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James C. Schnable

Affiliations: 
2014- The University of Nebraska - Lincoln, Lincoln, NE 
Area:
Plant Biology, Comparative Genomics, Phenotyping, Maize
Website:
http://schnablelab.org/
Google:
"James Schnable"
Bio:

James Carey Schnable is an American geneticist. He was born in Ames, IA, earned at BA in Biology from Cornell University in 2008 and a PhD in Plant Biology from UC-Berkeley where he was a student of Michael Freeling and published on the functionally distinct subgenomes present within maize. From 2013-2014 he was an NSF postdoctoral fellow at the Danforth Center and the Chinese Academy of Agricultural Sciences working with Xianmin Diao. He was hired Assistant Professor at the University of Nebraska-Lincoln in 2014 and promoted to Associate Professor at the same institution in 2019. He was the 2018 Marcus Rhoades Early Career maize genetics investigator and received the American Society of Plant Biologists Early Career Award in 2019.

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Parents

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Michael Freeling grad student 2012 UC Berkeley
 (Interactions among gene regulation and expression, sequence deletion, and purifying selection following whole genome duplications in flowering plants.)

Children

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Zhikai Liang grad student 2015-2019 University of Nebraska - Lincoln
Daniel Santana de Carvalho grad student 2015-2019 University of Nebraska - Lincoln
Preston Hurst grad student 2017-2019 University of Nebraska - Lincoln
Yang Zhang post-doc 2015-2017 St. Jude Children's Research Hospital
Sunil K. Kenchanmane Raju post-doc 2017-2018 University of Nebraska

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Publications

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Liang Z, Meng X, Schnable JC. (2023) A Transferable Machine Learning Framework for Predicting Transcriptional Responses of Genes Across Species. Methods in Molecular Biology (Clifton, N.J.). 2698: 361-379
Barnes AC, Myers JL, Surber SM, et al. (2023) Oligogalactolipid production during cold challenge is conserved in early diverging lineages. Journal of Experimental Botany
Sahay S, Grzybowski M, Schnable JC, et al. (2023) Genetic control of photoprotection and photosystem II operating efficiency in plants. The New Phytologist. 239: 1068-1082
Korth N, Parsons L, Van Haute MJ, et al. (2022) The Unique Seed Protein Composition of Quality Protein Popcorn Promotes Growth of Beneficial Bacteria From the Human Gut Microbiome. Frontiers in Microbiology. 13: 921456
Boatwright JL, Sapkota S, Jin H, et al. (2022) Sorghum Association Panel Whole-Genome Sequencing Establishes Cornerstone Resource for Dissecting Genomic Diversity. The Plant Journal : For Cell and Molecular Biology
Yu H, Li M, Sandhu J, et al. (2022) Pervasive misannotation of microexons that are evolutionarily conserved and crucial for gene function in plants. Nature Communications. 13: 820
Tross MC, Gaillard M, Zwiener M, et al. (2021) 3D reconstruction identifies loci linked to variation in angle of individual sorghum leaves. Peerj. 9: e12628
Hurst P, Schnable JC, Holding DR. (2021) Tandem duplicate expression patterns are conserved between maize haplotypes of the -zein gene family. Plant Direct. 5: e346
Woodhouse MR, Sen S, Schott D, et al. (2021) qTeller: A tool for comparative multi-genomic gene expression analysis. Bioinformatics (Oxford, England)
Busta L, Schmitz E, Kosma DK, et al. (2021) A co-opted steroid synthesis gene, maintained in sorghum but not maize, is associated with a divergence in leaf wax chemistry. Proceedings of the National Academy of Sciences of the United States of America. 118
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