Matthew Levy, Ph.D. - Publications

2003 University of Texas at Austin, Austin, Texas, U.S.A. 
Molecular Biology

59 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Powell Gray B, Song X, Hsu DS, Kratschmer C, Levy M, Barry AP, Sullenger BA. An Aptamer for Broad Cancer Targeting and Therapy. Cancers. 12. PMID 33142831 DOI: 10.3390/cancers12113217  0.64
2020 Shieh KR, Kratschmer C, Maier KE, Greally JM, Levy M, Golden A. AptCompare: optimized de novo motif discovery of RNA aptamers via HTS-SELEX. Bioinformatics (Oxford, England). PMID 31999328 DOI: 10.1093/bioinformatics/btaa054  0.64
2019 Maier KE, Rusconi CP, Levy M. To PEGylate or Not To PEGylate Therapeutics? Cell Chemical Biology. 26: 615-616. PMID 31100258 DOI: 10.1016/j.chembiol.2019.04.014  0.64
2018 Yan AC, Levy M. Aptamer-Mediated Delivery and Cell-Targeting Aptamers: Room for Improvement. Nucleic Acid Therapeutics. 28: 194-199. PMID 29883295 DOI: 10.1089/Nat.2018.0732  0.96
2018 Powell Gray B, Kelly L, Ahrens DP, Barry AP, Kratschmer C, Levy M, Sullenger BA. Tunable cytotoxic aptamer-drug conjugates for the treatment of prostate cancer. Proceedings of the National Academy of Sciences of the United States of America. PMID 29666232 DOI: 10.1073/Pnas.1717705115  0.64
2018 Kratschmer C, Levy M. Targeted Delivery of Auristatin-Modified Toxins to Pancreatic Cancer Using Aptamers. Molecular Therapy. Nucleic Acids. 10: 227-236. PMID 29499935 DOI: 10.1016/J.Omtn.2017.11.013  0.64
2017 Kratschmer C, Levy M. Effect of Chemical Modifications on Aptamer Stability in Serum. Nucleic Acid Therapeutics. PMID 28945147 DOI: 10.1089/Nat.2017.0680  0.64
2016 Kelly L, Kratschmer C, Maier KE, Yan AC, Levy M. Improved Synthesis and In Vitro Evaluation of an Aptamer Ribosomal Toxin Conjugate. Nucleic Acid Therapeutics. PMID 27228412 DOI: 10.1089/Nat.2015.0599  0.96
2016 Maier KE, Jangra RK, Shieh KR, Cureton DK, Xiao H, Snapp EL, Whelan SP, Chandran K, Levy M. A New Transferrin Receptor Aptamer Inhibits New World Hemorrhagic Fever Mammarenavirus Entry. Molecular Therapy. Nucleic Acids. 5: e321. PMID 27219515 DOI: 10.1038/Mtna.2016.32  0.64
2016 Maier KE, Levy M. From selection hits to clinical leads: progress in aptamer discovery. Molecular Therapy. Methods & Clinical Development. 5: 16014. PMID 27088106 DOI: 10.1038/Mtm.2016.14  0.64
2016 Gianella P, Snapp E, Levy M. An in vitro compartmentalization based method for the selection of bond-forming enzymes from large libraries. Biotechnology and Bioengineering. PMID 26806853 DOI: 10.1002/Bit.25939  1
2016 Wilner SE, Levy M. Synthesis and Characterization of Aptamer-Targeted SNALPs for the Delivery of siRNA. Methods in Molecular Biology (Clifton, N.J.). 1380: 211-24. PMID 26552829 DOI: 10.1007/978-1-4939-3197-2_18  1
2016 Levy MC, Garcia M, Blair P, Chen X, Gomes SL, Gower DB, Grames J, Kuil L, Liu Y, Marston L, Mccord PF, Roobavannan M, Zeng R. Wicked but worth it: Student perspectives on socio-hydrology Hydrological Processes. DOI: 10.1002/hyp.10791  0.52
2015 Katakowski JA, Mukherjee G, Wilner SE, Maier KE, Harrison MT, DiLorenzo TP, Levy M, Palliser D. Delivery of siRNAs to Dendritic Cells Using DEC205-Targeted Lipid Nanoparticles to Inhibit Immune Responses. Molecular Therapy : the Journal of the American Society of Gene Therapy. PMID 26412590 DOI: 10.1038/Mt.2015.175  1
2015 Wilner SE, Sparks SE, Cowburn D, Girvin ME, Levy M. Controlling lipid micelle stability using oligonucleotide headgroups. Journal of the American Chemical Society. 137: 2171-4. PMID 25634639 DOI: 10.1021/Ja512012M  1
2015 Levy M, Palliser D. Targeting liposomes to immune cells Biomaterials in Regenerative Medicine and the Immune System. 193-207. DOI: 10.1007/978-3-319-18045-8_11  1
2014 Trevino SG, Levy M. High-throughput bead-based identification of structure-switching aptamer beacons. Chembiochem : a European Journal of Chemical Biology. 15: 1877-81. PMID 25056925 DOI: 10.1002/Cbic.201402037  1
2014 Wengerter BC, Katakowski JA, Rosenberg JM, Park CG, Almo SC, Palliser D, Levy M. Aptamer-targeted antigen delivery. Molecular Therapy : the Journal of the American Society of Gene Therapy. 22: 1375-87. PMID 24682172 DOI: 10.1038/Mt.2014.51  1
2014 Padlan CS, Malashkevich VN, Almo SC, Levy M, Brenowitz M, Girvin ME. An RNA aptamer possessing a novel monovalent cation-mediated fold inhibits lysozyme catalysis by inhibiting the binding of long natural substrates. Rna (New York, N.Y.). 20: 447-61. PMID 24570482 DOI: 10.1261/Rna.043034.113  1
2014 Gollihar J, Levy M, Ellington AD. Biochemistry. Many paths to the origin of life. Science (New York, N.Y.). 343: 259-60. PMID 24436411 DOI: 10.1126/Science.1246704  1
2014 Lu WC, Levy M, Kincaid R, Ellington AD. Directed evolution of the substrate specificity of biotin ligase. Biotechnology and Bioengineering. 111: 1071-81. PMID 24375025 DOI: 10.1002/Bit.25176  1
2014 Yan A, Levy M. Cell internalization SELEX: in vitro selection for molecules that internalize into cells. Methods in Molecular Biology (Clifton, N.J.). 1103: 241-65. PMID 24318899 DOI: 10.1007/978-1-62703-730-3_18  1
2012 Davidson EA, Meyer AJ, Ellefson JW, Levy M, Ellington AD. An in vitro autogene. Acs Synthetic Biology. 1: 190-6. PMID 23651157 DOI: 10.1021/Sb3000113  1
2012 Wilner SE, Wengerter B, Maier K, de Lourdes Borba Magalhães M, Del Amo DS, Pai S, Opazo F, Rizzoli SO, Yan A, Levy M. An RNA alternative to human transferrin: a new tool for targeting human cells. Molecular Therapy. Nucleic Acids. 1: e21. PMID 23344001 DOI: 10.1038/Mtna.2012.14  1
2012 Opazo F, Levy M, Byrom M, Schäfer C, Geisler C, Groemer TW, Ellington AD, Rizzoli SO. Aptamers as potential tools for super-resolution microscopy. Nature Methods. 9: 938-9. PMID 23018995 DOI: 10.1038/Nmeth.2179  1
2012 Magalhães ML, Byrom M, Yan A, Kelly L, Li N, Furtado R, Palliser D, Ellington AD, Levy M. A general RNA motif for cellular transfection. Molecular Therapy : the Journal of the American Society of Gene Therapy. 20: 616-24. PMID 22233578 DOI: 10.1038/Mt.2011.277  1
2012 Patel VL, Mitra S, Harris R, Buxbaum AR, Lionnet T, Brenowitz M, Girvin M, Levy M, Almo SC, Singer RH, Chao JA. Spatial arrangement of an RNA zipcode identifies mRNAs under post-transcriptional control. Genes & Development. 26: 43-53. PMID 22215810 DOI: 10.1101/Gad.177428.111  1
2012 Pastore C, Topalidou I, Forouhar F, Yan AC, Levy M, Hunt JF. Crystal structure and RNA binding properties of the RNA recognition motif (RRM) and AlkB domains in human AlkB homolog 8 (ABH8), an enzyme catalyzing tRNA hypermodification. The Journal of Biological Chemistry. 287: 2130-43. PMID 22065580 DOI: 10.1074/Jbc.M111.286187  1
2011 Magalhães ML, Czekster CM, Guan R, Malashkevich VN, Almo SC, Levy M. Evolved streptavidin mutants reveal key role of loop residue in high-affinity binding. Protein Science : a Publication of the Protein Society. 20: 1145-54. PMID 21520321 DOI: 10.1002/Pro.642  1
2010 Soriano Del Amo D, Wang W, Jiang H, Besanceney C, Yan AC, Levy M, Liu Y, Marlow FL, Wu P. Biocompatible copper(I) catalysts for in vivo imaging of glycans. Journal of the American Chemical Society. 132: 16893-9. PMID 21062072 DOI: 10.1021/Ja106553E  1
2010 Chao JA, Patskovsky Y, Patel V, Levy M, Almo SC, Singer RH. ZBP1 recognition of beta-actin zipcode induces RNA looping. Genes & Development. 24: 148-58. PMID 20080952 DOI: 10.1101/Gad.1862910  1
2010 Davidson EA, VAN Blarcom T, Levy M, Ellington AD. Emulsion based selection of T7 promoters of varying activity. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 433-43. PMID 19908395  1
2009 Chen X, Denison L, Levy M, Ellington AD. Direct selection for ribozyme cleavage activity in cells. Rna (New York, N.Y.). 15: 2035-45. PMID 19776159 DOI: 10.1261/Rna.1635209  1
2009 Davidson EA, Dlugosz PJ, Levy M, Ellington AD. Directed evolution of proteins in vitro using compartmentalization in emulsions. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit 24.6. PMID 19575478 DOI: 10.1002/0471142727.Mb2406S87  1
2009 Narayanaswamy R, Levy M, Tsechansky M, Stovall GM, O'Connell JD, Mirrielees J, Ellington AD, Marcotte EM. Widespread reorganization of metabolic enzymes into reversible assemblies upon nutrient starvation. Proceedings of the National Academy of Sciences of the United States of America. 106: 10147-52. PMID 19502427 DOI: 10.1073/Pnas.0812771106  1
2009 Yan AC, Levy M. Aptamers and aptamer targeted delivery. Rna Biology. 6: 316-20. PMID 19458497 DOI: 10.4161/Rna.6.3.8808  1
2009 Hall B, Cater S, Levy M, Ellington AD. Kinetic optimization of a protein-responsive aptamer beacon. Biotechnology and Bioengineering. 103: 1049-59. PMID 19431189 DOI: 10.1002/Bit.22355  1
2008 Levy M, Ellington AD. Directed evolution of streptavidin variants using in vitro compartmentalization. Chemistry & Biology. 15: 979-89. PMID 18804035 DOI: 10.1016/J.Chembiol.2008.07.017  1
2008 Tabor JJ, Bayer TS, Simpson ZB, Levy M, Ellington AD. Engineering stochasticity in gene expression. Molecular Biosystems. 4: 754-61. PMID 18563250 DOI: 10.1039/B801245H  1
2008 Javier DJ, Nitin N, Levy M, Ellington A, Richards-Kortum R. Aptamer-targeted gold nanoparticles as molecular-specific contrast agents for reflectance imaging. Bioconjugate Chemistry. 19: 1309-12. PMID 18512972 DOI: 10.1021/Bc8001248  1
2007 Sokolov K, Nida D, Descour M, Lacy A, Levy M, Hall B, Dharmawardhane S, Ellington A, Korgel B, Richards-Kortum R. Molecular optical imaging of therapeutic targets of cancer. Advances in Cancer Research. 96: 299-344. PMID 17161684 DOI: 10.1016/S0065-230X(06)96011-4  1
2006 Chu TC, Marks JW, Lavery LA, Faulkner S, Rosenblum MG, Ellington AD, Levy M. Aptamer:toxin conjugates that specifically target prostate tumor cells. Cancer Research. 66: 5989-92. PMID 16778167 DOI: 10.1158/0008-5472.Can-05-4583  1
2006 Chu TC, Twu KY, Ellington AD, Levy M. Aptamer mediated siRNA delivery. Nucleic Acids Research. 34: e73. PMID 16740739 DOI: 10.1093/Nar/Gkl388  1
2006 Tabor JJ, Levy M, Ellington AD. Deoxyribozymes that recode sequence information. Nucleic Acids Research. 34: 2166-72. PMID 16648360 DOI: 10.1093/Nar/Gkl176  1
2006 Chu TC, Shieh F, Lavery LA, Levy M, Richards-Kortum R, Korgel BA, Ellington AD. Labeling tumor cells with fluorescent nanocrystal-aptamer bioconjugates. Biosensors & Bioelectronics. 21: 1859-66. PMID 16495043 DOI: 10.1016/J.Bios.2005.12.015  1
2005 Levskaya A, Chevalier AA, Tabor JJ, Simpson ZB, Lavery LA, Levy M, Davidson EA, Scouras A, Ellington AD, Marcotte EM, Voigt CA. Synthetic biology: engineering Escherichia coli to see light. Nature. 438: 441-2. PMID 16306980 DOI: 10.1038/Nature04405  1
2005 Levy M, Cater SF, Ellington AD. Quantum-dot aptamer beacons for the detection of proteins. Chembiochem : a European Journal of Chemical Biology. 6: 2163-6. PMID 16254932 DOI: 10.1002/Cbic.200500218  1
2005 Pai S, Ellington AD, Levy M. Proximity ligation assays with peptide conjugate 'burrs' for the sensitive detection of spores. Nucleic Acids Research. 33: e162. PMID 16237122 DOI: 10.1093/Nar/Gni150  1
2005 Levy M, Griswold KE, Ellington AD. Direct selection of trans-acting ligase ribozymes by in vitro compartmentalization. Rna (New York, N.Y.). 11: 1555-62. PMID 16131588 DOI: 10.1261/Rna.2121705  1
2005 Cho EJ, Yang L, Levy M, Ellington AD. Using a deoxyribozyme ligase and rolling circle amplification to detect a non-nucleic acid analyte, ATP. Journal of the American Chemical Society. 127: 2022-3. PMID 15713061 DOI: 10.1021/Ja043490U  1
2005 Collett JR, Cho EJ, Lee JF, Levy M, Hood AJ, Wan C, Ellington AD. Functional RNA microarrays for high-throughput screening of antiprotein aptamers. Analytical Biochemistry. 338: 113-23. PMID 15707941 DOI: 10.1016/J.Ab.2004.11.027  1
2004 Hughes RA, Robertson MP, Ellington AD, Levy M. The importance of prebiotic chemistry in the RNA world. Current Opinion in Chemical Biology. 8: 629-33. PMID 15556407 DOI: 10.1016/J.Cbpa.2004.09.007  1
2003 Levy M, Ellington AD. Exponential growth by cross-catalytic cleavage of deoxyribozymogens. Proceedings of the National Academy of Sciences of the United States of America. 100: 6416-21. PMID 12743371 DOI: 10.1073/Pnas.1130145100  1
2003 Levy M, Ellington AD. Peptide-templated nucleic acid ligation. Journal of Molecular Evolution. 56: 607-15. PMID 12698297 DOI: 10.1007/S00239-002-2429-7  1
2002 Levy M, Ellington AD. ATP-dependent allosteric DNA enzymes. Chemistry & Biology. 9: 417-26. PMID 11983331 DOI: 10.1016/S1074-5521(02)00123-0  1
2002 Levy M, Ellington AD. In vitro selection of a deoxyribozyme that can utilize multiple substrates. Journal of Molecular Evolution. 54: 180-90. PMID 11821911 DOI: 10.1007/S00239-001-0066-1  1
2001 Sooter LJ, Riedel T, Davidson EA, Levy M, Cox JC, Ellington AD. Toward automated nucleic acid enzyme selection. Biological Chemistry. 382: 1327-34. PMID 11688716 DOI: 10.1515/Bc.2001.165  1
2001 Levy M, Ellington AD. Selection of deoxyribozyme ligases that catalyze the formation of an unnatural internucleotide linkage. Bioorganic & Medicinal Chemistry. 9: 2581-7. PMID 11557346 DOI: 10.1016/S0968-0896(01)00033-5  1
2001 Levy M, Ellington AD. RNA world: catalysis abets binding, but not vice versa. Current Biology : Cb. 11: R665-7. PMID 11525762 DOI: 10.1016/S0960-9822(01)00388-8  1
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