| Year |
Citation |
Score |
| 2023 |
Saleh S, Farabaugh PJ. Post-transcriptional modification to the core of tRNAs modulates translational misreading errors. Rna (New York, N.Y.). PMID 37907335 DOI: 10.1261/rna.079797.123 |
0.454 |
|
| 2018 |
Joshi K, Cao L, Farabaugh PJ. The problem of genetic code misreading during protein synthesis. Yeast (Chichester, England). PMID 30557461 DOI: 10.1002/Yea.3374 |
0.511 |
|
| 2018 |
Joshi K, Bhatt MJ, Farabaugh PJ. Codon-specific effects of tRNA anticodon loop modifications on translational misreading errors in the yeast Saccharomyces cerevisiae. Nucleic Acids Research. PMID 30060218 DOI: 10.1093/Nar/Gky664 |
0.46 |
|
| 2015 |
Manickam N, Joshi K, Bhatt MJ, Farabaugh PJ. Effects of tRNA modification on translational accuracy depend on intrinsic codon-anticodon strength. Nucleic Acids Research. PMID 26704976 DOI: 10.1093/Nar/Gkv1506 |
0.767 |
|
| 2015 |
Suresh S, Ahn HW, Joshi K, Dakshinamurthy A, Kananganat A, Garfinkel DJ, Farabaugh PJ. Ribosomal protein and biogenesis factors affect multiple steps during movement of the Saccharomyces cerevisiae Ty1 retrotransposon. Mobile Dna. 6: 22. PMID 26664557 DOI: 10.1186/S13100-015-0053-5 |
0.484 |
|
| 2015 |
Nord S, Bhatt MJ, Tükenmez H, Farabaugh PJ, Wikström PM. Mutations of ribosomal protein S5 suppress a defect in late-30S ribosomal subunit biogenesis caused by lack of the RbfA biogenesis factor. Rna (New York, N.Y.). 21: 1454-68. PMID 26089326 DOI: 10.1261/Rna.051383.115 |
0.418 |
|
| 2015 |
Lamichhane TN, Blewett NH, Crawford AK, Cherkasova VA, Iben JR, Begley TJ, Farabaugh PJ, Maraia RJ. Erratum for Lamichhane et al., lack of tRNA modification isopentenyl-A37 alters mRNA decoding and causes metabolic deficiencies in fission yeast. Molecular and Cellular Biology. 35: 1477. PMID 25805774 DOI: 10.1128/Mcb.00170-15 |
0.327 |
|
| 2014 |
Ribas de Pouplana L, Santos MA, Zhu JH, Farabaugh PJ, Javid B. Protein mistranslation: friend or foe? Trends in Biochemical Sciences. 39: 355-62. PMID 25023410 DOI: 10.1016/J.Tibs.2014.06.002 |
0.439 |
|
| 2014 |
Manickam N, Nag N, Abbasi A, Patel K, Farabaugh PJ. Studies of translational misreading in vivo show that the ribosome very efficiently discriminates against most potential errors. Rna (New York, N.Y.). 20: 9-15. PMID 24249223 DOI: 10.1261/Rna.039792.113 |
0.754 |
|
| 2013 |
Lamichhane TN, Blewett NH, Crawford AK, Cherkasova VA, Iben JR, Begley TJ, Farabaugh PJ, Maraia RJ. Lack of tRNA modification isopentenyl-A37 alters mRNA decoding and causes metabolic deficiencies in fission yeast. Molecular and Cellular Biology. 33: 2918-29. PMID 23716598 DOI: 10.1128/Mcb.00278-13 |
0.508 |
|
| 2011 |
Türkel S, Kaplan G, Farabaugh PJ. Glucose signalling pathway controls the programmed ribosomal frameshift efficiency in retroviral-like element Ty3 in Saccharomyces cerevisiae. Yeast (Chichester, England). 28: 799-808. PMID 21989811 DOI: 10.1002/Yea.1906 |
0.378 |
|
| 2010 |
Kramer EB, Vallabhaneni H, Mayer LM, Farabaugh PJ. A comprehensive analysis of translational missense errors in the yeast Saccharomyces cerevisiae. Rna (New York, N.Y.). 16: 1797-808. PMID 20651030 DOI: 10.1261/Rna.2201210 |
0.774 |
|
| 2010 |
Dakshinamurthy A, Nyswaner KM, Farabaugh PJ, Garfinkel DJ. BUD22 affects Ty1 retrotransposition and ribosome biogenesis in Saccharomyces cerevisiae. Genetics. 185: 1193-205. PMID 20498295 DOI: 10.1534/Genetics.110.119115 |
0.399 |
|
| 2009 |
Vallabhaneni H, Farabaugh PJ. Accuracy modulating mutations of the ribosomal protein S4-S5 interface do not necessarily destabilize the rps4-rps5 protein-protein interaction. Rna (New York, N.Y.). 15: 1100-9. PMID 19386726 DOI: 10.1261/Rna.1530509 |
0.8 |
|
| 2009 |
Vallabhaneni H, Fan-Minogue H, Bedwell DM, Farabaugh PJ. Connection between stop codon reassignment and frequent use of shifty stop frameshifting. Rna (New York, N.Y.). 15: 889-97. PMID 19329535 DOI: 10.1261/Rna.1508109 |
0.794 |
|
| 2007 |
Guarraia C, Norris L, Raman A, Farabaugh PJ. Saturation mutagenesis of a +1 programmed frameshift-inducing mRNA sequence derived from a yeast retrotransposon. Rna (New York, N.Y.). 13: 1940-7. PMID 17881742 DOI: 10.1261/Rna.735107 |
0.789 |
|
| 2007 |
Taliaferro DL, Farabaugh PJ. Testing constraints on rRNA bases that make nonsequence-specific contacts with the codon-anticodon complex in the ribosomal A site. Rna (New York, N.Y.). 13: 1279-86. PMID 17592040 DOI: 10.1261/Rna.552007 |
0.77 |
|
| 2007 |
Taliaferro D, Farabaugh PJ. An mRNA sequence derived from the yeast EST3 gene stimulates programmed +1 translational frameshifting. Rna (New York, N.Y.). 13: 606-13. PMID 17329356 DOI: 10.1261/Rna.412707 |
0.807 |
|
| 2007 |
Kramer EB, Farabaugh PJ. The frequency of translational misreading errors in E. coli is largely determined by tRNA competition. Rna (New York, N.Y.). 13: 87-96. PMID 17095544 DOI: 10.1261/Rna.294907 |
0.775 |
|
| 2006 |
Farabaugh PJ, Kramer E, Vallabhaneni H, Raman A. Evolution of +1 programmed frameshifting signals and frameshift-regulating tRNAs in the order Saccharomycetales. Journal of Molecular Evolution. 63: 545-61. PMID 16838213 DOI: 10.1007/S00239-005-0311-0 |
0.813 |
|
| 2006 |
Raman A, Guarraia C, Taliaferro D, Stahl G, Farabaugh PJ. An mRNA sequence derived from a programmed frameshifting signal decreases codon discrimination during translation initiation. Rna (New York, N.Y.). 12: 1154-60. PMID 16682566 DOI: 10.1261/Rna.13306 |
0.71 |
|
| 2006 |
Salas-Marco J, Fan-Minogue H, Kallmeyer AK, Klobutcher LA, Farabaugh PJ, Bedwell DM. Distinct paths to stop codon reassignment by the variant-code organisms Tetrahymena and Euplotes. Molecular and Cellular Biology. 26: 438-47. PMID 16382136 DOI: 10.1128/Mcb.26.2.438-447.2006 |
0.4 |
|
| 2005 |
KLOBUTCHER LA, MOLLENBECK M, GAVIN MC, FARABAUGH PJ. A high percentage of Euplotes genes require a +1 translational frameshift for expression The Journal of Eukaryotic Microbiology. 52: 7S-27S. DOI: 10.1111/J.1550-7408.2005.05202003_1_42.X |
0.418 |
|
| 2004 |
Stahl G, Salem SN, Chen L, Zhao B, Farabaugh PJ. Translational accuracy during exponential, postdiauxic, and stationary growth phases in Saccharomyces cerevisiae. Eukaryotic Cell. 3: 331-8. PMID 15075263 DOI: 10.1128/Ec.3.2.331-338.2004 |
0.511 |
|
| 2003 |
Urbonavicius J, Stahl G, Durand JM, Ben Salem SN, Qian Q, Farabaugh PJ, Björk GR. Transfer RNA modifications that alter +1 frameshifting in general fail to affect -1 frameshifting. Rna (New York, N.Y.). 9: 760-8. PMID 12756333 |
0.428 |
|
| 2002 |
Klobutcher LA, Farabaugh PJ. Shifty ciliates: frequent programmed translational frameshifting in euplotids. Cell. 111: 763-6. PMID 12526802 DOI: 10.1016/S0092-8674(02)01138-8 |
0.413 |
|
| 2002 |
Stahl G, McCarty GP, Farabaugh PJ. Ribosome structure: revisiting the connection between translational accuracy and unconventional decoding. Trends in Biochemical Sciences. 27: 178-83. PMID 11943544 DOI: 10.1016/S0968-0004(02)02064-9 |
0.602 |
|
| 2001 |
Stahl G, Ben Salem S, Li Z, McCarty G, Raman A, Shah M, Farabaugh PJ. Programmed +1 translational frameshifting in the yeast Saccharomyces cerevisiae results from disruption of translational error correction. Cold Spring Harbor Symposia On Quantitative Biology. 66: 249-58. PMID 12762026 DOI: 10.1101/Sqb.2001.66.249 |
0.671 |
|
| 2001 |
Li Z, Stahl G, Farabaugh PJ. Programmed +1 frameshifting stimulated by complementarity between a downstream mRNA sequence and an error-correcting region of rRNA. Rna (New York, N.Y.). 7: 275-84. PMID 11233984 DOI: 10.1017/S135583820100190X |
0.729 |
|
| 2001 |
Stahl G, Bidou L, Hatin I, Namy O, Rousset JP, Farabaugh P. The case against the involvement of the NMD proteins in programmed frameshifting. Rna (New York, N.Y.). 6: 1687-8. PMID 11142367 DOI: 10.1017/S1355838200001874 |
0.423 |
|
| 2000 |
Bidou L, Stahl G, Hatin I, Namy O, Rousset JP, Farabaugh PJ. Nonsense-mediated decay mutants do not affect programmed -1 frameshifting. Rna (New York, N.Y.). 6: 952-61. PMID 10917592 DOI: 10.1017/S1355838200000443 |
0.531 |
|
| 2000 |
Farabaugh PJ. Translational frameshifting: implications for the mechanism of translational frame maintenance. Progress in Nucleic Acid Research and Molecular Biology. 64: 131-70. PMID 10697409 DOI: 10.1016/S0079-6603(00)64004-7 |
0.646 |
|
| 2000 |
Farabaugh PJ, Qian Q, Stahl G. 25 Programmed Translational Frameshifting, Hopping, and Readthrough of Termination Codons Cold Spring Harbor Monograph Archive. 39: 741-761. DOI: 10.1101/087969618.39.741 |
0.568 |
|
| 1999 |
Sundararajan A, Michaud WA, Qian Q, Stahl G, Farabaugh PJ. Near-cognate peptidyl-tRNAs promote +1 programmed translational frameshifting in yeast. Molecular Cell. 4: 1005-15. PMID 10635325 DOI: 10.1016/S1097-2765(00)80229-4 |
0.733 |
|
| 1999 |
Burck CL, Chernoff YO, Liu R, Farabaugh PJ, Liebman SW. Translational suppressors and antisuppressors alter the efficiency of the Ty1 programmed translational frameshift. Rna (New York, N.Y.). 5: 1451-7. PMID 10580473 DOI: 10.1017/S1355838299990490 |
0.485 |
|
| 1999 |
Farabaugh PJ, Björk GR. How translational accuracy influences reading frame maintenance. The Embo Journal. 18: 1427-34. PMID 10075915 DOI: 10.1093/Emboj/18.6.1427 |
0.585 |
|
| 1999 |
Vimaladithan A, Farabaugh PJ. Identification and analysis of frameshift sites. Methods in Molecular Biology (Clifton, N.J.). 77: 399-411. PMID 9770684 DOI: 10.1385/0-89603-397-X:399 |
0.328 |
|
| 1998 |
Qian Q, Li JN, Zhao H, Hagervall TG, Farabaugh PJ, Björk GR. A new model for phenotypic suppression of frameshift mutations by mutant tRNAs. Molecular Cell. 1: 471-82. PMID 9660932 DOI: 10.1016/S1097-2765(00)80048-9 |
0.467 |
|
| 1997 |
Türkel S, Liao XB, Farabaugh PJ. GCR1-dependent transcriptional activation of yeast retrotransposon Ty2-917. Yeast (Chichester, England). 13: 917-30. PMID 9271107 DOI: 10.1002/(Sici)1097-0061(199708)13:10<917::Aid-Yea148>3.0.Co;2-G |
0.39 |
|
| 1997 |
Farabaugh PJ. Programmed translational frameshifting. Annual Review of Genetics. 30: 507-28. PMID 8982463 DOI: 10.1146/Annurev.Genet.30.1.507 |
0.576 |
|
| 1995 |
Pande S, Vimaladithan A, Zhao H, Farabaugh PJ. Pulling the ribosome out of frame by +1 at a programmed frameshift site by cognate binding of aminoacyl-tRNA. Molecular and Cellular Biology. 15: 298-304. PMID 7799937 DOI: 10.1128/Mcb.15.1.298 |
0.529 |
|
| 1994 |
Vimaladithan A, Farabaugh PJ. Special peptidyl-tRNA molecules can promote translational frameshifting without slippage. Molecular and Cellular Biology. 14: 8107-16. PMID 7969148 DOI: 10.1128/Mcb.14.12.8107 |
0.568 |
|
| 1993 |
Türkel S, Farabaugh PJ. Interspersion of an unusual GCN4 activation site with a complex transcriptional repression site in Ty2 elements of Saccharomyces cerevisiae. Molecular and Cellular Biology. 13: 2091-103. PMID 8384304 DOI: 10.1128/Mcb.13.4.2091 |
0.37 |
|
| 1993 |
Farabaugh PJ, Vimaladithan A, Türkel S, Johnson R, Zhao H. Three downstream sites repress transcription of a Ty2 retrotransposon in Saccharomyces cerevisiae. Molecular and Cellular Biology. 13: 2081-90. PMID 8384303 DOI: 10.1128/Mcb.13.4.2081 |
0.371 |
|
| 1993 |
Farabaugh PJ, Zhao H, Vimaladithan A. A novel programed frameshift expresses the POL3 gene of retrotransposon Ty3 of yeast: frameshifting without tRNA slippage. Cell. 74: 93-103. PMID 8267715 DOI: 10.1016/0092-8674(93)90297-4 |
0.567 |
|
| 1990 |
Farabaugh P, Liao XB, Belcourt M, Zhao H, Kapakos J, Clare J. Enhancer and silencerlike sites within the transcribed portion of a Ty2 transposable element of Saccharomyces cerevisiae. Molecular and Cellular Biology. 9: 4824-34. PMID 2481227 DOI: 10.1128/Mcb.9.11.4824 |
0.432 |
|
| 1990 |
Belcourt MF, Farabaugh PJ. Ribosomal frameshifting in the yeast retrotransposon Ty: tRNAs induce slippage on a 7 nucleotide minimal site. Cell. 62: 339-52. PMID 2164889 DOI: 10.1016/0092-8674(90)90371-K |
0.566 |
|
| 1990 |
Axelrod NJ, Carmichael GG, Farabaugh PJ. Enhancer and promoter elements from simian virus 40 and polyomavirus can substitute for an upstream activation sequence in Saccharomyces cerevisiae. Molecular and Cellular Biology. 10: 947-57. PMID 2154686 DOI: 10.1128/mcb.10.3.947-957.1990 |
0.426 |
|
| 1988 |
Clare JJ, Belcourt M, Farabaugh PJ. Efficient translational frameshifting occurs within a conserved sequence of the overlap between the two genes of a yeast Ty1 transposon Proceedings of the National Academy of Sciences of the United States of America. 85: 6816-6820. PMID 2842793 DOI: 10.1073/Pnas.85.18.6816 |
0.474 |
|
| 1988 |
Liao XB, Clare JJ, Farabaugh PJ. The upstream activation site of a Ty2 element of yeast is necessary but not sufficient to promote maximal transcription of the element. Proceedings of the National Academy of Sciences of the United States of America. 84: 8520-4. PMID 2825192 DOI: 10.1073/Pnas.84.23.8520 |
0.415 |
|
| 1985 |
Clare J, Farabaugh P. Nucleotide sequence of a yeast Ty element: Evidence for an unusual mechanism of gene expression Proceedings of the National Academy of Sciences of the United States of America. 82: 2829-2833. PMID 2581255 DOI: 10.1073/Pnas.82.9.2829 |
0.469 |
|
| 1982 |
Donahue TF, Farabaugh PJ, Fink GR. The nucleotide sequence of the HIS4 region of yeast Gene. 18: 47-59. PMID 7049842 DOI: 10.1016/0378-1119(82)90055-5 |
0.497 |
|
| 1981 |
Donahue TF, Farabaugh PJ, Fink GR. Suppressible four-base glycine and proline codons in yeast Science. 212: 455-457. PMID 7010605 DOI: 10.1126/Science.7010605 |
0.393 |
|
| 1980 |
Roeder GS, Farabaugh PJ, Chaleff DT, Fink GR. The origins of gene instability in yeast. Science (New York, N.Y.). 209: 1375-80. PMID 6251544 DOI: 10.1126/Science.6251544 |
0.35 |
|
| 1980 |
Farabaugh PJ, Fink GR. Insertion of the eukaryotic transposable element Ty1 creates a 5-base pair duplication. Nature. 286: 352-6. PMID 6250062 DOI: 10.1038/286352A0 |
0.359 |
|
| 1979 |
Farabaugh PJ, Schmeissner U, Hofer M, Miller JH. Genetic studies of the lac repressor. VII. On the molecular nature of spontaneous hotspots in the lacI gene of Escherichia coli. Journal of Molecular Biology. 126: 847-57. PMID 370408 DOI: 10.1016/0022-2836(78)90023-2 |
0.385 |
|
| 1978 |
Miller JH, Coulondre C, Farabaugh PJ. Correlation of nonsense sites in the lacI gene with specific codons in the nucleotide sequence. Nature. 274: 770-5. PMID 355892 DOI: 10.1038/274770A0 |
0.472 |
|
| 1978 |
Farabaugh PJ. Sequence of the lacI gene. Nature. 274: 765-9. PMID 355891 DOI: 10.1038/274765A0 |
0.418 |
|
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