John Hickey - Publications

Affiliations: 
2006-2011 Molecular Biosciences University of Kansas, Lawrence, KS, United States 

8/209 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Lee SM, Hickey JM, Miura K, Joshi SB, Volkin DB, King CR, Plieskatt JL. A C-terminal Pfs48/45 malaria transmission-blocking vaccine candidate produced in the baculovirus expression system. Scientific Reports. 10: 395. PMID 31942034 DOI: 10.1038/S41598-019-57384-W  0.315
2015 Kemege KE, Hickey JM, Barta ML, Wickstrum J, Balwalli N, Lovell S, Battaile KP, Hefty PS. Chlamydia trachomatis protein CT009 is a structural and functional homolog to the key morphogenesis component RodZ and interacts with division septal plane localized MreB. Molecular Microbiology. 95: 365-82. PMID 25382739 DOI: 10.1111/Mmi.12855  0.476
2014 Barta ML, Hickey JM, Anbanandam A, Dyer K, Hammel M, Hefty PS. Atypical response regulator ChxR from Chlamydia trachomatis is structurally poised for DNA binding. Plos One. 9: e91760. PMID 24646934 DOI: 10.1371/Journal.Pone.0091760  0.763
2013 Barta ML, Hickey J, Kemege KE, Lovell S, Battaile KP, Hefty PS. Structure of CT584 from Chlamydia trachomatis refined to 3.05 Å resolution. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 69: 1196-201. PMID 24192348 DOI: 10.1107/S1744309113027371  0.716
2011 Kemege KE, Hickey JM, Lovell S, Battaile KP, Zhang Y, Hefty PS. Ab initio structural modeling of and experimental validation for Chlamydia trachomatis protein CT296 reveal structural similarity to Fe(II) 2-oxoglutarate-dependent enzymes. Journal of Bacteriology. 193: 6517-28. PMID 21965559 DOI: 10.1128/Jb.05488-11  0.771
2011 Hickey JM, Lovell S, Battaile KP, Hu L, Middaugh CR, Hefty PS. The atypical response regulator protein ChxR has structural characteristics and dimer interface interactions that are unique within the OmpR/PhoB subfamily. The Journal of Biological Chemistry. 286: 32606-16. PMID 21775428 DOI: 10.1074/jbc.M111.220574  0.717
2011 Hickey JM, Weldon L, Hefty PS. The atypical OmpR/PhoB response regulator ChxR from Chlamydia trachomatis forms homodimers in vivo and binds a direct repeat of nucleotide sequences. Journal of Bacteriology. 193: 389-98. PMID 21057008 DOI: 10.1128/JB.00833-10  0.666
2009 Hickey JM, Hefty PS, Lamb AL. Expression, purification, crystallization and preliminary X-ray analysis of the DNA-binding domain of a Chlamydia trachomatis OmpR/PhoB-subfamily response regulator homolog, ChxR Acta Crystallographica Section F: Structural Biology and Crystallization Communications. 65: 791-794. PMID 19652341 DOI: 10.1107/S1744309109025184  0.679
Low-probability matches (unlikely to be authored by this person)
2020 Kaur K, Xiong J, Sawant N, Agarwal S, Hickey JM, Holland DA, Mukhopadhyay TK, Brady JR, Dalvie NC, Tracey MK, Love KR, Love JC, Weis DD, Joshi SB, Volkin DB. Mechanism of thimerosal-induced structural destabilization of a recombinant rotavirus P[4] protein antigen formulated as a multi-dose vaccine. Journal of Pharmaceutical Sciences. PMID 33278412 DOI: 10.1016/j.xphs.2020.11.033  0.274
2019 Hu Y, Kumru OS, Xiong J, Antunez LR, Hickey J, Wang Y, Cavacini L, Klempner M, Joshi SB, Volkin DB. Preformulation Characterization and Stability Assessments of Secretory IgA Monoclonal Antibodies as Potential Candidates for Passive Immunization by Oral Administration. Journal of Pharmaceutical Sciences. PMID 31369743 DOI: 10.1016/J.Xphs.2019.07.018  0.269
2021 Baertsch MA, Nolan GP, Hickey JW. Multicellular modules as clinical diagnostic and therapeutic targets. Trends in Cancer. PMID 34872889 DOI: 10.1016/j.trecan.2021.11.004  0.262
2021 Hickey JW, Neumann EK, Radtke AJ, Camarillo JM, Beuschel RT, Albanese A, McDonough E, Hatler J, Wiblin AE, Fisher J, Croteau J, Small EC, Sood A, Caprioli RM, Angelo RM, et al. Spatial mapping of protein composition and tissue organization: a primer for multiplexed antibody-based imaging. Nature Methods. PMID 34811556 DOI: 10.1038/s41592-021-01316-y  0.255
2017 Toprani VM, Hickey JM, Sahni N, Toth RT, Robertson GA, Middaugh CR, Joshi SB, Volkin DB. Structural characterization and physicochemical stability profile of a double mutant heat labile toxin (dmLT) protein based adjuvant. Journal of Pharmaceutical Sciences. PMID 28780391 DOI: 10.1016/J.Xphs.2017.07.019  0.253
2018 Hickey JM, Toprani VM, Kaur K, Mishra RPN, Goel A, Oganesyan N, Lees A, Sitrin R, Joshi SB, Volkin DB. Analytical Comparability Assessments of Five Recombinant CRMProteins from Different Manufacturers and Expression Systems. Journal of Pharmaceutical Sciences. PMID 29526446 DOI: 10.1016/J.Xphs.2018.03.002  0.24
2017 Toprani VM, Sahni N, Hickey JM, Robertson GA, Middaugh CR, Joshi SB, Volkin DB. Development of a candidate stabilizing formulation for bulk storage of a double mutant heat labile toxin (dmLT) protein based adjuvant. Vaccine. PMID 28551040 DOI: 10.1016/J.Vaccine.2017.03.101  0.238
2018 Patel A, Gupta V, Hickey J, Nightlinger NS, Rogers RS, Siska C, Joshi SB, Seaman MS, Volkin DB, Kerwin BA. Co-formulation of broadly neutralizing antibodies 3BNC117 and PGT121: Analytical challenges during pre-formulation characterization and storage stability studies. Journal of Pharmaceutical Sciences. PMID 30176252 DOI: 10.1016/J.Xphs.2018.08.012  0.226
2017 Lee SM, Wu CK, Plieskatt JL, Miura K, Hickey JM, King CR. An N-terminal Pfs230 domain produced in baculovirus as a biological active transmission-blocking vaccine candidate. Clinical and Vaccine Immunology : Cvi. PMID 28747311 DOI: 10.1128/CVI.00140-17  0.226
2015 Arora J, Hickey JM, Majumdar R, Esfandiary R, Bishop SM, Samra HS, Middaugh CR, Weis DD, Volkin DB. Hydrogen exchange mass spectrometry reveals protein interfaces and distant dynamic coupling effects during the reversible self-association of an IgG1 monoclonal antibody. Mabs. 7: 525-39. PMID 25875351 DOI: 10.1080/19420862.2015.1029217  0.218
2010 Dawes MG, Kaczorowski J, Swanson G, Hickey J, Karwalajtys T. The effect of a patient education booklet and BP 'tracker' on knowledge about hypertension. A randomized controlled trial. Family Practice. 27: 472-8. PMID 20631056 DOI: 10.1093/Fampra/Cmq048  0.197
2023 Hickey JW, Becker WR, Nevins SA, Horning A, Perez AE, Zhu C, Zhu B, Wei B, Chiu R, Chen DC, Cotter DL, Esplin ED, Weimer AK, Caraccio C, Venkataraaman V, et al. Organization of the human intestine at single-cell resolution. Nature. 619: 572-584. PMID 37468586 DOI: 10.1038/s41586-023-05915-x  0.196
2016 Hickey JM, Sahni N, Chaudhuri R, D'Souza A, Metters A, Joshi SB, Russell Middaugh C, Volkin DB. Effect of acrylodan conjugation and forced oxidation on the structural integrity, conformational stability and binding activity of a glucose binding protein SM4 used in a prototype continuous glucose monitor. Protein Science : a Publication of the Protein Society. PMID 27997712 DOI: 10.1002/Pro.3102  0.191
2020 Sawant N, Kaur K, Holland DA, Hickey JM, Agarwal S, Brady JR, Dalvie NC, Tracey MK, Velez-Suberbie ML, Morris SA, Jacob SI, Bracewell DG, Mukhopadhyay TK, Love KR, Love JC, et al. Rapid developability assessments to formulate recombinant protein antigens as stable, low-cost, multi-dose vaccine candidates: Case-study with non-replicating rotavirus (NRRV) vaccine antigens. Journal of Pharmaceutical Sciences. PMID 33285182 DOI: 10.1016/j.xphs.2020.11.039  0.178
2010 Jin M, Szapiel N, Zhang J, Hickey J, Ghose S. Profiling of host cell proteins by two-dimensional difference gel electrophoresis (2D-DIGE): Implications for downstream process development. Biotechnology and Bioengineering. 105: 306-16. PMID 19739084 DOI: 10.1002/bit.22532  0.177
2021 Börner K, Teichmann SA, Quardokus EM, Gee JC, Browne K, Osumi-Sutherland D, Herr BW, Bueckle A, Paul H, Haniffa M, Jardine L, Bernard A, Ding SL, Miller JA, Lin S, ... ... Hickey J, et al. Anatomical structures, cell types and biomarkers of the Human Reference Atlas. Nature Cell Biology. 23: 1117-1128. PMID 34750582 DOI: 10.1038/s41556-021-00788-6  0.174
2013 Manikwar P, Majumdar R, Hickey JM, Thakkar SV, Samra HS, Sathish HA, Bishop SM, Middaugh CR, Weis DD, Volkin DB. Correlating excipient effects on conformational and storage stability of an IgG1 monoclonal antibody with local dynamics as measured by hydrogen/deuterium-exchange mass spectrometry. Journal of Pharmaceutical Sciences. 102: 2136-51. PMID 23620222 DOI: 10.1002/Jps.23543  0.169
2022 Brbić M, Cao K, Hickey JW, Tan Y, Snyder MP, Nolan GP, Leskovec J. Annotation of spatially resolved single-cell data with STELLAR. Nature Methods. 19: 1411-1418. PMID 36280720 DOI: 10.1038/s41592-022-01651-8  0.169
2023 Chen S, Zhu B, Huang S, Hickey JW, Lin KZ, Snyder M, Greenleaf WJ, Nolan GP, Zhang NR, Ma Z. Integration of spatial and single-cell data across modalities with weak linkage. Biorxiv : the Preprint Server For Biology. PMID 36711792 DOI: 10.1101/2023.01.12.523851  0.161
2019 Agarwal S, Hickey JM, Sahni N, Toth RT, Robertson GA, Sitrin R, Cryz S, Joshi SB, Volkin DB. Recombinant subunit rotavirus trivalent vaccine candidate: physicochemical comparisons and stability evaluations of three protein antigens. Journal of Pharmaceutical Sciences. PMID 31400347 DOI: 10.1016/J.Xphs.2019.08.002  0.161
2019 Agarwal S, Sahni N, Hickey JM, Robertson GA, Sitrin R, Cryz S, Joshi SB, Volkin DB. Characterizing and minimizing aggregation and particle formation of three recombinant fusion-protein bulk antigens for use in a candidate trivalent rotavirus vaccine. Journal of Pharmaceutical Sciences. PMID 31400346 DOI: 10.1016/J.Xphs.2019.08.001  0.16
2023 Chen S, Zhu B, Huang S, Hickey JW, Lin KZ, Snyder M, Greenleaf WJ, Nolan GP, Zhang NR, Ma Z. Integration of spatial and single-cell data across modalities with weakly linked features. Nature Biotechnology. PMID 37679544 DOI: 10.1038/s41587-023-01935-0  0.153
2019 Agarwal S, Hickey JM, McAdams D, White JA, Sitrin R, Khandke L, Cryz S, Joshi SB, Volkin DB. Effect of aluminum adjuvant and preservatives on structural integrity and physicochemical stability profiles of three recombinant subunit rotavirus vaccine antigens. Journal of Pharmaceutical Sciences. PMID 31589875 DOI: 10.1016/J.Xphs.2019.10.004  0.143
2022 Hickey JM, Jacob SI, Tait AS, Vahid FD, Barritt J, Rouse S, Douglas A, Joshi SB, Volkin DB, Bracewell DG. Measurement of Adenovirus-Based Vector Heterogeneity. Journal of Pharmaceutical Sciences. PMID 36563855 DOI: 10.1016/j.xphs.2022.12.012  0.142
2016 Xu F, Gonzalez-Escalona N, Haendiges J, Myers RA, Ferguson J, Stiles T, Hickey E, Moore M, Hickey JM, Schillaci C, Mank L, DeRosia-Banick K, Matluk N, Robbins A, Sebra RP, et al. Vibrio parahaemolyticus sequence type 631, an emerging foodborne pathogen in North America. Journal of Clinical Microbiology. PMID 27974540 DOI: 10.1128/Jcm.02162-16  0.139
2019 Johnsson M, Gaynor RC, Jenko J, Gorjanc G, de Koning DJ, Hickey JM. Removal of alleles by genome editing (RAGE) against deleterious load. Genetics, Selection, Evolution : Gse. 51: 14. PMID 30995904 DOI: 10.1186/S12711-019-0456-8  0.135
2012 Majumdar R, Manikwar P, Hickey JM, Arora J, Middaugh CR, Volkin DB, Weis DD. Minimizing carry-over in an online pepsin digestion system used for the H/D exchange mass spectrometric analysis of an IgG1 monoclonal antibody. Journal of the American Society For Mass Spectrometry. 23: 2140-8. PMID 22993047 DOI: 10.1007/S13361-012-0485-9  0.133
2021 Kennedy-Darling J, Bhate SS, Hickey JW, Black S, Barlow GL, Vazquez G, Venkataraaman VG, Samusik N, Goltsev Y, Schürch CM, Nolan GP. Highly multiplexed tissue imaging using repeated oligonucleotide exchange reaction. European Journal of Immunology. PMID 33548142 DOI: 10.1002/eji.202048891  0.133
2017 Sahni N, Chaudhuri R, Hickey JM, Manikwar P, D'Souza A, Metters A, Joshi SB, Middaugh CR, Volkin DB. Preformulation characterization, stabilization and formulation design for the acrylodan-labeled glucose binding protein SM4-AC. Journal of Pharmaceutical Sciences. PMID 28088457 DOI: 10.1016/J.Xphs.2017.01.004  0.129
2018 Johnsson M, Ros-Freixedes R, Gorjanc G, Campbell MA, Naswa S, Kelly K, Lightner J, Rounsley S, Hickey JM. Sequence variation, evolutionary constraint, and selection at the CD163 gene in pigs. Genetics, Selection, Evolution : Gse. 50: 69. PMID 30572815 DOI: 10.1186/S12711-018-0440-8  0.128
2023 Kumru OS, Sanyal M, Friedland N, Hickey J, Joshi R, Weidenbacher P, Do J, Cheng YC, Kim PS, Joshi SB, Volkin DB. Formulation development and comparability studies with an aluminum-salt adjuvanted SARS-CoV-2 Spike ferritin nanoparticle vaccine antigen produced from two different cell lines. Biorxiv : the Preprint Server For Biology. PMID 37066156 DOI: 10.1101/2023.04.03.535447  0.127
2023 Kumru OS, Sanyal M, Friedland N, Hickey JM, Joshi R, Weidenbacher P, Do J, Cheng YC, Kim PS, Joshi SB, Volkin DB. Formulation development and comparability studies with an aluminum-salt adjuvanted SARS-CoV-2 spike ferritin nanoparticle vaccine antigen produced from two different cell lines. Vaccine. PMID 37620203 DOI: 10.1016/j.vaccine.2023.08.037  0.126
2017 Toth R, Angalakurthi SK, Van Slyke G, Vance DJ, Hickey JM, Joshi SB, Middaugh CR, Volkin DB, Weis DD, Mantis NJ. High-Definition Mapping of Four Spatially Distinct Neutralizing Epitope Clusters on RiVax, a Candidate Ricin Toxin Subunit Vaccine. Clinical and Vaccine Immunology : Cvi. PMID 29046307 DOI: 10.1128/Cvi.00237-17  0.123
2023 Hickey JW, Haist M, Horowitz N, Caraccio C, Tan Y, Rech AJ, Baertsch MA, Rovira-Clavé X, Zhu B, Vazquez G, Barlow G, Agmon E, Goltsev Y, Sunwoo JB, Covert M, et al. T cell-mediated curation and restructuring of tumor tissue coordinates an effective immune response. Cell Reports. 42: 113494. PMID 38085642 DOI: 10.1016/j.celrep.2023.113494  0.121
2019 Hickey JW, Dong Y, Chung JW, Salathe SF, Pruitt HC, Li X, Chang C, Fraser AK, Bessell CA, Ewald AJ, Gerecht S, Mao HQ, Schneck JP. Engineering an Artificial T-Cell Stimulating Matrix for Immunotherapy. Advanced Materials (Deerfield Beach, Fla.). e1807359. PMID 30968468 DOI: 10.1002/Adma.201807359  0.121
2023 Hickey JW, Agmon E, Horowitz N, Lamore M, Sunwoo J, Covert M, Nolan GP. Integrating Multiplexed Imaging and Multiscale Modeling Identifies Tumor Phenotype Transformation as a Critical Component of Therapeutic T Cell Efficacy. Biorxiv : the Preprint Server For Biology. PMID 38106218 DOI: 10.1101/2023.12.06.570168  0.121
2024 Matusiak M, Hickey JW, van IJzendoorn DGP, Lu G, Kidzinski L, Zhu S, Colburg DRC, Luca B, Phillips DJ, Brubaker SW, Charville GW, Shen J, Loh KM, Okwan-Duodu DK, Nolan GP, et al. Spatially Segregated Macrophage Populations Predict Distinct Outcomes In Colon Cancer. Cancer Discovery. PMID 38552005 DOI: 10.1158/2159-8290.CD-23-1300  0.12
2021 Jiang S, Mukherjee N, Bennett RS, Chen H, Logue J, Dighero-Kemp B, Kurtz JR, Adams R, Phillips D, Schürch CM, Goltsev Y, Hickey JW, McCaffrey EF, Delmastro A, Chu P, et al. Rhesus Macaque CODEX Multiplexed Immunohistochemistry Panel for Studying Immune Responses During Ebola Infection. Frontiers in Immunology. 12: 729845. PMID 34938283 DOI: 10.3389/fimmu.2021.729845  0.12
2021 Hickey JW, Tan Y, Nolan GP, Goltsev Y. Strategies for Accurate Cell Type Identification in CODEX Multiplexed Imaging Data. Frontiers in Immunology. 12: 727626. PMID 34484237 DOI: 10.3389/fimmu.2021.727626  0.119
2021 Rhodes KR, Isser A, Hickey JW, Ben-Akiva E, Meyer RA, Kosmides AK, Livingston NK, Tzeng SY, Schneck JP, Green JJ. Biodegradable Cationic Polymer Blends for Fabrication of Enhanced Artificial Antigen Presenting Cells to Treat Melanoma. Acs Applied Materials & Interfaces. PMID 33573372 DOI: 10.1021/acsami.0c19955  0.118
2012 Hickey JM, Gorjanc G. Simulated data for genomic selection and genome-wide association studies using a combination of coalescent and gene drop methods. G3 (Bethesda, Md.). 2: 425-7. PMID 22540033 DOI: 10.1534/g3.111.001297  0.118
2023 Strasser MK, Gibbs DL, Gascard P, Bons J, Hickey JW, Schürch CM, Tan Y, Black S, Chu P, Ozkan A, Basisty N, Sangwan V, Rose J, Shah S, Camilleri-Broet S, et al. Concerted epithelial and stromal changes during progression of Barrett's Esophagus to invasive adenocarcinoma exposed by multi-scale, multi-omics analysis. Biorxiv : the Preprint Server For Biology. PMID 37333362 DOI: 10.1101/2023.06.08.544265  0.115
2013 Majumdar R, Manikwar P, Hickey JM, Samra HS, Sathish HA, Bishop SM, Middaugh CR, Volkin DB, Weis DD. Effects of salts from the Hofmeister series on the conformational stability, aggregation propensity, and local flexibility of an IgG1 monoclonal antibody. Biochemistry. 52: 3376-89. PMID 23594236 DOI: 10.1021/Bi400232P  0.115
2017 Hickey JW, Vicente FP, Howard GP, Mao HQ, Schneck JP. Biologically Inspired Design of Nanoparticle Artificial Antigen-Presenting Cells for Immunomodulation. Nano Letters. PMID 28994285 DOI: 10.1021/Acs.Nanolett.7B03734  0.112
2018 Hickey JW, Isser AY, Vicente FP, Warner SB, Mao HQ, Schneck JP. Efficient magnetic enrichment of antigen-specific T cells by engineering particle properties. Biomaterials. 187: 105-116. PMID 30312851 DOI: 10.1016/J.Biomaterials.2018.09.029  0.111
2014 Hickey JM, Holtz KM, Manikwar P, Joshi SB, McPherson CE, Buckland B, Srivastava IK, Middaugh CR, Volkin DB. Mechanism of a decrease in potency for the recombinant influenza A virus hemagglutinin H3 antigen during storage. Journal of Pharmaceutical Sciences. 103: 821-7. PMID 24425059 DOI: 10.1002/Jps.23848  0.11
2020 Werner CR, Gaynor RC, Gorjanc G, Hickey JM, Kox T, Abbadi A, Leckband G, Snowdon RJ, Stahl A. How Population Structure Impacts Genomic Selection Accuracy in Cross-Validation: Implications for Practical Breeding. Frontiers in Plant Science. 11: 592977. PMID 33391305 DOI: 10.3389/fpls.2020.592977  0.109
2013 Crossa J, Beyene Y, Kassa S, Pérez P, Hickey JM, Chen C, de los Campos G, Burgueño J, Windhausen VS, Buckler E, Jannink JL, Lopez Cruz MA, Babu R. Genomic prediction in maize breeding populations with genotyping-by-sequencing. G3 (Bethesda, Md.). 3: 1903-26. PMID 24022750 DOI: 10.1534/G3.113.008227  0.106
2022 Tolhurst DJ, Gaynor RC, Gardunia B, Hickey JM, Gorjanc G. Genomic selection using random regressions on known and latent environmental covariates. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 36066596 DOI: 10.1007/s00122-022-04186-w  0.105
2020 Pandey MK, Chaudhari S, Jarquin D, Janila P, Crossa J, Patil SC, Sundravadana S, Khare D, Bhat RS, Radhakrishnan T, Hickey JM, Varshney RK. Genome-based trait prediction in multi- environment breeding trials in groundnut. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 32809035 DOI: 10.1007/s00122-020-03658-1  0.105
2018 Kosmides AK, Necochea K, Hickey JW, Schneck JP. Separating T Cell Targeting Components onto Magnetically Clustered Nanoparticles Boosts Activation. Nano Letters. PMID 29488768 DOI: 10.1021/Acs.Nanolett.7B05284  0.104
2021 Dalvie NC, Brady JR, Crowell LE, Tracey MK, Biedermann AM, Kaur K, Hickey JM, Kristensen DL, Bonnyman AD, Rodriguez-Aponte SA, Whittaker CA, Bok M, Vega C, Mukhopadhyay TK, Joshi SB, et al. Molecular engineering improves antigen quality and enables integrated manufacturing of a trivalent subunit vaccine candidate for rotavirus. Microbial Cell Factories. 20: 94. PMID 33933073 DOI: 10.1186/s12934-021-01583-6  0.103
2023 Kumru OS, Bajoria S, Kaur K, Hickey JM, Van Slyke G, Doering J, Berman K, Richardson C, Lien H, Kleanthous H, Mantis NJ, Joshi SB, Volkin DB. Effects of aluminum-salt, CpG and emulsion adjuvants on the stability and immunogenicity of a virus-like particle displaying the SARS-CoV-2 receptor-binding domain (RBD). Human Vaccines & Immunotherapeutics. 19: 2264594. PMID 37932241 DOI: 10.1080/21645515.2023.2264594  0.102
2005 Coffey MP, Hickey J, Brotherstone S. Growth trajectories of Holstein dairy cows Proceedings of the British Society of Animal Science. 2005: 13-13. DOI: 10.1017/s1752756200009248  0.101
2023 Kumar P, Wang M, Kumru OS, Hickey JM, Sanmiguel J, Zabaleta N, Vandenberghe LH, Joshi SB, Volkin DB. Correlating physicochemical and biological properties to define critical quality attributes of a rAAV vaccine candidate. Molecular Therapy. Methods & Clinical Development. 30: 103-121. PMID 37746246 DOI: 10.1016/j.omtm.2023.06.004  0.101
2018 Hickey JW, Kosmides AK, Schneck JP. Engineering Platforms for T Cell Modulation. International Review of Cell and Molecular Biology. 341: 277-362. PMID 30262034 DOI: 10.1016/Bs.Ircmb.2018.06.003  0.101
2022 Ros-Freixedes R, Valente BD, Chen CY, Herring WO, Gorjanc G, Hickey JM, Johnsson M. Rare and population-specific functional variation across pig lines. Genetics, Selection, Evolution : Gse. 54: 39. PMID 35659233 DOI: 10.1186/s12711-022-00732-8  0.1
2020 Velez-Suberbie ML, Morris SA, Kaur K, Hickey JM, Joshi SB, Volkin DB, Bracewell DG, Mukhopadhyay TK. Holistic process development to mitigate proteolysis of a subunit rotavirus vaccine candidate produced in Pichia pastoris by means of an acid pH pulse during fed-batch fermentation. Biotechnology Progress. e2966. PMID 31960616 DOI: 10.1002/Btpr.2966  0.099
2024 Livingston NK, Hickey JW, Sim H, Salathe SF, Choy J, Kong J, Silver AB, Stelzel JL, Omotoso MO, Li S, Chaisawangwong W, Roy S, Ariail EC, Lanis MR, Pradeep P, et al. In Vivo Stimulation of Therapeutic Antigen-Specific T Cells in an Artificial Lymph Node Matrix. Advanced Materials (Deerfield Beach, Fla.). e2310043. PMID 38358310 DOI: 10.1002/adma.202310043  0.099
2021 Black S, Phillips D, Hickey JW, Kennedy-Darling J, Venkataraaman VG, Samusik N, Goltsev Y, Schürch CM, Nolan GP. CODEX multiplexed tissue imaging with DNA-conjugated antibodies. Nature Protocols. PMID 34215862 DOI: 10.1038/s41596-021-00556-8  0.099
2018 Hickey JW, Schneck JP. Enrich and Expand Rare Antigen-specific T Cells with Magnetic Nanoparticles. Journal of Visualized Experiments : Jove. PMID 30507913 DOI: 10.3791/58640  0.098
2023 Igarashi KJ, Kucinski I, Chan YY, Tan TK, Khoo HM, Kealy D, Bhadury J, Hsu I, Ho PY, Niizuma K, Hickey JW, Nolan G, Bridge KS, Czechowicz A, Gottgens B, et al. Physioxia improves the selectivity of hematopoietic stem cell expansion cultures. Blood Advances. PMID 36809781 DOI: 10.1182/bloodadvances.2023009668  0.096
2020 Bessell CA, Isser A, Havel JJ, Lee S, Bell DR, Hickey JW, Chaisawangwong W, Glick Bieler J, Srivastava R, Kuo F, Purohit T, Zhou R, Chan TA, Schneck JP. Commensal bacteria stimulate antitumor responses via T cell cross-reactivity. Jci Insight. 5. PMID 32324171 DOI: 10.1172/Jci.Insight.135597  0.095
2011 Liu J, Geng Y, Pound E, Gyawali S, Ashton JR, Hickey J, Woolley AT, Harb JN. Metallization of branched DNA origami for nanoelectronic circuit fabrication. Acs Nano. 5: 2240-7. PMID 21323323 DOI: 10.1021/Nn1035075  0.095
2020 Hickey JW, Isser A, Salathe SF, Gee KM, Hsiao MH, Shaikh W, Uzoukwu NC, Bieler JG, Mao HQ, Schneck JP. Adaptive Nanoparticle Platforms for High Throughput Expansion and Detection of Antigen-Specific T cells. Nano Letters. PMID 32594746 DOI: 10.1021/Acs.Nanolett.0C01511  0.095
2023 Ben-Akiva E, Hickey JW, Meyer RA, Isser A, Shannon SR, Livingston NK, Rhodes KR, Kosmides AK, Warren TR, Tzeng SY, Schneck JP, Green JJ. Shape Matters: Biodegradable Anisotropic Nanoparticle Artificial Antigen Presenting Cells for Cancer Immunotherapy. Acta Biomaterialia. PMID 36812956 DOI: 10.1016/j.actbio.2023.02.023  0.094
2014 Crossa J, Pérez P, Hickey J, Burgueño J, Ornella L, Cerón-Rojas J, Zhang X, Dreisigacker S, Babu R, Li Y, Bonnett D, Mathews K. Genomic prediction in CIMMYT maize and wheat breeding programs Heredity. 112: 48-60. PMID 23572121 DOI: 10.1038/hdy.2013.16  0.093
2023 Matusiak M, Hickey J, Luca B, Lu G, Kidzinski L, Zhu S, Colburg D, Phillips D, Brubaker S, Charville G, Shen J, Nolan G, Newman A, West R, van de Rijn M. A spatial map of human macrophage niches reveals context-dependent macrophage functions in colon and breast cancer. Research Square. PMID 36711732 DOI: 10.21203/rs.3.rs-2393443/v1  0.093
2016 Hickey JM, Sahni N, Toth RT, Kumru OS, Joshi SB, Middaugh CR, Volkin DB. Challenges and opportunities of using liquid chromatography and mass spectrometry methods to develop complex vaccine antigens as pharmaceutical dosage forms. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. PMID 27071526 DOI: 10.1016/J.Jchromb.2016.04.001  0.09
2024 Bialy N, Alber F, Andrews B, Angelo M, Beliveau B, Bintu L, Boettiger A, Boehm U, Brown CM, Maina MB, Chambers JJ, Cimini BA, Eliceiri K, Errington R, Faklaris O, ... ... Hickey JW, et al. Harmonizing the Generation and Pre-publication Stewardship of FAIR Image Data. Arxiv. PMID 38351940  0.09
2017 Antolín R, Nettelblad C, Gorjanc G, Money D, Hickey JM. A hybrid method for the imputation of genomic data in livestock populations. Genetics, Selection, Evolution : Gse. 49: 30. PMID 28253858 DOI: 10.1186/S12711-017-0300-Y  0.089
2020 Ros-Freixedes R, Whalen A, Gorjanc G, Mileham AJ, Hickey JM. Evaluation of sequencing strategies for whole-genome imputation with hybrid peeling. Genetics, Selection, Evolution : Gse. 52: 18. PMID 32248818 DOI: 10.1186/s12711-020-00537-7  0.089
2013 Hickey JM, Kinghorn BP, Tier B, Clark SA, van der Werf JH, Gorjanc G. Genomic evaluations using similarity between haplotypes. Journal of Animal Breeding and Genetics = Zeitschrift Fã¼R Tierzã¼Chtung Und Zã¼Chtungsbiologie. 130: 259-69. PMID 23855628 DOI: 10.1111/jbg.12020  0.087
2019 Selle ML, Steinsland I, Hickey JM, Gorjanc G. Flexible modelling of spatial variation in agricultural field trials with the R package INLA. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 31535162 DOI: 10.1007/s00122-019-03424-y  0.087
2019 Friedrich J, Strandberg E, Arvelius P, Sánchez-Molano E, Pong-Wong R, Hickey JM, Haskell MJ, Wiener P. Genetic dissection of complex behaviour traits in German Shepherd dogs. Heredity. PMID 31611599 DOI: 10.1038/s41437-019-0275-2  0.087
2023 Jackson R, Buntjer JB, Bentley AR, Lage J, Byrne E, Burt C, Jack P, Berry S, Flatman E, Poupard B, Smith S, Hayes C, Barber T, Love B, Gaynor RC, ... ... Hickey JM, et al. Phenomic and genomic prediction of yield on multiple locations in winter wheat. Frontiers in Genetics. 14: 1164935. PMID 37229190 DOI: 10.3389/fgene.2023.1164935  0.086
2018 Whalen A, Gorjanc G, Ros-Freixedes R, Hickey JM. Assessment of the performance of hidden Markov models for imputation in animal breeding. Genetics, Selection, Evolution : Gse. 50: 44. PMID 30223768 DOI: 10.1186/s12711-018-0416-8  0.085
2012 Windhausen VS, Atlin GN, Hickey JM, Crossa J, Jannink JL, Sorrells ME, Raman B, Cairns JE, Tarekegne A, Semagn K, Beyene Y, Grudloyma P, Technow F, Riedelsheimer C, Melchinger AE. Effectiveness of genomic prediction of maize hybrid performance in different breeding populations and environments. G3 (Bethesda, Md.). 2: 1427-36. PMID 23173094 DOI: 10.1534/G3.112.003699  0.084
2018 Whalen A, Ros-Freixedes R, Wilson DL, Gorjanc G, Hickey JM. Hybrid peeling for fast and accurate calling, phasing, and imputation with sequence data of any coverage in pedigrees. Genetics, Selection, Evolution : Gse. 50: 67. PMID 30563452 DOI: 10.1186/s12711-018-0438-2  0.083
2023 Jain Y, Godwin LL, Ju Y, Sood N, Quardokus EM, Bueckle A, Longacre T, Horning A, Lin Y, Esplin ED, Hickey JW, Snyder MP, Patterson NH, Spraggins JM, Börner K. Segmentation of human functional tissue units in support of a Human Reference Atlas. Communications Biology. 6: 717. PMID 37468557 DOI: 10.1038/s42003-023-04848-5  0.082
2023 Jang S, Ros-Freixedes R, Hickey JM, Chen CY, Herring WO, Holl J, Misztal I, Lourenco D. Multi-line ssGBLUP evaluation using preselected markers from whole-genome sequence data in pigs. Frontiers in Genetics. 14: 1163626. PMID 37252662 DOI: 10.3389/fgene.2023.1163626  0.081
2018 Ros-Freixedes R, Battagin M, Johnsson M, Gorjanc G, Mileham AJ, Rounsley SD, Hickey JM. Impact of index hopping and bias towards the reference allele on accuracy of genotype calls from low-coverage sequencing. Genetics, Selection, Evolution : Gse. 50: 64. PMID 30545283 DOI: 10.1186/S12711-018-0436-4  0.08
2022 Lu G, Baertsch MA, Hickey JW, Goltsev Y, Rech AJ, Mani L, Forgó E, Kong C, Jiang S, Nolan GP, Rosenthal EL. A real-time GPU-accelerated parallelized image processor for large-scale multiplexed fluorescence microscopy data. Frontiers in Immunology. 13: 981825. PMID 36211386 DOI: 10.3389/fimmu.2022.981825  0.079
2023 Jang S, Ros-Freixedes R, Hickey JM, Chen CY, Holl J, Herring WO, Misztal I, Lourenco D. Using pre-selected variants from large-scale whole-genome sequence data for single-step genomic predictions in pigs. Genetics, Selection, Evolution : Gse. 55: 55. PMID 37495982 DOI: 10.1186/s12711-023-00831-0  0.079
2013 Carré C, Gamboa F, Cros D, Hickey JM, Gorjanc G, Manfredi E. Genetic prediction of complex traits: integrating infinitesimal and marked genetic effects. Genetica. 141: 239-46. PMID 23715777 DOI: 10.1007/S10709-013-9722-9  0.078
2019 Pruitt HC, Lewis D, Ciccaglione M, Connor S, Smith Q, Hickey JW, Schneck JP, Gerecht S. Collagen fiber structure guides 3D motility of cytotoxic T lymphocytes. Matrix Biology : Journal of the International Society For Matrix Biology. PMID 30776427 DOI: 10.1016/J.Matbio.2019.02.003  0.077
2017 Ros-Freixedes R, Gonen S, Gorjanc G, Hickey JM. A method for allocating low-coverage sequencing resources by targeting haplotypes rather than individuals. Genetics, Selection, Evolution : Gse. 49: 78. PMID 29070022 DOI: 10.1186/s12711-017-0353-y  0.077
2021 Munger E, Hickey JW, Dey AK, Jafri MS, Kinser JM, Mehta NN. Application of machine learning in understanding atherosclerosis: Emerging insights. Apl Bioengineering. 5: 011505. PMID 33644628 DOI: 10.1063/5.0028986  0.076
2023 Jain S, Pei L, Spraggins JM, Angelo M, Carson JP, Gehlenborg N, Ginty F, Gonçalves JP, Hagood JS, Hickey JW, Kelleher NL, Laurent LC, Lin S, Lin Y, Liu H, et al. Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP). Nature Cell Biology. PMID 37468756 DOI: 10.1038/s41556-023-01194-w  0.076
2018 Whalen A, Gorjanc G, Hickey JM. Parentage assignment with genotyping-by-sequencing data. Journal of Animal Breeding and Genetics = Zeitschrift Fur Tierzuchtung Und Zuchtungsbiologie. PMID 30548685 DOI: 10.1111/jbg.12370  0.076
2019 Dawson IK, Powell W, Hendre P, Bančič J, Hickey JM, Kindt R, Hoad S, Hale I, Jamnadass R. The role of genetics in mainstreaming the production of new and orphan crops to diversify food systems and support human nutrition. The New Phytologist. PMID 31063598 DOI: 10.1111/nph.15895  0.075
2013 de Los Campos G, Hickey JM, Pong-Wong R, Daetwyler HD, Calus MP. Whole-genome regression and prediction methods applied to plant and animal breeding. Genetics. 193: 327-45. PMID 22745228 DOI: 10.1534/genetics.112.143313  0.074
2014 Calus MP, Bouwman AC, Hickey JM, Veerkamp RF, Mulder HA. Evaluation of measures of correctness of genotype imputation in the context of genomic prediction: a review of livestock applications. Animal : An International Journal of Animal Bioscience. 8: 1743-53. PMID 25045914 DOI: 10.1017/S1751731114001803  0.074
2018 Friedrich J, Antolín R, Edwards SM, Sánchez-Molano E, Haskell MJ, Hickey JM, Wiener P. Accuracy of genotype imputation in Labrador Retrievers. Animal Genetics. PMID 29974966 DOI: 10.1111/age.12677  0.074
2022 Ros-Freixedes R, Johnsson M, Whalen A, Chen CY, Valente BD, Herring WO, Gorjanc G, Hickey JM. Genomic prediction with whole-genome sequence data in intensely selected pig lines. Genetics, Selection, Evolution : Gse. 54: 65. PMID 36153511 DOI: 10.1186/s12711-022-00756-0  0.074
2016 Roorkiwal M, Rathore A, Das RR, Singh MK, Jain A, Srinivasan S, Gaur PM, Chellapilla B, Tripathi S, Li Y, Hickey JM, Lorenz A, Sutton T, Crossa J, Jannink JL, et al. Genome-Enabled Prediction Models for Yield Related Traits in Chickpea. Frontiers in Plant Science. 7: 1666. PMID 27920780 DOI: 10.3389/fpls.2016.01666  0.074
2016 Faux AM, Gorjanc G, Gaynor RC, Battagin M, Edwards SM, Wilson DL, Hearne SJ, Gonen S, Hickey JM. AlphaSim: Software for Breeding Program Simulation. The Plant Genome. 9. PMID 27902803 DOI: 10.3835/plantgenome2016.02.0013  0.071
2017 Gonen S, Ros-Freixedes R, Battagin M, Gorjanc G, Hickey JM. A method for the allocation of sequencing resources in genotyped livestock populations. Genetics, Selection, Evolution : Gse. 49: 47. PMID 28521728 DOI: 10.1186/s12711-017-0322-5  0.071
2021 FitzGerald R, Devapal M, Hickey JJ, McNamara D, Kelleher D, Smith SM. Purification of Total RNA from Stomach Tissue Biopsies. Methods in Molecular Biology (Clifton, N.J.). 2283: 51-59. PMID 33765309 DOI: 10.1007/978-1-0716-1302-3_7  0.071
1948 Hickey JM. Organizing Effective Public Relations The Bulletin of the National Association of Secondary School Principals. 32: 59-72. DOI: 10.1177/019263654803215210  0.069
2012 Cleveland MA, Hickey JM, Forni S. A common dataset for genomic analysis of livestock populations. G3 (Bethesda, Md.). 2: 429-35. PMID 22540034 DOI: 10.1534/g3.111.001453  0.069
2016 Faux AM, Gorjanc G, Gaynor RC, Battagin M, Edwards SM, Wilson DL, Hearne SJ, Gonen S, Hickey JM. Alphasim: Software for breeding program simulation Plant Genome. 9. DOI: 10.3835/plantgenome2016.02.0013  0.069
2011 Hickey JM, Kinghorn BP, Tier B, Wilson JF, Dunstan N, van der Werf JH. A combined long-range phasing and long haplotype imputation method to impute phase for SNP genotypes. Genetics, Selection, Evolution : Gse. 43: 12. PMID 21388557 DOI: 10.1186/1297-9686-43-12  0.069
2018 Wan Y, Hickey JM, Bird C, Witham K, Fahey P, Forster A, Joshi SB, Volkin DB. Development of Stabilizing Formulations of a Trivalent Inactivated Poliovirus Vaccine in a Dried State for Delivery in the NanopatchTM Microprojection Array. Journal of Pharmaceutical Sciences. PMID 29421219 DOI: 10.1016/J.Xphs.2018.01.027  0.068
2020 Selle ML, Steinsland I, Powell O, Hickey JM, Gorjanc G. Spatial modelling improves genetic evaluation in smallholder breeding programs. Genetics, Selection, Evolution : Gse. 52: 69. PMID 33198636 DOI: 10.1186/s12711-020-00588-w  0.068
2019 Jenko J, McClure MC, Matthews D, McClure J, Johnsson M, Gorjanc G, Hickey JM. Analysis of a large dataset reveals haplotypes carrying putatively recessive lethal and semi-lethal alleles with pleiotropic effects on economically important traits in beef cattle. Genetics, Selection, Evolution : Gse. 51: 9. PMID 30836944 DOI: 10.1186/S12711-019-0452-Z  0.068
2014 Hickey JM, Gorjanc G, Hearne S, Huang BE. AlphaMPSim: flexible simulation of multi-parent crosses. Bioinformatics (Oxford, England). 30: 2686-8. PMID 24872425 DOI: 10.1093/bioinformatics/btu206  0.068
2022 McAdams D, Estrada M, Holland D, Singh J, Sawant N, Hickey JM, Kumar P, Plikaytis B, Joshi SB, Volkin DB, Sitrin R, Cryz S, White JA. Concordance of in vitro and in vivo measures of non-replicating rotavirus vaccine potency. Vaccine. PMID 35871866 DOI: 10.1016/j.vaccine.2022.07.017  0.066
2020 Whalen A, Gorjanc G, Hickey JM. AlphaFamImpute: high accuracy imputation in full-sib families from genotype-by-sequencing data. Bioinformatics (Oxford, England). PMID 32467963 DOI: 10.1093/bioinformatics/btaa499  0.066
2019 Edwards SM, Buntjer JB, Jackson R, Bentley AR, Lage J, Byrne E, Burt C, Jack P, Berry S, Flatman E, Poupard B, Smith S, Hayes C, Gaynor RC, Gorjanc G, ... ... Hickey JM, et al. The effects of training population design on genomic prediction accuracy in wheat. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 30888431 DOI: 10.1007/S00122-019-03327-Y  0.066
2016 Wahome N, Hickey JM, Volkin DB, Middaugh CR. Formulation Studies During Preclinical Development of Influenza Hemagglutinin and Virus-Like Particle Vaccine Candidates. Methods in Molecular Biology (Clifton, N.J.). 1404: 393-421. PMID 27076313 DOI: 10.1007/978-1-4939-3389-1_27  0.066
2021 Jin YH, Robledo D, Hickey J, McGrew M, Houston R. Surrogate broodstock to enhance biotechnology research and applications in aquaculture. Biotechnology Advances. 107756. PMID 33895331 DOI: 10.1016/j.biotechadv.2021.107756  0.066
2020 Ros-Freixedes R, Whalen A, Chen CY, Gorjanc G, Herring WO, Mileham AJ, Hickey JM. Accuracy of whole-genome sequence imputation using hybrid peeling in large pedigreed livestock populations. Genetics, Selection, Evolution : Gse. 52: 17. PMID 32248811 DOI: 10.1186/s12711-020-00536-8  0.065
2013 Clark SA, Kinghorn BP, Hickey JM, van der Werf JH. The effect of genomic information on optimal contribution selection in livestock breeding programs. Genetics, Selection, Evolution : Gse. 45: 44. PMID 24171942 DOI: 10.1186/1297-9686-45-44  0.064
2023 Quardokus EM, Saunders DC, McDonough E, Hickey JW, Werlein C, Surrette C, Rajbhandari P, Casals AM, Tian H, Lowery L, Neumann EK, Björklund F, Neelakantan TV, Croteau J, Wiblin AE, et al. Organ Mapping Antibody Panels: a community resource for standardized multiplexed tissue imaging. Nature Methods. PMID 37468619 DOI: 10.1038/s41592-023-01846-7  0.064
2017 Hickey JM, Chiurugwi T, Mackay I, Powell W. Genomic prediction unifies animal and plant breeding programs to form platforms for biological discovery. Nature Genetics. 49: 1297-1303. PMID 28854179 DOI: 10.1038/ng.3920  0.063
2019 Gottardo P, Gorjanc G, Battagin M, Gaynor RC, Jenko J, Ros-Freixedes R, Bruce A Whitelaw C, Mileham AJ, Herring WO, Hickey JM. A Strategy To Exploit Surrogate Sire Technology in Livestock Breeding Programs. G3 (Bethesda, Md.). 9: 203-215. PMID 30563834 DOI: 10.1534/g3.118.200890  0.062
2020 Cowling WA, Gaynor RC, Antolín R, Gorjanc G, Edwards SM, Powell O, Hickey JM. In silico simulation of future hybrid performance to evaluate heterotic pool formation in a self-pollinating crop. Scientific Reports. 10: 4037. PMID 32132627 DOI: 10.1038/s41598-020-61031-0  0.059
2023 Desire S, Johnsson M, Ros-Freixedes R, Chen CY, Holl JW, Herring WO, Gorjanc G, Mellanby RJ, Hickey JM, Jungnickel MK. A genome-wide association study for loin depth and muscle pH in pigs from intensely selected purebred lines. Genetics, Selection, Evolution : Gse. 55: 42. PMID 37322449 DOI: 10.1186/s12711-023-00815-0  0.058
2019 Whitaker N, Hickey JM, Kaur K, Xiong J, Sawant N, Cupo A, Lee WH, Ozorowski G, Medina-Ramírez M, Ward AB, Sanders RW, Moore JP, Joshi SB, Volkin DB, Dey AK. Developability assessment of physicochemical properties and stability profiles of HIV-1 BG505 SOSIP.664 and BG505 SOSIP.v4.1-GT1.1 gp140 envelope glycoprotein trimers as candidate vaccine antigens. Journal of Pharmaceutical Sciences. PMID 30776383 DOI: 10.1016/J.Xphs.2019.01.033  0.058
2017 Tsai HY, Matika O, Edwards SM, Antolín-Sánchez R, Hamilton A, Guy DR, Tinch AE, Gharbi K, Stear MJ, Taggart JB, Bron JE, Hickey JM, Houston RD. Genotype Imputation to Improve the Cost-Efficiency of Genomic Selection in Farmed Atlantic Salmon. G3 (Bethesda, Md.). PMID 28250015 DOI: 10.1534/g3.117.040717  0.058
2021 Powell O, Mrode R, Gaynor RC, Johnsson M, Gorjanc G, Hickey JM. Genomic evaluations using data recorded on smallholder dairy farms in low- to middle-income countries. Jds Communications. 2: 366-370. PMID 36337118 DOI: 10.3168/jdsc.2021-0092  0.058
2013 Daetwyler HD, Calus MP, Pong-Wong R, de Los Campos G, Hickey JM. Genomic prediction in animals and plants: simulation of data, validation, reporting, and benchmarking. Genetics. 193: 347-65. PMID 23222650 DOI: 10.1534/genetics.112.147983  0.058
2017 Gorjanc G, Dumasy J, Gonen S, Gaynor RC, Antolin R, Hickey JM. Potential of Low-Coverage Genotyping-by-Sequencing and Imputation for Cost-Effective Genomic Selection in Biparental Segregating Populations Crop Science. 57: 1404-1420. DOI: 10.2135/CROPSCI2016.08.0675  0.057
2009 Ford RM, Williams KJ, Bishop ID, Hickey JE. Effects of information on the social acceptability of alternatives to clearfelling in Australian wet eucalypt forests. Environmental Management. 44: 1149-62. PMID 19902295 DOI: 10.1007/s00267-009-9392-7  0.057
2015 Gorjanc G, Cleveland MA, Houston RD, Hickey JM. Potential of genotyping-by-sequencing for genomic selection in livestock populations. Genetics, Selection, Evolution : Gse. 47: 12. PMID 25887531 DOI: 10.1186/s12711-015-0102-z  0.057
2021 Gozalo-Marcilla M, Buntjer J, Johnsson M, Batista L, Diez F, Werner CR, Chen CY, Gorjanc G, Mellanby RJ, Hickey JM, Ros-Freixedes R. Genetic architecture and major genes for backfat thickness in pig lines of diverse genetic backgrounds. Genetics, Selection, Evolution : Gse. 53: 76. PMID 34551713 DOI: 10.1186/s12711-021-00671-w  0.055
2015 Hickey JW, Santos JL, Williford JM, Mao HQ. Control of polymeric nanoparticle size to improve therapeutic delivery. Journal of Controlled Release : Official Journal of the Controlled Release Society. PMID 26450667 DOI: 10.1016/J.Jconrel.2015.10.006  0.055
2007 Hickey JM, Keane MG, Kenny DA, Cromie AR, Amer PR, Veerkamp RF. Heterogeneity of genetic parameters for calving difficulty in Holstein heifers in Ireland. Journal of Dairy Science. 90: 3900-8. PMID 17639001 DOI: 10.3168/JDS.2006-717  0.054
2011 Cleveland MA, Hickey JM, Kinghorn BP. Genotype imputation for the prediction of genomic breeding values in non-genotyped and low-density genotyped individuals. Bmc Proceedings. 5: S6. PMID 21624176 DOI: 10.1186/1753-6561-5-S3-S6  0.054
2014 Tam NK, Pitt WG, Perez KX, Hickey JW, Glenn AA, Chinn J, Liu XM, Maziarz EP. Prevention and removal of lipid deposits by lens care solutions and rubbing. Optometry and Vision Science : Official Publication of the American Academy of Optometry. 91: 1430-9. PMID 25325760 DOI: 10.1097/OPX.0000000000000419  0.053
2018 Edwards SM, Woolliams JA, Hickey JM, Blott SC, Clements DN, Sánchez-Molano E, Todhunter RJ, Wiener P. Joint Genomic Prediction of Canine Hip Dysplasia in UK and US Labrador Retrievers. Frontiers in Genetics. 9: 101. PMID 29643866 DOI: 10.3389/fgene.2018.00101  0.052
2019 Whalen A, Gorjanc G, Hickey JM. Family-specific genotype arrays increase the accuracy of pedigree-based imputation at very low marker densities. Genetics, Selection, Evolution : Gse. 51: 33. PMID 31242856 DOI: 10.1186/s12711-019-0478-2  0.051
2011 Clark SA, Hickey JM, van der Werf JH. Different models of genetic variation and their effect on genomic evaluation. Genetics, Selection, Evolution : Gse. 43: 18. PMID 21575265 DOI: 10.1186/1297-9686-43-18  0.051
2022 Jerajani K, Wan Y, Hickey JM, Kumru OS, Sharma N, Pullagurla SR, Ogun O, Mapari S, Whitaker N, Brendle S, Christensen ND, Batwal S, Mahedvi M, Rao H, Dogar V, et al. Analytical and Preformulation Characterization Studies of Human Papillomavirus Virus-Like Particles to Enable Quadrivalent Multi-Dose Vaccine Formulation Development. Journal of Pharmaceutical Sciences. PMID 35914546 DOI: 10.1016/j.xphs.2022.07.019  0.051
2021 Bančič J, Werner CR, Gaynor RC, Gorjanc G, Odeny DA, Ojulong HF, Dawson IK, Hoad SP, Hickey JM. Modeling Illustrates That Genomic Selection Provides New Opportunities for Intercrop Breeding. Frontiers in Plant Science. 12: 605172. PMID 33633761 DOI: 10.3389/fpls.2021.605172  0.051
2008 Hickey JM, Keane MG, Kenny DA, Cromie AR, Mulder HA, Veerkamp RF. Estimation of accuracy and bias in genetic evaluations with genetic groups using sampling. Journal of Animal Science. 86: 1047-56. PMID 18272854 DOI: 10.2527/jas.2007-0653  0.05
2018 Gorjanc G, Hickey JM. AlphaMate: a program for optimising selection, maintenance of diversity, and mate allocation in breeding programs. Bioinformatics (Oxford, England). PMID 29722792 DOI: 10.1093/bioinformatics/bty375  0.05
2015 Hickey JM. Sequencing millions of animals for genomic selection 2.0. Journal of Animal Breeding and Genetics = Zeitschrift Fur Tierzuchtung Und Zuchtungsbiologie. 130: 331-2. PMID 24074169 DOI: 10.1111/jbg.12054  0.05
2021 Johnsson M, Whalen A, Ros-Freixedes R, Gorjanc G, Chen CY, Herring WO, de Koning DJ, Hickey JM. Genetic variation in recombination rate in the pig. Genetics, Selection, Evolution : Gse. 53: 54. PMID 34171988 DOI: 10.1186/s12711-021-00643-0  0.049
2012 Clark SA, Hickey JM, Daetwyler HD, van der Werf JH. The importance of information on relatives for the prediction of genomic breeding values and the implications for the makeup of reference data sets in livestock breeding schemes. Genetics, Selection, Evolution : Gse. 44: 4. PMID 22321529 DOI: 10.1186/1297-9686-44-4  0.048
2015 Gorjanc G, Bijma P, Hickey JM. Reliability of pedigree-based and genomic evaluations in selected populations. Genetics, Selection, Evolution : Gse. 47: 65. PMID 26271246 DOI: 10.1186/s12711-015-0145-1  0.048
2018 Gonen S, Wimmer V, Gaynor RC, Byrne E, Gorjanc G, Hickey JM. A heuristic method for fast and accurate phasing and imputation of single-nucleotide polymorphism data in bi-parental plant populations. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 30078163 DOI: 10.1007/s00122-018-3156-9  0.048
2013 Hickey JM, Kranis A. Extending long-range phasing and haplotype library imputation methods to impute genotypes on sex chromosomes. Genetics, Selection, Evolution : Gse. 45: 10. PMID 23617460 DOI: 10.1186/1297-9686-45-10  0.048
2013 Cleveland MA, Hickey JM. Practical implementation of cost-effective genomic selection in commercial pig breeding using imputation. Journal of Animal Science. 91: 3583-92. PMID 23736050 DOI: 10.2527/jas.2013-6270  0.047
2023 Tolhurst DJ, Gaynor RC, Gardunia B, Hickey JM, Gorjanc G. Correction to: Genomic selection using random regressions on known and latent environmental covariates. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 136: 178. PMID 37542182 DOI: 10.1007/s00122-023-04417-8  0.046
2019 Fradgley N, Gardner KA, Cockram J, Elderfield J, Hickey JM, Howell P, Jackson R, Mackay IJ. A large-scale pedigree resource of wheat reveals evidence for adaptation and selection by breeders. Plos Biology. 17: e3000071. PMID 30818353 DOI: 10.1371/journal.pbio.3000071  0.046
2016 Gorjanc G, Jenko J, Hearne SJ, Hickey JM. Initiating maize pre-breeding programs using genomic selection to harness polygenic variation from landrace populations. Bmc Genomics. 17: 30. PMID 26732811 DOI: 10.1186/s12864-015-2345-z  0.046
2021 Batista LG, Gaynor RC, Margarido GRA, Byrne T, Amer P, Gorjanc G, Hickey JM. Long-term comparison between index selection and optimal independent culling in plant breeding programs with genomic prediction. Plos One. 16: e0235554. PMID 33970915 DOI: 10.1371/journal.pone.0235554  0.044
2019 Lee SM, Wu Y, Hickey JM, Miura K, Whitaker N, Joshi SB, Volkin DB, Richter King C, Plieskatt J. The Pfs230 N-terminal fragment, Pfs230D1+: expression and characterization of a potential malaria transmission-blocking vaccine candidate. Malaria Journal. 18: 356. PMID 31703583 DOI: 10.1186/S12936-019-2989-2  0.043
2018 Gorjanc G, Gaynor RC, Hickey JM. Optimal cross selection for long-term genetic gain in two-part programs with rapid recurrent genomic selection. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 29876589 DOI: 10.1007/s00122-018-3125-3  0.043
2020 Money D, Wilson D, Jenko J, Whalen A, Thorn S, Gorjanc G, Hickey JM. Extending long-range phasing and haplotype library imputation algorithms to large and heterogeneous datasets. Genetics, Selection, Evolution : Gse. 52: 38. PMID 32640985 DOI: 10.1186/S12711-020-00558-2  0.042
2003 Scott J, Hickey J. Immunizing adults against tetanus and diphtheria. Canadian Family Physician Medecin De Famille Canadien. 49: 587-8. PMID 12790269  0.042
2015 Mackay I, Ober E, Hickey J. GplusE: beyond genomic selection. Food and Energy Security. 4: 25-35. PMID 27610230 DOI: 10.1002/fes3.52  0.042
2015 Jenko J, Gorjanc G, Cleveland MA, Varshney RK, Whitelaw CB, Woolliams JA, Hickey JM. Potential of promotion of alleles by genome editing to improve quantitative traits in livestock breeding programs. Genetics, Selection, Evolution : Gse. 47: 55. PMID 26133579 DOI: 10.1186/s12711-015-0135-3  0.042
2014 Bouwman AC, Hickey JM, Calus MP, Veerkamp RF. Imputation of non-genotyped individuals based on genotyped relatives: assessing the imputation accuracy of a real case scenario in dairy cattle. Genetics, Selection, Evolution : Gse. 46: 6. PMID 24490796 DOI: 10.1186/1297-9686-46-6  0.042
2017 Gonen S, Battagin M, Johnston SE, Gorjanc G, Hickey JM. The potential of shifting recombination hotspots to increase genetic gain in livestock breeding. Genetics, Selection, Evolution : Gse. 49: 55. PMID 28676070 DOI: 10.1186/S12711-017-0330-5  0.042
2007 Hickey JM, Keane MG, Kenny DA, Cromie AR, Veerkamp RF. Genetic parameters for EUROP carcass traits within different groups of cattle in Ireland. Journal of Animal Science. 85: 314-21. PMID 17235018 DOI: 10.2527/JAS.2006-263  0.041
2015 Hickey JM, Gorjanc G, Varshney RK, Nettelblad C. Imputation of Single Nucleotide Polymorphism Genotypes in Biparental, Backcross, and Topcross Populations with a Hidden Markov Model Crop Science. 55: 1934-1946. DOI: 10.2135/CROPSCI2014.09.0648  0.041
2014 Tam NK, Pitt WG, Perez KX, Handly E, Glenn AA, Hickey JW, Larsen BG. The role of multi-purpose solutions in prevention and removal of lipid depositions on contact lenses. Contact Lens & Anterior Eye : the Journal of the British Contact Lens Association. 37: 405-14. PMID 25081521 DOI: 10.1016/j.clae.2014.07.003  0.041
2019 Obšteter J, Jenko J, Hickey JM, Gorjanc G. Efficient use of genomic information for sustainable genetic improvement in small cattle populations. Journal of Dairy Science. 102: 9971-9982. PMID 31477287 DOI: 10.3168/jds.2019-16853  0.04
2013 Hickey JM. Genotype phasing in populations of closely related individuals. Methods in Molecular Biology (Clifton, N.J.). 1019: 381-94. PMID 23756900 DOI: 10.1007/978-1-62703-447-0_16  0.039
2006 Coffey MP, Hickey J, Brotherstone S. Genetic aspects of growth of Holstein-Friesian dairy cows from birth to maturity. Journal of Dairy Science. 89: 322-9. PMID 16357296 DOI: 10.3168/jds.S0022-0302(06)72097-5  0.039
2016 Battagin M, Gorjanc G, Faux AM, Johnston SE, Hickey JM. Effect of manipulating recombination rates on response to selection in livestock breeding programs. Genetics, Selection, Evolution : Gse. 48: 44. PMID 27335010 DOI: 10.1186/S12711-016-0221-1  0.038
2017 Gonen S, Jenko J, Gorjanc G, Mileham AJ, Whitelaw CB, Hickey JM. Potential of gene drives with genome editing to increase genetic gain in livestock breeding programs. Genetics, Selection, Evolution : Gse. 49: 3. PMID 28093068 DOI: 10.1186/s12711-016-0280-3  0.037
2015 Varshney RK, Singh VK, Hickey JM, Xun X, Marshall DF, Wang J, Edwards D, Ribaut JM. Analytical and Decision Support Tools for Genomics-Assisted Breeding. Trends in Plant Science. PMID 26651919 DOI: 10.1016/j.tplants.2015.10.018  0.036
2016 Hickey JM, Bruce C, Whitelaw A, Gorjanc G. Promotion of alleles by genome editing in livestock breeding programmes. Journal of Animal Breeding and Genetics = Zeitschrift FüR TierzüChtung Und ZüChtungsbiologie. 133: 83-4. PMID 26995217 DOI: 10.1111/jbg.12206  0.035
2013 Hickey JM, Cleveland MA, Maltecca C, Gorjanc G, Gredler B, Kranis A. Genotype imputation to increase sample size in pedigreed populations. Methods in Molecular Biology (Clifton, N.J.). 1019: 395-410. PMID 23756901 DOI: 10.1007/978-1-62703-447-0_17  0.034
2015 Jenko J, Gorjanc G, Cleveland MA, Varshney RK, Whitelaw CB, Woolliams JA, Hickey JM. Erratum to: Potential of promotion of alleles by genome editing to improve quantitative traits in livestock breeding programs. Genetics, Selection, Evolution : Gse. 47: 69. PMID 26361936 DOI: 10.1186/s12711-015-0144-2  0.034
2012 Huang Y, Hickey JM, Cleveland MA, Maltecca C. Assessment of alternative genotyping strategies to maximize imputation accuracy at minimal cost. Genetics, Selection, Evolution : Gse. 44: 25. PMID 22849718 DOI: 10.1186/1297-9686-44-25  0.033
2012 Hickey JM, Kinghorn BP, Tier B, van der Werf JH, Cleveland MA. A phasing and imputation method for pedigreed populations that results in a single-stage genomic evaluation. Genetics, Selection, Evolution : Gse. 44: 9. PMID 22462519 DOI: 10.1186/1297-9686-44-9  0.032
2021 Vaughan B, Chase B, Hickey J, Tassoulas M, Weston H, Fitzgerald K, Flesichmann M, Mulcahy J, Austin P. PROMIS® Neuropathic and Nociceptive Pain Quality in Musculoskeletal Pain Presentations. The Clinical Journal of Pain. PMID 34183533 DOI: 10.1097/AJP.0000000000000955  0.031
2024 Jain S, Pei L, Spraggins JM, Angelo M, Carson JP, Gehlenborg N, Ginty F, Gonçalves JP, Hagood JS, Hickey JW, Kelleher NL, Laurent LC, Lin S, Lin Y, Liu H, et al. Author Correction: Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP). Nature Cell Biology. PMID 38429479 DOI: 10.1038/s41556-024-01384-0  0.03
2019 Hickey J, Gorjanc G, Hill B. The Fest Issue on Robin Thompson's contributions to statistics, genetics and animal/plant genetic improvement schemes. Journal of Animal Breeding and Genetics = Zeitschrift Fur Tierzuchtung Und Zuchtungsbiologie. 136: 229. PMID 31247678 DOI: 10.1111/jbg.12416  0.03
2016 Gorjanc G, Battagin M, Dumasy J, Antolin R, Gaynor RC, Hickey JM. Prospects for Cost-Effective Genomic Selection via Accurate Within-Family Imputation Crop Science. 57: 216-228. DOI: 10.2135/CROPSCI2016.06.0526  0.03
2010 Daetwyler HD, Hickey JM, Henshall JM, Dominik S, Gredler B, Van Der Werf JHJ, Hayes BJ. Accuracy of estimated genomic breeding values for wool and meat traits in a multi-breed sheep population Animal Production Science. 50: 1004-1010. DOI: 10.1071/AN10096  0.03
2021 Obšteter J, Holl J, Hickey JM, Gorjanc G. AlphaPart-R implementation of the method for partitioning genetic trends. Genetics, Selection, Evolution : Gse. 53: 30. PMID 33736590 DOI: 10.1186/s12711-021-00600-x  0.028
2003 Hickey J. Prostate-specific antigen testing. Should we recommend it? Canadian Family Physician Medecin De Famille Canadien. 49: 303-4. PMID 12675542  0.028
2016 Ladejobi O, Elderfield J, Gardner KA, Gaynor RC, Hickey J, Hibberd JM, Mackay IJ, Bentley AR. Maximizing the potential of multi-parental crop populations. Applied & Translational Genomics. 11: 9-17. PMID 28018845 DOI: 10.1016/j.atg.2016.10.002  0.028
2023 Werner CR, Gaynor RC, Sargent DJ, Lillo A, Gorjanc G, Hickey JM. Genomic selection strategies for clonally propagated crops. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 136: 74. PMID 36952013 DOI: 10.1007/s00122-023-04300-6  0.027
2012 Hickey JM, Crossa J, Babu R, de los Campos G. Factors Affecting the Accuracy of Genotype Imputation in Populations from Several Maize Breeding Programs Crop Science. 52: 654-663. DOI: 10.2135/CROPSCI2011.07.0358  0.026
2022 Jain R, Stone JA, Agarwal G, Andrade JG, Bacon SL, Bajaj HS, Baker B, Cheng G, Dannenbaum D, Gelfer M, Habert J, Hickey J, Keshavjee K, Kitty D, Lindsay P, et al. Canadian Cardiovascular Harmonized National Guideline Endeavour (C-CHANGE) guideline for the prevention and management of cardiovascular disease in primary care: 2022 update. Cmaj : Canadian Medical Association Journal = Journal De L'Association Medicale Canadienne. 194: E1460-E1480. PMID 36343954 DOI: 10.1503/cmaj.220138  0.024
2021 Gaynor RC, Gorjanc G, Hickey JM. AlphaSimR: an R package for breeding program simulations. G3 (Bethesda, Md.). 11. PMID 33704430 DOI: 10.1093/g3journal/jkaa017  0.024
2009 Hickey JM, Veerkamp RF, Calus MP, Mulder HA, Thompson R. Estimation of prediction error variances via Monte Carlo sampling methods using different formulations of the prediction error variance. Genetics, Selection, Evolution : Gse. 41: 23. PMID 19284698 DOI: 10.1186/1297-9686-41-23  0.023
2021 Dadousis C, Somavilla A, Ilska JJ, Johnsson M, Batista L, Mellanby RJ, Headon D, Gottardo P, Whalen A, Wilson D, Dunn IC, Gorjanc G, Kranis A, Hickey JM. A genome-wide association analysis for body weight at 35 days measured on 137,343 broiler chickens. Genetics, Selection, Evolution : Gse. 53: 70. PMID 34496773 DOI: 10.1186/s12711-021-00663-w  0.022
2023 Alvarez-Breckenridge C, Anderson KG, Correia AL, Demehri S, Dinh HQ, Dixon KO, Dunn GP, Evgin L, Goc J, Good Z, Hacohen N, Han P, Hanč P, Hickey J, Kersten K, et al. Lessons for the Next Generation of Scientists from the Second Annual Arthur and Sandra Irving Cancer Immunology Symposium. Cancer Immunology Research. OF1-OF7. PMID 37906619 DOI: 10.1158/2326-6066.CIR-23-0522  0.022
2006 Giri SK, Hickey JP, Sil D, Mabadeje O, Shaikh FM, Narasimhulu G, Flood HD. The long-term results of pubovaginal sling surgery using acellular cross-linked porcine dermis in the treatment of urodynamic stress incontinence. The Journal of Urology. 175: 1788-92; discussion . PMID 16600762 DOI: 10.1016/S0022-5347(05)01023-2  0.021
2014 Hickey JM, Dreisigacker S, Crossa J, Hearne S, Babu R, Prasanna BM, Grondona M, Zambelli A, Windhausen VS, Mathews K, Gorjanc G. Evaluation of genomic selection training population designs and genotyping strategies in plant breeding programs using simulation Crop Science. 54: 1476-1488. DOI: 10.2135/cropsci2013.03.0195  0.019
2019 Frawley A, Hickey J, Weaver C, Williams JP, Szakmany T. Introducing a new sedation policy in a large district general hospital: before and after cohort analysis. Anaesthesiology Intensive Therapy. PMID 30747991 DOI: 10.5603/AIT.a2019.0004  0.018
2021 Nesmith JE, Hickey JW, Haase E. Improving Biomedical Engineering Undergraduate Learning Through Use of Online Graduate Engineering Courses During the COVID-19 Pandemic. Biomedical Engineering Education. 1-8. PMID 33554220 DOI: 10.1007/s43683-020-00041-w  0.018
2017 Jackson R, Gaynor R, Bentley A, Hickey J, Mackay I, Ober E. How remote sensing is offering complementing and diverging opportunities for precision agriculture users and researchers Advances in Animal Biosciences. 8: 383-387. DOI: 10.1017/S2040470017000930  0.016
2021 Gonen S, Wimmer V, Gaynor RC, Byrne E, Gorjanc G, Hickey JM. Phasing and imputation of single nucleotide polymorphism data of missing parents of biparental plant populations. Crop Science. 61: 2243-2253. PMID 34413534 DOI: 10.1002/csc2.20409  0.016
2017 Gaynor RC, Gorjanc G, Bentley AR, Ober ES, Howell P, Jackson R, Mackay IJ, Hickey JM. A Two-Part Strategy for Using Genomic Selection to Develop Inbred Lines Crop Science. 57: 2372-2386. DOI: 10.2135/CROPSCI2016.09.0742  0.015
2004 Hickey J. Medical litigation: past, present and future. Hospital Medicine (London, England : 1998). 65: 184. PMID 15052915  0.014
2023 Jain R, Stone JA, Agarwal G, Andrade JG, Bacon SL, Bajaj HS, Baker B, Cheng G, Dannenbaum D, Gelfer M, Habert J, Hickey J, Keshavjee K, Kitty D, Lindsay P, et al. [Not Available]. Cmaj : Canadian Medical Association Journal = Journal De L'Association Medicale Canadienne. 195: E21-E42. PMID 36623864 DOI: 10.1503/cmaj.220138-f  0.01
2019 Hickey J, Hill WG, Blasco A, Cameron N, Cullis B, McGuirk B, Mäntysaari E, Ruane J, Simm G, Veerkamp R, Visscher PM, Wray NR. Students', colleagues' and research partners' experience about work and accomplishments from collaborating with Robin Thompson. Journal of Animal Breeding and Genetics = Zeitschrift Fur Tierzuchtung Und Zuchtungsbiologie. 136: 301-309. PMID 31247683 DOI: 10.1111/Jbg.12418  0.01
2016 Wolc A, Kranis A, Arango J, Settar P, Fulton J, O'Sullivan N, Avendano A, Watson K, Hickey J, de los Campos G, Fernando R, Garrick D, Dekkers J. Implementation of genomic selection in the poultry industry Animal Frontiers. 6: 23-31. DOI: 10.2527/Af.2016-0004  0.01
2015 Hickey JP, Flaherty G. An outbreak of viral conjunctivitis in an Irish military deployment to Liberia. Travel Medicine and Infectious Disease. 13: 197-9. PMID 25736947 DOI: 10.1016/j.tmaid.2015.01.004  0.01
2008 Thompson A, Campbell NR, Cloutier L, Costello JA, Dawes M, Hickey J, Kaczorowski J, Lewanczuk RZ, Semchuk W, Tsuyuki RT. Tackling the burden of hypertension in Canada: encouraging collaborative care. Canadian Family Physician MéDecin De Famille Canadien. 54: 1659-62, 1664-7. PMID 19074693  0.01
2004 Hickey J. Concussion. Canadian Family Physician Medecin De Famille Canadien. 50: 231-3. PMID 15000333  0.01
2003 Hickey J. Waist circumference and cardiovascular risk. Canadian Family Physician Medecin De Famille Canadien. 49: 1287. PMID 14594096  0.01
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