| Year |
Citation |
Score |
| 2019 |
Talkish J, Igel H, Perriman RJ, Shiue L, Katzman S, Munding EM, Shelansky R, Donohue JP, Ares M. Rapidly evolving protointrons in Saccharomyces genomes revealed by a hungry spliceosome. Plos Genetics. 15: e1008249. PMID 31437148 DOI: 10.1371/Journal.Pgen.1008249 |
0.593 |
|
| 2018 |
Lucas BA, Lavi E, Shiue L, Cho H, Katzman S, Miyoshi K, Siomi MC, Carmel L, Ares M, Maquat LE. Evidence for convergent evolution of SINE-directed Staufen-mediated mRNA decay. Proceedings of the National Academy of Sciences of the United States of America. PMID 29339519 DOI: 10.1073/Pnas.1715531115 |
0.508 |
|
| 2017 |
Fagg WS, Liu N, Fair JH, Shiue L, Katzman S, Donohue JP, Ares M. Autogenous cross-regulation of Quaking mRNA processing and translation balances Quaking functions in splicing and translation. Genes & Development. PMID 29021242 DOI: 10.1101/Gad.302059.117 |
0.546 |
|
| 2016 |
Batra R, Stark TJ, Clark E, Belzile JP, Wheeler EC, Yee BA, Huang H, Gelboin-Burkhart C, Huelga SC, Aigner S, Roberts BT, Bos TJ, Sathe S, Donohue JP, Rigo F, ... Ares M, et al. RNA-binding protein CPEB1 remodels host and viral RNA landscapes. Nature Structural & Molecular Biology. PMID 27775709 DOI: 10.1038/Nsmb.3310 |
0.301 |
|
| 2016 |
Kapeli K, Pratt GA, Vu AQ, Hutt KR, Martinez FJ, Sundararaman B, Batra R, Freese P, Lambert NJ, Huelga SC, Chun SJ, Liang TY, Chang J, Donohue JP, Shiue L, ... Ares M, et al. Distinct and shared functions of ALS-associated proteins TDP-43, FUS and TAF15 revealed by multisystem analyses. Nature Communications. 7: 12143. PMID 27378374 DOI: 10.1038/Ncomms12143 |
0.311 |
|
| 2016 |
Johnson TL, Ares M. SMITten by the Speed of Splicing. Cell. 165: 265-7. PMID 27058658 DOI: 10.1016/J.Cell.2016.03.035 |
0.409 |
|
| 2016 |
de Bruin RG, Shiue L, Prins J, de Boer HC, Singh A, Fagg WS, van Gils JM, Duijs JM, Katzman S, Kraaijeveld AO, Böhringer S, Leung WY, Kielbasa SM, Donahue JP, van der Zande PH, ... ... Ares M, et al. Quaking promotes monocyte differentiation into pro-atherogenic macrophages by controlling pre-mRNA splicing and gene expression. Nature Communications. 7: 10846. PMID 27029405 DOI: 10.1038/Ncomms10846 |
0.349 |
|
| 2016 |
De la Cruz MA, Morgan JK, Ares MA, Yáñez-Santos JA, Riordan JT, Girón JA. The Two-Component System CpxRA Negatively Regulates the Locus of Enterocyte Effacement of Enterohemorrhagic Escherichia coli Involving σ(32) and Lon protease. Frontiers in Cellular and Infection Microbiology. 6: 11. PMID 26904510 DOI: 10.3389/fcimb.2016.00011 |
0.38 |
|
| 2014 |
Ares M. Methods for processing high-throughput RNA sequencing data. Cold Spring Harbor Protocols. 2014: 1139-48. PMID 25368318 DOI: 10.1101/Pdb.Top083352 |
0.304 |
|
| 2014 |
Fu XD, Ares M. Context-dependent control of alternative splicing by RNA-binding proteins. Nature Reviews. Genetics. 15: 689-701. PMID 25112293 DOI: 10.1038/Nrg3778 |
0.429 |
|
| 2014 |
Paz I, Kosti I, Ares M, Cline M, Mandel-Gutfreund Y. RBPmap: a web server for mapping binding sites of RNA-binding proteins. Nucleic Acids Research. 42: W361-7. PMID 24829458 DOI: 10.1093/Nar/Gku406 |
0.33 |
|
| 2014 |
Ares M. Methods for processing microarray data. Cold Spring Harbor Protocols. 2014: 225-9. PMID 24492782 DOI: 10.1101/Pdb.Prot080507 |
0.324 |
|
| 2014 |
Ares M. Microarray slide hybridization using fluorescently labeled cDNA. Cold Spring Harbor Protocols. 2014: 124-9. PMID 24371320 DOI: 10.1101/Pdb.Prot080135 |
0.309 |
|
| 2013 |
Nilsen TW, Rio DC, Ares M. High-yield synthesis of RNA using T7 RNA polymerase and plasmid DNA or oligonucleotide templates. Cold Spring Harbor Protocols. 2013. PMID 24184762 DOI: 10.1101/Pdb.Prot078535 |
0.327 |
|
| 2013 |
Munding EM, Shiue L, Katzman S, Donohue JP, Ares M. Competition between pre-mRNAs for the splicing machinery drives global regulation of splicing. Molecular Cell. 51: 338-48. PMID 23891561 DOI: 10.1016/J.Molcel.2013.06.012 |
0.596 |
|
| 2013 |
Ares M. Fragmentation of whole-transcriptome RNA using E. coli RNase III. Cold Spring Harbor Protocols. 2013: 479-81. PMID 23637372 DOI: 10.1101/Pdb.Prot074369 |
0.331 |
|
| 2013 |
Pandit S, Zhou Y, Shiue L, Coutinho-Mansfield G, Li H, Qiu J, Huang J, Yeo GW, Ares M, Fu XD. Genome-wide analysis reveals SR protein cooperation and competition in regulated splicing. Molecular Cell. 50: 223-35. PMID 23562324 DOI: 10.1016/J.Molcel.2013.03.001 |
0.304 |
|
| 2013 |
Hall MP, Nagel RJ, Fagg WS, Shiue L, Cline MS, Perriman RJ, Donohue JP, Ares M. Quaking and PTB control overlapping splicing regulatory networks during muscle cell differentiation. Rna (New York, N.Y.). 19: 627-38. PMID 23525800 DOI: 10.1261/Rna.038422.113 |
0.444 |
|
| 2013 |
Pistoni M, Shiue L, Cline MS, Bortolanza S, Neguembor MV, Xynos A, Ares M, Gabellini D. Rbfox1 downregulation and altered calpain 3 splicing by FRG1 in a mouse model of Facioscapulohumeral muscular dystrophy (FSHD). Plos Genetics. 9: e1003186. PMID 23300487 DOI: 10.1371/Journal.Pgen.1003186 |
0.335 |
|
| 2012 |
Beuck C, Qu S, Fagg WS, Ares M, Williamson JR. Structural analysis of the quaking homodimerization interface. Journal of Molecular Biology. 423: 766-81. PMID 22982292 DOI: 10.1016/J.Jmb.2012.08.027 |
0.36 |
|
| 2012 |
Charizanis K, Lee KY, Batra R, Goodwin M, Zhang C, Yuan Y, Shiue L, Cline M, Scotti MM, Xia G, Kumar A, Ashizawa T, Clark HB, Kimura T, Takahashi MP, ... ... Ares M, et al. Muscleblind-like 2-mediated alternative splicing in the developing brain and dysregulation in myotonic dystrophy. Neuron. 75: 437-50. PMID 22884328 DOI: 10.1016/J.Neuron.2012.05.029 |
0.304 |
|
| 2012 |
Huelga SC, Vu AQ, Arnold JD, Liang TY, Liu PP, Yan BY, Donohue JP, Shiue L, Hoon S, Brenner S, Ares M, Yeo GW. Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins. Cell Reports. 1: 167-78. PMID 22574288 DOI: 10.1016/J.Celrep.2012.02.001 |
0.4 |
|
| 2012 |
Gehman LT, Meera P, Stoilov P, Shiue L, O'Brien JE, Meisler MH, Ares M, Otis TS, Black DL. The splicing regulator Rbfox2 is required for both cerebellar development and mature motor function. Genes & Development. 26: 445-60. PMID 22357600 DOI: 10.1101/Gad.182477.111 |
0.327 |
|
| 2011 |
Mishra SK, Ammon T, Popowicz GM, Krajewski M, Nagel RJ, Ares M, Holak TA, Jentsch S. Role of the ubiquitin-like protein Hub1 in splice-site usage and alternative splicing. Nature. 474: 173-8. PMID 21614000 DOI: 10.1038/Nature10143 |
0.409 |
|
| 2010 |
Munding EM, Igel AH, Shiue L, Dorighi KM, Treviño LR, Ares M. Integration of a splicing regulatory network within the meiotic gene expression program of Saccharomyces cerevisiae. Genes & Development. 24: 2693-704. PMID 21123654 DOI: 10.1101/Gad.1977410 |
0.591 |
|
| 2010 |
Rio DC, Ares M, Hannon GJ, Nilsen TW. Enrichment of poly(A)+ mRNA using immobilized oligo(dT). Cold Spring Harbor Protocols. 2010: pdb.prot5454. PMID 20647358 DOI: 10.1101/Pdb.Prot5454 |
0.35 |
|
| 2010 |
Rio DC, Ares M, Hannon GJ, Nilsen TW. Removal of ribosomal subunits (and rRNA) from cytoplasmic extracts before solubilization with SDS and deproteinization. Cold Spring Harbor Protocols. 2010: pdb.prot5442. PMID 20516180 DOI: 10.1101/Pdb.Prot5442 |
0.315 |
|
| 2010 |
Perriman R, Ares M. Invariant U2 snRNA nucleotides form a stem loop to recognize the intron early in splicing. Molecular Cell. 38: 416-27. PMID 20471947 DOI: 10.1016/J.Molcel.2010.02.036 |
0.344 |
|
| 2010 |
Du H, Cline MS, Osborne RJ, Tuttle DL, Clark TA, Donohue JP, Hall MP, Shiue L, Swanson MS, Thornton CA, Ares M. Aberrant alternative splicing and extracellular matrix gene expression in mouse models of myotonic dystrophy. Nature Structural & Molecular Biology. 17: 187-93. PMID 20098426 DOI: 10.1038/Nsmb.1720 |
0.446 |
|
| 2009 |
Chawla G, Lin CH, Han A, Shiue L, Ares M, Black DL. Sam68 regulates a set of alternatively spliced exons during neurogenesis. Molecular and Cellular Biology. 29: 201-13. PMID 18936165 DOI: 10.1128/Mcb.01349-08 |
0.399 |
|
| 2008 |
Lauriat TL, Shiue L, Haroutunian V, Verbitsky M, Ares M, Ospina L, McInnes LA. Developmental expression profile of quaking, a candidate gene for schizophrenia, and its target genes in human prefrontal cortex and hippocampus shows regional specificity. Journal of Neuroscience Research. 86: 785-96. PMID 17918747 DOI: 10.1002/Jnr.21534 |
0.325 |
|
| 2007 |
Chakrabarti K, Pearson M, Grate L, Sterne-Weiler T, Deans J, Donohue JP, Ares M. Structural RNAs of known and unknown function identified in malaria parasites by comparative genomics and RNA analysis. Rna (New York, N.Y.). 13: 1923-39. PMID 17901154 DOI: 10.1261/Rna.751807 |
0.413 |
|
| 2007 |
Boutz PL, Stoilov P, Li Q, Lin CH, Chawla G, Ostrow K, Shiue L, Ares M, Black DL. A post-transcriptional regulatory switch in polypyrimidine tract-binding proteins reprograms alternative splicing in developing neurons. Genes & Development. 21: 1636-52. PMID 17606642 DOI: 10.1101/Gad.1558107 |
0.366 |
|
| 2007 |
Ni JZ, Grate L, Donohue JP, Preston C, Nobida N, O'Brien G, Shiue L, Clark TA, Blume JE, Ares M. Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay. Genes & Development. 21: 708-18. PMID 17369403 DOI: 10.1101/Gad.1525507 |
0.604 |
|
| 2007 |
Ares M. Sing the genome electric: excited cells adjust their splicing. Plos Biology. 5: e55. PMID 17298182 DOI: 10.1371/Journal.Pbio.0050055 |
0.532 |
|
| 2006 |
Davis CA, Ares M. Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 103: 3262-7. PMID 16484372 DOI: 10.1073/Pnas.0507783103 |
0.497 |
|
| 2006 |
Sugnet CW, Srinivasan K, Clark TA, O'Brien G, Cline MS, Wang H, Williams A, Kulp D, Blume JE, Haussler D, Ares M. Unusual intron conservation near tissue-regulated exons found by splicing microarrays. Plos Computational Biology. 2: e4. PMID 16424921 DOI: 10.1371/Journal.Pcbi.0020004 |
0.421 |
|
| 2006 |
Combs DJ, Nagel RJ, Ares M, Stevens SW. Prp43p is a DEAH-box spliceosome disassembly factor essential for ribosome biogenesis. Molecular and Cellular Biology. 26: 523-34. PMID 16382144 DOI: 10.1128/Mcb.26.2.523-534.2006 |
0.406 |
|
| 2005 |
Srinivasan K, Shiue L, Hayes JD, Centers R, Fitzwater S, Loewen R, Edmondson LR, Bryant J, Smith M, Rommelfanger C, Welch V, Clark TA, Sugnet CW, Howe KJ, Mandel-Gutfreund Y, ... Ares M, et al. Detection and measurement of alternative splicing using splicing-sensitive microarrays. Methods (San Diego, Calif.). 37: 345-59. PMID 16314264 DOI: 10.1016/J.Ymeth.2005.09.007 |
0.468 |
|
| 2005 |
Burckin T, Nagel R, Mandel-Gutfreund Y, Shiue L, Clark TA, Chong JL, Chang TH, Squazzo S, Hartzog G, Ares M. Exploring functional relationships between components of the gene expression machinery. Nature Structural & Molecular Biology. 12: 175-82. PMID 15702072 DOI: 10.1038/Nsmb891 |
0.493 |
|
| 2005 |
Ares M, Proudfoot NJ. The Spanish connection: Transcription and mRNA processing get even closer Cell. 120: 163-166. PMID 15680322 DOI: 10.1016/J.Cell.2005.01.002 |
0.415 |
|
| 2005 |
Robertson MP, Igel H, Baertsch R, Haussler D, Ares M, Scott WG. The structure of a rigorously conserved RNA element within the SARS virus genome. Plos Biology. 3: e5. PMID 15630477 DOI: 10.1371/Journal.Pbio.0030005 |
0.313 |
|
| 2004 |
Schattner P, Decatur WA, Davis CA, Ares M, Fournier MJ, Lowe TM. Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome. Nucleic Acids Research. 32: 4281-96. PMID 15306656 DOI: 10.1093/Nar/Gkh768 |
0.429 |
|
| 2004 |
Spingola M, Armisen J, Ares M. Mer1p is a modular splicing factor whose function depends on the conserved U2 snRNP protein Snu17p. Nucleic Acids Research. 32: 1242-50. PMID 14973223 DOI: 10.1093/Nar/Gkh281 |
0.342 |
|
| 2003 |
Howe KJ, Kane CM, Ares M. Perturbation of transcription elongation influences the fidelity of internal exon inclusion in Saccharomyces cerevisiae. Rna (New York, N.Y.). 9: 993-1006. PMID 12869710 DOI: 10.1261/Rna.5390803 |
0.508 |
|
| 2000 |
Spingola M, Ares M. A yeast intronic splicing enhancer and Nam8p are required for Mer1p-activated splicing. Molecular Cell. 6: 329-38. PMID 10983980 DOI: 10.1016/S1097-2765(00)00033-2 |
0.429 |
|
| 1998 |
Perriman R, Ares M. Circular mRNA can direct translation of extremely long repeating-sequence proteins in vivo. Rna (New York, N.Y.). 4: 1047-54. PMID 9740124 DOI: 10.1017/S135583829898061X |
0.321 |
|
| 1996 |
Elela SA, Igel H, Ares M. RNase III cleaves eukaryotic preribosomal RNA at a U3 snoRNP-dependent site. Cell. 85: 115-24. PMID 8620530 DOI: 10.1016/S0092-8674(00)81087-9 |
0.321 |
|
| 1995 |
Ares M, Weiser B. Rearrangement of snRNA structure during assembly and function of the spliceosome. Progress in Nucleic Acid Research and Molecular Biology. 50: 131-59. PMID 7754032 DOI: 10.1016/S0079-6603(08)60813-2 |
0.308 |
|
| 1992 |
Zavanelli MI, Ares M. Efficient association of U2 snRNPs with pre-mRNA requires an essential U2 RNA structural element. Genes & Development. 5: 2521-33. PMID 1752442 DOI: 10.1101/Gad.5.12B.2521 |
0.327 |
|
| 1988 |
Igel AH, Ares M. Internal sequences that distinguish yeast from metazoan U2 snRNA are unnecessary for pre-mRNA splicing. Nature. 334: 450-3. PMID 3043228 DOI: 10.1038/334450A0 |
0.362 |
|
| 1986 |
Ares M. U2 RNA from yeast is unexpectedly large and contains homology to vertebrate U4, U5, and U6 small nuclear RNAs. Cell. 47: 49-59. PMID 3530502 DOI: 10.1016/0092-8674(86)90365-X |
0.375 |
|
| 1985 |
Lindgren V, Ares M, Weiner AM, Francke U. Human genes for U2 small nuclear RNA map to a major adenovirus 12 modification site on chromosome 17 Nature. 314: 115-116. PMID 2579339 DOI: 10.1038/314115A0 |
0.346 |
|
| 1985 |
Yuo CY, Ares M, Weiner AM. Sequences required for 3′ end formation of human U2 small nuclear RNA Cell. 42: 193-202. PMID 2410138 DOI: 10.1016/S0092-8674(85)80115-X |
0.361 |
|
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