| Year |
Citation |
Score |
| 2023 |
Liang Z, Meng X, Schnable JC. A Transferable Machine Learning Framework for Predicting Transcriptional Responses of Genes Across Species. Methods in Molecular Biology (Clifton, N.J.). 2698: 361-379. PMID 37682485 DOI: 10.1007/978-1-0716-3354-0_21 |
0.741 |
|
| 2023 |
Barnes AC, Myers JL, Surber SM, Liang Z, Mower JP, Schnable JC, Roston RL. Oligogalactolipid production during cold challenge is conserved in early diverging lineages. Journal of Experimental Botany. PMID 37357909 DOI: 10.1093/jxb/erad241 |
0.69 |
|
| 2023 |
Sahay S, Grzybowski M, Schnable JC, Głowacka K. Genetic control of photoprotection and photosystem II operating efficiency in plants. The New Phytologist. 239: 1068-1082. PMID 37212042 DOI: 10.1111/nph.18980 |
0.409 |
|
| 2022 |
Korth N, Parsons L, Van Haute MJ, Yang Q, Hurst P, Schnable JC, Holding DR, Benson AK. The Unique Seed Protein Composition of Quality Protein Popcorn Promotes Growth of Beneficial Bacteria From the Human Gut Microbiome. Frontiers in Microbiology. 13: 921456. PMID 35910657 DOI: 10.3389/fmicb.2022.921456 |
0.74 |
|
| 2022 |
Boatwright JL, Sapkota S, Jin H, Schnable JC, Brenton Z, Boyles R, Kresovich S. Sorghum Association Panel Whole-Genome Sequencing Establishes Cornerstone Resource for Dissecting Genomic Diversity. The Plant Journal : For Cell and Molecular Biology. PMID 35653240 DOI: 10.1111/tpj.15853 |
0.341 |
|
| 2022 |
Yu H, Li M, Sandhu J, Sun G, Schnable JC, Walia H, Xie W, Yu B, Mower JP, Zhang C. Pervasive misannotation of microexons that are evolutionarily conserved and crucial for gene function in plants. Nature Communications. 13: 820. PMID 35145097 DOI: 10.1038/s41467-022-28449-8 |
0.402 |
|
| 2021 |
Tross MC, Gaillard M, Zwiener M, Miao C, Grove RJ, Li B, Benes B, Schnable JC. 3D reconstruction identifies loci linked to variation in angle of individual sorghum leaves. Peerj. 9: e12628. PMID 35036135 DOI: 10.7717/peerj.12628 |
0.319 |
|
| 2021 |
Hurst P, Schnable JC, Holding DR. Tandem duplicate expression patterns are conserved between maize haplotypes of the -zein gene family. Plant Direct. 5: e346. PMID 34541444 DOI: 10.1002/pld3.346 |
0.795 |
|
| 2021 |
Woodhouse MR, Sen S, Schott D, Portwood JL, Freeling M, Walley JW, Andorf CM, Schnable JC. qTeller: A tool for comparative multi-genomic gene expression analysis. Bioinformatics (Oxford, England). PMID 34406385 DOI: 10.1093/bioinformatics/btab604 |
0.627 |
|
| 2021 |
Busta L, Schmitz E, Kosma DK, Schnable JC, Cahoon EB. A co-opted steroid synthesis gene, maintained in sorghum but not maize, is associated with a divergence in leaf wax chemistry. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33723068 DOI: 10.1073/pnas.2022982118 |
0.35 |
|
| 2021 |
Meng X, Liang Z, Dai X, Zhang Y, Mahboub S, Ngu DW, Roston RL, Schnable JC. Predicting transcriptional responses to cold stress across plant species. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33658387 DOI: 10.1073/pnas.2026330118 |
0.743 |
|
| 2021 |
Lai X, Bendix C, Zhang Y, Schnable JC, Harmon FG. 72-h diurnal RNA-seq analysis of fully expanded third leaves from maize, sorghum, and foxtail millet at 3-h resolution. Bmc Research Notes. 14: 24. PMID 33446233 DOI: 10.1186/s13104-020-05431-5 |
0.372 |
|
| 2020 |
Thudi M, Palakurthi R, Schnable JC, Chitikineni A, Dreisigacker S, Mace E, Srivastava RK, Satyavathi CT, Odeny D, Tiwari VK, Lam HM, Hong YB, Singh VK, Li G, Xu Y, et al. Genomic resources in plant breeding for sustainable agriculture. Journal of Plant Physiology. 257: 153351. PMID 33412425 DOI: 10.1016/j.jplph.2020.153351 |
0.338 |
|
| 2020 |
Wang R, Qiu Y, Zhou Y, Liang Z, Schnable JC. A High-Throughput Phenotyping Pipeline for Image Processing and Functional Growth Curve Analysis. Plant Phenomics (Washington, D.C.). 2020: 7481687. PMID 33313562 DOI: 10.34133/2020/7481687 |
0.71 |
|
| 2020 |
Dai X, Xu Z, Liang Z, Tu X, Zhong S, Schnable JC, Li P. Non-homology-based prediction of gene functions in maize (Zea mays ssp. mays). The Plant Genome. 13: e20015. PMID 33016608 DOI: 10.1002/Tpg2.20015 |
0.747 |
|
| 2020 |
Kenchanmane Raju SK, Adkins M, Enersen A, Santana de Carvalho D, Studer AJ, Ganapathysubramanian B, Schnable PS, Schnable JC. Leaf Angle eXtractor: A high-throughput image processing framework for leaf angle measurements in maize and sorghum. Applications in Plant Sciences. 8: e11385. PMID 32999772 DOI: 10.1002/Aps3.11385 |
0.723 |
|
| 2020 |
Lai X, Bendix C, Yan L, Zhang Y, Schnable JC, Harmon FG. Interspecific analysis of diurnal gene regulation in panicoid grasses identifies known and novel regulatory motifs. Bmc Genomics. 21: 428. PMID 32586356 DOI: 10.1186/S12864-020-06824-3 |
0.417 |
|
| 2020 |
Moisseyev G, Park K, Cui A, Freitas D, Rajagopal D, Konda AR, Martin-Olenski M, Mcham M, Liu K, Du Q, Schnable JC, Moriyama EN, Cahoon EB, Zhang C. RGPDB: database of root-associated genes and promoters in maize, soybean, and sorghum. Database : the Journal of Biological Databases and Curation. 2020. PMID 32500918 DOI: 10.1093/Database/Baaa038 |
0.469 |
|
| 2020 |
Han J, Wang P, Wang Q, Lin Q, Chen Z, Yu G, Miao C, Dao Y, Wu R, Schnable J, Tang H, Wang K. Genome-wide Characterization of DNase I-hypersensitive Sites and Cold Response Regulatory Landscapes in Grasses. The Plant Cell. PMID 32471863 DOI: 10.1105/Tpc.19.00716 |
0.41 |
|
| 2020 |
Miao C, Xu Y, Liu S, Schnable PS, Schnable J. Increased power and accuracy of causal locus identification in time-series genome-wide association in sorghum. Plant Physiology. PMID 32461303 DOI: 10.1104/Pp.20.00277 |
0.49 |
|
| 2020 |
Peng B, Guan K, Tang J, Ainsworth EA, Asseng S, Bernacchi CJ, Cooper M, Delucia EH, Elliott JW, Ewert F, Grant RF, Gustafson DI, Hammer GL, Jin Z, Jones JW, ... ... Schnable JC, et al. Towards a multiscale crop modelling framework for climate change adaptation assessment. Nature Plants. 6: 338-348. PMID 32296143 DOI: 10.1038/S41477-020-0625-3 |
0.313 |
|
| 2020 |
Liang Z, Qiu Y, Schnable JC. Genome-phenome wide association in maize and Arabidopsis identifies a common molecular and evolutionary signature. Molecular Plant. PMID 32171733 DOI: 10.1016/J.Molp.2020.03.003 |
0.777 |
|
| 2020 |
Carvalho DS, Nishimwe AV, Schnable JC. IsoSeq transcriptome assembly of C panicoid grasses provides tools to study evolutionary change in the Panicoideae. Plant Direct. 4: e00203. PMID 32128472 DOI: 10.1002/pld3.203 |
0.339 |
|
| 2020 |
Benes B, Guan K, Lang M, Long SP, Lynch JP, Marshall-Colón A, Peng B, Schnable J, Sweetlove L, Turk M. Multiscale computational models can guide experimentation and targeted measurements for crop improvement. The Plant Journal : For Cell and Molecular Biology. PMID 32053236 DOI: 10.1111/Tpj.14722 |
0.313 |
|
| 2020 |
McFarland BA, AlKhalifah N, Bohn M, Bubert J, Buckler ES, Ciampitti I, Edwards J, Ertl D, Gage JL, Falcon CM, Flint-Garcia S, Gore MA, Graham C, Hirsch CN, Holland JB, ... ... Schnable JC, et al. Maize genomes to fields (G2F): 2014-2017 field seasons: genotype, phenotype, climatic, soil, and inbred ear image datasets. Bmc Research Notes. 13: 71. PMID 32051026 DOI: 10.1186/S13104-020-4922-8 |
0.34 |
|
| 2020 |
Wang R, Qiu Y, Zhou Y, Liang Z, Schnable JC. A High-Throughput Phenotyping Pipeline for Image Processing and Functional Growth Curve Analysis Plant Phenomics. 2020: 1-8. DOI: 10.34133/2020/7481687 |
0.712 |
|
| 2020 |
Dai X, Xu Z, Liang Z, Tu X, Zhong S, Schnable JC, Li P. Non‐homology‐based prediction of gene functions in maize (
Zea mays
ssp.
mays
) The Plant Genome. 13. DOI: 10.1002/tpg2.20015 |
0.724 |
|
| 2020 |
Kenchanmane Raju SK, Thompson AM, Schnable JC. Advances in plant phenomics: From data and algorithms to biological insights Applications in Plant Sciences. 8. DOI: 10.1002/Aps3.11386 |
0.748 |
|
| 2019 |
Jarquin D, Howard R, Liang Z, Gupta SK, Schnable JC, Crossa J. Enhancing Hybrid Prediction in Pearl Millet Using Genomic and/or Multi-Environment Phenotypic Information of Inbreds. Frontiers in Genetics. 10: 1294. PMID 32038702 DOI: 10.3389/Fgene.2019.01294 |
0.741 |
|
| 2019 |
Zheng Z, Hey S, Jubery T, Liu H, Yang Y, Coffey L, Miao C, Sigmon B, Schnable J, Hochholdinger F, Ganapathysubramanian B, Schnable PS. Shared genetic control of root system architecture between Zea mays and Sorghum bicolor. Plant Physiology. PMID 31740504 DOI: 10.1104/Pp.19.00752 |
0.487 |
|
| 2019 |
Qi P, Eudy D, Schnable JC, Schmutz J, Raymer PL, Devos KM. High Density Genetic Maps of Seashore Paspalum Using Genotyping-By-Sequencing and Their Relationship to The Sorghum Bicolor Genome. Scientific Reports. 9: 12183. PMID 31434917 DOI: 10.1038/S41598-019-48257-3 |
0.326 |
|
| 2019 |
Ge Y, Atefi A, Zhang H, Miao C, Ramamurthy RK, Sigmon B, Yang J, Schnable JC. High-throughput analysis of leaf physiological and chemical traits with VIS-NIR-SWIR spectroscopy: a case study with a maize diversity panel. Plant Methods. 15: 66. PMID 31391863 DOI: 10.1186/S13007-019-0450-8 |
0.359 |
|
| 2019 |
Li YH, Li D, Jiao YQ, Schnable JC, Li YF, Li HH, Chen HZ, Hong HL, Zhang T, Liu B, Liu ZX, You QB, Tian Y, Guo Y, Guan RX, et al. Identification of Loci Controlling Adaptation in Chinese Soybean Landraces via a Combination of Conventional and Bioclimatic GWAS. Plant Biotechnology Journal. PMID 31278885 DOI: 10.1111/Pbi.13206 |
0.402 |
|
| 2019 |
Schnable JC. Genes and Gene Models, An Important Distinction. The New Phytologist. PMID 31241760 DOI: 10.1111/Nph.16011 |
0.503 |
|
| 2019 |
Yan L, Kenchanmane Raju SK, Lai X, Zhang Y, Dai X, Rodriguez O, Mahboub S, Roston RL, Schnable JC. Parallels between natural selection in the cold-adapted crop-wild relative Tripsacum dactyloides and artificial selection in temperate adapted maize. The Plant Journal : For Cell and Molecular Biology. PMID 31069858 DOI: 10.1111/Tpj.14376 |
0.788 |
|
| 2019 |
Zou C, Li L, Miki D, Li D, Tang Q, Xiao L, Rajput S, Deng P, Peng L, Jia W, Huang R, Zhang M, Sun Y, Hu J, Fu X, ... ... Schnable JC, et al. The genome of broomcorn millet. Nature Communications. 10: 436. PMID 30683860 DOI: 10.1038/S41467-019-08409-5 |
0.489 |
|
| 2019 |
Atefi A, Ge Y, Pitla S, Schnable J. In vivo human-like robotic phenotyping of leaf traits in maize and sorghum in greenhouse Computers and Electronics in Agriculture. 163: 104854. DOI: 10.1016/J.Compag.2019.104854 |
0.306 |
|
| 2019 |
Bai G, Ge Y, Scoby D, Leavitt B, Stoerger V, Kirchgessner N, Irmak S, Graef G, Schnable J, Awada T. NU-Spidercam: A large-scale, cable-driven, integrated sensing and robotic system for advanced phenotyping, remote sensing, and agronomic research Computers and Electronics in Agriculture. 160: 71-81. DOI: 10.1016/J.Compag.2019.03.009 |
0.325 |
|
| 2019 |
Li L, Li X, Li L, Schnable J, Gu R, Wang J. QTL identification and epistatic effect analysis of seed size- and weight-related traits in Zea mays L Molecular Breeding. 39. DOI: 10.1007/S11032-019-0981-8 |
0.318 |
|
| 2018 |
Kenchanmane Raju SK, Barnes AC, Schnable JC, Roston RL. Low-temperature tolerance in land plants: Are transcript and membrane responses conserved? Plant Science : An International Journal of Experimental Plant Biology. 276: 73-86. PMID 30348330 DOI: 10.1016/J.Plantsci.2018.08.002 |
0.762 |
|
| 2018 |
Miao C, Yang J, Schnable JC. Optimizing the identification of causal variants across varying genetic architectures in crops. Plant Biotechnology Journal. PMID 30320953 DOI: 10.1111/Pbi.13023 |
0.388 |
|
| 2018 |
Liu S, Schnable JC, Ott A, Eddy Yeh CT, Springer NM, Yu J, Muehlbauer G, Timmermans MCP, Scanlon MJ, Schnable PS. Intragenic Meiotic Crossovers Generate Novel Alleles with Transgressive Expression Levels. Molecular Biology and Evolution. PMID 30184112 DOI: 10.1093/Molbev/Msy174 |
0.772 |
|
| 2018 |
Ott A, Schnable JC, Yeh CT, Wu L, Liu C, Hu HC, Dalgard CL, Sarkar S, Schnable PS. Linked read technology for assembling large complex and polyploid genomes. Bmc Genomics. 19: 651. PMID 30180802 DOI: 10.1186/S12864-018-5040-Z |
0.355 |
|
| 2018 |
AlKhalifah N, Campbell DA, Falcon CM, Gardiner JM, Miller ND, Romay MC, Walls R, Walton R, Yeh CT, Bohn M, Bubert J, Buckler ES, Ciampitti I, Flint-Garcia S, Gore MA, ... ... Schnable JC, et al. Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets. Bmc Research Notes. 11: 452. PMID 29986751 DOI: 10.1186/S13104-018-3508-1 |
0.395 |
|
| 2018 |
Miao C, Fang J, Li D, Liang P, Zhang X, Yang J, Schnable JC, Tang H. Genotype-Corrector: improved genotype calls for genetic mapping in F and RIL populations. Scientific Reports. 8: 10088. PMID 29973633 DOI: 10.1038/S41598-018-28294-0 |
0.338 |
|
| 2018 |
Carvalho DS, Schnable JC, Almeida AMR. Integrating Phylogenetic and Network Approaches to Study Gene Family Evolution: The Case of the Family of Floral Genes. Evolutionary Bioinformatics Online. 14: 1176934318764683. PMID 29899658 DOI: 10.1177/1176934318764683 |
0.372 |
|
| 2018 |
Liang Z, Gupta SK, Yeh CT, Zhang Y, Ngu DW, Kumar R, Patil HT, Mungra KD, Yadav DV, Rathore A, Srivastava RK, Gupta R, Yang J, Varshney RK, Schnable PS, ... Schnable JC, et al. Phenotypic Data from Inbred Parents Can Improve Genomic Prediction in Pearl Millet Hybrids. G3 (Bethesda, Md.). PMID 29794163 DOI: 10.1534/G3.118.200242 |
0.729 |
|
| 2018 |
Washburn JD, Schnable JC, Conant GC, Brutnell TP, Shao Y, Zhang Y, Ludwig M, Davidse G, Pires JC. Author Correction: Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogenetic Tree of the Paniceae Grasses. Scientific Reports. 8: 7120. PMID 29720618 DOI: 10.1038/S41598-018-25620-4 |
0.374 |
|
| 2018 |
Nani TF, Schnable JC, Washburn JD, Albert P, Pereira WA, Sobrinho FS, Birchler JA, Techio VH. Location of low copy genes in chromosomes of Brachiaria spp. Molecular Biology Reports. PMID 29330722 DOI: 10.1007/S11033-018-4144-5 |
0.45 |
|
| 2017 |
Liang Z, Schnable JC. Functional Divergence Between Subgenomes and Gene Pairs After Whole Genome Duplications. Molecular Plant. PMID 29275166 DOI: 10.1016/J.Molp.2017.12.010 |
0.785 |
|
| 2017 |
Lai X, Yan L, Lu Y, Schnable JC. Largely unlinked gene sets targeted by selection for domestication syndrome phenotypes in maize and sorghum. The Plant Journal : For Cell and Molecular Biology. PMID 29265526 DOI: 10.1111/Tpj.13806 |
0.442 |
|
| 2017 |
Liang Z, Pandey P, Stoerger V, Xu Y, Qiu Y, Ge Y, Schnable JC. Conventional and hyperspectral time-series imaging of maize lines widely used in field trials. Gigascience. PMID 29186425 DOI: 10.1093/Gigascience/Gix117 |
0.74 |
|
| 2017 |
Gage JL, Jarquin D, Romay C, Lorenz A, Buckler ES, Kaeppler S, Alkhalifah N, Bohn M, Campbell DA, Edwards J, Ertl D, Flint-Garcia S, Gardiner J, Good B, Hirsch CN, ... ... Schnable J, et al. The effect of artificial selection on phenotypic plasticity in maize. Nature Communications. 8: 1348. PMID 29116144 DOI: 10.1038/S41467-017-01450-2 |
0.367 |
|
| 2017 |
Washburn JD, Schnable JC, Conant GC, Brutnell TP, Shao Y, Zhang Y, Ludwig M, Davidse G, Pires JC. Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogentic Tree of the Paniceae Grasses. Scientific Reports. 7: 13528. PMID 29051622 DOI: 10.1038/S41598-017-13236-Z |
0.504 |
|
| 2017 |
Ott A, Liu S, Schnable JC, Yeh C', Wang KS, Schnable PS. tGBS® genotyping-by-sequencing enables reliable genotyping of heterozygous loci. Nucleic Acids Research. PMID 29036322 DOI: 10.1093/Nar/Gkx853 |
0.365 |
|
| 2017 |
Lai X, Schnable JC, Liao Z, Xu J, Zhang G, Li C, Hu E, Rong T, Xu Y, Lu Y. Genome-wide characterization of non-reference transposable element insertion polymorphisms reveals genetic diversity in tropical and temperate maize. Bmc Genomics. 18: 702. PMID 28877662 DOI: 10.1186/S12864-017-4103-X |
0.429 |
|
| 2017 |
Mei W, Boatwright L, Feng G, Schnable JC, Barbazuk WB. Evolutionarily Conserved Alternative Splicing Across Monocots. Genetics. PMID 28839042 DOI: 10.1534/Genetics.117.300189 |
0.467 |
|
| 2017 |
Pandey P, Ge Y, Stoerger V, Schnable JC. High Throughput In vivo Analysis of Plant Leaf Chemical Properties Using Hyperspectral Imaging. Frontiers in Plant Science. 8: 1348. PMID 28824683 DOI: 10.3389/Fpls.2017.01348 |
0.362 |
|
| 2017 |
Zhang Y, Ngu DW, Carvalho D, Liang Z, Qiu Y, Roston R, Schnable J. Differentially Regulated Orthologs in Sorghum and the Subgenomes of Maize. The Plant Cell. PMID 28733421 DOI: 10.1105/Tpc.17.00354 |
0.766 |
|
| 2017 |
Lai X, Behera S, Liang Z, Lu Y, Deogun JS, Schnable JC. STAG-CNS: An Order-Aware Conserved Non-coding Sequences Discovery Tool For Arbitrary Numbers of Species. Molecular Plant. PMID 28602693 DOI: 10.1016/J.Molp.2017.05.010 |
0.763 |
|
| 2017 |
Lai X, Schnable JC. Harnessing the Potential of the Tea Tree Genome. Molecular Plant. PMID 28571681 DOI: 10.1016/J.Molp.2017.05.009 |
0.303 |
|
| 2017 |
Mei W, Liu S, Schnable JC, Yeh CT, Springer NM, Schnable PS, Barbazuk WB. A Comprehensive Analysis of Alternative Splicing in Paleopolyploid Maize. Frontiers in Plant Science. 8: 694. PMID 28539927 DOI: 10.3389/Fpls.2017.00694 |
0.488 |
|
| 2016 |
Joyce BL, Haug-Baltzell A, Davey S, Bomhoff M, Schnable JC, Lyons E. FractBias: a graphical tool for assessing fractionation bias following polyploidy. Bioinformatics (Oxford, England). PMID 27794557 DOI: 10.1093/Bioinformatics/Btw666 |
0.707 |
|
| 2016 |
Walley JW, Sartor RC, Shen Z, Schmitz RJ, Wu KJ, Urich MA, Nery JR, Smith LG, Schnable JC, Ecker JR, Briggs SP. Integration of omic networks in a developmental atlas of maize. Science (New York, N.Y.). 353: 814-8. PMID 27540173 DOI: 10.1126/Science.Aag1125 |
0.323 |
|
| 2016 |
Huang P, Studer AJ, Schnable JC, Kellogg EA, Brutnell TP. Cross species selection scans identify components of C4 photosynthesis in the grasses. Journal of Experimental Botany. PMID 27436281 DOI: 10.1093/Jxb/Erw256 |
0.471 |
|
| 2016 |
Liang Z, Schnable JC. RNA-Seq Based Analysis of Population Structure within the Maize Inbred B73. Plos One. 11: e0157942. PMID 27348435 DOI: 10.1371/Journal.Pone.0157942 |
0.731 |
|
| 2016 |
Liu X, Tang S, Jia G, Schnable JC, Su H, Tang C, Zhi H, Diao X. The C-terminal motif of SiAGO1b is required for the regulation of growth, development and stress responses in foxtail millet (Setaria italica (L.) P. Beauv). Journal of Experimental Botany. PMID 27045099 DOI: 10.1093/Jxb/Erw135 |
0.458 |
|
| 2016 |
Cheng F, Sun C, Wu J, Schnable J, Woodhouse MR, Liang J, Cai C, Freeling M, Wang X. Epigenetic regulation of subgenome dominance following whole genome triplication in Brassica rapa. The New Phytologist. 211: 288-99. PMID 26871271 DOI: 10.1111/Nph.13884 |
0.669 |
|
| 2016 |
Ge Y, Bai G, Stoerger V, Schnable JC. Temporal dynamics of maize plant growth, water use, and leaf water content using automated high throughput RGB and hyperspectral imaging Computers and Electronics in Agriculture. 127: 625-632. DOI: 10.1016/J.Compag.2016.07.028 |
0.364 |
|
| 2016 |
Rajput SG, Santra DK, Schnable J. Mapping QTLs for morpho-agronomic traits in proso millet (Panicum miliaceum L.) Molecular Breeding. 36. DOI: 10.1007/S11032-016-0460-4 |
0.322 |
|
| 2015 |
Tang H, Bomhoff MD, Briones E, Zhang L, Schnable JC, Lyons E. SynFind: compiling syntenic regions across any set of genomes on demand. Genome Biology and Evolution. PMID 26560340 DOI: 10.1093/Gbe/Evv219 |
0.723 |
|
| 2015 |
Washburn JD, Schnable JC, Davidse G, Pires JC. Phylogeny and photosynthesis of the grass tribe Paniceae. American Journal of Botany. 102: 1493-505. PMID 26373976 DOI: 10.3732/Ajb.1500222 |
0.334 |
|
| 2015 |
Jia G, Liu X, Schnable JC, Niu Z, Wang C, Li Y, Wang S, Wang S, Liu J, Guo E, Zhi H, Diao X. Microsatellite Variations of Elite Setaria Varieties Released during Last Six Decades in China. Plos One. 10: e0125688. PMID 25932649 DOI: 10.1371/Journal.Pone.0125688 |
0.44 |
|
| 2015 |
Tang H, Zhang X, Miao C, Zhang J, Ming R, Schnable JC, Schnable PS, Lyons E, Lu J. ALLMAPS: robust scaffold ordering based on multiple maps. Genome Biology. 16: 3. PMID 25583564 DOI: 10.1186/S13059-014-0573-1 |
0.628 |
|
| 2015 |
Schnable JC. Genome evolution in maize: from genomes back to genes. Annual Review of Plant Biology. 66: 329-43. PMID 25494463 DOI: 10.1146/Annurev-Arplant-043014-115604 |
0.553 |
|
| 2014 |
Paschold A, Larson NB, Marcon C, Schnable JC, Yeh CT, Lanz C, Nettleton D, Piepho HP, Schnable PS, Hochholdinger F. Nonsyntenic genes drive highly dynamic complementation of gene expression in maize hybrids. The Plant Cell. 26: 3939-48. PMID 25315323 DOI: 10.1105/Tpc.114.130948 |
0.456 |
|
| 2014 |
de Almeida AM, Yockteng R, Schnable J, Alvarez-Buylla ER, Freeling M, Specht CD. Co-option of the polarity gene network shapes filament morphology in angiosperms. Scientific Reports. 4: 6194. PMID 25168962 DOI: 10.1038/Srep06194 |
0.642 |
|
| 2014 |
Qie L, Jia G, Zhang W, Schnable J, Shang Z, Li W, Liu B, Li M, Chai Y, Zhi H, Diao X. Mapping of quantitative trait locus (QTLs) that contribute to germination and early seedling drought tolerance in the interspecific cross Setaria italica×Setaria viridis. Plos One. 9: e101868. PMID 25033201 DOI: 10.1371/Journal.Pone.0101868 |
0.385 |
|
| 2014 |
Martin JA, Johnson NV, Gross SM, Schnable J, Meng X, Wang M, Coleman-Derr D, Lindquist E, Wei CL, Kaeppler S, Chen F, Wang Z. A near complete snapshot of the Zea mays seedling transcriptome revealed from ultra-deep sequencing. Scientific Reports. 4: 4519. PMID 24682209 DOI: 10.1038/Srep04519 |
0.437 |
|
| 2014 |
Garsmeur O, Schnable JC, Almeida A, Jourda C, D'Hont A, Freeling M. Two evolutionarily distinct classes of paleopolyploidy. Molecular Biology and Evolution. 31: 448-54. PMID 24296661 DOI: 10.1093/Molbev/Mst230 |
0.7 |
|
| 2014 |
Tang H, Lyons E, Schnable JC. Early History of the Angiosperms Advances in Botanical Research. 69: 195-222. DOI: 10.1016/B978-0-12-417163-3.00008-1 |
0.713 |
|
| 2014 |
Goff SA, Schnable JC, Feldmann KA. The Evolution of Plant Gene and Genome Sequencing Advances in Botanical Research. 69: 47-90. DOI: 10.1016/B978-0-12-417163-3.00003-2 |
0.476 |
|
| 2013 |
Turco G, Schnable JC, Pedersen B, Freeling M. Automated conserved non-coding sequence (CNS) discovery reveals differences in gene content and promoter evolution among grasses. Frontiers in Plant Science. 4: 170. PMID 23874343 DOI: 10.3389/Fpls.2013.00170 |
0.642 |
|
| 2012 |
Schnable JC, Wang X, Pires JC, Freeling M. Escape from preferential retention following repeated whole genome duplications in plants. Frontiers in Plant Science. 3: 94. PMID 22639677 DOI: 10.3389/Fpls.2012.00094 |
0.684 |
|
| 2012 |
Freeling M, Woodhouse MR, Subramaniam S, Turco G, Lisch D, Schnable JC. Fractionation mutagenesis and similar consequences of mechanisms removing dispensable or less-expressed DNA in plants. Current Opinion in Plant Biology. 15: 131-9. PMID 22341793 DOI: 10.1016/J.Pbi.2012.01.015 |
0.823 |
|
| 2012 |
Tang H, Woodhouse MR, Cheng F, Schnable JC, Pedersen BS, Conant G, Wang X, Freeling M, Pires JC. Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy. Genetics. 190: 1563-74. PMID 22308264 DOI: 10.1534/Genetics.111.137349 |
0.655 |
|
| 2012 |
Schnable JC, Freeling M, Lyons E. Genome-wide analysis of syntenic gene deletion in the grasses. Genome Biology and Evolution. 4: 265-77. PMID 22275519 DOI: 10.1093/Gbe/Evs009 |
0.794 |
|
| 2012 |
Zhang W, Wu Y, Schnable JC, Zeng Z, Freeling M, Crawford GE, Jiang J. High-resolution mapping of open chromatin in the rice genome. Genome Research. 22: 151-62. PMID 22110044 DOI: 10.1101/Gr.131342.111 |
0.601 |
|
| 2011 |
Schnable JC, Pedersen BS, Subramaniam S, Freeling M. Dose-sensitivity, conserved non-coding sequences, and duplicate gene retention through multiple tetraploidies in the grasses. Frontiers in Plant Science. 2: 2. PMID 22645525 DOI: 10.3389/Fpls.2011.00002 |
0.77 |
|
| 2011 |
Eichten SR, Swanson-Wagner RA, Schnable JC, Waters AJ, Hermanson PJ, Liu S, Yeh CT, Jia Y, Gendler K, Freeling M, Schnable PS, Vaughn MW, Springer NM. Heritable epigenetic variation among maize inbreds. Plos Genetics. 7: e1002372. PMID 22125494 DOI: 10.1371/Journal.Pgen.1002372 |
0.586 |
|
| 2011 |
Tang H, Lyons E, Pedersen B, Schnable JC, Paterson AH, Freeling M. Screening synteny blocks in pairwise genome comparisons through integer programming. Bmc Bioinformatics. 12: 102. PMID 21501495 DOI: 10.1186/1471-2105-12-102 |
0.739 |
|
| 2011 |
Schnable JC, Freeling M. Genes identified by visible mutant phenotypes show increased bias toward one of two subgenomes of maize. Plos One. 6: e17855. PMID 21423772 DOI: 10.1371/Journal.Pone.0017855 |
0.69 |
|
| 2011 |
Schnable JC, Springer NM, Freeling M. Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss. Proceedings of the National Academy of Sciences of the United States of America. 108: 4069-74. PMID 21368132 DOI: 10.1073/Pnas.1101368108 |
0.687 |
|
| 2010 |
Woodhouse MR, Schnable JC, Pedersen BS, Lyons E, Lisch D, Subramaniam S, Freeling M. Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs. Plos Biology. 8: e1000409. PMID 20613864 DOI: 10.1371/Journal.Pbio.1000409 |
0.798 |
|
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