An aem-tem study of weathering and diagenesis, Abert Lake, Oregon: I. Weathering reactions in the volcanics Geochimica Et Cosmochimica Acta. 55: 2781-2793. DOI: 10.1016/0016-7037(91)90444-A  0.714
1990 Banfield JF, Veblen DR, Jones BF. Transmission electron microscopy of subsolidus oxidation and weathering of olivine Contributions to Mineralogy and Petrology. 106: 110-123. DOI: 10.1007/Bf00306412  0.708
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